AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048280.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048280.01.T03 MTR_4g087270 76.289 291 31 7 8 276 376 650 4.33e-127 378
MsG0080048280.01.T03 MTR_4g087270 75.945 291 31 8 8 276 376 649 1.04e-124 372
MsG0080048280.01.T02 MTR_4g087270 74.005 377 33 3 1 375 1 314 1.58e-154 450
MsG0080048280.01.T02 MTR_4g087270 74.005 377 33 3 1 375 1 314 1.64e-154 450
MsG0080048280.01.T01 MTR_4g087270 76.289 291 31 7 8 276 376 650 4.33e-127 378
MsG0080048280.01.T01 MTR_4g087270 75.945 291 31 8 8 276 376 649 1.04e-124 372
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048280.01.T03 AT2G43650 40.580 276 128 9 20 276 395 653 2.79e-36 138
MsG0080048280.01.T03 AT3G28230 37.097 124 54 4 164 276 60 170 3.73e-13 67.0
MsG0080048280.01.T03 AT3G28230 37.097 124 54 4 164 276 61 171 4.07e-13 67.0
MsG0080048280.01.T02 AT2G43650 34.962 266 121 8 136 375 85 324 1.50e-25 108
MsG0080048280.01.T01 AT2G43650 40.580 276 128 9 20 276 395 653 2.79e-36 138
MsG0080048280.01.T01 AT3G28230 37.097 124 54 4 164 276 60 170 3.73e-13 67.0
MsG0080048280.01.T01 AT3G28230 37.097 124 54 4 164 276 61 171 4.07e-13 67.0

Find 53 sgRNAs with CRISPR-Local

Find 575 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTTGTGAAGGTTAAAA+AGG 0.178594 contig261end:-15338 MsG0080048280.01.T01:intron
GTTTGGTTTGTTTAGTAATT+AGG 0.196859 contig261end:-17762 MsG0080048280.01.T01:intron
GACAACCAATCAACTAATTC+TGG 0.211578 contig261end:+16040 None:intergenic
TTAATTTCCTTTGTTACTTT+TGG 0.223089 contig261end:-17837 MsG0080048280.01.T01:intron
AAATAAATTGTAACACAATA+TGG 0.282580 contig261end:+15362 None:intergenic
CTTATTTATGTTGTTCTACT+TGG 0.302124 contig261end:-15399 MsG0080048280.01.T01:intron
TCTTCAAGGCGAGCTATTAC+AGG 0.346861 contig261end:+15190 None:intergenic
GATCAAGGAATTAATGAATC+AGG 0.364978 contig261end:-15167 MsG0080048280.01.T01:intron
TTAATTCCTTGATCTCTTCA+AGG 0.381679 contig261end:+15176 None:intergenic
TTCTGATAAATATACATGTT+TGG 0.384239 contig261end:-17779 MsG0080048280.01.T01:intron
AGAATGTCCTCAAGTTCAAC+TGG 0.400387 contig261end:+13696 None:intergenic
GGACTTGAGTAGAAGGTAGA+AGG 0.410082 contig261end:+15237 None:intergenic
TAAAGTCGAATTTATTCAAA+AGG 0.416261 contig261end:-17807 MsG0080048280.01.T01:intron
GCCCTTCGGACTTGAGTAGA+AGG 0.419489 contig261end:+15230 None:intergenic
ATTCTGTTTACCGAGACATT+GGG 0.427858 contig261end:-15569 MsG0080048280.01.T01:intron
ATCACTACAACTGCTTCTTC+TGG 0.429549 contig261end:+13564 None:intergenic
TTATTTATGTTGTTCTACTT+GGG 0.438528 contig261end:-15398 MsG0080048280.01.T01:intron
CTGCCCCAGAATTAGTTGAT+TGG 0.442694 contig261end:-16045 MsG0080048280.01.T01:five_prime_UTR
GCGATAGAATCGGCTGGCAT+TGG 0.445657 contig261end:+13621 None:intergenic
GAAGGTTATAGCTTGGCAAT+AGG 0.464718 contig261end:+15255 None:intergenic
ACAACCAATCAACTAATTCT+GGG 0.466223 contig261end:+16041 None:intergenic
AGCTCGCCTTGAAGAGATCA+AGG 0.498098 contig261end:-15182 MsG0080048280.01.T01:five_prime_UTR
ATGATCGACTTGCTGCCCTT+CGG 0.498169 contig261end:+15216 None:intergenic
TATTCTGTTTACCGAGACAT+TGG 0.504727 contig261end:-15570 MsG0080048280.01.T01:intron
TCTCGTTTATGCGATAGAAT+CGG 0.506549 contig261end:+13611 None:intergenic
AGCAAATGAACGTTCTGTAT+AGG 0.509672 contig261end:-17159 MsG0080048280.01.T01:intron
ATTTATTTCATCTCTTGTGA+AGG 0.542831 contig261end:-15347 MsG0080048280.01.T01:intron
ATAACACTATAATTCCTCAC+AGG 0.544529 contig261end:+15543 None:intergenic
GGTATTAAGAAAACTATCGT+TGG 0.551126 contig261end:-17670 MsG0080048280.01.T01:five_prime_UTR
GAAGGTAGAAGGTTATAGCT+TGG 0.551961 contig261end:+15248 None:intergenic
CAAGATGAAGAAGACGATGA+AGG 0.563625 contig261end:-17691 MsG0080048280.01.T01:five_prime_UTR
TACCTTCTACTCAAGTCCGA+AGG 0.569691 contig261end:-15232 MsG0080048280.01.T01:five_prime_UTR
AAAACTTCCAAAAGTAACAA+AGG 0.570753 contig261end:+17830 None:intergenic
TGAACTTCCAGTTGAACTTG+AGG 0.572238 contig261end:-13703 MsG0080048280.01.T01:five_prime_UTR
GCATAAACGAGAACAGCCTC+TGG 0.572985 contig261end:-13600 MsG0080048280.01.T01:five_prime_UTR
GGATCTGAGTGCTTTGTCAA+AGG 0.583517 contig261end:-17185 MsG0080048280.01.T01:five_prime_UTR
TAATGTAACTTTCAATGTCG+AGG 0.587478 contig261end:-17206 MsG0080048280.01.T01:five_prime_UTR
TCACAGGGTCCCCAATGTCT+CGG 0.598224 contig261end:+15559 None:intergenic
AAATATTTGAAGTCGTTGCA+TGG 0.603177 contig261end:-17733 MsG0080048280.01.T01:five_prime_UTR
ACCTTCTACTCAAGTCCGAA+GGG 0.608313 contig261end:-15231 MsG0080048280.01.T01:five_prime_UTR
GTTTATGCGATAGAATCGGC+TGG 0.616795 contig261end:+13615 None:intergenic
TGGTGCTCAGCAGAGACCAG+AGG 0.622246 contig261end:+13584 None:intergenic
TTCTGTTTACCGAGACATTG+GGG 0.626268 contig261end:-15568 MsG0080048280.01.T01:intron
GGGGAAATAGTTATGGAAGG+AGG 0.627308 contig261end:-15316 MsG0080048280.01.T01:five_prime_UTR
TCTGAGTGCTTTGTCAAAGG+AGG 0.637865 contig261end:-17182 MsG0080048280.01.T01:five_prime_UTR
TACGATTATCAGCACCATGT+CGG 0.646336 contig261end:+17638 None:intergenic
GTTGGAAGAAAGCACCGACA+TGG 0.649199 contig261end:-17652 MsG0080048280.01.T01:five_prime_UTR
CAACCAATCAACTAATTCTG+GGG 0.649259 contig261end:+16042 None:intergenic
GAGACATTGGGGACCCTGTG+AGG 0.661128 contig261end:-15557 MsG0080048280.01.T01:intron
TAACACTATAATTCCTCACA+GGG 0.667581 contig261end:+15544 None:intergenic
TTGCATGGTGGAGATGAAGA+CGG 0.669329 contig261end:-17718 MsG0080048280.01.T01:five_prime_UTR
TATTTGAAGTCGTTGCATGG+TGG 0.689833 contig261end:-17730 MsG0080048280.01.T01:five_prime_UTR
TTGGTTGTCAGAATTAAACG+AGG 0.733976 contig261end:-16026 MsG0080048280.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATTATGTTGTGAA+GGG + contig261end:17443-17462 None:intergenic 15.0%
!! AAATAAATTGTAACACAATA+TGG + contig261end:13810-13829 None:intergenic 15.0%
!! AATTCATTAATGAAATAAAC+TGG - contig261end:15078-15097 MsG0080048280.01.T01:intron 15.0%
!! TAAAAAAACAAAATCAGATT+TGG + contig261end:10924-10943 None:intergenic 15.0%
!! TAAATAAAATTATGTTGTGA+AGG + contig261end:17444-17463 None:intergenic 15.0%
!! TATTTATTTATCGTTGTAAA+AGG - contig261end:15771-15790 MsG0080048280.01.T01:intron 15.0%
!!! ATAATCAAATTTTAATCATC+AGG + contig261end:10741-10760 None:intergenic 15.0%
!!! GTAATCTTTTATATTTTTAC+AGG - contig261end:11930-11949 MsG0080048280.01.T01:intron 15.0%
!!! TAACTTGTATAATTATTGAT+TGG - contig261end:18705-18724 MsG0080048280.01.T01:five_prime_UTR 15.0%
!!! TAATGAGAAATTAACTTTTA+AGG - contig261end:11800-11819 MsG0080048280.01.T01:intron 15.0%
!!! TAATGGTGTAATTTAAAATT+TGG + contig261end:17383-17402 None:intergenic 15.0%
!!! TTTTCTTTTTCAATCAATTT+TGG + contig261end:12462-12481 None:intergenic 15.0%
!!! TTTTTTTTTTTTCTGTTTAC+AGG - contig261end:10999-11018 MsG0080048280.01.T01:intron 15.0%
!! AAAAAGAAAAGAATGTAAGA+AGG - contig261end:12472-12491 MsG0080048280.01.T01:intron 20.0%
!! AAACTAAAATCTAGATAAGT+TGG - contig261end:17499-17518 MsG0080048280.01.T01:intron 20.0%
!! AAATTGCAATAAAAGAACAA+AGG - contig261end:11724-11743 MsG0080048280.01.T01:intron 20.0%
!! AAGAGAAACAATAAAAAGTA+AGG + contig261end:11638-11657 None:intergenic 20.0%
!! AATAGAACATATTGTAATGT+AGG + contig261end:18647-18666 None:intergenic 20.0%
!! AATGGTTCAACTTAATTTAT+TGG - contig261end:15180-15199 MsG0080048280.01.T01:five_prime_UTR 20.0%
!! AATTGCAATAAAAGAACAAA+GGG - contig261end:11725-11744 MsG0080048280.01.T01:intron 20.0%
!! AGAGAAACAATAAAAAGTAA+GGG + contig261end:11637-11656 None:intergenic 20.0%
!! AGGTGTATTAGAAAAATTTA+AGG - contig261end:17252-17271 MsG0080048280.01.T01:intron 20.0%
!! GTCAAATTTAAATGTTCAAT+TGG - contig261end:18435-18454 MsG0080048280.01.T01:intron 20.0%
!! TAAAGTCGAATTTATTCAAA+AGG - contig261end:11362-11381 MsG0080048280.01.T01:intron 20.0%
!! TGTATATACTCAAGATATTA+AGG - contig261end:12380-12399 MsG0080048280.01.T01:intron 20.0%
!! TTAGAAAATATTCATAGCAT+TGG - contig261end:14316-14335 MsG0080048280.01.T01:intron 20.0%
