AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048284.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048284.01.T01 MTR_4g057270 88.189 254 28 1 65 318 84 335 4.64e-146 414
MsG0080048284.01.T01 MTR_2g084280 68.444 225 64 2 92 316 96 313 1.27e-99 296
MsG0080048284.01.T01 MTR_8g064700 29.897 194 109 5 123 302 235 415 3.27e-19 87.8
MsG0080048284.01.T01 MTR_3g030700 34.118 170 100 5 121 285 185 347 3.41e-18 84.7
MsG0080048284.01.T01 MTR_3g104100 33.333 165 93 6 131 285 194 351 3.75e-17 81.6
MsG0080048284.01.T01 MTR_2g038040 31.707 164 95 4 131 280 51 211 5.29e-17 79.3
MsG0080048284.01.T01 MTR_8g067280 29.885 174 108 5 125 285 452 624 6.50e-16 78.6
MsG0080048284.01.T01 MTR_1g112680 53.226 62 29 0 127 188 312 373 1.47e-15 77.4
MsG0080048284.01.T01 MTR_2g081040 32.727 165 94 6 131 285 176 333 3.12e-15 75.9
MsG0080048284.01.T01 MTR_3g498695 37.864 103 58 1 96 198 268 364 9.09e-15 75.1
MsG0080048284.01.T01 MTR_3g498695 37.864 103 58 1 96 198 268 364 9.33e-15 75.1
MsG0080048284.01.T01 MTR_4g091910 32.278 158 90 5 131 283 46 191 9.85e-15 72.4
MsG0080048284.01.T01 MTR_5g030430 31.333 150 92 4 136 275 497 645 1.87e-14 74.3
MsG0080048284.01.T01 MTR_8g027495 24.422 303 181 14 8 288 328 604 1.93e-14 74.3
MsG0080048284.01.T01 MTR_7g083900 53.448 58 27 0 131 188 285 342 4.20e-13 70.1
MsG0080048284.01.T01 MTR_7g083900 53.448 58 27 0 131 188 285 342 4.29e-13 70.1
MsG0080048284.01.T01 MTR_8g024790 28.155 206 108 8 94 275 244 433 1.11e-12 68.6
MsG0080048284.01.T01 MTR_7g117670 51.923 52 25 0 136 187 406 457 1.68e-12 68.2
MsG0080048284.01.T01 MTR_4g097950 28.571 133 89 2 134 260 72 204 7.49e-12 64.7
MsG0080048284.01.T01 MTR_4g092700 30.469 128 80 3 60 187 95 213 2.83e-11 63.9
MsG0080048284.01.T01 MTR_8g024770 36.458 96 52 2 99 185 237 332 4.15e-11 63.9
MsG0080048284.01.T01 MTR_7g096350 43.939 66 34 1 125 187 345 410 5.81e-11 63.5
MsG0080048284.01.T01 MTR_2g010450 26.573 143 101 3 120 260 165 305 6.91e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048284.01.T01 AT2G28160 58.442 231 82 4 90 316 97 317 2.31e-80 247
MsG0080048284.01.T01 AT2G28160 57.333 225 82 4 90 310 97 311 6.21e-76 235
MsG0080048284.01.T01 AT5G57150 39.490 157 85 4 131 279 54 208 1.89e-24 99.4
MsG0080048284.01.T01 AT5G57150 39.490 157 85 4 131 279 54 208 2.06e-24 99.4
MsG0080048284.01.T01 AT5G57150 39.490 157 85 4 131 279 53 207 2.31e-24 99.0
MsG0080048284.01.T01 AT5G57150 39.490 157 85 4 131 279 53 207 3.08e-24 99.4
MsG0080048284.01.T01 AT5G57150 39.490 157 85 4 131 279 54 208 6.98e-24 98.6
MsG0080048284.01.T01 AT4G29930 35.714 154 86 4 122 274 48 189 2.42e-21 90.9
MsG0080048284.01.T01 AT2G16910 35.260 173 86 4 130 277 312 483 3.81e-21 94.4
MsG0080048284.01.T01 AT4G29930 34.756 164 93 4 122 285 48 197 6.33e-21 90.1
MsG0080048284.01.T01 AT4G29930 35.294 153 85 4 122 274 48 186 2.06e-20 88.6
MsG0080048284.01.T01 AT4G29930 34.031 191 87 6 122 285 48 226 1.19e-19 87.0
MsG0080048284.01.T01 AT4G29930 34.031 191 87 6 122 285 48 226 1.19e-19 87.0
MsG0080048284.01.T01 AT4G29930 34.444 180 79 6 122 274 48 215 3.01e-19 85.9
MsG0080048284.01.T01 AT4G29930 42.202 109 45 3 131 228 53 154 1.78e-17 79.3
MsG0080048284.01.T01 AT1G10610 34.167 120 76 2 126 242 161 280 1.35e-15 77.0
MsG0080048284.01.T01 AT1G10610 34.167 120 76 2 126 242 228 347 1.78e-15 77.0
MsG0080048284.01.T01 AT1G10610 34.167 120 76 2 126 242 258 377 2.17e-15 77.0
MsG0080048284.01.T01 AT2G46510 38.462 104 59 2 125 225 385 486 5.11e-15 75.9
MsG0080048284.01.T01 AT1G01260 32.500 160 81 4 125 281 423 558 2.50e-14 73.9
MsG0080048284.01.T01 AT1G01260 32.500 160 81 4 125 281 423 558 2.50e-14 73.9
MsG0080048284.01.T01 AT1G01260 32.500 160 81 4 125 281 423 558 2.50e-14 73.9
MsG0080048284.01.T01 AT4G17880 29.870 154 103 3 125 275 406 557 2.59e-14 73.9
MsG0080048284.01.T01 AT5G46760 29.861 144 95 4 136 275 419 560 7.05e-14 72.8
MsG0080048284.01.T01 AT1G12860 40.964 83 46 1 131 213 266 345 2.84e-13 70.5
MsG0080048284.01.T01 AT1G12860 40.964 83 46 1 131 213 266 345 3.34e-13 70.5
MsG0080048284.01.T01 AT3G26744 51.724 58 28 0 131 188 306 363 5.45e-13 69.7
MsG0080048284.01.T01 AT3G26744 51.724 58 28 0 131 188 306 363 5.45e-13 69.7
MsG0080048284.01.T01 AT3G26744 51.724 58 28 0 131 188 306 363 5.45e-13 69.7
MsG0080048284.01.T01 AT3G26744 51.724 58 28 0 131 188 306 363 5.59e-13 69.7
MsG0080048284.01.T01 AT4G21330 27.545 167 118 2 123 287 23 188 6.41e-13 67.0
MsG0080048284.01.T01 AT1G32640 29.167 168 104 6 119 275 431 594 1.48e-12 68.6

Find 76 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTATCTTTATCTATTAA+TGG 0.150241 contig265end:-10837 MsG0080048284.01.T01:three_prime_UTR
CAATGTTCAGAATTCAAATT+TGG 0.160318 contig265end:-11683 MsG0080048284.01.T01:CDS
AAATTTGGCAGGTTGATTTC+TGG 0.184628 contig265end:+11324 None:intergenic
TAATGTTGTAATTCTAATTA+AGG 0.189726 contig265end:-11214 MsG0080048284.01.T01:three_prime_UTR
AACCTCAGCCTTAAGCTTCT+TGG 0.225200 contig265end:+12037 None:intergenic
AATTGATCCTTGATGAGTTT+TGG 0.235753 contig265end:+11986 None:intergenic
ATCACCCATAGCTTTAAATT+TGG 0.237169 contig265end:+11309 None:intergenic
CTATTAATGGATCATTTATA+AGG 0.255866 contig265end:-10824 MsG0080048284.01.T01:three_prime_UTR
CCAATTTGAGCCATTATTAT+CGG 0.272885 contig265end:-10949 MsG0080048284.01.T01:three_prime_UTR
GAAGTGTACCTTAGTTATAT+TGG 0.288057 contig265end:+12532 None:intergenic
