AlfalfaGEDB | MsG0080048505.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048505.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069 PF08263

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048505.01.T01	XP_013466626.1	94.187	929	52	2	1	928	1	928	0	1712

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048505.01.T01	P43298	56.156	926	364	16	30	928	32	942	0	983

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048505.01.T01	A0A072VFS8	94.187	929	52	2	1	928	1	928	0.0	1712

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048505.01	MsG0080048845.01	0.842817	2.050612e-58	3.146086e-55
MsG0080048505.01	MsG0080048969.01	0.829361	5.374412e-55	5.488798e-52
MsG0080048505.01	MsG0080049078.01	0.811659	6.269432e-51	3.903226e-48
MsG0080048505.01	MsG0080049130.01	0.828507	8.651357e-55	8.616648e-52
MsG0080048505.01	MsG0180000017.01	0.844726	6.322176e-59	1.030004e-55
MsG0080048505.01	MsG0180000843.01	0.831044	2.085867e-55	2.237226e-52
MsG0080048505.01	MsG0180001523.01	0.819047	1.425814e-52	1.085424e-49
MsG0080048505.01	MsG0180002891.01	0.815079	1.110963e-51	7.584301e-49
MsG0080048505.01	MsG0180003274.01	0.800485	1.409636e-48	6.571495e-46
MsG0080048505.01	MsG0180003316.01	0.821331	4.274329e-53	3.467111e-50

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PPI

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Gene1	Gene2	Type
MsG0080048505.01	MsG0380016153.01	PPI
MsG0780039358.01	MsG0080048505.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048505.01.T01	MTR_1g033010	94.187	929	52	2	1	928	1	928	0.0	1712
MsG0080048505.01.T01	MTR_1g033000	81.136	933	171	3	1	928	1	933	0.0	1519
MsG0080048505.01.T01	MTR_1g033040	79.701	936	182	2	1	928	1	936	0.0	1454
MsG0080048505.01.T01	MTR_8g106100	61.455	921	330	11	1	909	6	913	0.0	1105
MsG0080048505.01.T01	MTR_5g077430	56.448	946	382	13	5	928	8	945	0.0	985
MsG0080048505.01.T01	MTR_3g084510	48.832	942	433	14	11	928	17	933	0.0	827
MsG0080048505.01.T01	MTR_8g083240	47.040	929	445	18	19	928	16	916	0.0	749
MsG0080048505.01.T01	MTR_7g106210	43.629	926	455	21	44	928	43	942	0.0	697
MsG0080048505.01.T01	MTR_2g087230	41.883	924	481	15	44	928	47	953	0.0	643
MsG0080048505.01.T01	MTR_4g051605	55.501	409	169	2	524	928	562	961	1.08e-148	464

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048505.01.T01	AT1G66150	56.156	926	364	16	30	928	32	942	0.0	983
MsG0080048505.01.T01	AT2G01820	54.624	930	380	15	26	928	29	943	0.0	953
MsG0080048505.01.T01	AT1G24650	51.425	877	385	16	11	877	8	853	0.0	813
MsG0080048505.01.T01	AT3G23750	46.746	922	417	17	45	928	43	928	0.0	777
MsG0080048505.01.T01	AT5G07280	31.851	832	444	26	73	855	435	1192	4.21e-81	286
MsG0080048505.01.T01	AT5G07280	25.926	432	223	11	52	431	55	441	3.12e-20	97.4
MsG0080048505.01.T01	AT5G07280	28.758	306	167	14	62	324	520	817	1.37e-16	85.5
MsG0080048505.01.T01	AT3G13380	29.271	837	500	21	62	855	351	1138	6.18e-79	279
MsG0080048505.01.T01	AT3G13380	28.842	423	255	17	34	431	42	443	4.13e-18	90.5
MsG0080048505.01.T01	AT3G13380	28.058	417	198	16	88	431	177	564	2.43e-17	88.2

