AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048845.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048845.01.T01 MTR_3g083180 98.008 502 8 1 1 502 1 500 0.0 1028
MsG0080048845.01.T01 MTR_5g034820 41.766 419 230 11 88 501 149 558 2.77e-99 314
MsG0080048845.01.T01 MTR_3g077340 34.300 207 109 9 105 306 50 234 9.17e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048845.01.T01 AT2G04842 82.051 468 80 2 39 502 31 498 0.0 823
MsG0080048845.01.T01 AT2G04842 82.051 468 80 2 39 502 31 498 0.0 823
MsG0080048845.01.T01 AT5G26830 40.573 419 235 10 88 501 147 556 2.41e-100 317
MsG0080048845.01.T01 AT1G17960 51.852 135 64 1 367 501 96 229 9.44e-40 148
MsG0080048845.01.T01 AT1G17960 36.441 236 117 5 266 501 100 302 1.07e-38 147

Find 0 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAATAAATTAGAAAAG+GGG - contig480end:31026-31045 MsG0080048845.01.T01:intron 10.0%
!! TTCAAAATAAAATAAGTAAT+GGG + contig480end:31185-31204 MsG0080048845.01.T01:intergenic 10.0%
!! TTTCAAAATAAAATAAGTAA+TGG + contig480end:31186-31205 MsG0080048845.01.T01:intergenic 10.0%
!!! TTATTTTATTTTGAAATCAA+TGG - contig480end:31190-31209 MsG0080048845.01.T01:intron 10.0%
!! TATAAATAAATTAGAAAAGG+GGG - contig480end:31027-31046 MsG0080048845.01.T01:intron 15.0%
!! TTAATTGAATTAAACATCAA+AGG + contig480end:28327-28346 MsG0080048845.01.T01:intergenic 15.0%
!!! AGATACTTGTTATTTTATAA+AGG + contig480end:28458-28477 MsG0080048845.01.T01:intergenic 15.0%
!!! ATCAAAATAAATTTGTTAAC+CGG - contig480end:29408-29427 MsG0080048845.01.T01:intron 15.0%
!!! GATACTTGTTATTTTATAAA+GGG + contig480end:28457-28476 MsG0080048845.01.T01:intergenic 15.0%
!!! TAACAAATTTATTTTGATCA+AGG + contig480end:29406-29425 MsG0080048845.01.T01:intergenic 15.0%
!!! TTTTAATTCATTTCTTTAAG+AGG - contig480end:31270-31289 MsG0080048845.01.T01:intron 15.0%
!! ATAAAATAACAAGTATCTCT+GGG - contig480end:28460-28479 MsG0080048845.01.T01:CDS 20.0%
!! ATGAGATAAATTTATCTACA+CGG - contig480end:31425-31444 MsG0080048845.01.T01:CDS 20.0%
!! CAAAATTAGGAATCATAAAA+AGG + contig480end:30362-30381 MsG0080048845.01.T01:intergenic 20.0%
!! TAATGAATTTGACTGAAATA+TGG - contig480end:28042-28061 MsG0080048845.01.T01:intron 20.0%
!! TACATAACTACCAAATATAA+AGG + contig480end:28818-28837 MsG0080048845.01.T01:intergenic 20.0%
!! TATAAAATAACAAGTATCTC+TGG - contig480end:28459-28478 MsG0080048845.01.T01:CDS 20.0%
!! TTCTTCTATTAAATTTATGC+AGG - contig480end:30431-30450 MsG0080048845.01.T01:CDS 20.0%
!! TTGTATACCAAAATATGATA+AGG + contig480end:30693-30712 MsG0080048845.01.T01:intergenic 20.0%
!!! ATCATATTTTGGTATACAAA+AGG - contig480end:30694-30713 MsG0080048845.01.T01:intron 20.0%
!!! ATGTAATCAGTTTTTATTTG+AGG - contig480end:28170-28189 MsG0080048845.01.T01:intron 20.0%
!!! ATTTTGTTGTAAACAAAATG+AGG + contig480end:29483-29502 MsG0080048845.01.T01:intergenic 20.0%
!!! CATATTTTTAAAGTCAGTAA+TGG - contig480end:29667-29686 MsG0080048845.01.T01:intron 20.0%
!!! CATTACTGACTTTAAAAATA+TGG + contig480end:29669-29688 MsG0080048845.01.T01:intergenic 20.0%
!!! GTTTTATTATGACTTTGATA+TGG - contig480end:28742-28761 MsG0080048845.01.T01:intron 20.0%
!!! GTTTTTTGTATTAATTCAAG+TGG - contig480end:31052-31071 MsG0080048845.01.T01:intron 20.0%
!!! TTATTTCTTATATTGTCTGT+AGG - contig480end:28896-28915 MsG0080048845.01.T01:intron 20.0%
!!! TTTATGATTCCTAATTTTGT+GGG - contig480end:30363-30382 MsG0080048845.01.T01:intron 20.0%
!!! TTTTATGATTCCTAATTTTG+TGG - contig480end:30362-30381 MsG0080048845.01.T01:intron 20.0%
! AAAGGAAAAGAAAAAGAAAG+AGG + contig480end:27632-27651 MsG0080048845.01.T01:intergenic 25.0%
! AAATACTGAAACGTATTTCT+GGG - contig480end:28541-28560 MsG0080048845.01.T01:CDS 25.0%
! AAATTGCGATAATGTTTCTT+CGG + contig480end:31392-31411 MsG0080048845.01.T01:intergenic 25.0%
! AACATATGTGTCTATTATTG+AGG + contig480end:29334-29353 MsG0080048845.01.T01:intergenic 25.0%