GCTTTACGCATTGCGTTCTT+TGG 0.305835 contig265end:-12558 MsG0080048284.01.T01:CDS
AAGCTTAAGGCTGAGGTTGC+AGG 0.310327 contig265end:-12032 MsG0080048284.01.T01:CDS
TATCAATAGAGTTACATATA+GGG 0.328796 contig265end:+10858 None:intergenic
GTTAAAATAGTATGCAATAA+AGG 0.353055 contig265end:-11757 MsG0080048284.01.T01:CDS
CCGATAATAATGGCTCAAAT+TGG 0.357645 contig265end:+10949 None:intergenic
AAGTGTACCTTAGTTATATT+GGG 0.358633 contig265end:+12533 None:intergenic
TCCTCAGATTATGCGTGTTT+CGG 0.368953 contig265end:+11034 None:intergenic
AACATGTCAGATGTGGCTTT+TGG 0.376410 contig265end:-17333 MsG0080048284.01.T01:CDS
TTGCTATTGGCCGATAATAA+TGG 0.386062 contig265end:+10939 None:intergenic
ATTATATTTATAGATGGATA+AGG 0.392223 contig265end:-12111 MsG0080048284.01.T01:intron
ATGCTTGTTGTAGTTGTTGC+AGG 0.393956 contig265end:+12683 None:intergenic
TTATCAATAGAGTTACATAT+AGG 0.394645 contig265end:+10857 None:intergenic
ACCTGCCAAATTTAAAGCTA+TGG 0.396521 contig265end:-11314 MsG0080048284.01.T01:CDS
AAATGATATATCCGAGACTT+TGG 0.400565 contig265end:-16336 MsG0080048284.01.T01:CDS
ATTACAAGCCAAGAAGCTTA+AGG 0.413672 contig265end:-12045 MsG0080048284.01.T01:CDS
ATGGATAAGGCTTCTATCAT+TGG 0.423797 contig265end:-12098 MsG0080048284.01.T01:CDS
CCCATAGCTTTAAATTTGGC+AGG 0.425488 contig265end:+11313 None:intergenic
TTTGGTTCCCAATATAACTA+AGG 0.432332 contig265end:-12540 MsG0080048284.01.T01:intron
CCACATCTGACATGTTCAAT+TGG 0.447204 contig265end:+17340 None:intergenic
CGTAAAGCTTATCCTTCATT+CGG 0.448572 contig265end:+12573 None:intergenic
AAGGTATGAATTCAAAGCCT+TGG 0.451801 contig265end:+11271 None:intergenic
TGAAAATAGGTGAAAGACTC+TGG 0.451976 contig265end:-11348 MsG0080048284.01.T01:intron
CATAAATCTTACGATTCATT+CGG 0.458821 contig265end:+16291 None:intergenic
GCATATTGAAGCATTGTTGT+TGG 0.458900 contig265end:+11938 None:intergenic
AATATGCAAGAAAATTGTCC+AGG 0.466755 contig265end:-11922 MsG0080048284.01.T01:intron
GATTATGCGTGTTTCGGTGT+TGG 0.467110 contig265end:+11040 None:intergenic
GCCAGGGAAATTGCTCTTGT+CGG 0.471631 contig265end:+17362 None:intergenic
AAATGATAGATCCAAGACTT+TGG 0.473297 contig265end:-12618 MsG0080048284.01.T01:CDS
CTTTGGTTTCTGAGAGGAGG+AGG 0.477163 contig265end:-12601 MsG0080048284.01.T01:CDS
AATTTGGCCACTGTTTCTGA+TGG 0.483700 contig265end:-11667 MsG0080048284.01.T01:CDS
GACAATGTTCGTATCGTGTC+CGG 0.486310 contig265end:+11139 None:intergenic
CCTCTCAGAAACCAAAGTCT+TGG 0.490550 contig265end:+12607 None:intergenic
TAGTATGCAATAAAGGAGAA+AGG 0.490974 contig265end:-11750 MsG0080048284.01.T01:CDS
TCTGACATGTTCAATTGGCC+AGG 0.498085 contig265end:+17345 None:intergenic
CTTTGGTTTATGCGCGGAGG+AGG 0.506149 contig265end:-16319 MsG0080048284.01.T01:CDS
AGTATGCAATAAAGGAGAAA+GGG 0.509855 contig265end:-11749 MsG0080048284.01.T01:CDS
GAGGAGGCGCAGCCGAATGA+AGG 0.515398 contig265end:-12585 MsG0080048284.01.T01:CDS
ATGTGTCAAGCGTGAAAAGA+AGG 0.518768 contig265end:+11252 None:intergenic
ATGTTTCAAGTGGATGAAAG+AGG 0.519776 contig265end:-11787 MsG0080048284.01.T01:CDS
GTTTATGCGCGGAGGAGGCA+AGG 0.524760 contig265end:-16314 MsG0080048284.01.T01:CDS
CCTGCCAAATTTAAAGCTAT+GGG 0.525800 contig265end:-11313 MsG0080048284.01.T01:CDS
TGTTTCAAGTGGATGAAAGA+GGG 0.533128 contig265end:-11786 MsG0080048284.01.T01:CDS
TGTTGTAGTTGTTGCAGGAG+AGG 0.541935 contig265end:+12688 None:intergenic
ATCAACACTTGTAGTTGTTG+TGG 0.544215 contig265end:+12658 None:intergenic
AGCCAAGAAGCTTAAGGCTG+AGG 0.549244 contig265end:-12039 MsG0080048284.01.T01:CDS
GCCGACAAGAGCAATTTCCC+TGG 0.550988 contig265end:-17363 MsG0080048284.01.T01:CDS
TGAAGTACGGATACGGACAC+CGG 0.557544 contig265end:-11158 MsG0080048284.01.T01:three_prime_UTR
GAGACGTGAACTTTGAAGTA+CGG 0.562466 contig265end:-11171 MsG0080048284.01.T01:three_prime_UTR
AGACTTTGGTTTCTGAGAGG+AGG 0.567716 contig265end:-12604 MsG0080048284.01.T01:CDS
GAAATAAGAGTAGAAAATGA+TGG 0.570766 contig265end:-12722 MsG0080048284.01.T01:CDS
GTAGATTGATATGTTTCAAG+TGG 0.578490 contig265end:-11797 MsG0080048284.01.T01:intron
GCAGTGTCCAAAACTCATCA+AGG 0.579680 contig265end:-11993 MsG0080048284.01.T01:CDS
TGAACTTTGAAGTACGGATA+CGG 0.596177 contig265end:-11165 MsG0080048284.01.T01:three_prime_UTR
CCAAGACTTTGGTTTCTGAG+AGG 0.603254 contig265end:-12607 MsG0080048284.01.T01:CDS
CACTGACATAAGTACATGCA+AGG 0.606253 contig265end:+16115 None:intergenic
TGTCGTGTCGGTGTCAGACA+CGG 0.612239 contig265end:-11070 MsG0080048284.01.T01:three_prime_UTR
CTGACATGTTCAATTGGCCA+GGG 0.618816 contig265end:+17346 None:intergenic
TGTAATTATATGTGTCGTGT+CGG 0.620351 contig265end:-11082 MsG0080048284.01.T01:three_prime_UTR
CCGCGCATAAACCAAAGTCT+CGG 0.627806 contig265end:+16325 None:intergenic
TAGAAAACCATCAGAAACAG+TGG 0.631132 contig265end:+11660 None:intergenic
GCATGTACTTATGTCAGTGA+TGG 0.640310 contig265end:-16111 MsG0080048284.01.T01:intron
ACCGAAACACGCATAATCTG+AGG 0.644213 contig265end:-11035 MsG0080048284.01.T01:three_prime_UTR
ATGCAATAAAGGAGAAAGGG+TGG 0.655643 contig265end:-11746 MsG0080048284.01.T01:CDS
CCGAGACTTTGGTTTATGCG+CGG 0.662097 contig265end:-16325 MsG0080048284.01.T01:CDS
AGACTTTGGTTTATGCGCGG+AGG 0.662307 contig265end:-16322 MsG0080048284.01.T01:CDS
CCAATTGAACATGTCAGATG+TGG 0.683998 contig265end:-17340 MsG0080048284.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAAAAAAAAAAAAAAAC+GGG + contig265end:14687-14706 None:intergenic 10.0%
!! ATAGAATATCAATTATATAT+AGG + contig265end:12335-12354 None:intergenic 10.0%
