Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020709.01.T01 | XP_003606331.2 | 92.966 | 327 | 21 | 1 | 1 | 327 | 11 | 335 | 0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020709.01.T01 | Q0V7X4 | 51.212 | 330 | 129 | 11 | 8 | 325 | 8 | 317 | 2.13E-93 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020709.01.T01 | G7JN98 | 92.966 | 327 | 21 | 1 | 1 | 327 | 11 | 335 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048284.01 | MsG0480020709.01 | 0.811903 | 5.546377e-51 | 3.475672e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020709.01.T01 | MTR_4g057270 | 92.966 | 327 | 21 | 1 | 1 | 327 | 11 | 335 | 0.0 | 597 |
| MsG0480020709.01.T01 | MTR_2g084280 | 64.486 | 321 | 90 | 9 | 13 | 325 | 9 | 313 | 1.92e-132 | 379 |
| MsG0480020709.01.T01 | MTR_8g064700 | 32.065 | 184 | 118 | 5 | 132 | 311 | 235 | 415 | 1.27e-19 | 89.4 |
| MsG0480020709.01.T01 | MTR_3g030700 | 29.897 | 194 | 129 | 4 | 126 | 314 | 181 | 372 | 8.66e-18 | 83.6 |
| MsG0480020709.01.T01 | MTR_3g104100 | 33.133 | 166 | 92 | 6 | 140 | 294 | 194 | 351 | 2.87e-17 | 82.0 |
| MsG0480020709.01.T01 | MTR_2g038040 | 32.867 | 143 | 84 | 1 | 140 | 270 | 51 | 193 | 9.22e-17 | 79.0 |
| MsG0480020709.01.T01 | MTR_8g067280 | 31.429 | 175 | 104 | 5 | 134 | 294 | 452 | 624 | 2.28e-16 | 80.1 |
| MsG0480020709.01.T01 | MTR_1g112680 | 31.034 | 145 | 73 | 3 | 135 | 252 | 311 | 455 | 4.61e-16 | 79.3 |
| MsG0480020709.01.T01 | MTR_3g498695 | 36.441 | 118 | 70 | 1 | 95 | 207 | 247 | 364 | 3.67e-15 | 76.3 |
| MsG0480020709.01.T01 | MTR_3g498695 | 36.441 | 118 | 70 | 1 | 95 | 207 | 247 | 364 | 3.67e-15 | 76.3 |
| MsG0480020709.01.T01 | MTR_2g081040 | 33.125 | 160 | 88 | 7 | 140 | 286 | 176 | 329 | 4.07e-15 | 75.5 |
| MsG0480020709.01.T01 | MTR_5g030430 | 31.126 | 151 | 91 | 4 | 145 | 284 | 497 | 645 | 5.70e-15 | 76.3 |
| MsG0480020709.01.T01 | MTR_4g091910 | 32.903 | 155 | 93 | 5 | 140 | 292 | 46 | 191 | 7.87e-15 | 72.8 |
| MsG0480020709.01.T01 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 140 | 197 | 285 | 342 | 1.95e-13 | 71.2 |
| MsG0480020709.01.T01 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 140 | 197 | 285 | 342 | 1.99e-13 | 71.2 |
| MsG0480020709.01.T01 | MTR_8g027495 | 51.923 | 52 | 25 | 0 | 145 | 196 | 462 | 513 | 3.53e-13 | 70.5 |
| MsG0480020709.01.T01 | MTR_7g117670 | 51.923 | 52 | 25 | 0 | 145 | 196 | 406 | 457 | 6.44e-13 | 69.7 |
| MsG0480020709.01.T01 | MTR_8g024790 | 37.000 | 100 | 54 | 2 | 104 | 195 | 247 | 345 | 3.13e-12 | 67.4 |
| MsG0480020709.01.T01 | MTR_4g097950 | 27.737 | 137 | 85 | 3 | 143 | 269 | 72 | 204 | 4.51e-12 | 65.5 |
| MsG0480020709.01.T01 | MTR_8g024770 | 36.000 | 100 | 58 | 1 | 101 | 194 | 233 | 332 | 1.64e-11 | 65.1 |
| MsG0480020709.01.T01 | MTR_7g096350 | 43.939 | 66 | 34 | 1 | 134 | 196 | 345 | 410 | 3.94e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020709.01.T01 | AT2G28160 | 51.212 | 330 | 129 | 11 | 8 | 325 | 8 | 317 | 2.17e-94 | 283 |
| MsG0480020709.01.T01 | AT2G28160 | 50.309 | 324 | 129 | 11 | 8 | 319 | 8 | 311 | 4.50e-90 | 272 |
| MsG0480020709.01.T01 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 54 | 208 | 7.46e-24 | 97.8 |