! AAGGAAAAGAAAAAGAAAGA+GGG + contig480end:27631-27650 MsG0080048845.01.T01:intergenic 25.0%
! ACATATGTGTCTATTATTGA+GGG + contig480end:29333-29352 MsG0080048845.01.T01:intergenic 25.0%
! ACCAATATGATAAATTGTGA+TGG + contig480end:29048-29067 MsG0080048845.01.T01:intergenic 25.0%
! AGTTTAACTAATAAGTTGCA+GGG - contig480end:28633-28652 MsG0080048845.01.T01:CDS 25.0%
! ATATGATAAGGACAATTCAT+TGG + contig480end:30681-30700 MsG0080048845.01.T01:intergenic 25.0%
! ATTTATGTACCCACAAAATT+AGG + contig480end:30375-30394 MsG0080048845.01.T01:intergenic 25.0%
! CCAATATGATAAATTGTGAT+GGG + contig480end:29047-29066 MsG0080048845.01.T01:intergenic 25.0%
! TAAAATAACAAGTATCTCTG+GGG - contig480end:28461-28480 MsG0080048845.01.T01:CDS 25.0%
! TAAACACAACAAAAGTTTCA+TGG + contig480end:27845-27864 MsG0080048845.01.T01:intergenic 25.0%
! TAGTTTAACTAATAAGTTGC+AGG - contig480end:28632-28651 MsG0080048845.01.T01:CDS 25.0%
! TGAATTATGCTACATATTCA+TGG - contig480end:28862-28881 MsG0080048845.01.T01:intron 25.0%
! TTCAAATCTTTATCTGTCAA+AGG + contig480end:28770-28789 MsG0080048845.01.T01:intergenic 25.0%
! TTCTATTAAATTTATGCAGG+AGG - contig480end:30434-30453 MsG0080048845.01.T01:CDS 25.0%
!! ATTACACATTAAGGTATCAT+AGG + contig480end:31216-31235 MsG0080048845.01.T01:intergenic 25.0%
!! CTAAAAAAATGGTGGAAAAT+AGG - contig480end:27958-27977 MsG0080048845.01.T01:intron 25.0%
!! GAATTGTCCTTATCATATTT+TGG - contig480end:30683-30702 MsG0080048845.01.T01:intron 25.0%
!! GACACATAATTGAAGATTTT+TGG - contig480end:30505-30524 MsG0080048845.01.T01:CDS 25.0%
!! TAAATGCAGAAACTTTGAAA+AGG + contig480end:31248-31267 MsG0080048845.01.T01:intergenic 25.0%
!!! TCTTGATTTGTTTTCTTTAC+AGG - contig480end:30250-30269 MsG0080048845.01.T01:CDS 25.0%
!!! TTCTTATCCTTGTTTTGATA+TGG - contig480end:29623-29642 MsG0080048845.01.T01:intron 25.0%
AAAAAAGTTCACATAGAACG+TGG - contig480end:30528-30547 MsG0080048845.01.T01:intron 30.0%
AAACTATTTGTGAACTTGTG+GGG + contig480end:29548-29567 MsG0080048845.01.T01:intergenic 30.0%
AAAGAAAAAGTTATTGCCTG+AGG - contig480end:29947-29966 MsG0080048845.01.T01:intron 30.0%
AAAGATAGATGTCAAGATTG+AGG - contig480end:31570-31589 MsG0080048845.01.T01:CDS 30.0%
AATCTTGCCATATCAAAACA+AGG + contig480end:29633-29652 MsG0080048845.01.T01:intergenic 30.0%
AGAACCAAAGAATTATTCCA+TGG + contig480end:29574-29593 MsG0080048845.01.T01:intergenic 30.0%
AGGAAAAGAAAAAGAAAGAG+GGG + contig480end:27630-27649 MsG0080048845.01.T01:intergenic 30.0%
ATACTTCAGCAGAATGAAAA+TGG - contig480end:29810-29829 MsG0080048845.01.T01:intron 30.0%
ATGACTATTATACACATGCA+TGG + contig480end:29201-29220 MsG0080048845.01.T01:intergenic 30.0%
CAAACTATTTGTGAACTTGT+GGG + contig480end:29549-29568 MsG0080048845.01.T01:intergenic 30.0%
CACAAGTTCACAAATAGTTT+GGG - contig480end:29548-29567 MsG0080048845.01.T01:intron 30.0%
CATGTGTATAATAGTCATTC+TGG - contig480end:29203-29222 MsG0080048845.01.T01:intron 30.0%
CCCATCACAATTTATCATAT+TGG - contig480end:29044-29063 MsG0080048845.01.T01:CDS 30.0%
CTATGGAAGGAAAAAGAAAT+GGG - contig480end:29141-29160 MsG0080048845.01.T01:CDS 30.0%
GAAAACTGATAAGAGATAGA+AGG + contig480end:29073-29092 MsG0080048845.01.T01:intergenic 30.0%
GAAATACTGAAACGTATTTC+TGG - contig480end:28540-28559 MsG0080048845.01.T01:CDS 30.0%
GAAGAAACATTATCGCAATT+TGG - contig480end:31391-31410 MsG0080048845.01.T01:CDS 30.0%
GATGGTAAGTCCTTTATATT+TGG - contig480end:28805-28824 MsG0080048845.01.T01:intron 30.0%
GTATTTCATGTCATAGAGAA+AGG + contig480end:28527-28546 MsG0080048845.01.T01:intergenic 30.0%
GTTGAAGTTTAAAAGCTAGT+GGG - contig480end:29112-29131 MsG0080048845.01.T01:CDS 30.0%
GTTTATAGATATGAACTGTC+TGG - contig480end:30768-30787 MsG0080048845.01.T01:intron 30.0%
TCAATCTTGACATCTATCTT+TGG + contig480end:31571-31590 MsG0080048845.01.T01:intergenic 30.0%
TGAAACTTCTTCTCTTACAA+GGG + contig480end:28946-28965 MsG0080048845.01.T01:intergenic 30.0%