!! TTATTTATGTTGTTCTACTT+GGG - contig261end:13771-13790 MsG0080048280.01.T01:intron 20.0%
!! TTCTGATAAATATACATGTT+TGG - contig261end:11390-11409 MsG0080048280.01.T01:intron 20.0%
!! TTTGAGCATAATATTTGTAA+AGG - contig261end:11569-11588 MsG0080048280.01.T01:intron 20.0%
!!! ATAATTTTCATTTTGTGAAG+CGG - contig261end:12678-12697 MsG0080048280.01.T01:intron 20.0%
!!! ATGTTTTAGATAATTACACA+CGG + contig261end:11601-11620 None:intergenic 20.0%
!!! GTCATTTCTAATCATTTTTT+CGG + contig261end:12436-12455 None:intergenic 20.0%
!!! TAAACAACTTTGAATTTTAG+AGG - contig261end:12240-12259 MsG0080048280.01.T01:intron 20.0%
!!! TAATTTTACAGTATTATTGC+CGG - contig261end:15133-15152 MsG0080048280.01.T01:intron 20.0%
!!! TATATCTTATTTCTAAGACT+TGG + contig261end:17350-17369 None:intergenic 20.0%
!!! TATTGACTATCAAATGAAAA+TGG + contig261end:14492-14511 None:intergenic 20.0%
!!! TCATTTTTTCAGTTTCAATT+TGG + contig261end:12208-12227 None:intergenic 20.0%
!!! TCTAAAATTCAAAGTTGTTT+AGG + contig261end:12241-12260 None:intergenic 20.0%
!!! TTAATTTCCTTTGTTACTTT+TGG - contig261end:11332-11351 MsG0080048280.01.T01:intron 20.0%
!!! TTTGATATTTCTATGCAATT+AGG + contig261end:15368-15387 None:intergenic 20.0%
!!! TTTTACAAACAAGTTGAAAA+AGG - contig261end:18033-18052 MsG0080048280.01.T01:intron 20.0%
! AAAAAAATGTCTGACCAAAT+TGG + contig261end:16788-16807 None:intergenic 25.0%
! AAAAAATGTCTGACCAAAAT+TGG + contig261end:16443-16462 None:intergenic 25.0%
! AAAACTTCCAAAAGTAACAA+AGG + contig261end:11342-11361 None:intergenic 25.0%
! AAACAAAAAAATCATGCTGA+AGG + contig261end:12717-12736 None:intergenic 25.0%
! AACATCTTTGGCATATTAAA+TGG - contig261end:18734-18753 MsG0080048280.01.T01:five_prime_UTR 25.0%
! AATTAACCAAACAAAGTTGA+AGG + contig261end:10973-10992 None:intergenic 25.0%
! AATTCAGCCTAGAAAAATAT+GGG + contig261end:13021-13040 None:intergenic 25.0%
! ACACAATCGATATATATCAA+TGG + contig261end:12059-12078 None:intergenic 25.0%
! ACACCATTATAACTACAATT+TGG - contig261end:17394-17413 MsG0080048280.01.T01:five_prime_UTR 25.0%
! AGAAAAACCTTGCTTAAAAA+TGG + contig261end:13198-13217 None:intergenic 25.0%
! AGAAGCGAATTATCTTAAAA+TGG - contig261end:17545-17564 MsG0080048280.01.T01:intron 25.0%
! ATAACCTTATCATTGAAAAC+AGG + contig261end:10894-10913 None:intergenic 25.0%
! ATTTATTTCATCTCTTGTGA+AGG - contig261end:13822-13841 MsG0080048280.01.T01:intron 25.0%
! CAAATTTGTAAGTGTTAACT+TGG - contig261end:18293-18312 MsG0080048280.01.T01:five_prime_UTR 25.0%
! CAACCAAATTGTAGTTATAA+TGG + contig261end:17400-17419 None:intergenic 25.0%
! CAACCAATATACATCAATAT+GGG - contig261end:16974-16993 MsG0080048280.01.T01:intron 25.0%
! CAAGATATTAAGGACATAAA+TGG - contig261end:12390-12409 MsG0080048280.01.T01:intron 25.0%
! CAATAAACTTCAATTACTGT+AGG + contig261end:13330-13349 None:intergenic 25.0%
! CCAAAGATATTCAAATAAGA+TGG + contig261end:14998-15017 None:intergenic 25.0%
! CTTATTTATGTTGTTCTACT+TGG - contig261end:13770-13789 MsG0080048280.01.T01:intron 25.0%
! GAAAAAATCAGATTCCTTAA+AGG - contig261end:15674-15693 MsG0080048280.01.T01:intron 25.0%
! GAAAAACCTTGCTTAAAAAT+GGG + contig261end:13197-13216 None:intergenic 25.0%
! GAGGAAAAATTGAAACAAAA+GGG - contig261end:15882-15901 MsG0080048280.01.T01:intron 25.0%
! GATGAATGACTTTATGTAAT+GGG + contig261end:14396-14415 None:intergenic 25.0%
! GTATTAGGGTTTATGAATTA+TGG + contig261end:10446-10465 None:intergenic 25.0%
! GTGAAAAAACTAATACAGAA+TGG - contig261end:10585-10604 MsG0080048280.01.T01:CDS 25.0%
! TACTAAATGTTGTCAAACAA+TGG - contig261end:14190-14209 MsG0080048280.01.T01:intron 25.0%
! TAGTTTCATATTGAAGAAGA+TGG + contig261end:18141-18160 None:intergenic 25.0%
! TATGAATTATGGAGATAACT+AGG + contig261end:10435-10454 None:intergenic 25.0%
! TCTTCTTCAATATGAAACTA+AGG - contig261end:18141-18160 MsG0080048280.01.T01:five_prime_UTR 25.0%
! TGAGGAAAAATTGAAACAAA+AGG - contig261end:15881-15900 MsG0080048280.01.T01:intron 25.0%
! TTTATATGCATGTATAAGCT+GGG - contig261end:11289-11308 MsG0080048280.01.T01:CDS 25.0%
! TTTCAAGAGTAAGCATATAT+TGG - contig261end:12178-12197 MsG0080048280.01.T01:intron 25.0%
!! ACTCATTGAGATTTTATTGA+TGG - contig261end:16165-16184 MsG0080048280.01.T01:intron 25.0%
!! AGAGTTGTCTTTTTATATTG+AGG + contig261end:16754-16773 None:intergenic 25.0%
!! ATCTTTGGTTTCTTGTATTA+TGG - contig261end:15010-15029 MsG0080048280.01.T01:intron 25.0%
!! CCATCTTATTTGAATATCTT+TGG - contig261end:14995-15014 MsG0080048280.01.T01:intron 25.0%
!! CGTGGTTTTCATAATATTTT+TGG + contig261end:13366-13385 None:intergenic 25.0%
!! CTTGAATAATTGTAACTTGT+TGG - contig261end:11655-11674 MsG0080048280.01.T01:intron 25.0%
!! TAGAGTTGTCTTTTATATTG+AGG + contig261end:16410-16429 None:intergenic 25.0%
!! TTGTTTCAATTTTTCCTCAA+GGG + contig261end:15880-15899 None:intergenic 25.0%
!! TTTGTTTCAATTTTTCCTCA+AGG + contig261end:15881-15900 None:intergenic 25.0%
!! TTTTATATGCATGTATAAGC+TGG - contig261end:11288-11307 MsG0080048280.01.T01:CDS 25.0%
!! TTTTCAACCCATATTTTTCT+AGG - contig261end:13011-13030 MsG0080048280.01.T01:intron 25.0%
!! TTTTTGAACTCGAGATTAAA+AGG + contig261end:16258-16277 None:intergenic 25.0%
!!! AATCAGTTTTTTTCATCTGT+AGG + contig261end:12160-12179 None:intergenic 25.0%
!!! AATTAACCCATTTTTAAGCA+AGG - contig261end:13188-13207 MsG0080048280.01.T01:intron 25.0%
!!! ATTTTAATCATCAGGTGAAA+AGG + contig261end:10733-10752 None:intergenic 25.0%
!!! CAAAGCAATTTGTTAGAATT+CGG + contig261end:14150-14169 None:intergenic 25.0%
!!! CTAATCATTTTTTCGGTTTT+GGG + contig261end:12429-12448 None:intergenic 25.0%
!!! CTTTTTCAATCAATTTTGGT+AGG + contig261end:12458-12477 None:intergenic 25.0%
!!! GCATGATTTTTTTGTTTTGT+TGG - contig261end:12720-12739 MsG0080048280.01.T01:intron 25.0%
!!! GTACTTCATGTTTAAGTTTT+TGG - contig261end:14620-14639 MsG0080048280.01.T01:intron 25.0%
!!! GTTTGGTTTGTTTAGTAATT+AGG - contig261end:11407-11426 MsG0080048280.01.T01:intron 25.0%
!!! TACCTAAGCAATTTTAACAT+TGG + contig261end:15319-15338 None:intergenic 25.0%
!!! TATATTTTTACAGGATGCAT+CGG - contig261end:11939-11958 MsG0080048280.01.T01:intron 25.0%
!!! TCTAATCATTTTTTCGGTTT+TGG + contig261end:12430-12449 None:intergenic 25.0%
!!! TTCTGTATTAGTTTTTTCAC+CGG + contig261end:10585-10604 None:intergenic 25.0%
!!! TTTTTAACTTTTCTGTACTG+TGG - contig261end:14967-14986 MsG0080048280.01.T01:intron 25.0%
AAAGAGACGCAAAAAATGAA+AGG + contig261end:13557-13576 None:intergenic 30.0%
AAATCAGATTCCTTAAAGGA+TGG - contig261end:15678-15697 MsG0080048280.01.T01:intron 30.0%
AACCTCTTCAAGTGAAAATT+TGG - contig261end:18094-18113 MsG0080048280.01.T01:five_prime_UTR 30.0%
AACTAAAGTTAGCAATAGTC+AGG + contig261end:17702-17721 None:intergenic 30.0%
AATATGGGAACTAAACAATG+TGG - contig261end:16989-17008 MsG0080048280.01.T01:intron 30.0%
AATCGATATATATCAATGGC+AGG + contig261end:12055-12074 None:intergenic 30.0%
ACAACACTGTTAAATGAGTT+TGG - contig261end:16829-16848 MsG0080048280.01.T01:intron 30.0%
ACAACCAATCAACTAATTCT+GGG + contig261end:13131-13150 None:intergenic 30.0%
ACACAATCCAATATAAGCAT+AGG + contig261end:15211-15230 None:intergenic 30.0%
ACAGATACACTTAAAAACAG+TGG + contig261end:13662-13681 None:intergenic 30.0%
ACTAAAGTTAGCAATAGTCA+GGG + contig261end:17701-17720 None:intergenic 30.0%
ACTAATTATCCTCAAAGCAA+TGG + contig261end:12648-12667 None:intergenic 30.0%
ACTCTTCATAAACTCATTTC+AGG + contig261end:17278-17297 None:intergenic 30.0%
AGGGCAATTTATACAGAAAA+AGG + contig261end:17424-17443 None:intergenic 30.0%
AGTCTCTTGTCTATTGAAAT+GGG - contig261end:16332-16351 MsG0080048280.01.T01:intron 30.0%
AGTCTCTTGTCTATTGAAAT+TGG - contig261end:16332-16351 MsG0080048280.01.T01:intron 30.0%
ATAACACTATAATTCCTCAC+AGG + contig261end:13629-13648 None:intergenic 30.0%
ATATGGGAACTAAACAATGT+GGG - contig261end:16990-17009 MsG0080048280.01.T01:intron 30.0%
ATATTGCATACATCCTACAT+TGG - contig261end:15234-15253 MsG0080048280.01.T01:five_prime_UTR 30.0%
ATCTCTTGTGAAGGTTAAAA+AGG - contig261end:13831-13850 MsG0080048280.01.T01:intron 30.0%