!! TCAAAAAAATAAATACTAAT+TGG + contig265end:13062-13081 None:intergenic 10.0%
!!! TATATTTTATTTTTCTCTTT+GGG + contig265end:14758-14777 None:intergenic 10.0%
!!! TTTTTGTAGTTAATTAAAAT+CGG + contig265end:14384-14403 None:intergenic 10.0%
!!! TTTTTTTTTTTATCTATCAT+GGG - contig265end:14692-14711 MsG0080048284.01.T01:intron 10.0%
!!! TTTTTTTTTTTTATCTATCA+TGG - contig265end:14691-14710 MsG0080048284.01.T01:intron 10.0%
!! ATATATTTAACCTTAAATAG+AGG + contig265end:16586-16605 None:intergenic 15.0%
!! ATTATATTTATAGATGGATA+AGG - contig265end:16078-16097 MsG0080048284.01.T01:intron 15.0%
!! CTTAATTAAAAACTGTTAAA+TGG + contig265end:12571-12590 None:intergenic 15.0%
!! TAACTATCTTTATCTATTAA+TGG - contig265end:17352-17371 MsG0080048284.01.T01:CDS 15.0%
!! TAATGTTGTAATTCTAATTA+AGG - contig265end:16975-16994 MsG0080048284.01.T01:intron 15.0%
!! TATATAACTCCTTAAAAAAA+TGG + contig265end:14556-14575 None:intergenic 15.0%
!! TATATTTAACCTTAAATAGA+GGG + contig265end:16585-16604 None:intergenic 15.0%
!! TATTTAGTTATATGTATAGA+TGG - contig265end:12352-12371 MsG0080048284.01.T01:intron 15.0%
!!! AAGATTCTTTTAAAATCATA+TGG - contig265end:14732-14751 MsG0080048284.01.T01:intron 15.0%
!!! ATTTACTTTTTATAGATGAT+TGG + contig265end:11360-11379 None:intergenic 15.0%
!!! CATTGATTAAATCAAATTAA+GGG - contig265end:14107-14126 MsG0080048284.01.T01:intron 15.0%
!!! CTTAATTTGATTTAATCAAT+GGG + contig265end:14108-14127 None:intergenic 15.0%
!!! GTATATTTTATTTTTCTCTT+TGG + contig265end:14759-14778 None:intergenic 15.0%
!!! TATTGTAATTTGTAACATTT+TGG - contig265end:16357-16376 MsG0080048284.01.T01:CDS 15.0%
!!! TTTTTATTACCATAACATTT+AGG + contig265end:16758-16777 None:intergenic 15.0%
!! AATATAACACATTACAAAGT+AGG - contig265end:12796-12815 MsG0080048284.01.T01:intron 20.0%
!! AATTAAAAACTGTTAAATGG+AGG + contig265end:12568-12587 None:intergenic 20.0%
!! ACATTATTTAATCTGTTGAA+AGG - contig265end:14628-14647 MsG0080048284.01.T01:intron 20.0%
!! AGAAGAGAATAAGATATTAA+AGG + contig265end:13387-13406 None:intergenic 20.0%
!! ATCTATAAAAAGTAAATCTG+TGG - contig265end:11363-11382 MsG0080048284.01.T01:intron 20.0%
!! CAAAACTTTGATTCATTATA+AGG + contig265end:15322-15341 None:intergenic 20.0%
!! CAGATAATGAAATAGAATAA+TGG + contig265end:16791-16810 None:intergenic 20.0%
!! CTAAAAAAACCTAAATGTTA+TGG - contig265end:16746-16765 MsG0080048284.01.T01:intron 20.0%
!! GAAGAGAATAAGATATTAAA+GGG + contig265end:13386-13405 None:intergenic 20.0%
!! GTTAAAATAGTATGCAATAA+AGG - contig265end:16432-16451 MsG0080048284.01.T01:intron 20.0%
!! GTTAAGATTCATTGTAAATA+AGG - contig265end:12214-12233 MsG0080048284.01.T01:intron 20.0%
!! TATCAATAGAGTTACATATA+GGG + contig265end:17334-17353 None:intergenic 20.0%
!! TCAAATTTATGTTGAGTTTA+AGG - contig265end:11969-11988 MsG0080048284.01.T01:CDS 20.0%
!! TCATGTTATTATGTGAAAAT+AGG - contig265end:16828-16847 MsG0080048284.01.T01:intron 20.0%
!! TCTAAAAATAATACAGTACT+CGG - contig265end:14599-14618 MsG0080048284.01.T01:intron 20.0%
!! TTATCAATAGAGTTACATAT+AGG + contig265end:17335-17354 None:intergenic 20.0%
!! TTCGTAACTTTCAAATAATT+CGG + contig265end:11082-11101 None:intergenic 20.0%
!!! AAACAAAATTACATGCTTTT+AGG - contig265end:16671-16690 MsG0080048284.01.T01:intron 20.0%
!!! ACAATGAATCTTAACTATTT+TGG + contig265end:15934-15953 None:intergenic 20.0%
!!! CCATTGATTAAATCAAATTA+AGG - contig265end:14106-14125 MsG0080048284.01.T01:intron 20.0%
!!! CCTTAATTTGATTTAATCAA+TGG + contig265end:14109-14128 None:intergenic 20.0%
!!! CTAATTAAGGTTTTATTAGA+TGG - contig265end:16988-17007 MsG0080048284.01.T01:intron 20.0%
!!! CTATTAATGGATCATTTATA+AGG - contig265end:17365-17384 MsG0080048284.01.T01:CDS 20.0%
!!! GATATTAATTTTGGTGTAAA+GGG + contig265end:14837-14856 None:intergenic 20.0%
!!! TATTTTGGATAGTAACATAT+AGG + contig265end:15919-15938 None:intergenic 20.0%
!!! TGATATTAATTTTGGTGTAA+AGG + contig265end:14838-14857 None:intergenic 20.0%
!!! TTGGTAAATTGAATCTTTTT+GGG + contig265end:16235-16254 None:intergenic 20.0%
! AAATTTCATACAAGCATAAG+AGG - contig265end:12247-12266 MsG0080048284.01.T01:intron 25.0%
! AACTTTGACATGATGAATAA+TGG + contig265end:14889-14908 None:intergenic 25.0%
! AAGTAGTCAACATTAAAACA+TGG - contig265end:13470-13489 MsG0080048284.01.T01:intron 25.0%
! AAGTGTACCTTAGTTATATT+GGG + contig265end:15659-15678 None:intergenic 25.0%
! AATCAACTGAAAAAAGCTTA+TGG - contig265end:12030-12049 MsG0080048284.01.T01:CDS 25.0%
! ACATATTACAACAACTATGT+TGG + contig265end:12762-12781 None:intergenic 25.0%
! ATCCAATAATATGATTGCAA+TGG - contig265end:14168-14187 MsG0080048284.01.T01:intron 25.0%
! ATGCTTGTATGAAATTTACA+AGG + contig265end:12244-12263 None:intergenic 25.0%
! CAACATAAATTTGAAGATAG+TGG + contig265end:11963-11982 None:intergenic 25.0%
! CAATGTTCAGAATTCAAATT+TGG - contig265end:16506-16525 MsG0080048284.01.T01:intron 25.0%
! CATAAATCTTACGATTCATT+CGG + contig265end:11901-11920 None:intergenic 25.0%
! CTCAAATAAAAAGCAAGTAA+AGG + contig265end:16027-16046 None:intergenic 25.0%
! GAAATAAGAGTAGAAAATGA+TGG - contig265end:15467-15486 MsG0080048284.01.T01:intron 25.0%
! GCTATATGATGACATAAATT+CGG + contig265end:12664-12683 None:intergenic 25.0%
! GTTAAATATTGTTTCAGTCA+AGG + contig265end:15002-15021 None:intergenic 25.0%
! TATCTATGTTGTGATCAAAT+GGG + contig265end:15376-15395 None:intergenic 25.0%
! TCTTGATAAATGACAATGAT+TGG - contig265end:11394-11413 MsG0080048284.01.T01:intron 25.0%