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Find 217 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGAAGATATACTAC+CGG	0.620315	contig338end:+61591	None:intergenic
AAAATAAGTGTTGCAGCAGC+CGG	0.505879	contig338end:-61154	MsG0080048505.01.T01:CDS
AAACAATTCTTAAGACTAGA+AGG	0.392101	contig338end:+62282	None:intergenic
AAACCATCAAATATCTTGCT+TGG	0.450600	contig338end:-60617	MsG0080048505.01.T01:CDS
AAAGATTGTTGCAAATGGAA+GGG	0.615983	contig338end:-62582	MsG0080048505.01.T01:CDS
AAAGGTCATCGATCCAGCAA+TGG	0.608454	contig338end:-59582	MsG0080048505.01.T01:CDS
AAATGTGGAAGCTGGTAATA+TGG	0.411677	contig338end:-61071	MsG0080048505.01.T01:CDS
AACCGCTCGGATGGAAATGT+AGG	0.590382	contig338end:-60721	MsG0080048505.01.T01:CDS
AACGCTGACACTGGAACTTC+CGG	0.476964	contig338end:+61135	None:intergenic
AAGCCGAACTAATCCAAAGT+CGG	0.635791	contig338end:+60571	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCATCAAATATCTTGCT+TGG	-	contig338end:61173-61192	MsG0080048505.01.T01:CDS	30.0%
AAAGATTGTTGCAAATGGAA+GGG	-	contig338end:59208-59227	MsG0080048505.01.T01:three_prime_UTR	30.0%
ACATCATCTTTAAACTTAGG+AGG	+	contig338end:59949-59968	None:intergenic	30.0%
AGTTATCAACTTCGAGAAAA+TGG	-	contig338end:60170-60189	MsG0080048505.01.T01:intron	30.0%
AGTTTAAGAGGATAACCAAA+AGG	+	contig338end:60075-60094	None:intergenic	30.0%
ATCAGCAGATGTAAAAGAAT+TGG	+	contig338end:62555-62574	None:intergenic	30.0%
ATTCTTATGGAGATGATAAC+CGG	-	contig338end:62095-62114	MsG0080048505.01.T01:CDS	30.0%
CAACATGAGTAATTTGATAG+AGG	-	contig338end:59447-59466	MsG0080048505.01.T01:CDS	30.0%
CTAACCAATTATTACCACAA+GGG	+	contig338end:60122-60141	None:intergenic	30.0%
CTCTATCAAATTACTCATGT+TGG	+	contig338end:59449-59468	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig338end	gene	59064	62748	59064	ID=MsG0080048505.01;Name=MsG0080048505.01
contig338end	mRNA	59064	62748	59064	ID=MsG0080048505.01.T01;Parent=MsG0080048505.01;Name=MsG0080048505.01.T01;_AED=0.28;_eAED=0.28;_QI=0\|1\|0.5\|1\|1\|1\|2\|165\|928
contig338end	exon	60498	62748	60498	ID=MsG0080048505.01.T01:exon:2796;Parent=MsG0080048505.01.T01
contig338end	exon	59064	59764	59064	ID=MsG0080048505.01.T01:exon:2797;Parent=MsG0080048505.01.T01
contig338end	CDS	60498	62748	60498	ID=MsG0080048505.01.T01:cds;Parent=MsG0080048505.01.T01
contig338end	CDS	59229	59764	59229	ID=MsG0080048505.01.T01:cds;Parent=MsG0080048505.01.T01
contig338end	three_prime_UTR	59064	59228	59064	ID=MsG0080048505.01.T01:three_prime_utr;Parent=MsG0080048505.01.T01