ATCTTTGGCATATTAAATGG+TGG - contig261end:18737-18756 MsG0080048280.01.T01:five_prime_UTR 30.0%
ATTCACAGCTATGAATGAAA+TGG + contig261end:12135-12154 None:intergenic 30.0%
CAATTCAGCCTAGAAAAATA+TGG + contig261end:13022-13041 None:intergenic 30.0%
CATCAAAAATATATCTAGCG+AGG - contig261end:13502-13521 MsG0080048280.01.T01:intron 30.0%
CCAACCAATATACATCAATA+TGG - contig261end:16973-16992 MsG0080048280.01.T01:intron 30.0%
CCATATTGATGTATATTGGT+TGG + contig261end:16976-16995 None:intergenic 30.0%
CCGAAGACTTCAAATAAAAT+GGG + contig261end:15040-15059 None:intergenic 30.0%
CCTGTATTTACGATAATCAA+TGG - contig261end:15162-15181 MsG0080048280.01.T01:intron 30.0%
CGAGTTCAAAAAATGTCATT+GGG - contig261end:16266-16285 MsG0080048280.01.T01:intron 30.0%
CTCCAATGTTAAAATTGCTT+AGG - contig261end:15314-15333 MsG0080048280.01.T01:five_prime_UTR 30.0%
CTTCAGTGGAAAAGTTATAA+CGG + contig261end:10678-10697 None:intergenic 30.0%
GAAAGCAAAACAATATACAG+AGG - contig261end:11749-11768 MsG0080048280.01.T01:intron 30.0%
GAACTACTCATGGAAAAAAT+GGG + contig261end:13249-13268 None:intergenic 30.0%
GAGGGTAAACAATGAAATAA+GGG - contig261end:12530-12549 MsG0080048280.01.T01:intron 30.0%
GATCAAGGAATTAATGAATC+AGG - contig261end:14002-14021 MsG0080048280.01.T01:intron 30.0%
GATTGGAAACTTAACATCTT+TGG - contig261end:18722-18741 MsG0080048280.01.T01:five_prime_UTR 30.0%
GGATGAATGACTTTATGTAA+TGG + contig261end:14397-14416 None:intergenic 30.0%
GGTATTAAGAAAACTATCGT+TGG - contig261end:11499-11518 MsG0080048280.01.T01:intron 30.0%
GTACTGAAATCACTGTAAAT+CGG + contig261end:14604-14623 None:intergenic 30.0%
GTCTCTTGTCTATTGAAATT+GGG - contig261end:16333-16352 MsG0080048280.01.T01:intron 30.0%
GTTACTCTTGAGATTTATGA+TGG - contig261end:16521-16540 MsG0080048280.01.T01:intron 30.0%
GTTCCCATATTGATGTATAT+TGG + contig261end:16980-16999 None:intergenic 30.0%
TAAAAAGGGGGAAATAGTTA+TGG - contig261end:13846-13865 MsG0080048280.01.T01:intron 30.0%
TAACACTATAATTCCTCACA+GGG + contig261end:13628-13647 None:intergenic 30.0%
TAATGTAACTTTCAATGTCG+AGG - contig261end:11963-11982 MsG0080048280.01.T01:intron 30.0%
TACTGAAATCACTGTAAATC+GGG + contig261end:14603-14622 None:intergenic 30.0%
TACTTTCACTTACTCTTGAA+TGG - contig261end:18401-18420 MsG0080048280.01.T01:intron 30.0%
TAGTCTCTTGTCTATTGAAA+TGG - contig261end:16331-16350 MsG0080048280.01.T01:intron 30.0%
TATGTTTCTCTATTCACCAA+TGG + contig261end:12352-12371 None:intergenic 30.0%
TCATTGTTTACCCTCAAATT+GGG + contig261end:12525-12544 None:intergenic 30.0%
TCGAGTTCAAAAAATGTCAT+TGG - contig261end:16265-16284 MsG0080048280.01.T01:intron 30.0%
TCTAGAAGTAACTACCAATT+TGG - contig261end:16426-16445 MsG0080048280.01.T01:intron 30.0%
TCTCTTGTGAAGGTTAAAAA+GGG - contig261end:13832-13851 MsG0080048280.01.T01:intron 30.0%
TGAAATGAGTTTATGAAGAG+TGG - contig261end:17277-17296 MsG0080048280.01.T01:intron 30.0%
TGAGGGTAAACAATGAAATA+AGG - contig261end:12529-12548 MsG0080048280.01.T01:intron 30.0%
TGTAAGTATCTTACAAATGC+AGG + contig261end:16227-16246 None:intergenic 30.0%
TTAAAGGATGGTGCAAAAAA+AGG - contig261end:15690-15709 MsG0080048280.01.T01:intron 30.0%
TTAATTCCTTGATCTCTTCA+AGG + contig261end:13996-14015 None:intergenic 30.0%
TTCAAAAAATGTCATTGGGA+CGG - contig261end:16270-16289 MsG0080048280.01.T01:intron 30.0%
TTCAGATTAGCATTAGCAAA+CGG + contig261end:16133-16152 None:intergenic 30.0%
TTCATTGTTTACCCTCAAAT+TGG + contig261end:12526-12545 None:intergenic 30.0%
TTGAATATAGTGACTGCATT+TGG - contig261end:16562-16581 MsG0080048280.01.T01:intron 30.0%
TTGTCCTACTTTAGATGAAA+AGG - contig261end:12499-12518 MsG0080048280.01.T01:intron 30.0%
TTGTTCTGCAATACATTGTT+TGG - contig261end:14167-14186 MsG0080048280.01.T01:intron 30.0%
TTTGCGTCTCTTTAAACTTT+AGG - contig261end:13564-13583 MsG0080048280.01.T01:intron 30.0%
! AAATATGGGTTGAAAAGAAG+AGG + contig261end:13007-13026 None:intergenic 30.0%
! AAATATTTGAAGTCGTTGCA+TGG - contig261end:11436-11455 MsG0080048280.01.T01:intron 30.0%
! AATATGGGTTGAAAAGAAGA+GGG + contig261end:13006-13025 None:intergenic 30.0%
! AATATTTTCTAACAGTGACC+AGG + contig261end:14308-14327 None:intergenic 30.0%
! AATGCCTGTTTTCAATGATA+AGG - contig261end:10887-10906 MsG0080048280.01.T01:intron 30.0%
! ATCCAAATTTTCACTTGAAG+AGG + contig261end:18099-18118 None:intergenic 30.0%
! ATGACTTTATGTAATGGGAT+TGG + contig261end:14391-14410 None:intergenic 30.0%
! ATTACAAAACTGATTAGCCA+AGG - contig261end:12298-12317 MsG0080048280.01.T01:intron 30.0%
! ATTATCTGGTTTAGTAGCAA+AGG + contig261end:12102-12121 None:intergenic 30.0%
! ATTGAGGATGATAATGATGA+TGG - contig261end:17937-17956 MsG0080048280.01.T01:intron 30.0%
! CCATTGATTATCGTAAATAC+AGG + contig261end:15165-15184 None:intergenic 30.0%
! CTAGAAGTAACTACCAATTT+TGG - contig261end:16427-16446 MsG0080048280.01.T01:intron 30.0%
! GACTGATTCTAATATTCTAG+AGG + contig261end:13464-13483 None:intergenic 30.0%
! TATCAAATCTGAGATGTACT+CGG - contig261end:15381-15400 MsG0080048280.01.T01:intron 30.0%
! TGACTTTATGTAATGGGATT+GGG + contig261end:14390-14409 None:intergenic 30.0%
! TGATGATGACGATATTAAAC+TGG + contig261end:14726-14745 None:intergenic 30.0%
! TGCTGATAATCGTAATTTTG+AGG - contig261end:11540-11559 MsG0080048280.01.T01:intron 30.0%
! TTACAAAACTGATTAGCCAA+GGG - contig261end:12299-12318 MsG0080048280.01.T01:intron 30.0%
! TTATCTGGTTTAGTAGCAAA+GGG + contig261end:12101-12120 None:intergenic 30.0%
! TTTTGTGAACTCGAGATTAA+AGG + contig261end:16607-16626 None:intergenic 30.0%
!! AATGGATGAAAAAGTGCTTA+CGG - contig261end:11880-11899 MsG0080048280.01.T01:intron 30.0%
!! CCCATTTTATTTGAAGTCTT+CGG - contig261end:15037-15056 MsG0080048280.01.T01:intron 30.0%
!! TATGGGTATTGAAGTTGTAT+TGG + contig261end:16944-16963 None:intergenic 30.0%
!! TTTTGAGAATTACTAGGCTT+TGG + contig261end:15927-15946 None:intergenic 30.0%
!!! ATAATCGTAATTTTGAGGTG+AGG - contig261end:11545-11564 MsG0080048280.01.T01:intron 30.0%
!!! CACTTTTTCATCCATTAATG+TGG + contig261end:11876-11895 None:intergenic 30.0%
!!! TTTTTGGTTGCTTTTCTTTC+TGG - contig261end:14636-14655 MsG0080048280.01.T01:intron 30.0%
!!! TTTTTTTGCACCATCCTTTA+AGG + contig261end:15691-15710 None:intergenic 30.0%
AAAAAATGTAGACGGTCATC+AGG + contig261end:14462-14481 None:intergenic 35.0%
AAAAATGTAGACGGTCATCA+GGG + contig261end:14461-14480 None:intergenic 35.0%
AACAACCACACAAGTGTTTA+AGG + contig261end:17125-17144 None:intergenic 35.0%
AAGCCACCTTAACACAAAAA+GGG + contig261end:17828-17847 None:intergenic 35.0%
AAGGCCATAACAGCAATAAA+GGG + contig261end:12974-12993 None:intergenic 35.0%
AATCATCATATGTTGCAAGC+TGG + contig261end:16054-16073 None:intergenic 35.0%
AATCCTGACAAAATTGGATC+AGG - contig261end:12946-12965 MsG0080048280.01.T01:intron 35.0%
AATGTTATGTTGCCTAAGCA+TGG - contig261end:11843-11862 MsG0080048280.01.T01:intron 35.0%
AATTTCTTCCTCTTCCTTTG+GGG + contig261end:11709-11728 None:intergenic 35.0%
ACAATGAGCATGCTTTCATT+AGG + contig261end:13392-13411 None:intergenic 35.0%
ACCTTAACACAAAAAGGGAT+CGG + contig261end:17823-17842 None:intergenic 35.0%
ACTGAAATCACTGTAAATCG+GGG + contig261end:14602-14621 None:intergenic 35.0%
AGAATTCGGCTAAGATATTG+CGG + contig261end:14136-14155 None:intergenic 35.0%
AGACAAGAGACTAATATCCT+AGG + contig261end:16324-16343 None:intergenic 35.0%
AGAGAGAAGCAATAAAGGTT+TGG + contig261end:14552-14571 None:intergenic 35.0%
AGATAACATGCAGTAAAAGC+AGG + contig261end:16384-16403 None:intergenic 35.0%
AGCAAATGAACGTTCTGTAT+AGG - contig261end:12010-12029 MsG0080048280.01.T01:intron 35.0%
AGGAAGAAAAGCAAAAGATC+AGG - contig261end:15710-15729 MsG0080048280.01.T01:intron 35.0%
AGTACCTTGTAGTTCTTTCT+AGG + contig261end:18385-18404 None:intergenic 35.0%
AGTACTATTCAAGATTTCGC+CGG - contig261end:10563-10582 MsG0080048280.01.T01:CDS 35.0%
AGTTCCAAAACTATGTGAAG+AGG - contig261end:13264-13283 MsG0080048280.01.T01:CDS 35.0%
ATAATGCTTCCTAGAAACTG+AGG - contig261end:17657-17676 MsG0080048280.01.T01:five_prime_UTR 35.0%
ATACAAAAAGACCCAAGCAT+TGG - contig261end:11222-11241 MsG0080048280.01.T01:CDS 35.0%