TGAAGCTCATAGAAGAATAT+TGG - contig480end:28971-28990 MsG0080048845.01.T01:CDS 30.0%
TGTTGAAGTTTAAAAGCTAG+TGG - contig480end:29111-29130 MsG0080048845.01.T01:CDS 30.0%
TTGAAACTTCTTCTCTTACA+AGG + contig480end:28947-28966 MsG0080048845.01.T01:intergenic 30.0%
TTGAGACAATCGTTATTGTA+TGG - contig480end:29228-29247 MsG0080048845.01.T01:intron 30.0%
TTTGAATGAACCATACAAGA+TGG - contig480end:28995-29014 MsG0080048845.01.T01:CDS 30.0%
! AAAGATGCTTTGGATGATAA+AGG - contig480end:31502-31521 MsG0080048845.01.T01:CDS 30.0%
! AATACTGAAACGTATTTCTG+GGG - contig480end:28542-28561 MsG0080048845.01.T01:CDS 30.0%
! AATTGGCTTCATGATTACTT+AGG + contig480end:29515-29534 MsG0080048845.01.T01:intergenic 30.0%
! CAATGTTGTATGTCTGAAAT+TGG - contig480end:29834-29853 MsG0080048845.01.T01:intron 30.0%
! TAAAACCCATTTTCTATCCA+AGG + contig480end:28728-28747 MsG0080048845.01.T01:intergenic 30.0%
! TTATGTTCCTTTTTCCTTGA+AGG - contig480end:29996-30015 MsG0080048845.01.T01:intron 30.0%
! TTTTCTTTCAATGCAATGCA+AGG + contig480end:29935-29954 MsG0080048845.01.T01:intergenic 30.0%
!! TGCACACATATTTTGTTTAG+AGG - contig480end:31327-31346 MsG0080048845.01.T01:intron 30.0%
!!! TTCTGGGGAATTATTTTTGA+GGG - contig480end:28557-28576 MsG0080048845.01.T01:CDS 30.0%
!!! TTTCTGGGGAATTATTTTTG+AGG - contig480end:28556-28575 MsG0080048845.01.T01:CDS 30.0%
AAAAACAGATGAAACACCTC+AGG + contig480end:29966-29985 MsG0080048845.01.T01:intergenic 35.0%
AAAAGAAACCAATGCTGCAA+AGG - contig480end:30129-30148 MsG0080048845.01.T01:intron 35.0%
AACTTGCAGAACATATAGAC+AGG + contig480end:30289-30308 MsG0080048845.01.T01:intergenic 35.0%
AAGTCATATCCCACTAAGAA+GGG + contig480end:28110-28129 MsG0080048845.01.T01:intergenic 35.0%
ACAAATCAAGATCTTGTCCT+AGG + contig480end:30241-30260 MsG0080048845.01.T01:intergenic 35.0%
ACAGATAGTTGAAAAGATGG+TGG - contig480end:27914-27933 MsG0080048845.01.T01:intron 35.0%
ACCAGATTAAAGATGAGATC+AGG - contig480end:31350-31369 MsG0080048845.01.T01:intron 35.0%
AGCAATAGACTCAAGTTCAA+CGG + contig480end:30087-30106 MsG0080048845.01.T01:intergenic 35.0%
AGCACAGATAGTTGAAAAGA+TGG - contig480end:27911-27930 MsG0080048845.01.T01:intron 35.0%
ATCTATCTTTGGCCCATAAA+AGG + contig480end:31560-31579 MsG0080048845.01.T01:intergenic 35.0%
ATGGGATCAACATACATTTG+AGG + contig480end:31167-31186 MsG0080048845.01.T01:intergenic 35.0%
CAGATTAAAGATGAGATCAG+GGG - contig480end:31352-31371 MsG0080048845.01.T01:intron 35.0%
CATTAGTAGGGAGAACAATT+CGG + contig480end:27766-27785 MsG0080048845.01.T01:intergenic 35.0%
CCAAACTATTTGTGAACTTG+TGG + contig480end:29550-29569 MsG0080048845.01.T01:intergenic 35.0%
CCACAAGTTCACAAATAGTT+TGG - contig480end:29547-29566 MsG0080048845.01.T01:intron 35.0%
CCAGATTAAAGATGAGATCA+GGG - contig480end:31351-31370 MsG0080048845.01.T01:intron 35.0%
CTAATGGGATCAACAATCAA+TGG + contig480end:31001-31020 MsG0080048845.01.T01:intergenic 35.0%
CTATGCAGCATTACACATTA+AGG + contig480end:31225-31244 MsG0080048845.01.T01:intergenic 35.0%
CTCTAAATACTTGAGCTTAG+TGG + contig480end:29751-29770 MsG0080048845.01.T01:intergenic 35.0%
GAAACTTCTTCTCTTACAAG+GGG + contig480end:28945-28964 MsG0080048845.01.T01:intergenic 35.0%
GAAGAGAATCAAGAAAGAGA+TGG - contig480end:28787-28806 MsG0080048845.01.T01:intron 35.0%
GATTTGATCTCCATACTTTG+AGG - contig480end:31108-31127 MsG0080048845.01.T01:intron 35.0%
GCTATGGAAGGAAAAAGAAA+TGG - contig480end:29140-29159 MsG0080048845.01.T01:CDS 35.0%
GGAAAAAGGAACATAAGTTG+AGG + contig480end:29992-30011 MsG0080048845.01.T01:intergenic 35.0%
GGATAAGAAACAAAATGCAG+TGG + contig480end:29612-29631 MsG0080048845.01.T01:intergenic 35.0%
GTGGAGTTTAAGGAAATGAA+TGG + contig480end:27606-27625 MsG0080048845.01.T01:intergenic 35.0%
TCAAAGAAGAAGCTAAACGT+CGG - contig480end:30204-30223 MsG0080048845.01.T01:CDS 35.0%
TCATAGAGAAAGGCAGATAA+AGG + contig480end:28517-28536 MsG0080048845.01.T01:intergenic 35.0%