! TGAAGACATTCAAATAGATA+GGG - contig265end:11528-11547 MsG0080048284.01.T01:intron 25.0%
! TGATATTTATCAAACAAACC+TGG + contig265end:16288-16307 None:intergenic 25.0%
! TGATTGAATTACAACTTCTT+TGG + contig265end:12127-12146 None:intergenic 25.0%
! TTATAAGATGAAAATCGCTT+CGG - contig265end:15874-15893 MsG0080048284.01.T01:intron 25.0%
! TTATCTATGTTGTGATCAAA+TGG + contig265end:15377-15396 None:intergenic 25.0%
! TTGATGAATTGATCAAAGTT+TGG + contig265end:15246-15265 None:intergenic 25.0%
!! AAATTTTGCTTCCTAGAAAT+AGG + contig265end:11201-11220 None:intergenic 25.0%
!! AATATGTAAGAGAGAAGTAT+CGG + contig265end:13154-13173 None:intergenic 25.0%
!! AATTCATCAATTTGATTCGT+GGG - contig265end:15256-15275 MsG0080048284.01.T01:intron 25.0%
!! AATTTGTAACATTTTGGATG+TGG - contig265end:16363-16382 MsG0080048284.01.T01:CDS 25.0%
!! AGCGATTTTCATCTTATAAA+TGG + contig265end:15873-15892 None:intergenic 25.0%
!! CCAATAAGTTTTCATTATCA+CGG - contig265end:10984-11003 MsG0080048284.01.T01:three_prime_UTR 25.0%
!! TCAGTGTTTTTCTAAACAAT+AGG - contig265end:17275-17294 MsG0080048284.01.T01:intron 25.0%
!! TGAAGCATCTTTAACATAAA+GGG - contig265end:12463-12482 MsG0080048284.01.T01:intron 25.0%
!! TGGTAAATTGAATCTTTTTG+GGG + contig265end:16234-16253 None:intergenic 25.0%
!! TTGAAGCATCTTTAACATAA+AGG - contig265end:12462-12481 MsG0080048284.01.T01:intron 25.0%
!! TTTATCATAATTTGAAGCAG+CGG + contig265end:15804-15823 None:intergenic 25.0%
!!! ATAATGAATTTGTTTCTACG+CGG + contig265end:12606-12625 None:intergenic 25.0%
!!! ATGGTTTTAAATTGTTGTTG+CGG - contig265end:15680-15699 MsG0080048284.01.T01:intron 25.0%
!!! GTAATTTTGTTTTGTAGAGA+CGG + contig265end:16663-16682 None:intergenic 25.0%
!!! GTTGGTAAATTGAATCTTTT+TGG + contig265end:16236-16255 None:intergenic 25.0%
!!! TGCATTTTGCCATTTTTTTA+AGG - contig265end:14544-14563 MsG0080048284.01.T01:intron 25.0%
!!! TTCTGTTTTTCTCTCTAATT+GGG - contig265end:13406-13425 MsG0080048284.01.T01:intron 25.0%
AAAAACACTGACATTGCTAT+TGG + contig265end:17266-17285 None:intergenic 30.0%
AAAGAACCAAGTTAAGAAGT+AGG + contig265end:15419-15438 None:intergenic 30.0%
AAATGATAGATCCAAGACTT+TGG - contig265end:15571-15590 MsG0080048284.01.T01:intron 30.0%
AAATGATATATCCGAGACTT+TGG - contig265end:11853-11872 MsG0080048284.01.T01:intron 30.0%
AAGATGAAGACCAACTATTT+AGG - contig265end:12162-12181 MsG0080048284.01.T01:intron 30.0%
AATATGCAAGAAAATTGTCC+AGG - contig265end:16267-16286 MsG0080048284.01.T01:intron 30.0%
AATTCGTAGAGACTAAAATG+TGG - contig265end:16715-16734 MsG0080048284.01.T01:intron 30.0%
AGATGAAGACCAACTATTTA+GGG - contig265end:12163-12182 MsG0080048284.01.T01:intron 30.0%
AGCTATATTCCCTCTATTTA+AGG - contig265end:16573-16592 MsG0080048284.01.T01:intron 30.0%
AGTACTAATGATGTTCTCTT+TGG - contig265end:13507-13526 MsG0080048284.01.T01:intron 30.0%
AGTATGCAATAAAGGAGAAA+GGG - contig265end:16440-16459 MsG0080048284.01.T01:intron 30.0%
ATACTAAAGCTACTATTGCA+GGG + contig265end:11580-11599 None:intergenic 30.0%
ATCAAGTGATTGAACTCAAA+TGG - contig265end:14923-14942 MsG0080048284.01.T01:intron 30.0%
ATGGTTTAACGATCATTTGA+TGG - contig265end:11150-11169 MsG0080048284.01.T01:three_prime_UTR 30.0%
ATTAACACATAATACTTCCC+CGG + contig265end:14318-14337 None:intergenic 30.0%
ATTATTCTGGACCATTTATG+AGG - contig265end:11432-11451 MsG0080048284.01.T01:intron 30.0%
ATTCTCTATTCCAATCTTCT+GGG - contig265end:12885-12904 MsG0080048284.01.T01:intron 30.0%
ATTTCTCTTGTGAAACCATT+AGG - contig265end:15744-15763 MsG0080048284.01.T01:intron 30.0%
CAATGCAAGTAATCTAACAA+AGG - contig265end:13852-13871 MsG0080048284.01.T01:intron 30.0%
CCAATTTGAGCCATTATTAT+CGG - contig265end:17240-17259 MsG0080048284.01.T01:intron 30.0%
CTCCATTGCAATCATATTAT+TGG + contig265end:14173-14192 None:intergenic 30.0%
GAAATAAGAGCAGAAAATGA+TGG - contig265end:11741-11760 MsG0080048284.01.T01:CDS 30.0%
GAAGTGTACCTTAGTTATAT+TGG + contig265end:15660-15679 None:intergenic 30.0%
GATATATAGCCCTAAATAGT+TGG + contig265end:12175-12194 None:intergenic 30.0%
GATTTATGCATTGCATTCTT+TGG - contig265end:11913-11932 MsG0080048284.01.T01:intron 30.0%
GTAACATATAGGCTAAATAG+TGG + contig265end:15908-15927 None:intergenic 30.0%
GTAGATTGATATGTTTCAAG+TGG - contig265end:16392-16411 MsG0080048284.01.T01:intron 30.0%
GTGAAGACATTCAAATAGAT+AGG - contig265end:11527-11546 MsG0080048284.01.T01:intron 30.0%
TAGTATGCAATAAAGGAGAA+AGG - contig265end:16439-16458 MsG0080048284.01.T01:intron 30.0%
TATAACTAAGGTACACTTCA+TGG - contig265end:15661-15680 MsG0080048284.01.T01:intron 30.0%
TGTAATTATATGTGTCGTGT+CGG - contig265end:17107-17126 MsG0080048284.01.T01:intron 30.0%
TTTCTCTTGTGAAACCATTA+GGG - contig265end:15745-15764 MsG0080048284.01.T01:intron 30.0%
TTTGATCCTACTTCTTAACT+TGG - contig265end:15410-15429 MsG0080048284.01.T01:intron 30.0%
! AATCTTTTCTCTTTCCTGAA+AGG + contig265end:14718-14737 None:intergenic 30.0%
! AATTGATCCTTGATGAGTTT+TGG + contig265end:16206-16225 None:intergenic 30.0%
! ATTAGTGCTTTTCTAAACCA+AGG - contig265end:16901-16920 MsG0080048284.01.T01:intron 30.0%
! ATTCATCAATTTGATTCGTG+GGG - contig265end:15257-15276 MsG0080048284.01.T01:intron 30.0%
! CAATTCATCAATTTGATTCG+TGG - contig265end:15255-15274 MsG0080048284.01.T01:intron 30.0%
! CCGTGATAATGAAAACTTAT+TGG + contig265end:10987-11006 None:intergenic 30.0%
! GCTTTCTCAACAAATTTTGA+TGG - contig265end:11705-11724 MsG0080048284.01.T01:CDS 30.0%