| MsG0480020709.01.T01 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 53 | 207 | 8.06e-24 | 97.8 |
| MsG0480020709.01.T01 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 54 | 208 | 8.44e-24 | 97.8 |
| MsG0480020709.01.T01 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 53 | 207 | 1.31e-23 | 97.8 |
| MsG0480020709.01.T01 | AT5G57150 | 40.127 | 157 | 84 | 4 | 140 | 288 | 54 | 208 | 3.96e-23 | 97.1 |
| MsG0480020709.01.T01 | AT2G16910 | 35.404 | 161 | 82 | 2 | 139 | 278 | 312 | 471 | 1.82e-21 | 95.5 |
| MsG0480020709.01.T01 | AT4G29930 | 35.664 | 143 | 83 | 3 | 140 | 281 | 53 | 187 | 1.87e-20 | 89.0 |
| MsG0480020709.01.T01 | AT4G29930 | 34.395 | 157 | 89 | 3 | 140 | 294 | 53 | 197 | 1.10e-19 | 86.7 |
| MsG0480020709.01.T01 | AT4G29930 | 35.211 | 142 | 82 | 3 | 140 | 281 | 53 | 184 | 1.94e-19 | 85.9 |
| MsG0480020709.01.T01 | AT4G29930 | 30.857 | 175 | 100 | 3 | 140 | 294 | 53 | 226 | 1.27e-18 | 84.3 |
| MsG0480020709.01.T01 | AT4G29930 | 30.857 | 175 | 100 | 3 | 140 | 294 | 53 | 226 | 1.27e-18 | 84.3 |
| MsG0480020709.01.T01 | AT4G29930 | 31.481 | 162 | 90 | 3 | 140 | 281 | 53 | 213 | 1.72e-18 | 84.0 |
| MsG0480020709.01.T01 | AT4G29930 | 55.556 | 63 | 28 | 0 | 140 | 202 | 53 | 115 | 1.06e-16 | 77.4 |
| MsG0480020709.01.T01 | AT4G17880 | 30.769 | 156 | 99 | 4 | 134 | 284 | 406 | 557 | 1.29e-15 | 78.2 |
| MsG0480020709.01.T01 | AT2G46510 | 48.101 | 79 | 38 | 1 | 134 | 209 | 385 | 463 | 3.58e-15 | 76.6 |
| MsG0480020709.01.T01 | AT1G01260 | 32.164 | 171 | 84 | 5 | 128 | 290 | 412 | 558 | 4.53e-15 | 76.3 |
| MsG0480020709.01.T01 | AT1G01260 | 32.164 | 171 | 84 | 5 | 128 | 290 | 412 | 558 | 4.53e-15 | 76.3 |
| MsG0480020709.01.T01 | AT1G01260 | 32.164 | 171 | 84 | 5 | 128 | 290 | 412 | 558 | 4.53e-15 | 76.3 |
| MsG0480020709.01.T01 | AT1G10610 | 35.000 | 120 | 75 | 2 | 135 | 251 | 161 | 280 | 5.82e-15 | 75.1 |
| MsG0480020709.01.T01 | AT1G10610 | 35.000 | 120 | 75 | 2 | 135 | 251 | 228 | 347 | 7.49e-15 | 75.1 |
| MsG0480020709.01.T01 | AT1G10610 | 35.000 | 120 | 75 | 2 | 135 | 251 | 258 | 377 | 9.57e-15 | 75.1 |
| MsG0480020709.01.T01 | AT5G46760 | 29.167 | 144 | 96 | 4 | 145 | 284 | 419 | 560 | 3.08e-14 | 73.9 |
| MsG0480020709.01.T01 | AT1G12860 | 51.724 | 58 | 28 | 0 | 140 | 197 | 266 | 323 | 1.59e-13 | 71.2 |
| MsG0480020709.01.T01 | AT1G12860 | 51.724 | 58 | 28 | 0 | 140 | 197 | 266 | 323 | 1.67e-13 | 71.2 |
| MsG0480020709.01.T01 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.98e-13 | 71.2 |
| MsG0480020709.01.T01 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.98e-13 | 71.2 |
| MsG0480020709.01.T01 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.98e-13 | 71.2 |
| MsG0480020709.01.T01 | AT3G26744 | 38.053 | 113 | 59 | 1 | 96 | 197 | 251 | 363 | 1.98e-13 | 71.2 |
| MsG0480020709.01.T01 | AT1G32640 | 30.573 | 157 | 99 | 5 | 134 | 284 | 442 | 594 | 3.22e-13 | 70.9 |
| MsG0480020709.01.T01 | AT4G21330 | 25.000 | 192 | 135 | 3 | 107 | 296 | 4 | 188 | 1.06e-12 | 66.6 |
| MsG0480020709.01.T01 | AT5G10570 | 34.000 | 150 | 71 | 4 | 129 | 269 | 134 | 264 | 2.06e-11 | 64.3 |
| MsG0480020709.01.T01 | AT5G46830 | 28.662 | 157 | 94 | 4 | 145 | 295 | 347 | 491 | 2.60e-11 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATATCCATTGTCTATTT+TGG | 0.118253 | 4:+46765202 | None:intergenic |