TCCAAAATCTCCATCTTGTA+TGG + contig480end:29008-29027 MsG0080048845.01.T01:intergenic 35.0%
TCTATTGTATACACCACATG+TGG - contig480end:30557-30576 MsG0080048845.01.T01:intron 35.0%
TGAAATTGGAACTGTGAAGA+TGG - contig480end:29848-29867 MsG0080048845.01.T01:intron 35.0%
TGGACCTATCAAATTGATGA+CGG - contig480end:31526-31545 MsG0080048845.01.T01:CDS 35.0%
TGTCGGAGAAGATGATATAT+GGG - contig480end:31459-31478 MsG0080048845.01.T01:CDS 35.0%
TGTTGGACGATTCATTAGTA+GGG + contig480end:27778-27797 MsG0080048845.01.T01:intergenic 35.0%
TTCTGCTGAAGTATGTCAAT+TGG + contig480end:29804-29823 MsG0080048845.01.T01:intergenic 35.0%
TTTCCAGTAGATTCAACATG+AGG + contig480end:30050-30069 MsG0080048845.01.T01:intergenic 35.0%
! ACCATACAAGATGGAGATTT+TGG - contig480end:29004-29023 MsG0080048845.01.T01:CDS 35.0%
! CAAGGTACTTTGTTAGAGAA+AGG + contig480end:29388-29407 MsG0080048845.01.T01:intergenic 35.0%
! GCTTTTAAACTTCAACATGC+AGG + contig480end:29108-29127 MsG0080048845.01.T01:intergenic 35.0%
! TAACTTCCACACTAGTTTGA+AGG + contig480end:29715-29734 MsG0080048845.01.T01:intergenic 35.0%
! TACAAGATGGAGATTTTGGA+AGG - contig480end:29008-29027 MsG0080048845.01.T01:CDS 35.0%
! TGGTCATTTGGACTTTTACA+AGG - contig480end:30605-30624 MsG0080048845.01.T01:intron 35.0%
! TTGAGGGTAAAGCTTTTGAA+CGG + contig480end:28687-28706 MsG0080048845.01.T01:intergenic 35.0%
!! AAGTCAGTAATGGTGTTATG+AGG - contig480end:29677-29696 MsG0080048845.01.T01:intron 35.0%
!! ACAATTAGCACGACTGATTT+TGG - contig480end:28421-28440 MsG0080048845.01.T01:CDS 35.0%
!! ATAAGTTGGTTCTTTGGTAC+AGG - contig480end:31300-31319 MsG0080048845.01.T01:intron 35.0%
!! ATGCTCATAAGTTGGTTCTT+TGG - contig480end:31294-31313 MsG0080048845.01.T01:intron 35.0%
!! CTCAGCTTTAAAAGATGCTT+TGG - contig480end:31492-31511 MsG0080048845.01.T01:CDS 35.0%
!!! AATTATTTTTGAGGGGGTGT+TGG - contig480end:28565-28584 MsG0080048845.01.T01:CDS 35.0%
!!! CAAAGCATCTTTTAAAGCTG+AGG + contig480end:31494-31513 MsG0080048845.01.T01:intergenic 35.0%
!!! TCTGGGGAATTATTTTTGAG+GGG - contig480end:28558-28577 MsG0080048845.01.T01:CDS 35.0%
AAACAAAATGCAGTGGAGCA+TGG + contig480end:29605-29624 MsG0080048845.01.T01:intergenic 40.0%
AAAGGATATACGGTACTGCA+TGG - contig480end:30147-30166 MsG0080048845.01.T01:CDS 40.0%
AAATTTATGCAGGAGGATGC+TGG - contig480end:30441-30460 MsG0080048845.01.T01:CDS 40.0%
AAGAAAAAGAAAGAGGGGTG+TGG + contig480end:27625-27644 MsG0080048845.01.T01:intergenic 40.0%
AAGGATATACGGTACTGCAT+GGG - contig480end:30148-30167 MsG0080048845.01.T01:CDS 40.0%
AATTTCCTGGTGAAGAAGGA+TGG + contig480end:27677-27696 MsG0080048845.01.T01:intergenic 40.0%
AGCTAGCGCTAAAAAAATGG+TGG - contig480end:27950-27969 MsG0080048845.01.T01:intron 40.0%
ATGTGGCAAAAGCTGATCTT+TGG - contig480end:30574-30593 MsG0080048845.01.T01:intron 40.0%
ATGTTTCTTCGGTAAGATCC+AGG + contig480end:31381-31400 MsG0080048845.01.T01:intergenic 40.0%
ATTTCACAACTGTCGCATAG+GGG - contig480end:31086-31105 MsG0080048845.01.T01:intron 40.0%
CAAAGAAGAAGCTAAACGTC+GGG - contig480end:30205-30224 MsG0080048845.01.T01:CDS 40.0%
CAAGTCATATCCCACTAAGA+AGG + contig480end:28111-28130 MsG0080048845.01.T01:intergenic 40.0%
CATTTCACAACTGTCGCATA+GGG - contig480end:31085-31104 MsG0080048845.01.T01:intron 40.0%
CCAATGCTGCAAAGGATATA+CGG - contig480end:30137-30156 MsG0080048845.01.T01:CDS 40.0%
CCCTGATCTCATCTTTAATC+TGG + contig480end:31354-31373 MsG0080048845.01.T01:intergenic 40.0%
CCTCAAGCAAAAGTCACAAT+CGG - contig480end:28701-28720 MsG0080048845.01.T01:CDS 40.0%
CTACTAACTCTGTGGTTCTT+AGG - contig480end:29253-29272 MsG0080048845.01.T01:intron 40.0%
CTCAAGCAAAAGTCACAATC+GGG - contig480end:28702-28721 MsG0080048845.01.T01:CDS 40.0%
CTGTCGGAGAAGATGATATA+TGG - contig480end:31458-31477 MsG0080048845.01.T01:CDS 40.0%
CTTCTTAGTGGGATATGACT+TGG - contig480end:28109-28128 MsG0080048845.01.T01:intron 40.0%