! GTATTTTGTATGTCCCATAT+CGG + contig265end:10949-10968 None:intergenic 30.0%
! GTTAGAAGAGACAAATGTTT+TGG + contig265end:13238-13257 None:intergenic 30.0%
! TTTGGTTCCCAATATAACTA+AGG - contig265end:15649-15668 MsG0080048284.01.T01:intron 30.0%
! TTTTACTCTGTCTTACTTGA+AGG - contig265end:14215-14234 MsG0080048284.01.T01:intron 30.0%
! TTTTCTAAACAATAGGCAAG+TGG - contig265end:17282-17301 MsG0080048284.01.T01:intron 30.0%
!! ATCACCCATAGCTTTAAATT+TGG + contig265end:16883-16902 None:intergenic 30.0%
!! CTTCTGTTTTTCTCTCTAAT+TGG - contig265end:13405-13424 MsG0080048284.01.T01:intron 30.0%
!! GAGAAATTTTGACGACATTT+TGG + contig265end:15731-15750 None:intergenic 30.0%
!! GATATATCATTTTTCGGCTT+TGG + contig265end:11845-11864 None:intergenic 30.0%
!! GATCTATCATTTTTCGACTT+TGG + contig265end:15563-15582 None:intergenic 30.0%
!! GTCTCGGATATATCATTTTT+CGG + contig265end:11851-11870 None:intergenic 30.0%
!! TATACAAGTGATGGACAATA+TGG + contig265end:14294-14313 None:intergenic 30.0%
!!! CTCAGTGGTTCTAATTTTTT+GGG + contig265end:13261-13280 None:intergenic 30.0%
!!! TCAGTGGTTCTAATTTTTTG+GGG + contig265end:13260-13279 None:intergenic 30.0%
!!! TCTCAGTGGTTCTAATTTTT+TGG + contig265end:13262-13281 None:intergenic 30.0%
!!! TGCAATGGAGCTTTATTTTA+TGG - contig265end:14183-14202 MsG0080048284.01.T01:intron 30.0%
AACCAAAATAGACGACACAA+TGG - contig265end:15155-15174 MsG0080048284.01.T01:intron 35.0%
AAGATGTGAATGACCGATAT+GGG - contig265end:10933-10952 MsG0080048284.01.T01:three_prime_UTR 35.0%
AAGGTATGAATTCAAAGCCT+TGG + contig265end:16921-16940 None:intergenic 35.0%
ACATCTTGTTGAAAGGAAGA+GGG + contig265end:10920-10939 None:intergenic 35.0%
ACTGAAAAAAGCTTATGGAC+AGG - contig265end:12035-12054 MsG0080048284.01.T01:CDS 35.0%
ATACGAATACGATACCGATA+TGG + contig265end:13731-13750 None:intergenic 35.0%
ATCAACACTTGTAGTTGTTG+TGG + contig265end:15534-15553 None:intergenic 35.0%
ATCACAAGCCTAGAAACTTA+AGG - contig265end:12424-12443 MsG0080048284.01.T01:intron 35.0%
ATGGATAAGGCTTCTATCAT+TGG - contig265end:16091-16110 MsG0080048284.01.T01:intron 35.0%
ATGGTCCAGAATAATCACAA+AGG + contig265end:11427-11446 None:intergenic 35.0%
ATTACAAGCCAAGAAGCTTA+AGG - contig265end:16144-16163 MsG0080048284.01.T01:CDS 35.0%
ATTTCACTTTCACATCATCC+TGG + contig265end:14503-14522 None:intergenic 35.0%
CAGAAGATTGGAATAGAGAA+TGG + contig265end:12886-12905 None:intergenic 35.0%
CATACTAAAGCTACTATTGC+AGG + contig265end:11581-11600 None:intergenic 35.0%
CATTCTCTATTCCAATCTTC+TGG - contig265end:12884-12903 MsG0080048284.01.T01:intron 35.0%
CCGATAATAATGGCTCAAAT+TGG + contig265end:17243-17262 None:intergenic 35.0%
CGTAAAGCTTATCCTTCATT+CGG + contig265end:15619-15638 None:intergenic 35.0%
GACGATGCAGTCAATTTAAA+CGG + contig265end:11233-11252 None:intergenic 35.0%
GTCATTCACATCTTGTTGAA+AGG + contig265end:10927-10946 None:intergenic 35.0%
GTGGTAGTATGTGTAAAAAG+AGG - contig265end:17301-17320 MsG0080048284.01.T01:intron 35.0%
TAACAGTATCAAAGCTAACC+AGG - contig265end:14482-14501 MsG0080048284.01.T01:intron 35.0%
TAGAAAACCATCAGAAACAG+TGG + contig265end:16532-16551 None:intergenic 35.0%
TAGTCACACACTTCTCAATT+CGG + contig265end:11131-11150 None:intergenic 35.0%
TATTTCAAGCGCCTCATAAA+TGG + contig265end:11446-11465 None:intergenic 35.0%
TCTATTTGAATGTCTTCACG+CGG + contig265end:11526-11545 None:intergenic 35.0%
TGAAAATAGGTGAAAGACTC+TGG - contig265end:16841-16860 MsG0080048284.01.T01:intron 35.0%
TGGTTGAACGTTGAAACATA+TGG + contig265end:15140-15159 None:intergenic 35.0%
TTAATGTTTGCAAGTGTCTC+TGG + contig265end:15189-15208 None:intergenic 35.0%
TTGTCCATCACTTGTATATC+CGG - contig265end:14296-14315 MsG0080048284.01.T01:intron 35.0%
! AATTGAGAAGTGTGTGACTA+TGG - contig265end:11131-11150 MsG0080048284.01.T01:three_prime_UTR 35.0%
! ACCTGCCAAATTTAAAGCTA+TGG - contig265end:16875-16894 MsG0080048284.01.T01:intron 35.0%
! AGCAGAAAATGATGGTGAAT+TGG - contig265end:11749-11768 MsG0080048284.01.T01:CDS 35.0%
! ATGTTGTGATCAAATGGGTT+TGG + contig265end:15371-15390 None:intergenic 35.0%
! ATGTTTCAAGTGGATGAAAG+AGG - contig265end:16402-16421 MsG0080048284.01.T01:intron 35.0%
! ATTTTCTCGTATCGCCATAT+CGG - contig265end:13714-13733 MsG0080048284.01.T01:intron 35.0%
! CCTGCCAAATTTAAAGCTAT+GGG - contig265end:16876-16895 MsG0080048284.01.T01:intron 35.0%
! GGAAATTTTATCATTGAGCG+AGG - contig265end:12858-12877 MsG0080048284.01.T01:intron 35.0%
! GTTGAGTTTAAGGTCATGTT+TGG - contig265end:11979-11998 MsG0080048284.01.T01:CDS 35.0%
! TGTTTCAAGTGGATGAAAGA+GGG - contig265end:16403-16422 MsG0080048284.01.T01:intron 35.0%
! TTCCATTGTGTCGTCTATTT+TGG + contig265end:15160-15179 None:intergenic 35.0%
! TTGCTATTGGCCGATAATAA+TGG + contig265end:17253-17272 None:intergenic 35.0%
! TTTCAGTCAAGGTTCTAACT+CGG + contig265end:14991-15010 None:intergenic 35.0%
! TTTGGTTCCCAACATAACTA+AGG - contig265end:11931-11950 MsG0080048284.01.T01:CDS 35.0%
! TTTTGATGGAGAAGCTAAGA+GGG - contig265end:11719-11738 MsG0080048284.01.T01:CDS 35.0%
!! AAATTTGGCAGGTTGATTTC+TGG + contig265end:16868-16887 None:intergenic 35.0%
!! ATTTTGATGGAGAAGCTAAG+AGG - contig265end:11718-11737 MsG0080048284.01.T01:CDS 35.0%
!! CTGCAATAGTAGCTTTAGTA+TGG - contig265end:11579-11598 MsG0080048284.01.T01:intron 35.0%
!! GACATTTTGGCGCAATATAA+AGG + contig265end:15718-15737 None:intergenic 35.0%
!! GCATATTGAAGCATTGTTGT+TGG + contig265end:16254-16273 None:intergenic 35.0%