| CAATGTTCAGAATTCAAATT+TGG | 0.160318 | 4:-46763907 | MsG0480020709.01.T01:CDS |
| TAACTATCTTTATATATTAA+TGG | 0.164815 | 4:-46763054 | MsG0480020709.01.T01:three_prime_UTR |
| AAATTTGGCAGGTTGATTTC+TGG | 0.184628 | 4:+46763547 | None:intergenic |
| TAATGTTGTAATTCTAATTA+AGG | 0.187286 | 4:-46763437 | MsG0480020709.01.T01:three_prime_UTR |
| AACCTCAGCCTTAAGCTTCT+TGG | 0.225200 | 4:+46764263 | None:intergenic |
| CAAAACTTTGATTCATTATA+AGG | 0.232350 | 4:+46765044 | None:intergenic |
| AATTGATCCTTGATGAGTTT+TGG | 0.235753 | 4:+46764212 | None:intergenic |
| ATCACCCATAGCTTTAAATT+TGG | 0.237169 | 4:+46763532 | None:intergenic |
| CTAATTAAGGTTGTATTAGA+TGG | 0.268303 | 4:-46763424 | MsG0480020709.01.T01:three_prime_UTR |
| TAATGGATCATCAAATTATA+AGG | 0.278808 | 4:-46763037 | MsG0480020709.01.T01:three_prime_UTR |
| TGTTAAAATAGTATGCAATA+AGG | 0.282684 | 4:-46763982 | MsG0480020709.01.T01:CDS |
| AAGTGTACCTTAGTTATATT+CGG | 0.298452 | 4:+46764698 | None:intergenic |
| GCTTTACGCATTGCGTTCTT+TGG | 0.305835 | 4:-46764723 | MsG0480020709.01.T01:CDS |
| AAGCTTAAGGCTGAGGTTGC+AGG | 0.310327 | 4:-46764258 | MsG0480020709.01.T01:CDS |
| TTGATGAATTGATCAAAGTT+TGG | 0.317687 | 4:+46765121 | None:intergenic |
| TATCAATAGAGTTACATATA+GGG | 0.328796 | 4:+46763075 | None:intergenic |
| CCGATTCGAGCCATTATTAT+CGG | 0.349022 | 4:-46763166 | MsG0480020709.01.T01:three_prime_UTR |
| TCCTCAGATTATGCGTGTTT+CGG | 0.368953 | 4:+46763256 | None:intergenic |
| TTATCTATGTTGTGATCAAA+TGG | 0.384556 | 4:+46764989 | None:intergenic |
| TTGCTATTGGCCGATAATAA+TGG | 0.386062 | 4:+46763156 | None:intergenic |
| TTATCAATAGAGTTACATAT+AGG | 0.394645 | 4:+46763074 | None:intergenic |
| ACCTGCCAAATTTAAAGCTA+TGG | 0.396521 | 4:-46763537 | MsG0480020709.01.T01:CDS |
| TTAATGTTTGCAAGTGTCTC+TGG | 0.404175 | 4:+46765178 | None:intergenic |
| CGTAAAGCTTATCCTTCATT+CGG | 0.412112 | 4:+46764738 | None:intergenic |
| ATTATATGTATAGATGGATA+AGG | 0.414631 | 4:-46764337 | MsG0480020709.01.T01:intron |
| GTTAAAATAGTATGCAATAA+GGG | 0.416472 | 4:-46763981 | MsG0480020709.01.T01:CDS |
| ATGGATAAGGCTTCTATCAT+TGG | 0.423797 | 4:-46764324 | MsG0480020709.01.T01:CDS |
| CCCATAGCTTTAAATTTGGC+AGG | 0.425488 | 4:+46763536 | None:intergenic |
| TGGTTGAAAGTTGGAACATA+TGG | 0.428152 | 4:+46765222 | None:intergenic |
| CAATTCATCAATTTGATTCG+TGG | 0.448543 | 4:-46765109 | MsG0480020709.01.T01:CDS |
| AATTCATCAATTTGATTCGT+GGG | 0.449395 | 4:-46765108 | MsG0480020709.01.T01:CDS |
| TTTGATCCTACTTCTTCACT+TGG | 0.449750 | 4:-46764950 | MsG0480020709.01.T01:CDS |
| AAGGTATGAATTCAAAGCCT+TGG | 0.451801 | 4:+46763494 | None:intergenic |
| TGAAAATAGGTGAAAGACTC+TGG | 0.451976 | 4:-46763571 | MsG0480020709.01.T01:intron |
| TAGTATGCAATAAGGGAGAA+AGG | 0.463194 | 4:-46763974 | MsG0480020709.01.T01:CDS |
| AGTGTACCTTAGTTATATTC+GGG | 0.463592 | 4:+46764699 | None:intergenic |
| AATATGCAAGAAAATTGTCC+AGG | 0.466755 | 4:-46764148 | MsG0480020709.01.T01:intron |
| GATTATGCGTGTTTCGGTGT+TGG | 0.467110 | 4:+46763262 | None:intergenic |
| CTTTGGTTTCTGAGAGGAGG+AGG | 0.467532 | 4:-46764766 | MsG0480020709.01.T01:CDS |
| AAATGATAGATCCAAGACTT+TGG | 0.473297 | 4:-46764783 | MsG0480020709.01.T01:CDS |