GAACTGTCTGGAAGTTTACA+CGG - contig480end:30780-30799 MsG0080048845.01.T01:intron 40.0%
GAGAGCTAGCGCTAAAAAAA+TGG - contig480end:27947-27966 MsG0080048845.01.T01:intron 40.0%
GTATGGATCTACTAACTCTG+TGG - contig480end:29245-29264 MsG0080048845.01.T01:intron 40.0%
GTGTTGGACGATTCATTAGT+AGG + contig480end:27779-27798 MsG0080048845.01.T01:intergenic 40.0%
GTTGAACTTGAGTCTATTGC+TGG - contig480end:30086-30105 MsG0080048845.01.T01:intron 40.0%
TCAAGATTGAGGATGCTCTT+GGG - contig480end:31581-31600 MsG0080048845.01.T01:CDS 40.0%
TCATTTCACAACTGTCGCAT+AGG - contig480end:31084-31103 MsG0080048845.01.T01:intron 40.0%
TGATCACCTTCAAACTAGTG+TGG - contig480end:29706-29725 MsG0080048845.01.T01:intron 40.0%
TGGGCCATGGAATAATTCTT+TGG - contig480end:29567-29586 MsG0080048845.01.T01:intron 40.0%
TTCACAAATAGTTTGGGCCA+TGG - contig480end:29554-29573 MsG0080048845.01.T01:intron 40.0%
TTGGAAGATCAGTGGTCATT+TGG - contig480end:30593-30612 MsG0080048845.01.T01:intron 40.0%
TTTATGTCGTTGACGAGTTG+AGG - contig480end:27886-27905 MsG0080048845.01.T01:intron 40.0%
! AGCCTTGTAACCTCAAAGTA+TGG + contig480end:31121-31140 MsG0080048845.01.T01:intergenic 40.0%
! ATGCTTTGGATGATAAAGGC+TGG - contig480end:31506-31525 MsG0080048845.01.T01:CDS 40.0%
! CGATTGTGACTTTTGCTTGA+GGG + contig480end:28703-28722 MsG0080048845.01.T01:intergenic 40.0%
! CTATCGGGATTTTCCTGTTA+GGG - contig480end:30728-30747 MsG0080048845.01.T01:intron 40.0%
! CTTTCTTTCTGAGAGCAATG+TGG + contig480end:28240-28259 MsG0080048845.01.T01:intergenic 40.0%
! GGACCTATCAAATTGATGAC+GGG - contig480end:31527-31546 MsG0080048845.01.T01:CDS 40.0%
! GTTTAAAAGCTAGTGGGTGA+AGG - contig480end:29118-29137 MsG0080048845.01.T01:CDS 40.0%
! TAAGAGGCATGCTCATAAGT+TGG - contig480end:31286-31305 MsG0080048845.01.T01:intron 40.0%
! TCTGGGGTACTCAAATTGAA+AGG - contig480end:28477-28496 MsG0080048845.01.T01:CDS 40.0%
! TCTTCTCCGACAGATTTTTC+AGG + contig480end:31451-31470 MsG0080048845.01.T01:intergenic 40.0%
! TGTTCCTTTTTCCTTGAAGG+CGG - contig480end:29999-30018 MsG0080048845.01.T01:intron 40.0%
! TTATGTCGTTGACGAGTTGA+GGG - contig480end:27887-27906 MsG0080048845.01.T01:intron 40.0%
!! AAAGGAAGCGTCATTCCTAT+CGG - contig480end:30712-30731 MsG0080048845.01.T01:intron 40.0%
!! ACCTATCAAATTGATGACGG+GGG - contig480end:31529-31548 MsG0080048845.01.T01:CDS 40.0%
!! AGATGAAAGTGTTGTAGCCA+TGG + contig480end:27582-27601 MsG0080048845.01.T01:intergenic 40.0%
!! CTCCATACTTTGAGGTTACA+AGG - contig480end:31116-31135 MsG0080048845.01.T01:intron 40.0%
!! GACCTATCAAATTGATGACG+GGG - contig480end:31528-31547 MsG0080048845.01.T01:CDS 40.0%
!! GATGAAAGTGTTGTAGCCAT+GGG + contig480end:27581-27600 MsG0080048845.01.T01:intergenic 40.0%
!! TATCATGTGCAGCTTGTTAC+TGG - contig480end:29353-29372 MsG0080048845.01.T01:intron 40.0%
!! TTAGTTTTCTGGCACCCAAA+GGG - contig480end:30471-30490 MsG0080048845.01.T01:CDS 40.0%
!!! CTGGGGAATTATTTTTGAGG+GGG - contig480end:28559-28578 MsG0080048845.01.T01:CDS 40.0%
!!! GCTCAGAAAGAGTACTTTTC+AGG - contig480end:29909-29928 MsG0080048845.01.T01:intron 40.0%
!!! GGAGATTTTGGAAGGCATTA+AGG - contig480end:29016-29035 MsG0080048845.01.T01:CDS 40.0%
!!! TTTAGTTTTCTGGCACCCAA+AGG - contig480end:30470-30489 MsG0080048845.01.T01:CDS 40.0%
AAGCTAAACGTCGGGATCAT+AGG - contig480end:30213-30232 MsG0080048845.01.T01:CDS 45.0%
ACACGGCCTGAAAAATCTGT+CGG - contig480end:31442-31461 MsG0080048845.01.T01:CDS 45.0%
AGTCTATTGCTGGTGCTTAC+TGG - contig480end:30096-30115 MsG0080048845.01.T01:intron 45.0%
ATCGGGCCTTGGATAGAAAA+TGG - contig480end:28719-28738 MsG0080048845.01.T01:CDS 45.0%
CATATCCCACTAAGAAGGGT+CGG + contig480end:28106-28125 MsG0080048845.01.T01:intergenic 45.0%
CCGTATATCCTTTGCAGCAT+TGG + contig480end:30140-30159 MsG0080048845.01.T01:intergenic 45.0%
CCTAACAGGAAAATCCCGAT+AGG + contig480end:30730-30749 MsG0080048845.01.T01:intergenic 45.0%