!! TGAACTTTGAAGTACGGATA+CGG - contig265end:17024-17043 MsG0080048284.01.T01:intron 35.0%
!!! AGATTTTGAAGTCTCCCTAA+TGG + contig265end:15762-15781 None:intergenic 35.0%
!!! GGTTCTTTCTCTTGTTTTGA+TGG - contig265end:15431-15450 MsG0080048284.01.T01:intron 35.0%
!!! TGTTTTGATGGAGAAGCTAA+GGG - contig265end:15443-15462 MsG0080048284.01.T01:intron 35.0%
!!! TTGTTTTGATGGAGAAGCTA+AGG - contig265end:15442-15461 MsG0080048284.01.T01:intron 35.0%
AAAGGGTTGAAACTTGGGAT+CGG + contig265end:11302-11321 None:intergenic 40.0%
AACAAAGTAGAACTCACCAG+AGG + contig265end:13326-13345 None:intergenic 40.0%
AACCTCAGCCTTAAGTTTCT+AGG + contig265end:12435-12454 None:intergenic 40.0%
ATCAACACTTGTAGCTGTTG+CGG + contig265end:11816-11835 None:intergenic 40.0%
ATGCAAAGAACCCAGAAGAT+TGG + contig265end:12898-12917 None:intergenic 40.0%
ATGCAATAAAGGAGAAAGGG+TGG - contig265end:16443-16462 MsG0080048284.01.T01:intron 40.0%
ATGTGTCAAGCGTGAAAAGA+AGG + contig265end:16940-16959 None:intergenic 40.0%
ATTCGTATCGTGTCAGGTAT+CGG - contig265end:13743-13762 MsG0080048284.01.T01:intron 40.0%
CAAGATGTGAATGACCGATA+TGG - contig265end:10932-10951 MsG0080048284.01.T01:three_prime_UTR 40.0%
CACATCTTGTTGAAAGGAAG+AGG + contig265end:10921-10940 None:intergenic 40.0%
CACTGACATAAGTACATGCA+AGG + contig265end:12077-12096 None:intergenic 40.0%
CATTACAAAGTAGGAAGCAG+TGG - contig265end:12805-12824 MsG0080048284.01.T01:intron 40.0%
CCAATTGAACATGTCAGATG+TGG - contig265end:10849-10868 MsG0080048284.01.T01:three_prime_UTR 40.0%
CCACATCTGACATGTTCAAT+TGG + contig265end:10852-10871 None:intergenic 40.0%
CCTAGAAATAGGATTGTGGT+GGG + contig265end:11190-11209 None:intergenic 40.0%
CTGCAGTGAAAATTTCTGCT+GGG - contig265end:11683-11702 MsG0080048284.01.T01:CDS 40.0%
GACAACTCACAGTTAGTTAG+AGG - contig265end:13912-13931 MsG0080048284.01.T01:intron 40.0%
GACTGCCTTTGTGATTATTC+TGG - contig265end:11419-11438 MsG0080048284.01.T01:intron 40.0%
GAGATATTTATCGCTCTCAG+TGG + contig265end:13276-13295 None:intergenic 40.0%
GATGCAAAATTTCTCAAGCC+CGG - contig265end:11649-11668 MsG0080048284.01.T01:CDS 40.0%
GCATGTACTTATGTCAGTGA+TGG - contig265end:12078-12097 MsG0080048284.01.T01:CDS 40.0%
GCGTGTACCTTAGTTATGTT+GGG + contig265end:11941-11960 None:intergenic 40.0%
GCTTCCTAGAAATAGGATTG+TGG + contig265end:11194-11213 None:intergenic 40.0%
GTGAGTTGTCCATTAAGTGT+GGG + contig265end:13902-13921 None:intergenic 40.0%
TACTTCACCGATACACGTAT+CGG + contig265end:13035-13054 None:intergenic 40.0%
TATCGTATTCGTATCGTGTC+AGG - contig265end:13737-13756 MsG0080048284.01.T01:intron 40.0%
TCAAAACTCCCGATACGATA+CGG + contig265end:13692-13711 None:intergenic 40.0%
TCCTAGAAATAGGATTGTGG+TGG + contig265end:11191-11210 None:intergenic 40.0%
TCCTCAGATTATGCGTGTTT+CGG + contig265end:17158-17177 None:intergenic 40.0%
TGTCCATCACTTGTATATCC+GGG - contig265end:14297-14316 MsG0080048284.01.T01:intron 40.0%
TGTGAGTTGTCCATTAAGTG+TGG + contig265end:13903-13922 None:intergenic 40.0%
TTATCTATCATGGGCCTTTC+AGG - contig265end:14701-14720 MsG0080048284.01.T01:intron 40.0%
! AACATGTCAGATGTGGCTTT+TGG - contig265end:10856-10875 MsG0080048284.01.T01:three_prime_UTR 40.0%
! GTTTTGTAGAGACGGAAAAG+TGG + contig265end:16655-16674 None:intergenic 40.0%
! TACGTGTATCGGTGAAGTAT+CGG - contig265end:13036-13055 MsG0080048284.01.T01:intron 40.0%
! TTGTGATCAAATGGGTTTGG+AGG + contig265end:15368-15387 None:intergenic 40.0%
! TTTTGATGGAGAAGCTAAGG+GGG - contig265end:15445-15464 MsG0080048284.01.T01:intron 40.0%
!! AATTTGGCCACTGTTTCTGA+TGG - contig265end:16522-16541 MsG0080048284.01.T01:intron 40.0%
!! AGTGGTGTTGCAATTTGGAT+GGG - contig265end:12823-12842 MsG0080048284.01.T01:intron 40.0%
!! ATGCTTGTTGTAGTTGTTGC+AGG + contig265end:15509-15528 None:intergenic 40.0%
!! CCCATAGCTTTAAATTTGGC+AGG + contig265end:16879-16898 None:intergenic 40.0%
!! CTTTCAAATAATTCGGTGCG+TGG + contig265end:11075-11094 None:intergenic 40.0%
!! GAGACGTGAACTTTGAAGTA+CGG - contig265end:17018-17037 MsG0080048284.01.T01:intron 40.0%
!! GTTTTGATGGAGAAGCTAAG+GGG - contig265end:15444-15463 MsG0080048284.01.T01:intron 40.0%
!! TAAGAGAGAAGTATCGGTGT+CGG + contig265end:13148-13167 None:intergenic 40.0%
!!! GGATACGTGTTTTGGAGTAT+CGG + contig265end:12988-13007 None:intergenic 40.0%
AAACTTAAGGCTGAGGTTGC+AGG - contig265end:12437-12456 MsG0080048284.01.T01:intron 45.0%
AAAGCTACTATTGCAGGGAC+TGG + contig265end:11575-11594 None:intergenic 45.0%
AACCTCAGCCTTAAGCTTCT+TGG + contig265end:16155-16174 None:intergenic 45.0%
AAGGGCAAAGGGTTGAAACT+TGG + contig265end:11308-11327 None:intergenic 45.0%
ACACATACACTCACATGGGA+AGG + contig265end:11327-11346 None:intergenic 45.0%
ACACTTCTCAATTCGGTACG+TGG + contig265end:11124-11143 None:intergenic 45.0%
ACCATTAGGCTGCAACAATC+GGG + contig265end:11255-11274 None:intergenic 45.0%
ACCGAAACACGCATAATCTG+AGG - contig265end:17154-17173 MsG0080048284.01.T01:intron 45.0%
ACGTCATAACAGCCACCATT+AGG + contig265end:11269-11288 None:intergenic 45.0%
ACTTCACCGATACACGTATC+GGG + contig265end:13034-13053 None:intergenic 45.0%
ACTTTGACTATGCCAGCATC+TGG + contig265end:11622-11641 None:intergenic 45.0%
AGCCTAGAAACTTAAGGCTG+AGG - contig265end:12430-12449 MsG0080048284.01.T01:intron 45.0%
AGGGCAAAGGGTTGAAACTT+GGG + contig265end:11307-11326 None:intergenic 45.0%
AGTATAAGTTAGCCGTACCG+GGG + contig265end:13125-13144 None:intergenic 45.0%
AGTGACCATAAAAGCAGTCC+TGG - contig265end:14346-14365 MsG0080048284.01.T01:intron 45.0%