ATGAAGAGGACATTGAAAGT+GGG - contig261end:17992-18011 MsG0080048280.01.T01:intron 35.0%
ATGATGCTGTGGTTGTTAAT+GGG - contig261end:16077-16096 MsG0080048280.01.T01:intron 35.0%
ATGGATGCAATGTCATTATC+TGG + contig261end:12116-12135 None:intergenic 35.0%
ATTCTGTTTACCGAGACATT+GGG - contig261end:13600-13619 MsG0080048280.01.T01:five_prime_UTR 35.0%
CAAAAGATAGTCATGAGTGA+GGG - contig261end:16860-16879 MsG0080048280.01.T01:intron 35.0%
CAACCAATCAACTAATTCTG+GGG + contig261end:13130-13149 None:intergenic 35.0%
CAATAGCTGAGATTTCTACT+GGG + contig261end:12568-12587 None:intergenic 35.0%
CAATTTCTTCCTCTTCCTTT+GGG + contig261end:11710-11729 None:intergenic 35.0%
CATGACAACAGTAACAAGAA+AGG + contig261end:18463-18482 None:intergenic 35.0%
CATTGTGTTAAAAACCAGAC+CGG - contig261end:14231-14250 MsG0080048280.01.T01:intron 35.0%
CGAGTTCACAAAATGTCATT+GGG - contig261end:16614-16633 MsG0080048280.01.T01:intron 35.0%
CTCTTGTGAAGGTTAAAAAG+GGG - contig261end:13833-13852 MsG0080048280.01.T01:intron 35.0%
CTGCACATGTAAAATCATCA+AGG + contig261end:12591-12610 None:intergenic 35.0%
GAATCAGCATTAATGTCAAG+TGG + contig261end:10843-10862 None:intergenic 35.0%
GAATCCTAGAAAGAACTACA+AGG - contig261end:18378-18397 MsG0080048280.01.T01:intron 35.0%
GACAACCAATCAACTAATTC+TGG + contig261end:13132-13151 None:intergenic 35.0%
GACAAGAGACTAATATCCTA+GGG + contig261end:16323-16342 None:intergenic 35.0%
GAGAGAAGCAATAAAGGTTT+GGG + contig261end:14551-14570 None:intergenic 35.0%
GATAGTTGCATTAATTCCAG+TGG + contig261end:18585-18604 None:intergenic 35.0%
GCACTGTCAAAAAATGTAGA+CGG + contig261end:14470-14489 None:intergenic 35.0%
GCATTATGGATAATAGCGAA+AGG + contig261end:17644-17663 None:intergenic 35.0%
GCCGAAGACTTCAAATAAAA+TGG + contig261end:15041-15060 None:intergenic 35.0%
GGAAATGCCTATGCTTATAT+TGG - contig261end:15201-15220 MsG0080048280.01.T01:five_prime_UTR 35.0%
GGAACTACTCATGGAAAAAA+TGG + contig261end:13250-13269 None:intergenic 35.0%
GGTCAAGGCATATAAAATCT+GGG + contig261end:14418-14437 None:intergenic 35.0%
GGTTCTTACTTGAATTCATC+AGG - contig261end:18244-18263 MsG0080048280.01.T01:intron 35.0%
GTGTTGAATCCTGACAAAAT+TGG - contig261end:12940-12959 MsG0080048280.01.T01:intron 35.0%
GTTGACGGTTATACTTCAAT+CGG - contig261end:14693-14712 MsG0080048280.01.T01:intron 35.0%
TAAGGCCATAACAGCAATAA+AGG + contig261end:12975-12994 None:intergenic 35.0%
TAATACAGAATGGCGAAGAA+AGG - contig261end:10595-10614 MsG0080048280.01.T01:CDS 35.0%
TATATATCAATGGCAGGATG+AGG + contig261end:12049-12068 None:intergenic 35.0%
TATGGATAATAGCGAAAGGA+AGG + contig261end:17640-17659 None:intergenic 35.0%
TATTCACCAATGGTTTCAGA+AGG + contig261end:12342-12361 None:intergenic 35.0%
TATTCTGTTTACCGAGACAT+TGG - contig261end:13599-13618 MsG0080048280.01.T01:five_prime_UTR 35.0%
TCAAAAAATGTCATTGGGAC+GGG - contig261end:16271-16290 MsG0080048280.01.T01:intron 35.0%
TCAAAAGATAGTCATGAGTG+AGG - contig261end:16859-16878 MsG0080048280.01.T01:intron 35.0%
TCAGAATAGAGAGCAAATAC+CGG + contig261end:10540-10559 None:intergenic 35.0%
TCGAGTTCACAAAATGTCAT+TGG - contig261end:16613-16632 MsG0080048280.01.T01:intron 35.0%
TCTCGTTTATGCGATAGAAT+CGG + contig261end:15561-15580 None:intergenic 35.0%
TCTTCGGCTTTCTTGTATTA+TGG - contig261end:15053-15072 MsG0080048280.01.T01:intron 35.0%
TCTTGTGAAGGTTAAAAAGG+GGG - contig261end:13834-13853 MsG0080048280.01.T01:intron 35.0%
TGAACATTGCTGCTAAATAG+CGG - contig261end:14102-14121 MsG0080048280.01.T01:intron 35.0%
TGCTAATCTGAAGAAACTCA+AGG - contig261end:16141-16160 MsG0080048280.01.T01:intron 35.0%
TGGCATATCAGACATCTAAA+AGG + contig261end:12754-12773 None:intergenic 35.0%
TGGTATCAGAGTCAGATTAA+GGG + contig261end:17083-17102 None:intergenic 35.0%
TGGTCAAGGCATATAAAATC+TGG + contig261end:14419-14438 None:intergenic 35.0%
TTAACTGTTGCACCTTAACA+TGG - contig261end:15802-15821 MsG0080048280.01.T01:intron 35.0%
TTCACAAAATGTCATTGGGA+CGG - contig261end:16618-16637 MsG0080048280.01.T01:intron 35.0%
TTCATCTCAACTACATTGCT+AGG + contig261end:15657-15676 None:intergenic 35.0%
TTGGTTGTCAGAATTAAACG+AGG - contig261end:13143-13162 MsG0080048280.01.T01:intron 35.0%
TTGTCAAACAATGGCTATAG+TGG - contig261end:14199-14218 MsG0080048280.01.T01:intron 35.0%
! AAGAAGAGGGTGTATATGTA+AGG + contig261end:12993-13012 None:intergenic 35.0%
! AGTAACCTTTGAGTTTCTTC+AGG + contig261end:16507-16526 None:intergenic 35.0%
! GCTTTTCCTTCAACTTTGTT+TGG - contig261end:10964-10983 MsG0080048280.01.T01:CDS 35.0%
! TAACTTTTCCACTGAAGACA+TGG - contig261end:10681-10700 MsG0080048280.01.T01:intron 35.0%
! TCAACCTCTTCACATAGTTT+TGG + contig261end:13271-13290 None:intergenic 35.0%
! TCATTGTGAATGACTTGGAA+TGG - contig261end:13405-13424 MsG0080048280.01.T01:intron 35.0%
! TGATAATGATGACACTGATG+AGG - contig261end:11026-11045 MsG0080048280.01.T01:intron 35.0%
! TGTTACTGTTGTCATGCTTT+TGG - contig261end:18467-18486 MsG0080048280.01.T01:intron 35.0%
! TTACAGTATTATTGCCGGTT+TGG - contig261end:15138-15157 MsG0080048280.01.T01:intron 35.0%
!! AGATTACCTTCTGAAACCAT+TGG - contig261end:12333-12352 MsG0080048280.01.T01:intron 35.0%
!! ATGGATGAAAAAGTGCTTAC+GGG - contig261end:11881-11900 MsG0080048280.01.T01:intron 35.0%
!! CAACATGAAGTCTGCTTTTA+CGG - contig261end:16715-16734 MsG0080048280.01.T01:intron 35.0%
!! GAACGCTTTTGAGAATTACT+AGG + contig261end:15933-15952 None:intergenic 35.0%
!! TAAGGTTTGTTTGCTTTTGC+AGG - contig261end:18159-18178 MsG0080048280.01.T01:intron 35.0%
!! TCAGTTTCTAGGAAGCATTA+TGG + contig261end:17658-17677 None:intergenic 35.0%
!! TGATGATGGTGATGATCAAA+TGG - contig261end:17951-17970 MsG0080048280.01.T01:intron 35.0%
!! TTGAATTTTAGAGGAGCGAA+TGG - contig261end:12249-12268 MsG0080048280.01.T01:intron 35.0%
!!! AGGTCCTGGTTTTAAAACAA+GGG - contig261end:14799-14818 MsG0080048280.01.T01:intron 35.0%
!!! ATAGCCCTTGTTTTAAAACC+AGG + contig261end:14806-14825 None:intergenic 35.0%
!!! CATAGTTTTGGAACTACTCA+TGG + contig261end:13259-13278 None:intergenic 35.0%
!!! TGATGATTTTGATGATGCTG+TGG - contig261end:16066-16085 MsG0080048280.01.T01:intron 35.0%
AAAAGCCGTTAAGAATCGCA+AGG - contig261end:18513-18532 MsG0080048280.01.T01:five_prime_UTR 40.0%
AAAAGTTAGAGCTTCCCTTG+AGG - contig261end:15863-15882 MsG0080048280.01.T01:intron 40.0%
AAAAGTTATAACGGTCGCGT+CGG + contig261end:10669-10688 None:intergenic 40.0%
AAAATCCACGCTAAGTGTGT+AGG + contig261end:17039-17058 None:intergenic 40.0%
AAAGCCGTTAAGAATCGCAA+GGG - contig261end:18514-18533 MsG0080048280.01.T01:five_prime_UTR 40.0%
AACACTTGTGTGGTTGTTCT+TGG - contig261end:17127-17146 MsG0080048280.01.T01:intron 40.0%
AACTTACTCGTTGTTGAGCT+AGG - contig261end:17222-17241 MsG0080048280.01.T01:intron 40.0%
AAGCGAGAGAGAAGCAATAA+AGG + contig261end:14557-14576 None:intergenic 40.0%
AAGGGGGAAATAGTTATGGA+AGG - contig261end:13850-13869 MsG0080048280.01.T01:intron 40.0%
AATGATGACACTGATGAGGA+CGG - contig261end:11030-11049 MsG0080048280.01.T01:intron 40.0%
AATGGCATATTGCCGGAAAA+TGG - contig261end:13423-13442 MsG0080048280.01.T01:intron 40.0%
ACAACTTCAATACCCATACG+AGG - contig261end:16946-16965 MsG0080048280.01.T01:intron 40.0%
AGAATGTCCTCAAGTTCAAC+TGG + contig261end:15476-15495 None:intergenic 40.0%
AGATGAAAAGGCCCAATTTG+AGG - contig261end:12511-12530 MsG0080048280.01.T01:intron 40.0%
AGATTAAGGGTAGCAATGTG+GGG + contig261end:17070-17089 None:intergenic 40.0%
AGCAAACGGTGAAACTTTAC+TGG + contig261end:16119-16138 None:intergenic 40.0%
AGCAATATTCAGCAGAGATG+TGG - contig261end:12894-12913 MsG0080048280.01.T01:intron 40.0%
AGCAGTGATGAGGTTCAAAA+TGG + contig261end:18676-18695 None:intergenic 40.0%
AGTGACTATCTTCTCTTTGC+AGG - contig261end:13100-13119 MsG0080048280.01.T01:CDS 40.0%
AGTGATGAGGTTCAAAATGG+TGG + contig261end:18673-18692 None:intergenic 40.0%
AGTGTTAGTGTTTGTCTGGT+TGG + contig261end:16889-16908 None:intergenic 40.0%
ATATTGCCGGAAAATGGTTC+CGG - contig261end:13429-13448 MsG0080048280.01.T01:intron 40.0%