CCTAATTCTGCTACCCTAAC+AGG + contig480end:30744-30763 MsG0080048845.01.T01:intergenic 45.0%
CCTGTTAGGGTAGCAGAATT+AGG - contig480end:30741-30760 MsG0080048845.01.T01:intron 45.0%
CCTTCTCAGAATTCGTCACA+CGG - contig480end:27799-27818 MsG0080048845.01.T01:CDS 45.0%
GGACCTCATGTTGAATCTAC+TGG - contig480end:30044-30063 MsG0080048845.01.T01:intron 45.0%
GGAGAACGAAGAGAACGAAA+AGG + contig480end:27650-27669 MsG0080048845.01.T01:intergenic 45.0%
GGAGAATTTCCTGGTGAAGA+AGG + contig480end:27681-27700 MsG0080048845.01.T01:intergenic 45.0%
GGTTGTTGTCGTTGTCTTTC+TGG - contig480end:28130-28149 MsG0080048845.01.T01:intron 45.0%
GTCAAGATTGAGGATGCTCT+TGG - contig480end:31580-31599 MsG0080048845.01.T01:CDS 45.0%
GTCTCACAATAGCACCCTTT+GGG + contig480end:30488-30507 MsG0080048845.01.T01:intergenic 45.0%
GTGAGCTTGCAAGACTAGTA+AGG - contig480end:30951-30970 MsG0080048845.01.T01:intron 45.0%
TAGGGAGAACAATTCGGTCT+TGG + contig480end:27760-27779 MsG0080048845.01.T01:intergenic 45.0%
TCCCCCGTCATCAATTTGAT+AGG + contig480end:31533-31552 MsG0080048845.01.T01:intergenic 45.0%
TCGGGCCTTGGATAGAAAAT+GGG - contig480end:28720-28739 MsG0080048845.01.T01:CDS 45.0%
TGAAACCTCTAACGCGGAAA+AGG + contig480end:30806-30825 MsG0080048845.01.T01:intergenic 45.0%
TGGGGTTGCTCTTGGATAAA+GGG - contig480end:29449-29468 MsG0080048845.01.T01:intron 45.0%
TGTCTCACAATAGCACCCTT+TGG + contig480end:30489-30508 MsG0080048845.01.T01:intergenic 45.0%
TTGCATGACATGACTGTCCT+GGG - contig480end:30974-30993 MsG0080048845.01.T01:intron 45.0%
TTGTGAACTTGTGGGGATGA+TGG + contig480end:29541-29560 MsG0080048845.01.T01:intergenic 45.0%
! AAAGAGGGGTGTGGAGTTTA+AGG + contig480end:27616-27635 MsG0080048845.01.T01:intergenic 45.0%
! AAGTGTTGTAGCCATGGGAA+CGG + contig480end:27576-27595 MsG0080048845.01.T01:intergenic 45.0%
! ACGAATTCTGAGAAGGGTGT+TGG + contig480end:27795-27814 MsG0080048845.01.T01:intergenic 45.0%
! AGATCAGCTTTTGCCACATG+TGG + contig480end:30573-30592 MsG0080048845.01.T01:intergenic 45.0%
! CCGATTGTGACTTTTGCTTG+AGG + contig480end:28704-28723 MsG0080048845.01.T01:intergenic 45.0%
! CCTATCGGGATTTTCCTGTT+AGG - contig480end:30727-30746 MsG0080048845.01.T01:intron 45.0%
! CGTGTGACGAATTCTGAGAA+GGG + contig480end:27801-27820 MsG0080048845.01.T01:intergenic 45.0%
! GCTGATCTTTGGAAGATCAG+TGG - contig480end:30585-30604 MsG0080048845.01.T01:intron 45.0%
! GTTCCTTTTTCCTTGAAGGC+GGG - contig480end:30000-30019 MsG0080048845.01.T01:intron 45.0%
! TACTCTTTTCACCGTTCCCA+TGG - contig480end:27562-27581 MsG0080048845.01.T01:CDS 45.0%
! TGTGGGGATGATGGTGAAAT+TGG + contig480end:29532-29551 MsG0080048845.01.T01:intergenic 45.0%
! TTCCTTTTTCCTTGAAGGCG+GGG - contig480end:30001-30020 MsG0080048845.01.T01:intron 45.0%
!! AAGGAAGCGTCATTCCTATC+GGG - contig480end:30713-30732 MsG0080048845.01.T01:intron 45.0%
!! TATCAAATTGATGACGGGGG+AGG - contig480end:31532-31551 MsG0080048845.01.T01:CDS 45.0%
!! TTATTTATAAAAAAACTAAT+GGG + contig480end:31016-31035 MsG0080048845.01.T01:intergenic 5.0%
!! TTTATAAATAAATTAGAAAA+GGG - contig480end:31025-31044 MsG0080048845.01.T01:intron 5.0%
!! TTTATTTATAAAAAAACTAA+TGG + contig480end:31017-31036 MsG0080048845.01.T01:intergenic 5.0%
!!! TTTTATAAATAAATTAGAAA+AGG - contig480end:31024-31043 MsG0080048845.01.T01:intron 5.0%
AACAATTCGGTCTTGGCGGT+CGG + contig480end:27753-27772 MsG0080048845.01.T01:intergenic 50.0%
AGCAAGGACTTAGAGAGGAC+CGG + contig480end:29430-29449 MsG0080048845.01.T01:intergenic 50.0%
AGGATGCTCTTGGGAGAAAG+TGG - contig480end:31590-31609 MsG0080048845.01.T01:CDS 50.0%
ATGTAGCCGACCCTTCTTAG+TGG - contig480end:28097-28116 MsG0080048845.01.T01:intron 50.0%
ATTGCTGGTGCTTACTGGAG+AGG - contig480end:30101-30120 MsG0080048845.01.T01:intron 50.0%
CAAAAGTCACAATCGGGCCT+TGG - contig480end:28708-28727 MsG0080048845.01.T01:CDS 50.0%
CAACATGAGGTCCAGCACAT+AGG + contig480end:30037-30056 MsG0080048845.01.T01:intergenic 50.0%