ATACACGTATCGGGACGTAT+CGG + contig265end:13025-13044 None:intergenic 45.0%
ATACGTCCCGATACGTGTAT+CGG - contig265end:13025-13044 MsG0080048284.01.T01:intron 45.0%
ATATCGAGCCGTATCGTATC+GGG - contig265end:13681-13700 MsG0080048284.01.T01:intron 45.0%
CACATACACTCACATGGGAA+GGG + contig265end:11326-11345 None:intergenic 45.0%
CACCATTAGGCTGCAACAAT+CGG + contig265end:11256-11275 None:intergenic 45.0%
CATATCGAGCCGTATCGTAT+CGG - contig265end:13680-13699 MsG0080048284.01.T01:intron 45.0%
CCTCTCAGAAACCAAAGTCT+TGG + contig265end:15585-15604 None:intergenic 45.0%
CCTGCAGTGAAAATTTCTGC+TGG - contig265end:11682-11701 MsG0080048284.01.T01:CDS 45.0%
CTGACATGTTCAATTGGCCA+GGG + contig265end:10846-10865 None:intergenic 45.0%
GACAATGTTCGTATCGTGTC+CGG + contig265end:17053-17072 None:intergenic 45.0%
GACCACACATACACTCACAT+GGG + contig265end:11331-11350 None:intergenic 45.0%
GAGTATAAGTTAGCCGTACC+GGG + contig265end:13126-13145 None:intergenic 45.0%
GATACGGCTAACTTATACCC+CGG - contig265end:13105-13124 MsG0080048284.01.T01:intron 45.0%
GCAGTGTCCAAAACTCATCA+AGG - contig265end:16196-16215 MsG0080048284.01.T01:intron 45.0%
GCTTTACGCATTGCGTTCTT+TGG - contig265end:15631-15650 MsG0080048284.01.T01:intron 45.0%
GGAGTATAAGTTAGCCGTAC+CGG + contig265end:13127-13146 None:intergenic 45.0%
GGCGTGTACCTTAGTTATGT+TGG + contig265end:11942-11961 None:intergenic 45.0%
GTCAGTACGTTACGAGTTTG+TGG + contig265end:11041-11060 None:intergenic 45.0%
GTCCATCACTTGTATATCCG+GGG - contig265end:14298-14317 MsG0080048284.01.T01:intron 45.0%
TAGCCGTATCTGACACGTAT+CGG + contig265end:13095-13114 None:intergenic 45.0%
TCAGCTAAGCCCACACTTAA+TGG - contig265end:13890-13909 MsG0080048284.01.T01:intron 45.0%
TCTGACATGTTCAATTGGCC+AGG + contig265end:10847-10866 None:intergenic 45.0%
TGACCACACATACACTCACA+TGG + contig265end:11332-11351 None:intergenic 45.0%
TGACCGATACGTGTCAGATA+CGG - contig265end:13089-13108 MsG0080048284.01.T01:intron 45.0%
TGAGTGTATGTGTGGTCACT+AGG - contig265end:11334-11353 MsG0080048284.01.T01:CDS 45.0%
TGTTGTAGTTGTTGCAGGAG+AGG + contig265end:15504-15523 None:intergenic 45.0%
TTCCCATGTGAGTGTATGTG+TGG - contig265end:11326-11345 MsG0080048284.01.T01:CDS 45.0%
TTCCCCGGATATACAAGTGA+TGG + contig265end:14303-14322 None:intergenic 45.0%
TTCGTATCGTGTCAGGTATC+GGG - contig265end:13744-13763 MsG0080048284.01.T01:intron 45.0%
! ACAATTTGTTCGCACGAGTG+AGG + contig265end:11487-11506 None:intergenic 45.0%
! AGACTTTGGTTTCTGAGAGG+AGG - contig265end:15585-15604 MsG0080048284.01.T01:intron 45.0%
! CAATTTGTTCGCACGAGTGA+GGG + contig265end:11486-11505 None:intergenic 45.0%
! CATCAATTTGATTCGTGGGG+AGG - contig265end:15260-15279 MsG0080048284.01.T01:intron 45.0%
! CCAAGACTTTGGTTTCTGAG+AGG - contig265end:15582-15601 MsG0080048284.01.T01:intron 45.0%
! CCAGCAGAAATTTTCACTGC+AGG + contig265end:11685-11704 None:intergenic 45.0%
! CCCACCACAATCCTATTTCT+AGG - contig265end:11187-11206 MsG0080048284.01.T01:three_prime_UTR 45.0%
! GATTATGCGTGTTTCGGTGT+TGG + contig265end:17152-17171 None:intergenic 45.0%
! GTATGGATTGCCACTGATCT+AGG - contig265end:11596-11615 MsG0080048284.01.T01:intron 45.0%
!! CAGTGGTGTTGCAATTTGGA+TGG - contig265end:12822-12841 MsG0080048284.01.T01:intron 45.0%
!! CATGTCCAGGACTGCTTTTA+TGG + contig265end:14354-14373 None:intergenic 45.0%
!! GAAGCAGTGGTGTTGCAATT+TGG - contig265end:12818-12837 MsG0080048284.01.T01:intron 45.0%
!! GTGGTGTTGCAATTTGGATG+GGG - contig265end:12824-12843 MsG0080048284.01.T01:intron 45.0%
!! TCGGTATCGGATACGTGTTT+TGG + contig265end:12996-13015 None:intergenic 45.0%
!! TAGATAAAAAAAAAAAAAAA+CGG + contig265end:14688-14707 None:intergenic 5.0%
!! TATTTAATTATATTTATAGA+TGG - contig265end:16072-16091 MsG0080048284.01.T01:intron 5.0%
!!! TATTAATATGATATTAATTT+TGG + contig265end:14846-14865 None:intergenic 5.0%
AAGCTTAAGGCTGAGGTTGC+AGG - contig265end:16157-16176 MsG0080048284.01.T01:CDS 50.0%
ACTCACATGGGAAGGGCAAA+GGG + contig265end:11319-11338 None:intergenic 50.0%
AGCCAAGAAGCTTAAGGCTG+AGG - contig265end:16150-16169 MsG0080048284.01.T01:CDS 50.0%
ATTGCCTCCATCAACACCTC+TGG - contig265end:13307-13326 MsG0080048284.01.T01:intron 50.0%
CCGCGCATAAACCAAAGTCT+CGG + contig265end:11867-11886 None:intergenic 50.0%
CCGTCTAACTCCAGATTAGC+CGG - contig265end:15040-15059 MsG0080048284.01.T01:intron 50.0%
CGATTGTTGCAGCCTAATGG+TGG - contig265end:11254-11273 MsG0080048284.01.T01:exon 50.0%
GCCAGGGAAATTGCTCTTGT+CGG + contig265end:10830-10849 None:intergenic 50.0%
GGCTAACTTATACCCCGGTA+CGG - contig265end:13110-13129 MsG0080048284.01.T01:intron 50.0%
TACACGTATCGGGACGTATC+GGG + contig265end:13024-13043 None:intergenic 50.0%
TCCCGATTGTTGCAGCCTAA+TGG - contig265end:11251-11270 MsG0080048284.01.T01:exon 50.0%
TGAAGTACGGATACGGACAC+CGG - contig265end:17031-17050 MsG0080048284.01.T01:intron 50.0%
TTCGGTACGTGGTACACGTT+CGG + contig265end:11113-11132 None:intergenic 50.0%
TTGACCCTCCGACTCTCATA+AGG + contig265end:15069-15088 None:intergenic 50.0%
! AGACTTTGGTTTATGCGCGG+AGG - contig265end:11867-11886 MsG0080048284.01.T01:intron 50.0%
! CCGAGACTTTGGTTTATGCG+CGG - contig265end:11864-11883 MsG0080048284.01.T01:intron 50.0%
! CCGGCTAATCTGGAGTTAGA+CGG + contig265end:15043-15062 None:intergenic 50.0%
! CGTCTAACTCCAGATTAGCC+GGG - contig265end:15041-15060 MsG0080048284.01.T01:intron 50.0%
! CTTTGGTTTCTGAGAGGAGG+AGG - contig265end:15588-15607 MsG0080048284.01.T01:intron 50.0%
