Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048598.01.T01 | XP_003623314.1 | 97.17 | 530 | 13 | 1 | 7 | 534 | 29 | 558 | 0 | 1045 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048598.01.T01 | Q9SR96 | 56.673 | 547 | 215 | 6 | 7 | 534 | 29 | 572 | 0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048598.01.T01 | G7KSB1 | 97.170 | 530 | 13 | 1 | 7 | 534 | 29 | 558 | 0.0 | 1045 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048598.01 | MsG0480023720.01 | 0.806697 | 7.252051e-50 | 3.962329e-47 |
| MsG0080048598.01 | MsG0580026069.01 | 0.806957 | 6.391829e-50 | 3.515850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048598.01.T01 | MTR_7g069480 | 97.170 | 530 | 13 | 1 | 7 | 534 | 29 | 558 | 0.0 | 1045 |
| MsG0080048598.01.T01 | MTR_7g069480 | 96.038 | 530 | 13 | 2 | 7 | 534 | 29 | 552 | 0.0 | 1026 |
| MsG0080048598.01.T01 | MTR_3g087030 | 55.385 | 65 | 29 | 0 | 6 | 70 | 83 | 147 | 4.28e-17 | 84.3 |
| MsG0080048598.01.T01 | MTR_2g104030 | 55.224 | 67 | 30 | 0 | 4 | 70 | 69 | 135 | 5.44e-17 | 84.3 |
| MsG0080048598.01.T01 | MTR_4g078850 | 44.554 | 101 | 45 | 4 | 6 | 95 | 5 | 105 | 5.47e-16 | 79.7 |
| MsG0080048598.01.T01 | MTR_2g014470 | 44.792 | 96 | 47 | 3 | 6 | 95 | 5 | 100 | 7.65e-16 | 79.3 |
| MsG0080048598.01.T01 | MTR_7g109340 | 50.000 | 72 | 35 | 1 | 1 | 71 | 22 | 93 | 7.56e-15 | 76.3 |
| MsG0080048598.01.T01 | MTR_3g108020 | 33.974 | 156 | 88 | 4 | 6 | 155 | 5 | 151 | 9.82e-15 | 75.9 |
| MsG0080048598.01.T01 | MTR_2g090705 | 28.302 | 265 | 159 | 10 | 6 | 256 | 5 | 252 | 1.30e-14 | 75.5 |
| MsG0080048598.01.T01 | MTR_2g436580 | 52.459 | 61 | 29 | 0 | 6 | 66 | 111 | 171 | 2.22e-14 | 73.2 |
| MsG0080048598.01.T01 | MTR_2g097690 | 34.211 | 152 | 72 | 4 | 7 | 158 | 77 | 200 | 2.25e-14 | 73.9 |
| MsG0080048598.01.T01 | MTR_4g015840 | 47.059 | 68 | 34 | 1 | 6 | 71 | 5 | 72 | 1.18e-13 | 72.8 |
| MsG0080048598.01.T01 | MTR_1g052110 | 53.846 | 65 | 29 | 1 | 6 | 69 | 39 | 103 | 1.72e-13 | 71.6 |
| MsG0080048598.01.T01 | MTR_2g014480 | 49.254 | 67 | 32 | 1 | 6 | 70 | 5 | 71 | 1.83e-13 | 72.0 |
| MsG0080048598.01.T01 | MTR_2g097690 | 53.333 | 60 | 28 | 0 | 7 | 66 | 77 | 136 | 4.96e-13 | 68.6 |
| MsG0080048598.01.T01 | MTR_7g092380 | 53.846 | 65 | 29 | 1 | 6 | 69 | 23 | 87 | 5.74e-13 | 69.7 |
| MsG0080048598.01.T01 | MTR_2g436560 | 49.206 | 63 | 32 | 0 | 4 | 66 | 103 | 165 | 6.61e-13 | 70.5 |
| MsG0080048598.01.T01 | MTR_5g065160 | 53.226 | 62 | 28 | 1 | 6 | 66 | 84 | 145 | 8.63e-13 | 70.9 |
| MsG0080048598.01.T01 | MTR_5g065160 | 53.226 | 62 | 28 | 1 | 6 | 66 | 83 | 144 | 9.34e-13 | 70.9 |
| MsG0080048598.01.T01 | MTR_5g065160 | 53.226 | 62 | 28 | 1 | 6 | 66 | 84 | 145 | 9.38e-13 | 70.9 |
| MsG0080048598.01.T01 | MTR_5g065160 | 53.226 | 62 | 28 | 1 | 6 | 66 | 77 | 138 | 9.56e-13 | 70.9 |