CAACTCCATCCTTCTTCACC+AGG - contig480end:27669-27688 MsG0080048845.01.T01:CDS 50.0%
CCTGTGTGAAACCTCTAACG+CGG + contig480end:30812-30831 MsG0080048845.01.T01:intergenic 50.0%
CTGGGGTTGCTCTTGGATAA+AGG - contig480end:29448-29467 MsG0080048845.01.T01:intron 50.0%
CTGGTGAAGAAGGATGGAGT+TGG + contig480end:27671-27690 MsG0080048845.01.T01:intergenic 50.0%
GATCAACAATCAATGGCCCC+AGG + contig480end:30994-31013 MsG0080048845.01.T01:intergenic 50.0%
GGAGAACAATTCGGTCTTGG+CGG + contig480end:27757-27776 MsG0080048845.01.T01:intergenic 50.0%
GTCCTCTCTAAGTCCTTGCT+GGG - contig480end:29430-29449 MsG0080048845.01.T01:intron 50.0%
GTGGCAGTGTTCAACCATAC+AGG - contig480end:31609-31628 MsG0080048845.01.T01:CDS 50.0%
GTTGCATGACATGACTGTCC+TGG - contig480end:30973-30992 MsG0080048845.01.T01:intron 50.0%
TCCTCTCTAAGTCCTTGCTG+GGG - contig480end:29431-29450 MsG0080048845.01.T01:intron 50.0%
TGCATGACATGACTGTCCTG+GGG - contig480end:30975-30994 MsG0080048845.01.T01:intron 50.0%
TGTAGCCGACCCTTCTTAGT+GGG - contig480end:28098-28117 MsG0080048845.01.T01:intron 50.0%
TTATGCAGGAGGATGCTGGT+GGG - contig480end:30445-30464 MsG0080048845.01.T01:CDS 50.0%
TTTATGCAGGAGGATGCTGG+TGG - contig480end:30444-30463 MsG0080048845.01.T01:CDS 50.0%
! AAGCTAGTGGGTGAAGGCTA+TGG - contig480end:29124-29143 MsG0080048845.01.T01:CDS 50.0%
! CATTTGAGGTGCTAGCTCAG+TGG + contig480end:31153-31172 MsG0080048845.01.T01:intergenic 50.0%
! CCGTGTGACGAATTCTGAGA+AGG + contig480end:27802-27821 MsG0080048845.01.T01:intergenic 50.0%
! CTTTCTGAGAGCAATGTGGC+AGG + contig480end:28236-28255 MsG0080048845.01.T01:intergenic 50.0%
! TAGTGGGTGAAGGCTATGGA+AGG - contig480end:29128-29147 MsG0080048845.01.T01:CDS 50.0%
!!! CTGGTGGGGGTTTAGTTTTC+TGG - contig480end:30460-30479 MsG0080048845.01.T01:CDS 50.0%
ACCCCAGCAAGGACTTAGAG+AGG + contig480end:29435-29454 MsG0080048845.01.T01:intergenic 55.0%
ATCCAAGAGCAACCCCAGCA+AGG + contig480end:29446-29465 MsG0080048845.01.T01:intergenic 55.0%
CCGCGTTAGAGGTTTCACAC+AGG - contig480end:30809-30828 MsG0080048845.01.T01:intron 55.0%
CTCCCCGCCTTCAAGGAAAA+AGG + contig480end:30006-30025 MsG0080048845.01.T01:intergenic 55.0%
GGCGAGAGTGGAGAATTTCC+TGG + contig480end:27690-27709 MsG0080048845.01.T01:intergenic 55.0%
GGTCCTCTCTAAGTCCTTGC+TGG - contig480end:29429-29448 MsG0080048845.01.T01:intron 55.0%
GTGTGCGCATGTGATGGCAA+TGG - contig480end:28661-28680 MsG0080048845.01.T01:CDS 55.0%
GTTGCAGTGTGCGCATGTGA+TGG - contig480end:28655-28674 MsG0080048845.01.T01:CDS 55.0%
TATGCAGGAGGATGCTGGTG+GGG - contig480end:30446-30465 MsG0080048845.01.T01:CDS 55.0%
! TTTTCCTTGAAGGCGGGGAG+TGG - contig480end:30006-30025 MsG0080048845.01.T01:intron 55.0%
!! AGATGAGATCAGGGGTGTCC+TGG - contig480end:31360-31379 MsG0080048845.01.T01:intron 55.0%
!!! ACGGGGGAGGTGCCTTTTAT+GGG - contig480end:31545-31564 MsG0080048845.01.T01:CDS 55.0%
ATGCAGGAGGATGCTGGTGG+GGG - contig480end:30447-30466 MsG0080048845.01.T01:CDS 60.0%
GTCCTTGCTGGGGTTGCTCT+TGG - contig480end:29441-29460 MsG0080048845.01.T01:intron 60.0%
TCGGTCTTGGCGGTCGGAAT+CGG + contig480end:27747-27766 MsG0080048845.01.T01:intergenic 60.0%
! CACGGCCTTTTCCGCGTTAG+AGG - contig480end:30798-30817 MsG0080048845.01.T01:intron 60.0%
! GAGTGGTGGGACCTATGTGC+TGG - contig480end:30023-30042 MsG0080048845.01.T01:intron 60.0%
!!! GACGGGGGAGGTGCCTTTTA+TGG - contig480end:31544-31563 MsG0080048845.01.T01:CDS 60.0%
CCTTGAAGGCGGGGAGTGGT+GGG - contig480end:30010-30029 MsG0080048845.01.T01:intron 65.0%
CGTCGGGATCATAGGCGCCT+AGG - contig480end:30221-30240 MsG0080048845.01.T01:CDS 65.0%
TCCTTGAAGGCGGGGAGTGG+TGG - contig480end:30009-30028 MsG0080048845.01.T01:intron 65.0%
TTGGGAAGGGCTCGTGGCGA+CGG + contig480end:27711-27730 MsG0080048845.01.T01:intergenic 65.0%
AATCGGAGACCGCGGCGGGT+TGG + contig480end:27730-27749 MsG0080048845.01.T01:intergenic 70.0%