ATCACTACAACTGCTTCTTC+TGG + contig261end:15608-15627 None:intergenic 40.0%
ATTCGCAGTTCATAAGCAGA+GGG - contig261end:10809-10828 MsG0080048280.01.T01:CDS 40.0%
CAACTTCAATACCCATACGA+GGG - contig261end:16947-16966 MsG0080048280.01.T01:intron 40.0%
CAAGATGAAGAAGACGATGA+AGG - contig261end:11478-11497 MsG0080048280.01.T01:intron 40.0%
CAGATTAAGGGTAGCAATGT+GGG + contig261end:17071-17090 None:intergenic 40.0%
CATGCTCATTGTGAATGACT+TGG - contig261end:13400-13419 MsG0080048280.01.T01:intron 40.0%
CATGCTTTCATTAGGTTACG+TGG + contig261end:13384-13403 None:intergenic 40.0%
CATTATCTTCGTCTTCCACA+AGG + contig261end:11785-11804 None:intergenic 40.0%
CTGAAATCACTGTAAATCGG+GGG + contig261end:14601-14620 None:intergenic 40.0%
GAAGATGACAACACACTGTT+TGG + contig261end:14439-14458 None:intergenic 40.0%
GAAGCCACCTTAACACAAAA+AGG + contig261end:17829-17848 None:intergenic 40.0%
GAAGGTAGAAGGTTATAGCT+TGG + contig261end:13924-13943 None:intergenic 40.0%
GAAGGTTATAGCTTGGCAAT+AGG + contig261end:13917-13936 None:intergenic 40.0%
GAATATGATGGCAAGGAGAA+GGG - contig261end:11087-11106 MsG0080048280.01.T01:intron 40.0%
GACGAGGATGATGAATATGA+TGG - contig261end:11075-11094 MsG0080048280.01.T01:intron 40.0%
GAGACGCAAAAAATGAAAGG+AGG + contig261end:13554-13573 None:intergenic 40.0%
GATGAAAAGGCCCAATTTGA+GGG - contig261end:12512-12531 MsG0080048280.01.T01:intron 40.0%
GATGAAGAGGACATTGAAAG+TGG - contig261end:17991-18010 MsG0080048280.01.T01:intron 40.0%
GATGATGCTGTGGTTGTTAA+TGG - contig261end:16076-16095 MsG0080048280.01.T01:intron 40.0%
GATGGAAATATCCCAGCAAA+CGG + contig261end:18123-18142 None:intergenic 40.0%
GCAATAGCTGAGATTTCTAC+TGG + contig261end:12569-12588 None:intergenic 40.0%
GCAATTTCTTCCTCTTCCTT+TGG + contig261end:11711-11730 None:intergenic 40.0%
GCAGATGTTGGAAACAAGAA+AGG + contig261end:15999-16018 None:intergenic 40.0%
GCATGTATAAGCTGGGTTTA+GGG - contig261end:11296-11315 MsG0080048280.01.T01:CDS 40.0%
GGATGATGAATATGATGGCA+AGG - contig261end:11080-11099 MsG0080048280.01.T01:intron 40.0%
GTAAAAGCAGGACTTCATGT+TGG + contig261end:16372-16391 None:intergenic 40.0%
GTCAGTAAGTTTGCAGATGT+TGG + contig261end:16011-16030 None:intergenic 40.0%
GTCCCACATTGATAAGTTTC+CGG + contig261end:16920-16939 None:intergenic 40.0%
GTGGTATCAGAGTCAGATTA+AGG + contig261end:17084-17103 None:intergenic 40.0%
TAATTCAACCCTTACCACGT+CGG + contig261end:17320-17339 None:intergenic 40.0%
TACGATTATCAGCACCATGT+CGG + contig261end:11534-11553 None:intergenic 40.0%
TACTCATGGAAAAAATGGGC+AGG + contig261end:13245-13264 None:intergenic 40.0%
TAGTCAGGGTAATAGTTCAG+TGG + contig261end:17687-17706 None:intergenic 40.0%
TATCGTCATCATCACCAGTT+TGG - contig261end:14732-14751 MsG0080048280.01.T01:intron 40.0%
TCAATGTCCTCTTCATCATG+AGG + contig261end:17988-18007 None:intergenic 40.0%
TCACAAAATGTCATTGGGAC+GGG - contig261end:16619-16638 MsG0080048280.01.T01:intron 40.0%
TCAGATTAAGGGTAGCAATG+TGG + contig261end:17072-17091 None:intergenic 40.0%
TCGTAAATACAGGACCAAAC+CGG + contig261end:15155-15174 None:intergenic 40.0%
TGAACTTCCAGTTGAACTTG+AGG - contig261end:15466-15485 MsG0080048280.01.T01:intron 40.0%
TGAAGAGGACATTGAAAGTG+GGG - contig261end:17993-18012 MsG0080048280.01.T01:intron 40.0%
TGAATATGATGGCAAGGAGA+AGG - contig261end:11086-11105 MsG0080048280.01.T01:intron 40.0%
TGAGTCCTGAAGAAACTCAA+AGG - contig261end:16499-16518 MsG0080048280.01.T01:intron 40.0%
TGCATGTATAAGCTGGGTTT+AGG - contig261end:11295-11314 MsG0080048280.01.T01:CDS 40.0%
TGCCGGAAACTTATCAATGT+GGG - contig261end:16915-16934 MsG0080048280.01.T01:intron 40.0%
TGTTCTCATGTTGATGCCAA+CGG + contig261end:17163-17182 None:intergenic 40.0%
TTATGTTGCCTAAGCATGGT+CGG - contig261end:11847-11866 MsG0080048280.01.T01:intron 40.0%
TTCACTTGAAGAGGTTGAGT+AGG + contig261end:18090-18109 None:intergenic 40.0%
TTCTGTTTACCGAGACATTG+GGG - contig261end:13601-13620 MsG0080048280.01.T01:five_prime_UTR 40.0%
! AAAATTTGGATGCCGTTTGC+TGG - contig261end:18108-18127 MsG0080048280.01.T01:five_prime_UTR 40.0%
! AAAGCGCTATATCACTTCTC+AGG - contig261end:18223-18242 MsG0080048280.01.T01:intron 40.0%
! AAATTTGGATGCCGTTTGCT+GGG - contig261end:18109-18128 MsG0080048280.01.T01:five_prime_UTR 40.0%
! ATGGTCGGTTTCCACATTAA+TGG - contig261end:11862-11881 MsG0080048280.01.T01:intron 40.0%
! GATCCCTTTTTGTGTTAAGG+TGG - contig261end:17822-17841 MsG0080048280.01.T01:intron 40.0%
! GCTAGCATCTGTTACTTGTA+AGG - contig261end:14043-14062 MsG0080048280.01.T01:intron 40.0%
! GCTTGGGTCTTTTTGTATCT+TGG + contig261end:11220-11239 None:intergenic 40.0%
! GGGTCTTTTTGTATCTTGGA+GGG + contig261end:11216-11235 None:intergenic 40.0%
! TATTTGAAGTCGTTGCATGG+TGG - contig261end:11439-11458 MsG0080048280.01.T01:intron 40.0%
! TCCGATCCCTTTTTGTGTTA+AGG - contig261end:17819-17838 MsG0080048280.01.T01:intron 40.0%
! TGGGTCTTTTTGTATCTTGG+AGG + contig261end:11217-11236 None:intergenic 40.0%
! TTCAACCCAATCAAAGCACT+GGG - contig261end:14256-14275 MsG0080048280.01.T01:intron 40.0%
! TTTAGCTTCAGTAGCAACCT+GGG - contig261end:14671-14690 MsG0080048280.01.T01:intron 40.0%
! TTTTGTGTTAAGGTGGCTTC+TGG - contig261end:17829-17848 MsG0080048280.01.T01:intron 40.0%
!! AATCTTGACTAGTCTTCCCT+TGG + contig261end:12318-12337 None:intergenic 40.0%
!! AATTTTAGAGGAGCGAATGG+AGG - contig261end:12252-12271 MsG0080048280.01.T01:intron 40.0%
!! AGAGGAAGATTTTGACCTTG+TGG - contig261end:11767-11786 MsG0080048280.01.T01:intron 40.0%
!! CAGACTTCATGTTGTTTCTC+AGG + contig261end:16709-16728 None:intergenic 40.0%
!! GTTGTTTTGTCTGTTGAGTG+AGG + contig261end:15439-15458 None:intergenic 40.0%
!! TGGAAGTGTTAGTGTTTGTC+TGG + contig261end:16893-16912 None:intergenic 40.0%
!! TGGAGGAAATTTGGTGTTCA+CGG - contig261end:12269-12288 MsG0080048280.01.T01:intron 40.0%
!! TGGATGAAAAAGTGCTTACG+GGG - contig261end:11882-11901 MsG0080048280.01.T01:intron 40.0%
!! TGGGCCTTTTCATCTAAAGT+AGG + contig261end:12506-12525 None:intergenic 40.0%
!!! CAGGTCCTGGTTTTAAAACA+AGG - contig261end:14798-14817 MsG0080048280.01.T01:intron 40.0%
!!! TTTTAGCTTCAGTAGCAACC+TGG - contig261end:14670-14689 MsG0080048280.01.T01:intron 40.0%
AAAGTTATAACGGTCGCGTC+GGG + contig261end:10668-10687 None:intergenic 45.0%
AAATCACTGTAAATCGGGGG+TGG + contig261end:14598-14617 None:intergenic 45.0%
AACAACGTAGTGAAGAGCAG+TGG - contig261end:17179-17198 MsG0080048280.01.T01:five_prime_UTR 45.0%
AACAGAACACTGCCAATGCT+TGG + contig261end:11237-11256 None:intergenic 45.0%
ACAACGTAGTGAAGAGCAGT+GGG - contig261end:17180-17199 MsG0080048280.01.T01:five_prime_UTR 45.0%
ACAGAACACTGCCAATGCTT+GGG + contig261end:11236-11255 None:intergenic 45.0%
ACAGTCTCCTCTGGCAAAAA+GGG + contig261end:18197-18216 None:intergenic 45.0%
ACATGGCAGAAGGATCACAT+TGG - contig261end:15819-15838 MsG0080048280.01.T01:intron 45.0%
ACCTTCTACTCAAGTCCGAA+GGG - contig261end:13938-13957 MsG0080048280.01.T01:intron 45.0%
ACGAAAGTGAGAAGTAACGC+AGG + contig261end:10505-10524 None:intergenic 45.0%
ACGGAAAAGACATGAGAAGC+GGG - contig261end:17891-17910 MsG0080048280.01.T01:intron 45.0%
ACTAACTCGTAGTCGCAACA+AGG - contig261end:18348-18367 MsG0080048280.01.T01:five_prime_UTR 45.0%
AGCTGAGATTTCTACTGGGT+TGG + contig261end:12564-12583 None:intergenic 45.0%
AGGAGCGAATGGAGGAAATT+TGG - contig261end:12260-12279 MsG0080048280.01.T01:intron 45.0%
AGTCCTCCATAGTGTAAGCA+AGG + contig261end:15263-15282 None:intergenic 45.0%
ATACCCGAGAGAAACTGGTT+CGG - contig261end:10364-10383 MsG0080048280.01.T01:three_prime_UTR 45.0%
ATCTGACTCTGATACCACTG+TGG - contig261end:17086-17105 MsG0080048280.01.T01:intron 45.0%
ATTGATAAGTTTCCGGCAGG+TGG + contig261end:16913-16932 None:intergenic 45.0%
CACATTGATAAGTTTCCGGC+AGG + contig261end:16916-16935 None:intergenic 45.0%
CATCGTGACTATCTTGGCAA+TGG + contig261end:12774-12793 None:intergenic 45.0%
CCTCTTCATCATGAGGTACA+AGG + contig261end:17981-18000 None:intergenic 45.0%
CCTTGTACCTCATGATGAAG+AGG - contig261end:17978-17997 MsG0080048280.01.T01:intron 45.0%
CGAAAGTGAGAAGTAACGCA+GGG + contig261end:10504-10523 None:intergenic 45.0%