Gene Sequence

>MsG0080048505.01.T01

ATGAGTTTCGGAGTTTCCTATGTTCTTCACCTTGTTTTACTGTTTTTTATGATGTTTATTGCTGCATGGTCTCAAGATGATTTTGTCATGCAAAAGCTCAAAAGTTCTATAAAATCATCAAGCAATGATCTTGATTGGTCAGACAAAGATTGTTGCAAATGGAAGGGAGTTTCGTGTAGTGGAACGACGGTTACTGAAATTAATTTAGGACAACTCAATATTCAAGGTTCTTTACCAAAAGAATTAATGCAACTCACTGCATTAACTCGTTTTGAATGCAGTCAAAATGGTTTTTCTGGTGATTTTCCTCACATGCCAAATTCACTTCAGAAGTTGTATATCAGCAACAACAGTTTCACTTCCATGCCAAGTGATTTCTTCACCAACATGAGTAATTTGATAGAGGTGGTAATTGATTCTAACCCTTTTTCTCAGTGGCAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCCTTAAGCTTTTTTCTGCTAATAGTGCTGGTTTAGTTGGTGTTATCCCTGAATTCTTTGGAAATGACACTTTTCAAAGTTTGACAGATTTGAAGGTGTCTTATAATTCTCTAGAAGGTAATTTGCCTAATAGTTTATCTGGTAGTTCTATAGAGAACCTTTGGGTGAATAATCAAAATGGTAATAATAAACTCAATGGTACACTTTCAGTTTTGCAAAATATGACGTCGTTGAAAGTAATTTGGGTTCAAAGTAATGCTTTTACTGGTCCTATACCTGATTTTTCAAATCATGATCAATTGTCTGAAGTTAGTTTTCGGGATAACCAGTTAACCGGTGTTGTTCCACAGTCTTTAATTTCGCTTCAAAGTTTGAAAGCTGTGGCTTTGACGAACAATCGTCTTCAAGGGTCACCTCCTAAGTTTAAAGATGATGTTAAGGTTGATAATGATATGGATAAAGGGATTAACAGCTTTTGTACTAAGGTTGTTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTGAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGAAAGATAATGACCCTTGTGGTAATAATTGGTTAGGGATTGTTTGTTCTAGTGGTAACATTTCAGTTATCAACTTCGAGAAAATGGGTTTTTCCGGTAGTATATCTTCTAGTTTTGCAAGTCTAAGTTTTGTGACAAAGTTGCTTCTTGCTAACAATCATCTCACCGGCACTATACCTAAGGAGCTTGCTAGTATGCCGGCTTTGAAAGAGCTAGATGTTTCGAATAATGCGTTGTATGGTCAGGTACCATCGTTTCGCGGAGATGTGGTTGTTAAAACCGGTGGAAATCCTGATATTGGAAAGGACAAACCTCCTGGCTCCCCCGGCTCTAGTTCTGGAGGTGAATATAAGAAGAAAATTAGTGTTGGAGCAATTGTTGGGATTGTGCTGGGGATTGTTTGCTTAATCGGTTTAGGGGTTTTGGTATTTGTTATATGCCGTAGAAGACATAATAAGCGTGATGGTAAAGTTCAAACTCCGAATGCAATAGTGGTACATCCTCGTCATTCAGGTGATGGAAATGGCGTGAAAATAAGTGTTGCAGCAGCCGGAAGTTCCAGTGTCAGCGTTGCAGGAGGAACTAGTGGATTTAGTCCATCGAGTAGTGTTCGAAATGTGGAAGCTGGTAATATGGTGATTTCAATTCAAGTGTTAAGAGAAGTTACAGACAATTTTAGCGAAAAAAACATATTGGGGAAAGGCGGTTTCGCTACTGTATACAAAGGAGAATTGGACGATGGAACAAAGGTTGCAGTGAAAAGGATGAAATCTGAAATGGTTGGTGATGAGGGGTTGAATGAGATCAAGTCTGAAATCGCGGTTCTCACTAAGGTTCGACACAGGCATTTGGTTGCACTCCATGGCTATTGCTTGGACGACAACGAGAAACTTCTTGTCTTTGAATACATGCCTCAGGGAACTCTTAGTCAACATCTCTTTGACTGGAAAGACAATGGGTCGAAACCGCTCGGATGGAAATGTAGGCTTTCCATTGCGTTGGATGTTGCTAGAGGTGTAGAATATCTTCATGGTCTGGCTCAGCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGAGATGATATGCACGCTAAAGTAGCCGACTTTGGATTAGTTCGGCTTGCTCCAGAAGGACAAACTTCATTTGCGACTAGACTTGCTGGAACTTTTGGATATTTGGCACCAGAGTATGCAGTCACGGGTCGAGTCACCACAAAGGTAGACGTATACAGCTATGGCGTGATTCTTATGGAGATGATAACCGGAAGAAAAGTAATTGAGAACAGCCAACCAGACGAGAACATCCACCTTGTTACATGGTTCCGAAGGATGCTACTGAACAAAGACTCATTCCAAAAGGTCATCGATCCAGCAATGGACATAGACGAGGAAGGCTTGGAGAGTTTCAGGACTTTTGCAGGATTGGCCAGCCAATGTTGTGCAAGGGAGCCTCATCAGCGTCCCGACATGGGACATGTAGTGAATGTGCTAGCACCTCTTGTCGAGATTTGGAAGCCGGCTGAACCTGAAGCTGATGACATGTATGGGATTGACTTGGATATAACTTTGCCTCAAGGACTTAGTAAGTGGCCGAATCTTGAAGGAACGAGCAACACACTTGATGTTTCAAATTCTTCTTCGATGGCTGCTAGTTATGAGCATACACAGTCAAGTATCCCTCCTCGGTCTCCTGGATTTGCCAATTCTTTTACATCTGCTGATGCGCGATGA