| MsG0080048598.01.T01 | MTR_1g105540 | 53.333 | 60 | 28 | 0 | 7 | 66 | 37 | 96 | 1.11e-12 | 69.3 |
| MsG0080048598.01.T01 | MTR_3g027580 | 49.254 | 67 | 33 | 1 | 6 | 71 | 90 | 156 | 1.98e-12 | 69.7 |
| MsG0080048598.01.T01 | MTR_8g006430 | 42.169 | 83 | 45 | 1 | 6 | 88 | 15 | 94 | 2.70e-12 | 69.3 |
| MsG0080048598.01.T01 | MTR_7g101070 | 52.381 | 63 | 28 | 1 | 6 | 66 | 359 | 421 | 3.36e-12 | 68.9 |
| MsG0080048598.01.T01 | MTR_2g044580 | 40.741 | 81 | 45 | 2 | 3 | 80 | 95 | 175 | 8.97e-12 | 68.2 |
| MsG0080048598.01.T01 | MTR_1g110310 | 47.297 | 74 | 31 | 2 | 7 | 79 | 18 | 84 | 3.05e-11 | 65.9 |
| MsG0080048598.01.T01 | MTR_6g027110 | 41.558 | 77 | 38 | 2 | 7 | 77 | 4 | 79 | 6.03e-11 | 60.8 |
| MsG0080048598.01.T01 | MTR_6g027030 | 41.558 | 77 | 38 | 2 | 7 | 77 | 4 | 79 | 7.82e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048598.01.T01 | AT3G08970 | 56.673 | 547 | 215 | 6 | 7 | 534 | 29 | 572 | 0.0 | 590 |
| MsG0080048598.01.T01 | AT3G08970 | 56.673 | 547 | 215 | 6 | 7 | 534 | 29 | 572 | 0.0 | 590 |
| MsG0080048598.01.T01 | AT5G25530 | 40.833 | 120 | 69 | 1 | 6 | 123 | 5 | 124 | 3.39e-19 | 89.4 |
| MsG0080048598.01.T01 | AT4G39960 | 54.217 | 83 | 37 | 1 | 6 | 88 | 86 | 167 | 7.26e-19 | 89.7 |
| MsG0080048598.01.T01 | AT4G39960 | 54.217 | 83 | 37 | 1 | 6 | 88 | 86 | 167 | 7.26e-19 | 89.7 |
| MsG0080048598.01.T01 | AT2G22360 | 53.247 | 77 | 34 | 1 | 6 | 80 | 87 | 163 | 7.37e-18 | 86.7 |
| MsG0080048598.01.T01 | AT1G80030 | 58.462 | 65 | 27 | 0 | 6 | 70 | 76 | 140 | 1.63e-17 | 85.9 |
| MsG0080048598.01.T01 | AT1G80030 | 58.462 | 65 | 27 | 0 | 6 | 70 | 76 | 140 | 1.67e-17 | 85.9 |
| MsG0080048598.01.T01 | AT1G80030 | 58.462 | 65 | 27 | 0 | 6 | 70 | 76 | 140 | 1.67e-17 | 85.9 |
| MsG0080048598.01.T01 | AT1G80030 | 58.462 | 65 | 27 | 0 | 6 | 70 | 76 | 140 | 1.67e-17 | 85.9 |
| MsG0080048598.01.T01 | AT5G25530 | 38.281 | 128 | 69 | 2 | 6 | 123 | 5 | 132 | 1.01e-16 | 82.0 |
| MsG0080048598.01.T01 | AT2G20560 | 46.939 | 98 | 44 | 4 | 6 | 95 | 5 | 102 | 1.44e-16 | 81.6 |
| MsG0080048598.01.T01 | AT3G62600 | 56.716 | 67 | 28 | 1 | 6 | 71 | 27 | 93 | 4.31e-16 | 80.1 |
| MsG0080048598.01.T01 | AT5G01390 | 52.941 | 68 | 30 | 1 | 6 | 71 | 5 | 72 | 1.04e-15 | 77.4 |
| MsG0080048598.01.T01 | AT5G01390 | 52.113 | 71 | 32 | 1 | 6 | 74 | 5 | 75 | 2.05e-15 | 76.3 |
| MsG0080048598.01.T01 | AT5G01390 | 52.941 | 68 | 30 | 1 | 6 | 71 | 5 | 72 | 2.16e-15 | 77.0 |
| MsG0080048598.01.T01 | AT4G28480 | 52.055 | 73 | 31 | 2 | 6 | 74 | 5 | 77 | 2.51e-15 | 77.0 |
| MsG0080048598.01.T01 | AT5G01390 | 52.941 | 68 | 30 | 1 | 6 | 71 | 5 | 72 | 3.98e-15 | 77.0 |
| MsG0080048598.01.T01 | AT4G28480 | 52.055 | 73 | 31 | 2 | 6 | 74 | 5 | 77 | 4.06e-15 | 77.4 |