CTCCTGATCTGATACTTCGA+CGG + contig261end:18607-18626 None:intergenic 45.0%
CTGCCCCAGAATTAGTTGAT+TGG - contig261end:13124-13143 MsG0080048280.01.T01:intron 45.0%
CTGCCGGAAACTTATCAATG+TGG - contig261end:16914-16933 MsG0080048280.01.T01:intron 45.0%
CTGTAGATGTCGAAGAACAG+AGG - contig261end:18325-18344 MsG0080048280.01.T01:five_prime_UTR 45.0%
CTGTCCCTTGCGATTCTTAA+CGG + contig261end:18521-18540 None:intergenic 45.0%
CTTCAACCCAATCAAAGCAC+TGG - contig261end:14255-14274 MsG0080048280.01.T01:intron 45.0%
CTTCGACATCTACAGCACAT+TGG + contig261end:18320-18339 None:intergenic 45.0%
CTTTCGTCTTCTTCAACCTC+CGG - contig261end:10518-10537 MsG0080048280.01.T01:CDS 45.0%
GAAAGTGAGAAGTAACGCAG+GGG + contig261end:10503-10522 None:intergenic 45.0%
GAACCTCATCACTGCTTAGA+TGG - contig261end:18680-18699 MsG0080048280.01.T01:five_prime_UTR 45.0%
GAAGAGGACATTGAAAGTGG+GGG - contig261end:17994-18013 MsG0080048280.01.T01:intron 45.0%
GAATAGAGAGCAAATACCGG+AGG + contig261end:10537-10556 None:intergenic 45.0%
GACAACACACTGTTTGGTCA+AGG + contig261end:14433-14452 None:intergenic 45.0%
GACGGAAAAGACATGAGAAG+CGG - contig261end:17890-17909 MsG0080048280.01.T01:intron 45.0%
GACGTGGTAAGGGTTGAATT+AGG - contig261end:17319-17338 MsG0080048280.01.T01:intron 45.0%
GACTTGGAATGGCATATTGC+CGG - contig261end:13416-13435 MsG0080048280.01.T01:intron 45.0%
GATCAGCTATGCATCCAAAC+TGG + contig261end:14749-14768 None:intergenic 45.0%
GATTCGCAGTTCATAAGCAG+AGG - contig261end:10808-10827 MsG0080048280.01.T01:CDS 45.0%
GCTAACCCAGTGCTTTGATT+GGG + contig261end:14264-14283 None:intergenic 45.0%
GGACTTGAGTAGAAGGTAGA+AGG + contig261end:13935-13954 None:intergenic 45.0%
GGATCTGAGTGCTTTGTCAA+AGG - contig261end:11984-12003 MsG0080048280.01.T01:intron 45.0%
GGGGAAATAGTTATGGAAGG+AGG - contig261end:13853-13872 MsG0080048280.01.T01:intron 45.0%
GTAAGCAAGGCTACCAATGT+AGG + contig261end:15250-15269 None:intergenic 45.0%
GTGAAGCTATACCCATTAGC+TGG + contig261end:15960-15979 None:intergenic 45.0%
GTGATCCTTCTGCCATGTTA+AGG + contig261end:15817-15836 None:intergenic 45.0%
GTTTATGCGATAGAATCGGC+TGG + contig261end:15557-15576 None:intergenic 45.0%
TACAGAATGGCGAAGAAAGG+AGG - contig261end:10598-10617 MsG0080048280.01.T01:CDS 45.0%
TACCTTCTACTCAAGTCCGA+AGG - contig261end:13937-13956 MsG0080048280.01.T01:intron 45.0%
TATTGCCGGAAAATGGTTCC+GGG - contig261end:13430-13449 MsG0080048280.01.T01:intron 45.0%
TCACGAATAGCGTCTCTCTT+AGG + contig261end:17868-17887 None:intergenic 45.0%
TCCTAGCATCGTGACTATCT+TGG + contig261end:12780-12799 None:intergenic 45.0%
TCTGACTCTGATACCACTGT+GGG - contig261end:17087-17106 MsG0080048280.01.T01:intron 45.0%
TCTGAGTGCTTTGTCAAAGG+AGG - contig261end:11987-12006 MsG0080048280.01.T01:intron 45.0%
TCTTCAAGGCGAGCTATTAC+AGG + contig261end:13982-14001 None:intergenic 45.0%
TGAAGTATAACCGTCAACCC+AGG + contig261end:14691-14710 None:intergenic 45.0%
TGTGGTTGTTCTTGGTCCAA+TGG - contig261end:17135-17154 MsG0080048280.01.T01:intron 45.0%
TTGCACCTTAACATGGCAGA+AGG - contig261end:15809-15828 MsG0080048280.01.T01:intron 45.0%
! ATCCGTCGAAGTATCAGATC+AGG - contig261end:18602-18621 MsG0080048280.01.T01:five_prime_UTR 45.0%
! GCTACAATCAAGTGATGACG+AGG - contig261end:11683-11702 MsG0080048280.01.T01:intron 45.0%
! TAGCCTTGCTTACACTATGG+AGG - contig261end:15257-15276 MsG0080048280.01.T01:five_prime_UTR 45.0%
! TCGGTGTTTGATTGTACCCT+AGG - contig261end:16304-16323 MsG0080048280.01.T01:intron 45.0%
! TGCTGATTGCCATTGCTTTG+AGG - contig261end:12636-12655 MsG0080048280.01.T01:intron 45.0%
! TGGTAGCCTTGCTTACACTA+TGG - contig261end:15254-15273 MsG0080048280.01.T01:five_prime_UTR 45.0%
! TTGCATGGTGGAGATGAAGA+CGG - contig261end:11451-11470 MsG0080048280.01.T01:intron 45.0%
!! AGATTTCTACTGGGTTGGTC+AGG + contig261end:12559-12578 None:intergenic 45.0%
!! CAATCAAAGCACTGGGTTAG+CGG - contig261end:14263-14282 MsG0080048280.01.T01:intron 45.0%
!! CAGTGCTTTGATTGGGTTGA+AGG + contig261end:14257-14276 None:intergenic 45.0%
!! GAGGAAATTTGGTGTTCACG+GGG - contig261end:12271-12290 MsG0080048280.01.T01:intron 45.0%
!! GCGGGTATTGAATTCGTATG+AGG + contig261end:17017-17036 None:intergenic 45.0%
!! GGACTTCATGTTGGTTTCTC+AGG + contig261end:16363-16382 None:intergenic 45.0%
!! GGAGGAAATTTGGTGTTCAC+GGG - contig261end:12270-12289 MsG0080048280.01.T01:intron 45.0%
!! TTCGGTGTTTGATGTACCCT+AGG - contig261end:16651-16670 MsG0080048280.01.T01:intron 45.0%
!!! ATTACTTTTTTAATTTTAAA+TGG - contig261end:18795-18814 MsG0080048280.01.T01:five_prime_UTR 5.0%
AAGACATGAGAAGCGGGTGA+TGG - contig261end:17897-17916 MsG0080048280.01.T01:intron 50.0%
AAGCGTTCGAGACCAGCTAA+TGG - contig261end:15945-15964 MsG0080048280.01.T01:intron 50.0%
AAGGCCAAATGCACCTATGG+CGG - contig261end:18554-18573 MsG0080048280.01.T01:five_prime_UTR 50.0%
ACACTAACACTTCCACCTGC+CGG - contig261end:16898-16917 MsG0080048280.01.T01:intron 50.0%
ACGCCATCTAAGCAGTGATG+AGG + contig261end:18686-18705 None:intergenic 50.0%
AGAATGGCGAAGAAAGGAGG+AGG - contig261end:10601-10620 MsG0080048280.01.T01:CDS 50.0%
AGCGTTCGAGACCAGCTAAT+GGG - contig261end:15946-15965 MsG0080048280.01.T01:intron 50.0%
AGCTCGCCTTGAAGAGATCA+AGG - contig261end:13987-14006 MsG0080048280.01.T01:intron 50.0%
AGTGGTCAGCCTCAGTTTCT+AGG + contig261end:17669-17688 None:intergenic 50.0%
ATCCACGCTAAGTGTGTAGG+CGG + contig261end:17036-17055 None:intergenic 50.0%
ATTGCCGGAAAATGGTTCCG+GGG - contig261end:13431-13450 MsG0080048280.01.T01:intron 50.0%
ATTGGTTGGACACCCTCGTA+TGG + contig261end:16962-16981 None:intergenic 50.0%
CAACGTAGTGAAGAGCAGTG+GGG - contig261end:17181-17200 MsG0080048280.01.T01:five_prime_UTR 50.0%
CACAGTCTCCTCTGGCAAAA+AGG + contig261end:18198-18217 None:intergenic 50.0%
CAGAAGGCCAAATGCACCTA+TGG - contig261end:18551-18570 MsG0080048280.01.T01:five_prime_UTR 50.0%
CAGGGGAATGCAACGTAAGA+CGG + contig261end:10486-10505 None:intergenic 50.0%
CAGTCTCCTCTGGCAAAAAG+GGG + contig261end:18196-18215 None:intergenic 50.0%
CGCTAACCCAGTGCTTTGAT+TGG + contig261end:14265-14284 None:intergenic 50.0%
CGTTAAGAATCGCAAGGGAC+AGG - contig261end:18519-18538 MsG0080048280.01.T01:five_prime_UTR 50.0%
CTAACAGTGACCAGGTCATG+CGG + contig261end:14300-14319 None:intergenic 50.0%
CTGATACCACTGTGGGACTT+CGG - contig261end:17094-17113 MsG0080048280.01.T01:intron 50.0%
CTTACAAGCCGACGTGGTAA+GGG - contig261end:17309-17328 MsG0080048280.01.T01:intron 50.0%
GAGACGCTATTCGTGAACGA+CGG - contig261end:17872-17891 MsG0080048280.01.T01:intron 50.0%
GCATAAACGAGAACAGCCTC+TGG - contig261end:15569-15588 MsG0080048280.01.T01:intron 50.0%
GCCAAGATAGTCACGATGCT+AGG - contig261end:12776-12795 MsG0080048280.01.T01:intron 50.0%
GCTACAGACTTCACTGCTCT+TGG + contig261end:10398-10417 None:intergenic 50.0%
GGGAGCCTTAAACACTTGTG+TGG - contig261end:17117-17136 MsG0080048280.01.T01:intron 50.0%
GTTGATGCCAACGGTACCAT+TGG + contig261end:17154-17173 None:intergenic 50.0%
TAACTAGGTTGCTGTGTGCG+AGG + contig261end:10420-10439 None:intergenic 50.0%
TAAGGGTAGCAATGTGGGGA+TGG + contig261end:17066-17085 None:intergenic 50.0%
TCACATTGGCGTGCAGAGTT+CGG - contig261end:15833-15852 MsG0080048280.01.T01:intron 50.0%
TCTTGGTCCAATGGTACCGT+TGG - contig261end:17144-17163 MsG0080048280.01.T01:intron 50.0%
TGACCCGAACCAGTTTCTCT+CGG + contig261end:10371-10390 None:intergenic 50.0%
TGATACCACTGTGGGACTTC+GGG - contig261end:17095-17114 MsG0080048280.01.T01:intron 50.0%
TGGATGCACGTCTACCTTGA+GGG - contig261end:12914-12933 MsG0080048280.01.T01:intron 50.0%
TGGGACGGGTCTTCTTCTTT+CGG - contig261end:16285-16304 MsG0080048280.01.T01:intron 50.0%
TGTGGAAACCGACCATGCTT+AGG + contig261end:11858-11877 None:intergenic 50.0%
TTACTGGAGACAAGACCAGC+TGG + contig261end:16103-16122 None:intergenic 50.0%
TTGGTTGGACACCCTCGTAT+GGG + contig261end:16961-16980 None:intergenic 50.0%
! ACCTGACATAACTGCCGGTT+CGG + contig261end:14783-14802 None:intergenic 50.0%
! CTTTTTGCCAGAGGAGACTG+TGG - contig261end:18196-18215 MsG0080048280.01.T01:intron 50.0%