! GTGTTGATGGAGGCAATGGT+TGG + contig265end:13304-13323 None:intergenic 50.0%
! TCGTATCGTGTCAGGTATCG+GGG - contig265end:13745-13764 MsG0080048284.01.T01:intron 50.0%
!! AATCGGTGTCATGCATGTCC+AGG + contig265end:14367-14386 None:intergenic 50.0%
!! AGAGGTGTTGATGGAGGCAA+TGG + contig265end:13308-13327 None:intergenic 50.0%
!! GAACTCACCAGAGGTGTTGA+TGG + contig265end:13317-13336 None:intergenic 50.0%
ACACGTATCGGGACGTATCG+GGG + contig265end:13023-13042 None:intergenic 55.0%
CACTCACATGGGAAGGGCAA+AGG + contig265end:11320-11339 None:intergenic 55.0%
CACTGATCTAGGCCAGATGC+TGG - contig265end:11607-11626 MsG0080048284.01.T01:intron 55.0%
CAGCATCTGGCCTAGATCAG+TGG + contig265end:11609-11628 None:intergenic 55.0%
CATAAGGAGCCCGGCTAATC+TGG + contig265end:15053-15072 None:intergenic 55.0%
GCCGACAAGAGCAATTTCCC+TGG - contig265end:10826-10845 MsG0080048284.01.T01:three_prime_UTR 55.0%
GGCTCCTTATGAGAGTCGGA+GGG - contig265end:15062-15081 MsG0080048284.01.T01:intron 55.0%
TCCGACTCTCATAAGGAGCC+CGG + contig265end:15062-15081 None:intergenic 55.0%
TCGGTACGTGGTACACGTTC+GGG + contig265end:11112-11131 None:intergenic 55.0%
TTGGATGGGGCTCTCTGCAA+TGG - contig265end:12837-12856 MsG0080048284.01.T01:intron 55.0%
! CTTTGGTTTATGCGCGGAGG+AGG - contig265end:11870-11889 MsG0080048284.01.T01:intron 55.0%
! GTATCGGGGCGTATCGGTAT+CGG + contig265end:13009-13028 None:intergenic 55.0%
! GTGGTACACGTTCGGGTTCA+CGG + contig265end:11105-11124 None:intergenic 55.0%
!! CTCACCAGAGGTGTTGATGG+AGG + contig265end:13314-13333 None:intergenic 55.0%
!! TGTCGTGTCGGTGTCAGACA+CGG - contig265end:17119-17138 MsG0080048284.01.T01:intron 55.0%
ACTGCAGGCAGCAACGTTCC+GGG + contig265end:11670-11689 None:intergenic 60.0%
CACTGCAGGCAGCAACGTTC+CGG + contig265end:11671-11690 None:intergenic 60.0%
GCCGGGCTCCTTATGAGAGT+CGG - contig265end:15058-15077 MsG0080048284.01.T01:intron 60.0%
GGGCTCCTTATGAGAGTCGG+AGG - contig265end:15061-15080 MsG0080048284.01.T01:intron 60.0%
GTTTATGCGCGGAGGAGGCA+AGG - contig265end:11875-11894 MsG0080048284.01.T01:intron 60.0%
CGGGACGTATCGGGGCGTAT+CGG + contig265end:13015-13034 None:intergenic 65.0%
! GAGGAGGCGCAGCCGAATGA+AGG - contig265end:15604-15623 MsG0080048284.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig265end gene 10808 17403 10808 ID=MsG0080048284.01;Name=MsG0080048284.01
contig265end mRNA 10808 17403 10808 ID=MsG0080048284.01.T01;Parent=MsG0080048284.01;Name=MsG0080048284.01.T01;_AED=0.38;_eAED=0.43;_QI=0|0.5|0.42|0.85|1|1|7|449|318
contig265end exon 10808 11361 10808 ID=MsG0080048284.01.T01:exon:7911;Parent=MsG0080048284.01.T01
contig265end exon 11642 11815 11642 ID=MsG0080048284.01.T01:exon:7910;Parent=MsG0080048284.01.T01
contig265end exon 11923 12120 11923 ID=MsG0080048284.01.T01:exon:7909;Parent=MsG0080048284.01.T01
contig265end exon 12541 12755 12541 ID=MsG0080048284.01.T01:exon:7908;Parent=MsG0080048284.01.T01
contig265end exon 16112 16201 16112 ID=MsG0080048284.01.T01:exon:7907;Parent=MsG0080048284.01.T01
contig265end exon 16303 16389 16303 ID=MsG0080048284.01.T01:exon:7906;Parent=MsG0080048284.01.T01
contig265end exon 17316 17403 17316 ID=MsG0080048284.01.T01:exon:7905;Parent=MsG0080048284.01.T01
contig265end CDS 17316 17403 17316 ID=MsG0080048284.01.T01:cds;Parent=MsG0080048284.01.T01
contig265end CDS 16303 16389 16303 ID=MsG0080048284.01.T01:cds;Parent=MsG0080048284.01.T01
contig265end CDS 16112 16201 16112 ID=MsG0080048284.01.T01:cds;Parent=MsG0080048284.01.T01
contig265end CDS 12541 12755 12541 ID=MsG0080048284.01.T01:cds;Parent=MsG0080048284.01.T01
contig265end CDS 11923 12120 11923 ID=MsG0080048284.01.T01:cds;Parent=MsG0080048284.01.T01
contig265end CDS 11642 11815 11642 ID=MsG0080048284.01.T01:cds;Parent=MsG0080048284.01.T01
contig265end CDS 11257 11361 11257 ID=MsG0080048284.01.T01:cds;Parent=MsG0080048284.01.T01
contig265end three_prime_UTR 10808 11256 10808 ID=MsG0080048284.01.T01:three_prime_utr;Parent=MsG0080048284.01.T01
Gene Sequence

>MsG0080048284.01.T01

ATGCAAGAGAAAAATGCAGCCGACAAGAGCAATTTCCCTGGCCAATTGAACATGTCAGATGTGGCTTTTGGTTTCTCATATAAAGCTACTACAAGTGTTGATATTAAGCCAAAGCCGAAAAATGATATATCCGAGACTTTGGTTTATGCGCGGAGGAGGCAAGGCCGAATGAATCTTCAATTTAGTGCTTATAGAAATCAACTGAAAAAAGCTTATGGACAGGTAGACTATCTCAAACACCTTGCATGTACTTATGTCAGTGATGAAGCTAAGGGGGAAATAAGAGTAGAAAATGATGGTGATAATTACTCCTCTCCTGCAACAACTACAACAAGCATTACCACAACAACTACAAGTGTTGATACTAAGCCAAAGTCGAAAAATGATAGATCCAAGACTTTGGTTTCTGAGAGGAGGAGGCGCAGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTGGTTCCCAATATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCTGTTTCATATATGCATGAACTTCAATTACAAGCCAAGAAGCTTAAGGCTGAGGTTGCAGGACTTGAAGCATCATTAGCAGTGTCCAAAACTCATCAAGGATCAATTGAAAACCCCAAAAAGATTCAATTTACCAACAACAATGCTTCAATATGCAAGAAAATTGTCCAGATTGATATGTTTCAAGTGGATGAAAGAGGGTTTTATGTTAAAATAGTATGCAATAAAGGAGAAAGGGTGGCTGCTTCATTGTACAAGTCTCTTGAATCTTTGAAAGATTTCAATGTTCAGAATTCAAATTTGGCCACTGTTTCTGATGGTTTTCTATTTACATTTTCATTGAATGTGAAAGACTCTGGACCAGAAATCAACCTGCCAAATTTAAAGCTATGGGTGATTAGTGCTTTTCTAAACCAAGGCTTTGAATTCATACCTTCTTTTCACGCTTGA
Protein sequence

>MsG0080048284.01.T01

MQEKNAADKSNFPGQLNMSDVAFGFSYKATTSVDIKPKPKNDISETLVYARRRQGRMNLQFSAYRNQLKKAYGQVDYLKHLACTYVSDEAKGEIRVENDGDNYSSPATTTTSITTTTTSVDTKPKSKNDRSKTLVSERRRRSRMKDKLYALRSLVPNITKMDKASIIGDAVSYMHELQLQAKKLKAEVAGLEASLAVSKTHQGSIENPKKIQFTNNNASICKKIVQIDMFQVDERGFYVKIVCNKGERVAASLYKSLESLKDFNVQNSNLATVSDGFLFTFSLNVKDSGPEINLPNLKLWVISAFLNQGFEFIPSFHA*