CCCACCACTCCCCGCCTTCA+AGG + contig480end:30013-30032 MsG0080048845.01.T01:intergenic 70.0%
GCGGTCGGAATCGGAGACCG+CGG + contig480end:27738-27757 MsG0080048845.01.T01:intergenic 70.0%
GTCGGAATCGGAGACCGCGG+CGG + contig480end:27735-27754 MsG0080048845.01.T01:intergenic 70.0%
TCGGAATCGGAGACCGCGGC+GGG + contig480end:27734-27753 MsG0080048845.01.T01:intergenic 70.0%
! ATCGGAGACCGCGGCGGGTT+GGG + contig480end:27729-27748 MsG0080048845.01.T01:intergenic 70.0%
!! AGACCGCGGCGGGTTGGGAA+GGG + contig480end:27724-27743 MsG0080048845.01.T01:intergenic 70.0%
GAGCCCTTCCCAACCCGCCG+CGG - contig480end:27718-27737 MsG0080048845.01.T01:CDS 75.0%
GCTCGTGGCGACGGCGAGAG+TGG + contig480end:27702-27721 MsG0080048845.01.T01:intergenic 75.0%
!! GAGACCGCGGCGGGTTGGGA+AGG + contig480end:27725-27744 MsG0080048845.01.T01:intergenic 75.0%
!! GGCGGGTTGGGAAGGGCTCG+TGG + contig480end:27717-27736 MsG0080048845.01.T01:intergenic 75.0%
Chromosome Type Strat End Strand Name
contig480end gene 27554 31642 27554 ID=MsG0080048845.01;
contig480end mRNA 27554 31642 27554 ID=MsG0080048845.01.T01;Parent=MsG0080048845.01
contig480end CDS 27554 27874 27554 ID=MsG0080048845.01.T01.cds;Parent=MsG0080048845.01.T01
contig480end CDS 28366 28743 28366 ID=MsG0080048845.01.T01.cds;Parent=MsG0080048845.01.T01
contig480end CDS 28925 29178 28925 ID=MsG0080048845.01.T01.cds;Parent=MsG0080048845.01.T01
contig480end CDS 30131 30278 30131 ID=MsG0080048845.01.T01.cds;Parent=MsG0080048845.01.T01
contig480end CDS 30388 30534 30388 ID=MsG0080048845.01.T01.cds;Parent=MsG0080048845.01.T01
contig480end CDS 31376 31642 31376 ID=MsG0080048845.01.T01.cds;Parent=MsG0080048845.01.T01
Gene Sequence

>MsG0080048845.01.T01

ATGGCTTCTACTCTTTTCACCGTTCCCATGGCTACAACACTTTCATCTTCCATTCATTTCCTTAAACTCCACACCCCTCTTTCTTTTTCTTTTCCTTTTCGTTCTCTTCGTTCTCCAACTCCATCCTTCTTCACCAGGAAATTCTCCACTCTCGCCGTCGCCACGAGCCCTTCCCAACCCGCCGCGGTCTCCGATTCCGACCGCCAAGACCGAATTGTTCTCCCTACTAATGAATCGTCCAACACCCTTCTCAGAATTCGTCACACGTGTGCGCATGTGATGGCAATGGCCGTTCAAAAGCTTTACCCTCAAGCAAAAGTCACAATCGGGCCTTGGATAGAAAATGGGTTTTATTATGACTTTGATATGGAGCCTTTGACAGATAAAGATTTGAAGAGAATCAAGAAAGAGATGGATCGAATTATTAGCAAAAATTTACCCCTTGTAAGAGAAGAAGTTTCAAGAGATGAAGCTCATAGAAGAATATTGGCTTTGAATGAACCATACAAGATGGAGATTTTGGAAGGCATTAAGGAAGAACCCATCACAATTTATCATATTGGCGGGGAGTGGTGGGACCTATGTGCTGGACCTCATGTTGAATCTACTGGAAATATCAAAAGAAATGCCGTTGAACTTGAGTCTATTGCTGGTGCTTACTGGAGAGGAGATGAAAAGAAACCAATGCTGCAAAGGATATACGGTACTGCATGGGAGACTGAAGAGCAGTTGAAAGCGTATCTTCATTTCAAAGAAGAAGCTAAACGTCGGGATCATAGGCGCCTAGGACAAGATCTTGATTTGTTTTCTTTACAGGAGGATGCTGGTGGGGGTTTAGTTTTCTGGCACCCAAAGGGTGCTATTGTGAGACACATAATTGAAGATTTTTGGAAAAAAGTTCACATAGAACGTGGTTATGATCTATTGTATACACCACATGTGGCAAAAGCTGATCTTTGGAAGATCAGTGGTCATTTGGACTTTTACAAGGAAAATATGTATGATCAGATGAGCATCGAAGATGAGCGTTATCAACTTCGACCAATGAATTGTCCTTATCATATTTTGGTATACAAAAGGAAGCGTCATTCCTATCGGGATTTTCCTGTTAGGGTAGCAGAATTAGGTACTGTTTATAGATATGAACTGTCTGGAAGTTTACACGGCCTTTTCCGCGTTAGAGGTTTCACACAGGATGATGCACACATATTTTGTTTAGAGGACCAGATTAAAGATGAGATCAGGGGTGTCCTGGATCTTACCGAAGAAACATTATCGCAATTTGGTTTTGATAAATATGAGATAAATTTATCTACACGGCCTGAAAAATCTGTCGGAGAAGATGATATATGGGAGAAAGCTACCTCAGCTTTAAAAGATGCTTTGGATGATAAAGGCTGGACCTATCAAATTGATGACGGGGGAGGTGCCTTTTATGGGCCAAAGATAGATGTCAAGATTGAGGATGCTCTTGGGAGAAAGTGGCAGTGTTCAACCATACAGGCAATTCCTTAA

Protein sequence

>MsG0080048845.01.T01

MASTLFTVPMATTLSSSIHFLKLHTPLSFSFPFRSLRSPTPSFFTRKFSTLAVATSPSQPAAVSDSDRQDRIVLPTNESSNTLLRIRHTCAHVMAMAVQKLYPQAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIISKNLPLVREEVSRDEAHRRILALNEPYKMEILEGIKEEPITIYHIGGEWWDLCAGPHVESTGNIKRNAVELESIAGAYWRGDEKKPMLQRIYGTAWETEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSLQEDAGGGLVFWHPKGAIVRHIIEDFWKKVHIERGYDLLYTPHVAKADLWKISGHLDFYKENMYDQMSIEDERYQLRPMNCPYHILVYKRKRHSYRDFPVRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEETLSQFGFDKYEINLSTRPEKSVGEDDIWEKATSALKDALDDKGWTYQIDDGGGAFYGPKIDVKIEDALGRKWQCSTIQAIP*