! GCGCCTGATCCAATTTTGTC+AGG + contig261end:12952-12971 None:intergenic 50.0%
! GGACAGGTCAGAGTATCAGA+AGG - contig261end:18535-18554 MsG0080048280.01.T01:five_prime_UTR 50.0%
! GGCAAGGAGAAGGGCTTTAT+TGG - contig261end:11096-11115 MsG0080048280.01.T01:intron 50.0%
! GGCGCCCTTTATTGCTGTTA+TGG - contig261end:12967-12986 MsG0080048280.01.T01:intron 50.0%
! TACCCGAGAGAAACTGGTTC+GGG - contig261end:10365-10384 MsG0080048280.01.T01:three_prime_UTR 50.0%
! TCAGTAGCAACCTGGGTTGA+CGG - contig261end:14678-14697 MsG0080048280.01.T01:intron 50.0%
! TGGTGCTGGAGTTACGATTG+AGG - contig261end:17921-17940 MsG0080048280.01.T01:intron 50.0%
!! ACATAACTGCCGGTTCGGTA+CGG + contig261end:14778-14797 None:intergenic 50.0%
!! ATGATCGACTTGCTGCCCTT+CGG + contig261end:13956-13975 None:intergenic 50.0%
!! GCTTTGATTGGGTTGAAGGC+CGG + contig261end:14253-14272 None:intergenic 50.0%
!! GTTGGAAGAAAGCACCGACA+TGG - contig261end:11517-11536 MsG0080048280.01.T01:intron 50.0%
AATCGGGGGTGGAAGAATGC+AGG + contig261end:14587-14606 None:intergenic 55.0%
ACCGAACCGGCAGTTATGTC+AGG - contig261end:14779-14798 MsG0080048280.01.T01:intron 55.0%
ACTCACCTTACAAGCCGACG+TGG - contig261end:17303-17322 MsG0080048280.01.T01:intron 55.0%
AGCTGCAAAACGCGCTGCAA+AGG - contig261end:18058-18077 MsG0080048280.01.T01:intron 55.0%
AGGCCAAATGCACCTATGGC+GGG - contig261end:18555-18574 MsG0080048280.01.T01:five_prime_UTR 55.0%
ATACCACTGTGGGACTTCGG+GGG - contig261end:17097-17116 MsG0080048280.01.T01:intron 55.0%
ATCCGATGACCGTACCGAAC+CGG - contig261end:14766-14785 MsG0080048280.01.T01:intron 55.0%
CCAGGACCTGACATAACTGC+CGG + contig261end:14788-14807 None:intergenic 55.0%
CCTTACAAGCCGACGTGGTA+AGG - contig261end:17308-17327 MsG0080048280.01.T01:intron 55.0%
CTCGTCGTCCATGTCTTCAG+TGG + contig261end:10692-10711 None:intergenic 55.0%
GACCCGAACCAGTTTCTCTC+GGG + contig261end:10370-10389 None:intergenic 55.0%
GATACCACTGTGGGACTTCG+GGG - contig261end:17096-17115 MsG0080048280.01.T01:intron 55.0%
GCCCTTCGGACTTGAGTAGA+AGG + contig261end:13942-13961 None:intergenic 55.0%
GCGATAGAATCGGCTGGCAT+TGG + contig261end:15551-15570 None:intergenic 55.0%
GGATTCAACACCTGCCCTCA+AGG + contig261end:12931-12950 None:intergenic 55.0%
GGGAATGCAACGTAAGACGG+CGG + contig261end:10483-10502 None:intergenic 55.0%
GTGGATGCACGTCTACCTTG+AGG - contig261end:12913-12932 MsG0080048280.01.T01:intron 55.0%
TCACAGGGTCCCCAATGTCT+CGG + contig261end:13613-13632 None:intergenic 55.0%
TCCACGCTAAGTGTGTAGGC+GGG + contig261end:17035-17054 None:intergenic 55.0%
TCGTTGTTGAGCTAGGTGCG+AGG - contig261end:17229-17248 MsG0080048280.01.T01:intron 55.0%
TTCCCCGCCATAGGTGCATT+TGG + contig261end:18561-18580 None:intergenic 55.0%
TTGCCAGAGGAGACTGTGGA+CGG - contig261end:18200-18219 MsG0080048280.01.T01:intron 55.0%
TTGTTGAGCTAGGTGCGAGG+AGG - contig261end:17232-17251 MsG0080048280.01.T01:intron 55.0%
TTTCCGTCCACAGTCTCCTC+TGG + contig261end:18206-18225 None:intergenic 55.0%
! AAGTGATGACGAGGCCCCAA+AGG - contig261end:11692-11711 MsG0080048280.01.T01:intron 55.0%
! AGCTGTCCCCTTTTTGCCAG+AGG - contig261end:18187-18206 MsG0080048280.01.T01:intron 55.0%
! GGAGGAAGACGATGATGACG+AGG - contig261end:11059-11078 MsG0080048280.01.T01:intron 55.0%
! GTGGTTGTTAATGGGCCAGC+TGG - contig261end:16085-16104 MsG0080048280.01.T01:intron 55.0%
!! CCTTACCACGTCGGCTTGTA+AGG + contig261end:17311-17330 None:intergenic 55.0%
!! CGCAGTTGGGAGGGGTATTA+GGG + contig261end:10460-10479 None:intergenic 55.0%
ACCCGCCTACACACTTAGCG+TGG - contig261end:17031-17050 MsG0080048280.01.T01:intron 60.0%
CCGGAAAATGGTTCCGGGGT+CGG - contig261end:13435-13454 MsG0080048280.01.T01:intron 60.0%
CCGGCAGTTATGTCAGGTCC+TGG - contig261end:14785-14804 MsG0080048280.01.T01:intron 60.0%
CGTAGTGAAGAGCAGTGGGG+CGG - contig261end:17184-17203 MsG0080048280.01.T01:five_prime_UTR 60.0%
GAAAATGGTTCCGGGGTCGG+TGG - contig261end:13438-13457 MsG0080048280.01.T01:intron 60.0%
GAGACATTGGGGACCCTGTG+AGG - contig261end:13612-13631 MsG0080048280.01.T01:five_prime_UTR 60.0%
GGCCAAATGCACCTATGGCG+GGG - contig261end:18556-18575 MsG0080048280.01.T01:five_prime_UTR 60.0%
GTAGTGAAGAGCAGTGGGGC+GGG - contig261end:17185-17204 MsG0080048280.01.T01:five_prime_UTR 60.0%
TGACGAGGCCCCAAAGGAAG+AGG - contig261end:11698-11717 MsG0080048280.01.T01:intron 60.0%
TGCACGTCTACCTTGAGGGC+AGG - contig261end:12918-12937 MsG0080048280.01.T01:intron 60.0%
TGGTGCTCAGCAGAGACCAG+AGG + contig261end:15588-15607 None:intergenic 60.0%
! ACCTATGGCGGGGAATCCAC+TGG - contig261end:18566-18585 MsG0080048280.01.T01:five_prime_UTR 60.0%
! ATTCTAGAGGCCACCGACCC+CGG + contig261end:13451-13470 None:intergenic 60.0%
! CATGAGAAGCGGGTGATGGC+TGG - contig261end:17901-17920 MsG0080048280.01.T01:intron 60.0%
! CCGACCCCGGAACCATTTTC+CGG + contig261end:13438-13457 None:intergenic 60.0%
! TCCAGTGGATTCCCCGCCAT+AGG + contig261end:18570-18589 None:intergenic 60.0%
!! AAGCACTGGGTTAGCGGCTG+CGG - contig261end:14269-14288 MsG0080048280.01.T01:intron 60.0%
!! GATTGGGTTGAAGGCCGGTC+TGG + contig261end:14248-14267 None:intergenic 60.0%
!! GCGCAGTTGGGAGGGGTATT+AGG + contig261end:10461-10480 None:intergenic 60.0%
!! TGCCGGTTCGGTACGGTCAT+CGG + contig261end:14771-14790 None:intergenic 60.0%
ACGTAAGACGGCGGCGCAGT+TGG + contig261end:10474-10493 None:intergenic 65.0%
CACTGATGAGGACGGCGACG+AGG - contig261end:11038-11057 MsG0080048280.01.T01:intron 65.0%
CGTAAGACGGCGGCGCAGTT+GGG + contig261end:10473-10492 None:intergenic 65.0%
TGATGAGGACGGCGACGAGG+AGG - contig261end:11041-11060 MsG0080048280.01.T01:intron 65.0%
TGCGGTCACACCGCATGACC+TGG - contig261end:14287-14306 MsG0080048280.01.T01:intron 65.0%
! AAGCGGGTGATGGCTGGTGC+TGG - contig261end:17907-17926 MsG0080048280.01.T01:intron 65.0%
AAGACGGCGGCGCAGTTGGG+AGG + contig261end:10470-10489 None:intergenic 70.0%
AAGAGCAGTGGGGCGGGAGG+AGG - contig261end:17191-17210 MsG0080048280.01.T01:five_prime_UTR 70.0%
AGACGGCGGCGCAGTTGGGA+GGG + contig261end:10469-10488 None:intergenic 70.0%
AGAGCAGTGGGGCGGGAGGA+GGG - contig261end:17192-17211 MsG0080048280.01.T01:five_prime_UTR 70.0%
GCTCCCCCGAAGTCCCACAG+TGG + contig261end:17103-17122 None:intergenic 70.0%
GTGAAGAGCAGTGGGGCGGG+AGG - contig261end:17188-17207 MsG0080048280.01.T01:five_prime_UTR 70.0%
GACGGCGGCGCAGTTGGGAG+GGG + contig261end:10468-10487 None:intergenic 75.0%
! GCAGTGGGGCGGGAGGAGGG+AGG - contig261end:17195-17214 MsG0080048280.01.T01:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
contig261end gene 10364 18827 10364 ID=MsG0080048280.01;Name=MsG0080048280.01
contig261end mRNA 10364 18827 10364 ID=MsG0080048280.01.T01;Parent=MsG0080048280.01;Name=MsG0080048280.01.T01;_AED=0.36;_eAED=0.36;_QI=1368|0.86|0.87|1|0.6|0.62|16|52|327
contig261end exon 17630 17769 17630 ID=MsG0080048280.01.T01:exon:9175;Parent=MsG0080048280.01.T01
contig261end exon 17160 17239 17160 ID=MsG0080048280.01.T01:exon:9177;Parent=MsG0080048280.01.T01
contig261end exon 15982 16069 15982 ID=MsG0080048280.01.T01:exon:9178;Parent=MsG0080048280.01.T01
contig261end exon 15168 15347 15168 ID=MsG0080048280.01.T01:exon:9179;Parent=MsG0080048280.01.T01
contig261end exon 13572 13742 13572 ID=MsG0080048280.01.T01:exon:9180;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 18470 18827 18470 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 18283 18374 18283 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 18068 18170 18068 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 17630 17769 17630 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 17370 17507 17370 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 17160 17239 17160 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 15982 16069 15982 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 15168 15347 15168 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 13572 13742 13572 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end five_prime_UTR 13520 13537 13520 ID=MsG0080048280.01.T01:five_prime_utr;Parent=MsG0080048280.01.T01