| CATCAATTTGATTCGTGGGG+AGG | 0.485954 | 4:-46765104 | MsG0480020709.01.T01:CDS |
| TATCTATGTTGTGATCAAAT+GGG | 0.486497 | 4:+46764990 | None:intergenic |
| CCTCTCAGAAACCAAAGTCT+TGG | 0.490550 | 4:+46764772 | None:intergenic |
| TTGTGATCAAATGGGTTTGA+AGG | 0.490633 | 4:+46764998 | None:intergenic |
| ATTCAACTTACTAACAAAAG+TGG | 0.491348 | 4:-46764174 | MsG0480020709.01.T01:CDS |
| ATCACAAGCCAAGAAGCTTA+AGG | 0.495865 | 4:-46764271 | MsG0480020709.01.T01:CDS |
| TTTGGTCCCGAATATAACTA+AGG | 0.495980 | 4:-46764705 | MsG0480020709.01.T01:intron |
| ATGTGTCAAGCGTGAAAAGA+AGG | 0.518768 | 4:+46763475 | None:intergenic |
| ATGTTTCAAGTGGATGAAAG+AGG | 0.519776 | 4:-46764011 | MsG0480020709.01.T01:CDS |
| AGTATGCAATAAGGGAGAAA+GGG | 0.525003 | 4:-46763973 | MsG0480020709.01.T01:CDS |
| CCTGCCAAATTTAAAGCTAT+GGG | 0.525800 | 4:-46763536 | MsG0480020709.01.T01:CDS |
| AAAGAACCAAGTGAAGAAGT+AGG | 0.527298 | 4:+46764944 | None:intergenic |
| GAGGAGGCGAAGCCGAATGA+AGG | 0.530731 | 4:-46764750 | MsG0480020709.01.T01:CDS |
| TGTTTCAAGTGGATGAAAGA+GGG | 0.533128 | 4:-46764010 | MsG0480020709.01.T01:CDS |
| GACAGTGTTCGTATCATGTC+CGG | 0.535910 | 4:+46763361 | None:intergenic |
| CCGATAATAATGGCTCGAAT+CGG | 0.537633 | 4:+46763166 | None:intergenic |
| ATCACCACTTGTAGTTGTTG+TGG | 0.544215 | 4:+46764823 | None:intergenic |
| AGCCAAGAAGCTTAAGGCTG+AGG | 0.549244 | 4:-46764265 | MsG0480020709.01.T01:CDS |
| AATTTGGCCACTGTTTGTGA+TGG | 0.556068 | 4:-46763891 | MsG0480020709.01.T01:CDS |
| TGAAGTACGGATACGGACAC+CGG | 0.557544 | 4:-46763380 | MsG0480020709.01.T01:three_prime_UTR |
| GAGACGTGAACTTTGAAGTA+CGG | 0.562466 | 4:-46763393 | MsG0480020709.01.T01:three_prime_UTR |
| AGACTTTGGTTTCTGAGAGG+AGG | 0.567716 | 4:-46764769 | MsG0480020709.01.T01:CDS |
| TGTTGTTGTTGCTGCAGGAG+AGG | 0.577155 | 4:+46764859 | None:intergenic |
| GTAGATTGATATGTTTCAAG+TGG | 0.578490 | 4:-46764021 | MsG0480020709.01.T01:intron |
| GCAGTGTCCAAAACTCATCA+AGG | 0.579680 | 4:-46764219 | MsG0480020709.01.T01:CDS |
| CTTTCAACCAAAATAGACAA+TGG | 0.586952 | 4:-46765209 | MsG0480020709.01.T01:exon |
| ATGGGTTTGAAGGAAATGAA+AGG | 0.592796 | 4:+46765008 | None:intergenic |
| TGAACTTTGAAGTACGGATA+CGG | 0.596177 | 4:-46763387 | MsG0480020709.01.T01:three_prime_UTR |
| CCAAGACTTTGGTTTCTGAG+AGG | 0.603254 | 4:-46764772 | MsG0480020709.01.T01:CDS |
| GAATTAAGAGTAGAAAATGA+TGG | 0.612562 | 4:-46764893 | MsG0480020709.01.T01:CDS |
| ATTACCACAACAACTACAAG+TGG | 0.612581 | 4:-46764827 | MsG0480020709.01.T01:CDS |
| TTATCGGCCAATAGCAATGT+CGG | 0.613212 | 4:-46763150 | MsG0480020709.01.T01:three_prime_UTR |
| TGTAATTATATGTGTCGTGT+CGG | 0.620351 | 4:-46763304 | MsG0480020709.01.T01:three_prime_UTR |
| ATTCATCAATTTGATTCGTG+GGG | 0.631333 | 4:-46765107 | MsG0480020709.01.T01:CDS |
| ACCGAAACACGCATAATCTG+AGG | 0.644213 | 4:-46763257 | MsG0480020709.01.T01:three_prime_UTR |
| TAGAAAACCATCACAAACAG+TGG | 0.644737 | 4:+46763884 | None:intergenic |
| ATGCAATAAGGGAGAAAGGG+TGG | 0.649433 | 4:-46763970 | MsG0480020709.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACTATCTTTATATATTAA+TGG | - | Chr4:46765187-46765206 | MsG0480020709.01.T01:CDS | 10.0% |
| !! | TATTTAATTATATGTATAGA+TGG | - | Chr4:46763898-46763917 | MsG0480020709.01.T01:CDS | 10.0% |