Protein sequence

>MsG0080048505.01.T01

MSFGVSYVLHLVLLFFMMFIAAWSQDDFVMQKLKSSIKSSSNDLDWSDKDCCKWKGVSCSGTTVTEINLGQLNIQGSLPKELMQLTALTRFECSQNGFSGDFPHMPNSLQKLYISNNSFTSMPSDFFTNMSNLIEVVIDSNPFSQWQIPSSLKNCLALKLFSANSAGLVGVIPEFFGNDTFQSLTDLKVSYNSLEGNLPNSLSGSSIENLWVNNQNGNNKLNGTLSVLQNMTSLKVIWVQSNAFTGPIPDFSNHDQLSEVSFRDNQLTGVVPQSLISLQSLKAVALTNNRLQGSPPKFKDDVKVDNDMDKGINSFCTKVVGQPCSPLVNALLSVVEPFGYPLKLAQSWKDNDPCGNNWLGIVCSSGNISVINFEKMGFSGSISSSFASLSFVTKLLLANNHLTGTIPKELASMPALKELDVSNNALYGQVPSFRGDVVVKTGGNPDIGKDKPPGSPGSSSGGEYKKKISVGAIVGIVLGIVCLIGLGVLVFVICRRRHNKRDGKVQTPNAIVVHPRHSGDGNGVKISVAAAGSSSVSVAGGTSGFSPSSSVRNVEAGNMVISIQVLREVTDNFSEKNILGKGGFATVYKGELDDGTKVAVKRMKSEMVGDEGLNEIKSEIAVLTKVRHRHLVALHGYCLDDNEKLLVFEYMPQGTLSQHLFDWKDNGSKPLGWKCRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMHAKVADFGLVRLAPEGQTSFATRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKVIENSQPDENIHLVTWFRRMLLNKDSFQKVIDPAMDIDEEGLESFRTFAGLASQCCAREPHQRPDMGHVVNVLAPLVEIWKPAEPEADDMYGIDLDITLPQGLSKWPNLEGTSNTLDVSNSSSMAASYEHTQSSIPPRSPGFANSFTSADAR*