contig261end CDS 13460 13519 13460 ID=MsG0080048280.01.T01:cds;Parent=MsG0080048280.01.T01
contig261end CDS 13224 13363 13224 ID=MsG0080048280.01.T01:cds;Parent=MsG0080048280.01.T01
contig261end CDS 13029 13140 13029 ID=MsG0080048280.01.T01:cds;Parent=MsG0080048280.01.T01
contig261end CDS 11109 11350 11109 ID=MsG0080048280.01.T01:cds;Parent=MsG0080048280.01.T01
contig261end CDS 10947 11010 10947 ID=MsG0080048280.01.T01:cds;Parent=MsG0080048280.01.T01
contig261end CDS 10769 10860 10769 ID=MsG0080048280.01.T01:cds;Parent=MsG0080048280.01.T01
contig261end CDS 10416 10689 10416 ID=MsG0080048280.01.T01:cds;Parent=MsG0080048280.01.T01
contig261end three_prime_UTR 10364 10415 10364 ID=MsG0080048280.01.T01:three_prime_utr;Parent=MsG0080048280.01.T01
contig261end mRNA 15153 18827 15153 ID=MsG0080048280.01.T02;Parent=MsG0080048280.01;Name=MsG0080048280.01.T02;_AED=0.42;_eAED=0.51;_QI=240|0.57|0.5|1|0.71|0.62|8|0|378
contig261end exon 17630 17874 17630 ID=MsG0080048280.01.T02:exon:9188;Parent=MsG0080048280.01.T02
contig261end exon 17148 17239 17148 ID=MsG0080048280.01.T02:exon:9189;Parent=MsG0080048280.01.T02
contig261end exon 15550 15605 15550 ID=MsG0080048280.01.T02:exon:9190;Parent=MsG0080048280.01.T02
contig261end exon 15153 15445 15153 ID=MsG0080048280.01.T02:exon:9191;Parent=MsG0080048280.01.T02
contig261end five_prime_UTR 18588 18827 18588 ID=MsG0080048280.01.T02:five_prime_utr;Parent=MsG0080048280.01.T02
contig261end CDS 18470 18587 18470 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end CDS 18283 18374 18283 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end CDS 18068 18170 18068 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end CDS 17630 17874 17630 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end CDS 17370 17507 17370 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end CDS 17148 17239 17148 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end CDS 15550 15605 15550 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end CDS 15153 15445 15153 ID=MsG0080048280.01.T02:cds;Parent=MsG0080048280.01.T02
contig261end mRNA 10364 13747 10364 ID=MsG0080048280.01.T03;Parent=MsG0080048280.01;Name=MsG0080048280.01.T03;_AED=0.43;_eAED=0.44;_QI=194|0.71|0.75|1|0.71|0.75|8|52|327
contig261end exon 13572 13747 13572 ID=MsG0080048280.01.T03:exon:9192;Parent=MsG0080048280.01.T03
contig261end five_prime_UTR 13572 13747 13572 ID=MsG0080048280.01.T03:five_prime_utr;Parent=MsG0080048280.01.T03
contig261end five_prime_UTR 13520 13537 13520 ID=MsG0080048280.01.T03:five_prime_utr;Parent=MsG0080048280.01.T03
contig261end CDS 13460 13519 13460 ID=MsG0080048280.01.T03:cds;Parent=MsG0080048280.01.T03
contig261end CDS 13224 13363 13224 ID=MsG0080048280.01.T03:cds;Parent=MsG0080048280.01.T03
contig261end CDS 13029 13140 13029 ID=MsG0080048280.01.T03:cds;Parent=MsG0080048280.01.T03
contig261end CDS 11109 11350 11109 ID=MsG0080048280.01.T03:cds;Parent=MsG0080048280.01.T03
contig261end CDS 10947 11010 10947 ID=MsG0080048280.01.T03:cds;Parent=MsG0080048280.01.T03
contig261end CDS 10769 10860 10769 ID=MsG0080048280.01.T03:cds;Parent=MsG0080048280.01.T03
contig261end CDS 10416 10689 10416 ID=MsG0080048280.01.T03:cds;Parent=MsG0080048280.01.T03
contig261end three_prime_UTR 10364 10415 10364 ID=MsG0080048280.01.T03:three_prime_utr;Parent=MsG0080048280.01.T03
Gene Sequence

>MsG0080048280.01.T03

ATGAAAAAATCAGATTCCTTAAAGGATGGTGCAAAAAAAGGAAGAAAAGCAAAAGATCAGAAGGATCACATTGGCGTGCAGAGTTCGGAAATGTTAAAAGTTAGAGCTTCCCTTGAGGAAAAATTGAAACAAAAGGGTTTGTATAGTCAAATTGCTCCAAAGCCTAGTAATTCTCAAAAGCGTTCGAGACCAGCTAATGGCCAGCTTGCAACATATGATGATTTTGATGATGCTGTGGTTGTTAATGGGCCAGCTGGTCTTGTCTCCAGTAAAGTTTCACCGTTTGCTAATGCTAATCTGAAGAAACTCAAGGTGGCTTCTGGTGATGATGATTTGCCTAAGAGAGACGCTATTCGTGAACGACGGAAAAGACATGAGAAGCGGGTGATGGCTGGTGCTGGAGTTACGATTGAGGATGATAATGATGATGGTGATGATCAAATGGATGACCTTGTACCTCATGATGAAGAGGACATTGAAAGTGGGGGTGACTCAGAAAATGAATTTTACAAACAAGTTGAAAAAGGCAAGCTGCAAAACGCGCTGCAAAGGCTGAAATCAGCTGTCCCCTTTTTGCCAGAGGAGACTGTGGACGGAAAGCGCTATATCACTTCTCAGATGTCGAAGAACAGAGGACTAACTCGTAGTCGCAACAAGGATAAGAAGAATCCTAGAAAGAACTACAAGGTACTTTCACTTACTCTTGAATGCTCAAGCATCAAAAAGCCGTTAAGAATCGCAAGGGACAGGTCAGAGTATCAGAAGGCCAAATGCACCTATGGCGGGGAATCCACTGGAATTAATGCAACTATCCGTCGAAGTATCAGATCAGGAGTTGATATTGTTAAAACGCCTACATTACAATATGTTCTATTAATCCACCATTTTGAACCTCATCACTGCTTAGATGGCGTAACTTGTATAATTATTGATTGGAAACTTAACATCTTTGGCATATTAAATGGTGGCAAGTTGTCAATTTGA

>MsG0080048280.01.T02

ATGGCGAAGAAAGGAGGAGGAAGCAAAAGTTATCAGAAGAAGAAAGACGCTACAACAACTTCCCGACGCGACCGTTATAACTTTTCCACTGAAGACATGGACGACGAGATTGATATCTTTCATAAGCAGAGGGATATTGTTCCACTTGACATTAATGCTGATTCTGCTGAATCAGATGAAGATGATGAAATGCCTGTTTTCAATGATAAGGATATTGATAATGATGACACTGATGAGGACGGCGACGAGGAGGAAGACGATGATGACGAGGATGATGAATATGATGGCAAGGAGAAGGGCTTTATTGGACAAAGGAAACAATTCTTGATTAATTTCCTTTGTTACTTTTGGAAGTTTTTAAAGTCGAATTTATTCAAAAGGTGTGATTCTGATAAATATACATGTTTGGTTTGTTTAGTAATTAGGCAACAGAAATATTTGAAGTCGTTGCATGGTGGAGATGAAGACGGAATGCAAGATGAAGAAGACGATGAAGGTATTAAGAAAACTATCGTTGGAAGAAAGCACCGACATGGTGCTGATAATCGTAATTTTGAGCTACAATCAAGTGATGACGAGGCCCCAAAGGAAGAGGAAGAAATTGCAATAAAAGAACAAAGGGAGAAAGCAAAACAATATACAGAGGAAGATTTTGACCTTGTGGAAGACGAAGATAATGAGAAATTAACTTTTAAGGATGCATCGGATAATGTAACTTTCAATGTCGAGGATCTGAGTGCTTTGTCAAAGGAGGAGCAAATGAACGTTCTGTATAGGTTAGAATATTCGTACTTTTCGTTTTATTCTGTTTACCGAGACATTGGGGACCCTGTGAGGAATTATAACAATAGTTTTCTTTTTCATTGTACTTATTTATGTTGTTCTACTTGGGATGTGAATGAAGTCCATATTGTGTTACAATTTATTTCATCTCTTGTGAAGGTTAAAAAGGGGGAAATAGTTATGGAAGGAGGAGTGCATTATTTTGAGTTGAAGCAGCTTATTTTGCTGTCCTATTGCCAAGCTATAACCTTCTACCTTCTACTCAAGTCCGAAGGGCAGCAAGTCGATCATCATCCTGTAATAGCTCGCCTTGAAGAGATCAAGGAATTAATGAATCAGGTATTTTCTTTTTAA

>MsG0080048280.01.T01

ATGAAAAAATCAGATTCCTTAAAGGATGGTGCAAAAAAAGGAAGAAAAGCAAAAGATCAGAAGGATCACATTGGCGTGCAGAGTTCGGAAATGTTAAAAGTTAGAGCTTCCCTTGAGGAAAAATTGAAACAAAAGGGTTTGTATAGTCAAATTGCTCCAAAGCCTAGTAATTCTCAAAAGCGTTCGAGACCAGCTAATGGCCAGCTTGCAACATATGATGATTTTGATGATGCTGTGGTTGTTAATGGGCCAGCTGGTCTTGTCTCCAGTAAAGTTTCACCGTTTGCTAATGCTAATCTGAAGAAACTCAAGGTGGCTTCTGGTGATGATGATTTGCCTAAGAGAGACGCTATTCGTGAACGACGGAAAAGACATGAGAAGCGGGTGATGGCTGGTGCTGGAGTTACGATTGAGGATGATAATGATGATGGTGATGATCAAATGGATGACCTTGTACCTCATGATGAAGAGGACATTGAAAGTGGGGGTGACTCAGAAAATGAATTTTACAAACAAGTTGAAAAAGGCAAGCTGCAAAACGCGCTGCAAAGGCTGAAATCAGCTGTCCCCTTTTTGCCAGAGGAGACTGTGGACGGAAAGCGCTATATCACTTCTCAGATGTCGAAGAACAGAGGACTAACTCGTAGTCGCAACAAGGATAAGAAGAATCCTAGAAAGAACTACAAGGTACTTTCACTTACTCTTGAATGCTCAAGCATCAAAAAGCCGTTAAGAATCGCAAGGGACAGGTCAGAGTATCAGAAGGCCAAATGCACCTATGGCGGGGAATCCACTGGAATTAATGCAACTATCCGTCGAAGTATCAGATCAGGAGTTGATATTGTTAAAACGCCTACATTACAATATGTTCTATTAATCCACCATTTTGAACCTCATCACTGCTTAGATGGCGTAACTTGTATAATTATTGATTGGAAACTTAACATCTTTGGCATATTAAATGGTGGCAAGTTGTCAATTTGA
Protein sequence

>MsG0080048280.01.T03

MKKSDSLKDGAKKGRKAKDQKDHIGVQSSEMLKVRASLEEKLKQKGLYSQIAPKPSNSQKRSRPANGQLATYDDFDDAVVVNGPAGLVSSKVSPFANANLKKLKVASGDDDLPKRDAIRERRKRHEKRVMAGAGVTIEDDNDDGDDQMDDLVPHDEEDIESGGDSENEFYKQVEKGKLQNALQRLKSAVPFLPEETVDGKRYITSQMSKNRGLTRSRNKDKKNPRKNYKVLSLTLECSSIKKPLRIARDRSEYQKAKCTYGGESTGINATIRRSIRSGVDIVKTPTLQYVLLIHHFEPHHCLDGVTCIIIDWKLNIFGILNGGKLSI*

>MsG0080048280.01.T02

MAKKGGGSKSYQKKKDATTTSRRDRYNFSTEDMDDEIDIFHKQRDIVPLDINADSAESDEDDEMPVFNDKDIDNDDTDEDGDEEEDDDDEDDEYDGKEKGFIGQRKQFLINFLCYFWKFLKSNLFKRCDSDKYTCLVCLVIRQQKYLKSLHGGDEDGMQDEEDDEGIKKTIVGRKHRHGADNRNFELQSSDDEAPKEEEEIAIKEQREKAKQYTEEDFDLVEDEDNEKLTFKDASDNVTFNVEDLSALSKEEQMNVLYRLEYSYFSFYSVYRDIGDPVRNYNNSFLFHCTYLCCSTWDVNEVHIVLQFISSLVKVKKGEIVMEGGVHYFELKQLILLSYCQAITFYLLLKSEGQQVDHHPVIARLEEIKELMNQVFSF*

>MsG0080048280.01.T01

MKKSDSLKDGAKKGRKAKDQKDHIGVQSSEMLKVRASLEEKLKQKGLYSQIAPKPSNSQKRSRPANGQLATYDDFDDAVVVNGPAGLVSSKVSPFANANLKKLKVASGDDDLPKRDAIRERRKRHEKRVMAGAGVTIEDDNDDGDDQMDDLVPHDEEDIESGGDSENEFYKQVEKGKLQNALQRLKSAVPFLPEETVDGKRYITSQMSKNRGLTRSRNKDKKNPRKNYKVLSLTLECSSIKKPLRIARDRSEYQKAKCTYGGESTGINATIRRSIRSGVDIVKTPTLQYVLLIHHFEPHHCLDGVTCIIIDWKLNIFGILNGGKLSI*