| !! | ATATATTTAACCTTAAATAG+AGG | + | Chr4:46764414-46764433 | None:intergenic | 15.0% |
| !! | TAATGTTGTAATTCTAATTA+AGG | - | Chr4:46764804-46764823 | MsG0480020709.01.T01:CDS | 15.0% |
| !! | TATATTTAACCTTAAATAGA+GGG | + | Chr4:46764413-46764432 | None:intergenic | 15.0% |
| !! | ACTAAAAAAACCTAAATGTT+AGG | - | Chr4:46764573-46764592 | MsG0480020709.01.T01:intron | 20.0% |
| !! | ATGTAATTTCATAATACGTA+GGG | - | Chr4:46764531-46764550 | MsG0480020709.01.T01:intron | 20.0% |
| !! | ATTATATGTATAGATGGATA+AGG | - | Chr4:46763904-46763923 | MsG0480020709.01.T01:CDS | 20.0% |
| !! | CAAAACTTTGATTCATTATA+AGG | + | Chr4:46763200-46763219 | None:intergenic | 20.0% |
| !! | CAGATAATGAAATAGAATAA+TGG | + | Chr4:46764619-46764638 | None:intergenic | 20.0% |
| !! | CTAAAAAAACCTAAATGTTA+GGG | - | Chr4:46764574-46764593 | MsG0480020709.01.T01:intron | 20.0% |
| !! | GTTAAAATAGTATGCAATAA+GGG | - | Chr4:46764260-46764279 | MsG0480020709.01.T01:CDS | 20.0% |
| !! | TATCAATAGAGTTACATATA+GGG | + | Chr4:46765169-46765188 | None:intergenic | 20.0% |
| !! | TGTTAAAATAGTATGCAATA+AGG | - | Chr4:46764259-46764278 | MsG0480020709.01.T01:CDS | 20.0% |
| !! | TTATCAATAGAGTTACATAT+AGG | + | Chr4:46765170-46765189 | None:intergenic | 20.0% |
| !!! | AAACAAAATTACATGCTTTT+AGG | - | Chr4:46764499-46764518 | MsG0480020709.01.T01:intron | 20.0% |
| !!! | AGATTTTGAAGTATCTAAAA+TGG | + | Chr4:46763654-46763673 | None:intergenic | 20.0% |
| !!! | CTTCAAAATCTTTTATATTG+TGG | - | Chr4:46763663-46763682 | MsG0480020709.01.T01:intron | 20.0% |
| !!! | TAAATATCCATTGTCTATTT+TGG | + | Chr4:46763042-46763061 | None:intergenic | 20.0% |
| !!! | TAATGGATCATCAAATTATA+AGG | - | Chr4:46765204-46765223 | MsG0480020709.01.T01:exon | 20.0% |
| !!! | TTTTTATTACCCTAACATTT+AGG | + | Chr4:46764586-46764605 | None:intergenic | 20.0% |
| ! | AAGTGTACCTTAGTTATATT+CGG | + | Chr4:46763546-46763565 | None:intergenic | 25.0% |
| ! | AGCAATCTTCATCTTATAAA+CGG | + | Chr4:46763755-46763774 | None:intergenic | 25.0% |
| ! | ATTCAACTTACTAACAAAAG+TGG | - | Chr4:46764067-46764086 | MsG0480020709.01.T01:intron | 25.0% |
| ! | CAATGTTCAGAATTCAAATT+TGG | - | Chr4:46764334-46764353 | MsG0480020709.01.T01:intron | 25.0% |
| ! | CATGTAATTTCATAATACGT+AGG | - | Chr4:46764530-46764549 | MsG0480020709.01.T01:intron | 25.0% |
| ! | CTAATTAAGGTTGTATTAGA+TGG | - | Chr4:46764817-46764836 | MsG0480020709.01.T01:CDS | 25.0% |
| ! | CTATATGTTACTATCCAAAA+TGG | - | Chr4:46763799-46763818 | MsG0480020709.01.T01:intron | 25.0% |
| ! | GAATTAAGAGTAGAAAATGA+TGG | - | Chr4:46763348-46763367 | MsG0480020709.01.T01:three_prime_UTR | 25.0% |
| ! | TATCTATGTTGTGATCAAAT+GGG | + | Chr4:46763254-46763273 | None:intergenic | 25.0% |
| ! | TGATATTTATCAAACAAACC+TGG | + | Chr4:46764114-46764133 | None:intergenic | 25.0% |
| ! | TTATCTATGTTGTGATCAAA+TGG | + | Chr4:46763255-46763274 | None:intergenic | 25.0% |
| ! | TTGATGAATTGATCAAAGTT+TGG | + | Chr4:46763123-46763142 | None:intergenic | 25.0% |
| !! | AATTCATCAATTTGATTCGT+GGG | - | Chr4:46763133-46763152 | MsG0480020709.01.T01:three_prime_UTR | 25.0% |
| !! | ACAATGAATGTTAACCATTT+TGG | + | Chr4:46763816-46763835 | None:intergenic | 25.0% |
| !!! | GTAATTTTGTTTTGTAGAGA+CGG | + | Chr4:46764491-46764510 | None:intergenic | 25.0% |
| !!! | TAGTAAGTTGAATCTTTTTG+TGG | + | Chr4:46764060-46764079 | None:intergenic | 25.0% |
| AAATGATAGATCCAAGACTT+TGG | - | Chr4:46763458-46763477 | MsG0480020709.01.T01:three_prime_UTR | 30.0% | |
| AATACGTAGGGACTAAAAAA+TGG | - | Chr4:46764543-46764562 | MsG0480020709.01.T01:intron | 30.0% | |
| AATATGCAAGAAAATTGTCC+AGG | - | Chr4:46764093-46764112 | MsG0480020709.01.T01:intron | 30.0% | |
| AGCTATATTCCCTCTATTTA+AGG | - | Chr4:46764401-46764420 | MsG0480020709.01.T01:intron | 30.0% | |
| AGTGTACCTTAGTTATATTC+GGG | + | Chr4:46763545-46763564 | None:intergenic | 30.0% | |
| CATGCTTATCATGTGAAAAT+AGG | - | Chr4:46764657-46764676 | MsG0480020709.01.T01:intron | 30.0% | |
| CTTTCAACCAAAATAGACAA+TGG | - | Chr4:46763032-46763051 | MsG0480020709.01.T01:three_prime_UTR | 30.0% | |
| GTAGATTGATATGTTTCAAG+TGG | - | Chr4:46764220-46764239 | MsG0480020709.01.T01:CDS | 30.0% | |
| GTTTGTAACATCTTTGAATG+TGG | - | Chr4:46764191-46764210 | MsG0480020709.01.T01:CDS | 30.0% | |
| TATAACTAAGGTACACTTCT+TGG | - | Chr4:46763548-46763567 | MsG0480020709.01.T01:CDS | 30.0% | |
| TGTAATTATATGTGTCGTGT+CGG | - | Chr4:46764937-46764956 | MsG0480020709.01.T01:CDS | 30.0% | |
| ! | AACATTTTGCCGCAATATAA+AGG | + | Chr4:46763610-46763629 | None:intergenic | 30.0% |
| ! | AATTGATCCTTGATGAGTTT+TGG | + | Chr4:46764032-46764051 | None:intergenic | 30.0% |
| ! | ATCTAAAATGGTATCACAAC+TGG | + | Chr4:46763642-46763661 | None:intergenic | 30.0% |
| ! | ATTCATCAATTTGATTCGTG+GGG | - | Chr4:46763134-46763153 | MsG0480020709.01.T01:three_prime_UTR | 30.0% |
| ! | CAATTCATCAATTTGATTCG+TGG | - | Chr4:46763132-46763151 | MsG0480020709.01.T01:three_prime_UTR | 30.0% |
| ! | TTTAAATTGTTGTTGCGTTG+CGG | - | Chr4:46763572-46763591 | MsG0480020709.01.T01:intron | 30.0% |
| ! | TTTTCTAAACAATAGGCAAG+TGG | - | Chr4:46765117-46765136 | MsG0480020709.01.T01:CDS | 30.0% |
| !! | ATCACCCATAGCTTTAAATT+TGG | + | Chr4:46764712-46764731 | None:intergenic | 30.0% |
| !! | GATCTATCATTTTTCGACTT+TGG | + | Chr4:46763450-46763469 | None:intergenic | 30.0% |
| !! | TCGGTGTTTTTCTAAACAAT+AGG | - | Chr4:46765110-46765129 | MsG0480020709.01.T01:CDS | 30.0% |
| !!! | TGTCTATTTTGGTTGAAAGT+TGG | + | Chr4:46763031-46763050 | None:intergenic | 30.0% |
| AAAAACACCGACATTGCTAT+TGG | + | Chr4:46765101-46765120 | None:intergenic | 35.0% | |
| AAAGAACCAAGTGAAGAAGT+AGG | + | Chr4:46763300-46763319 | None:intergenic | 35.0% | |
| AAGGTATGAATTCAAAGCCT+TGG | + | Chr4:46764750-46764769 | None:intergenic | 35.0% | |
| AGTATGCAATAAGGGAGAAA+GGG | - | Chr4:46764268-46764287 | MsG0480020709.01.T01:CDS | 35.0% | |
| ATGGATAAGGCTTCTATCAT+TGG | - | Chr4:46763917-46763936 | MsG0480020709.01.T01:CDS | 35.0% | |
| ATGGGTTTGAAGGAAATGAA+AGG | + | Chr4:46763236-46763255 | None:intergenic | 35.0% | |
| ATTACCACAACAACTACAAG+TGG | - | Chr4:46763414-46763433 | MsG0480020709.01.T01:three_prime_UTR | 35.0% | |
| CACTGCAAACCTTTATATTG+CGG | - | Chr4:46763598-46763617 | MsG0480020709.01.T01:intron | 35.0% | |
| CGTAAAGCTTATCCTTCATT+CGG | + | Chr4:46763506-46763525 | None:intergenic | 35.0% | |
| GTGGTAGTATGTGTAAAAAG+AGG | - | Chr4:46765136-46765155 | MsG0480020709.01.T01:CDS | 35.0% | |
| TAGAAAACCATCACAAACAG+TGG | + | Chr4:46764360-46764379 | None:intergenic | 35.0% | |
| TAGTATGCAATAAGGGAGAA+AGG | - | Chr4:46764267-46764286 | MsG0480020709.01.T01:CDS | 35.0% | |
| TGAAAATAGGTGAAAGACTC+TGG | - | Chr4:46764670-46764689 | MsG0480020709.01.T01:intron | 35.0% | |
| TTAATGTTTGCAAGTGTCTC+TGG | + | Chr4:46763066-46763085 | None:intergenic | 35.0% | |
| TTTGATCCTACTTCTTCACT+TGG | - | Chr4:46763291-46763310 | MsG0480020709.01.T01:three_prime_UTR | 35.0% | |
| TTTGGTCCCGAATATAACTA+AGG | - | Chr4:46763536-46763555 | MsG0480020709.01.T01:CDS | 35.0% | |
| ! | ACCTGCCAAATTTAAAGCTA+TGG | - | Chr4:46764704-46764723 | MsG0480020709.01.T01:intron | 35.0% |
| ! | ATCAGTGCTTTTCTAAACCA+AGG | - | Chr4:46764730-46764749 | MsG0480020709.01.T01:CDS | 35.0% |
| ! | ATGTTTCAAGTGGATGAAAG+AGG | - | Chr4:46764230-46764249 | MsG0480020709.01.T01:CDS | 35.0% |
| ! | CCTGCCAAATTTAAAGCTAT+GGG | - | Chr4:46764705-46764724 | MsG0480020709.01.T01:intron | 35.0% |
| ! | TGTTTCAAGTGGATGAAAGA+GGG | - | Chr4:46764231-46764250 | MsG0480020709.01.T01:CDS | 35.0% |
| ! | TTGCTATTGGCCGATAATAA+TGG | + | Chr4:46765088-46765107 | None:intergenic | 35.0% |
| ! | TTGTGATCAAATGGGTTTGA+AGG | + | Chr4:46763246-46763265 | None:intergenic | 35.0% |
| !! | AAATTTGGCAGGTTGATTTC+TGG | + | Chr4:46764697-46764716 | None:intergenic | 35.0% |
| !! | TGAACTTTGAAGTACGGATA+CGG | - | Chr4:46764854-46764873 | MsG0480020709.01.T01:CDS | 35.0% |
| !!! | GGTTCTTTCTCTTGTTTTGA+TGG | - | Chr4:46763312-46763331 | MsG0480020709.01.T01:three_prime_UTR | 35.0% |
| !!! | TGTTTTGATGGAGAAGCTAA+GGG | - | Chr4:46763324-46763343 | MsG0480020709.01.T01:three_prime_UTR | 35.0% |
| !!! | TTGTTTTGATGGAGAAGCTA+AGG | - | Chr4:46763323-46763342 | MsG0480020709.01.T01:three_prime_UTR | 35.0% |
| AATTTGGCCACTGTTTGTGA+TGG | - | Chr4:46764350-46764369 | MsG0480020709.01.T01:intron | 40.0% | |
| ATCACAAGCCAAGAAGCTTA+AGG | - | Chr4:46763970-46763989 | MsG0480020709.01.T01:CDS | 40.0% | |
| ATCACCACTTGTAGTTGTTG+TGG | + | Chr4:46763421-46763440 | None:intergenic | 40.0% | |
| ATGTGTCAAGCGTGAAAAGA+AGG | + | Chr4:46764769-46764788 | None:intergenic | 40.0% | |
| CCGATAATAATGGCTCGAAT+CGG | + | Chr4:46765078-46765097 | None:intergenic | 40.0% | |
| GTAACATATAGCCTGCATAG+TGG | + | Chr4:46763790-46763809 | None:intergenic | 40.0% | |
| TCCTCAGATTATGCGTGTTT+CGG | + | Chr4:46764988-46765007 | None:intergenic | 40.0% | |
| TTATCGGCCAATAGCAATGT+CGG | - | Chr4:46765091-46765110 | MsG0480020709.01.T01:CDS | 40.0% | |
| ! | CCGATTCGAGCCATTATTAT+CGG | - | Chr4:46765075-46765094 | MsG0480020709.01.T01:CDS | 40.0% |
| ! | GTTTTGTAGAGACGGAAAAG+TGG | + | Chr4:46764483-46764502 | None:intergenic | 40.0% |
| ! | TTTTGATGGAGAAGCTAAGG+GGG | - | Chr4:46763326-46763345 | MsG0480020709.01.T01:three_prime_UTR | 40.0% |
| !! | CCCATAGCTTTAAATTTGGC+AGG | + | Chr4:46764708-46764727 | None:intergenic | 40.0% |
| !! | GAGACGTGAACTTTGAAGTA+CGG | - | Chr4:46764848-46764867 | MsG0480020709.01.T01:CDS | 40.0% |
| !! | GTTTTGATGGAGAAGCTAAG+GGG | - | Chr4:46763325-46763344 | MsG0480020709.01.T01:three_prime_UTR | 40.0% |
| AACCTCAGCCTTAAGCTTCT+TGG | + | Chr4:46763981-46764000 | None:intergenic | 45.0% | |
| ACCGAAACACGCATAATCTG+AGG | - | Chr4:46764984-46765003 | MsG0480020709.01.T01:CDS | 45.0% | |
| ATGCAATAAGGGAGAAAGGG+TGG | - | Chr4:46764271-46764290 | MsG0480020709.01.T01:CDS | 45.0% | |
| CCTCTCAGAAACCAAAGTCT+TGG | + | Chr4:46763472-46763491 | None:intergenic | 45.0% | |
| CGCACTTATAACCACTATGC+AGG | - | Chr4:46763776-46763795 | MsG0480020709.01.T01:intron | 45.0% | |
| GACAGTGTTCGTATCATGTC+CGG | + | Chr4:46764883-46764902 | None:intergenic | 45.0% | |
| GCAGTGTCCAAAACTCATCA+AGG | - | Chr4:46764022-46764041 | MsG0480020709.01.T01:intron | 45.0% | |
| GCTTTACGCATTGCGTTCTT+TGG | - | Chr4:46763518-46763537 | MsG0480020709.01.T01:CDS | 45.0% | |
| ! | AGACTTTGGTTTCTGAGAGG+AGG | - | Chr4:46763472-46763491 | MsG0480020709.01.T01:exon | 45.0% |
| ! | CATCAATTTGATTCGTGGGG+AGG | - | Chr4:46763137-46763156 | MsG0480020709.01.T01:three_prime_UTR | 45.0% |
| ! | CCAAGACTTTGGTTTCTGAG+AGG | - | Chr4:46763469-46763488 | MsG0480020709.01.T01:exon | 45.0% |
| ! | GATTATGCGTGTTTCGGTGT+TGG | + | Chr4:46764982-46765001 | None:intergenic | 45.0% |
| ! | GTTGTTGTTGTTGTTGCTGC+AGG | + | Chr4:46763390-46763409 | None:intergenic | 45.0% |
| AAGCTTAAGGCTGAGGTTGC+AGG | - | Chr4:46763983-46764002 | MsG0480020709.01.T01:CDS | 50.0% | |
| AGCCAAGAAGCTTAAGGCTG+AGG | - | Chr4:46763976-46763995 | MsG0480020709.01.T01:CDS | 50.0% | |
| TGAAGTACGGATACGGACAC+CGG | - | Chr4:46764861-46764880 | MsG0480020709.01.T01:CDS | 50.0% | |
| ! | CTTTGGTTTCTGAGAGGAGG+AGG | - | Chr4:46763475-46763494 | MsG0480020709.01.T01:exon | 50.0% |
| ! | TGTTGTTGTTGCTGCAGGAG+AGG | + | Chr4:46763385-46763404 | None:intergenic | 50.0% |
| GAGGAGGCGAAGCCGAATGA+AGG | - | Chr4:46763491-46763510 | MsG0480020709.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 46763021 | 46765242 | 46763021 | ID=MsG0480020709.01;Name=MsG0480020709.01 |
| Chr4 | mRNA | 46763021 | 46765242 | 46763021 | ID=MsG0480020709.01.T01;Parent=MsG0480020709.01;Name=MsG0480020709.01.T01;_AED=0.40;_eAED=0.40;_QI=30|1|1|1|1|1|4|459|327 |
| Chr4 | exon | 46763021 | 46763584 | 46763021 | ID=MsG0480020709.01.T01:exon:2251;Parent=MsG0480020709.01.T01 |
| Chr4 | exon | 46763866 | 46764039 | 46763866 | ID=MsG0480020709.01.T01:exon:2250;Parent=MsG0480020709.01.T01 |
| Chr4 | exon | 46764149 | 46764346 | 46764149 | ID=MsG0480020709.01.T01:exon:2249;Parent=MsG0480020709.01.T01 |
| Chr4 | exon | 46764706 | 46765242 | 46764706 | ID=MsG0480020709.01.T01:exon:2248;Parent=MsG0480020709.01.T01 |
| Chr4 | five_prime_UTR | 46765213 | 46765242 | 46765213 | ID=MsG0480020709.01.T01:five_prime_utr;Parent=MsG0480020709.01.T01 |
| Chr4 | CDS | 46764706 | 46765212 | 46764706 | ID=MsG0480020709.01.T01:cds;Parent=MsG0480020709.01.T01 |
| Chr4 | CDS | 46764149 | 46764346 | 46764149 | ID=MsG0480020709.01.T01:cds;Parent=MsG0480020709.01.T01 |
| Chr4 | CDS | 46763866 | 46764039 | 46763866 | ID=MsG0480020709.01.T01:cds;Parent=MsG0480020709.01.T01 |
| Chr4 | CDS | 46763480 | 46763584 | 46763480 | ID=MsG0480020709.01.T01:cds;Parent=MsG0480020709.01.T01 |
| Chr4 | three_prime_UTR | 46763021 | 46763479 | 46763021 | ID=MsG0480020709.01.T01:three_prime_utr;Parent=MsG0480020709.01.T01 |
| Gene Sequence |
| Protein sequence |