| MsG0080048598.01.T01 | AT3G17830 | 45.679 | 81 | 36 | 1 | 7 | 87 | 65 | 137 | 7.63e-15 | 77.8 |
| MsG0080048598.01.T01 | AT3G08910 | 38.235 | 136 | 73 | 4 | 6 | 133 | 5 | 137 | 9.43e-15 | 75.9 |
| MsG0080048598.01.T01 | AT1G10350 | 28.777 | 139 | 77 | 4 | 6 | 142 | 5 | 123 | 3.30e-13 | 71.6 |
| MsG0080048598.01.T01 | AT5G05750 | 33.594 | 128 | 70 | 3 | 6 | 121 | 115 | 239 | 3.99e-13 | 70.5 |
| MsG0080048598.01.T01 | AT3G12170 | 53.846 | 65 | 29 | 1 | 6 | 69 | 12 | 76 | 4.15e-13 | 70.1 |
| MsG0080048598.01.T01 | AT5G06910 | 48.649 | 74 | 35 | 2 | 6 | 76 | 30 | 103 | 5.66e-13 | 70.1 |
| MsG0080048598.01.T01 | AT3G12170 | 53.846 | 65 | 29 | 1 | 6 | 69 | 48 | 112 | 7.45e-13 | 69.7 |
| MsG0080048598.01.T01 | AT3G47940 | 43.478 | 69 | 36 | 1 | 6 | 71 | 5 | 73 | 1.33e-12 | 69.7 |
| MsG0080048598.01.T01 | AT1G59725 | 43.478 | 69 | 36 | 1 | 6 | 71 | 5 | 73 | 2.08e-12 | 68.9 |
| MsG0080048598.01.T01 | AT3G57340 | 36.782 | 87 | 50 | 2 | 6 | 92 | 114 | 195 | 5.53e-12 | 67.8 |
| MsG0080048598.01.T01 | AT3G57340 | 36.782 | 87 | 50 | 2 | 6 | 92 | 114 | 195 | 5.53e-12 | 67.8 |
| MsG0080048598.01.T01 | AT5G49060 | 46.875 | 64 | 34 | 0 | 6 | 69 | 100 | 163 | 6.23e-12 | 67.8 |
| MsG0080048598.01.T01 | AT5G49060 | 46.875 | 64 | 34 | 0 | 6 | 69 | 100 | 163 | 6.23e-12 | 67.8 |
| MsG0080048598.01.T01 | AT2G35720 | 46.835 | 79 | 38 | 1 | 6 | 80 | 16 | 94 | 1.03e-11 | 67.8 |
| MsG0080048598.01.T01 | AT2G41000 | 34.444 | 90 | 53 | 1 | 7 | 90 | 5 | 94 | 1.08e-11 | 65.1 |
| MsG0080048598.01.T01 | AT5G59610 | 47.458 | 59 | 31 | 0 | 7 | 65 | 75 | 133 | 1.76e-11 | 65.1 |
| MsG0080048598.01.T01 | AT1G79940 | 40.000 | 75 | 44 | 1 | 7 | 80 | 101 | 175 | 2.34e-11 | 66.6 |
| MsG0080048598.01.T01 | AT1G79940 | 40.000 | 75 | 44 | 1 | 7 | 80 | 101 | 175 | 2.41e-11 | 67.0 |
| MsG0080048598.01.T01 | AT1G79940 | 40.000 | 75 | 44 | 1 | 7 | 80 | 101 | 175 | 2.41e-11 | 67.0 |
| MsG0080048598.01.T01 | AT1G79940 | 40.000 | 75 | 44 | 1 | 7 | 80 | 101 | 175 | 2.41e-11 | 67.0 |
| MsG0080048598.01.T01 | AT5G59610 | 29.605 | 152 | 81 | 3 | 7 | 158 | 75 | 200 | 2.98e-11 | 64.7 |
| MsG0080048598.01.T01 | AT5G59610 | 29.605 | 152 | 81 | 3 | 7 | 158 | 75 | 200 | 2.98e-11 | 64.7 |
| MsG0080048598.01.T01 | AT5G59610 | 47.458 | 59 | 31 | 0 | 7 | 65 | 75 | 133 | 3.18e-11 | 64.7 |
| MsG0080048598.01.T01 | AT5G59610 | 47.458 | 59 | 31 | 0 | 7 | 65 | 75 | 133 | 3.18e-11 | 64.7 |
| MsG0080048598.01.T01 | AT1G68370 | 47.297 | 74 | 31 | 2 | 7 | 79 | 19 | 85 | 4.11e-11 | 65.5 |
| MsG0080048598.01.T01 | AT5G03160 | 49.206 | 63 | 30 | 1 | 6 | 66 | 371 | 433 | 4.85e-11 | 65.5 |
| MsG0080048598.01.T01 | AT4G21180 | 41.333 | 75 | 43 | 1 | 7 | 80 | 101 | 175 | 7.02e-11 | 65.5 |
| MsG0080048598.01.T01 | AT2G41000 | 34.444 | 90 | 53 | 1 | 7 | 90 | 5 | 94 | 7.63e-11 | 62.0 |
| MsG0080048598.01.T01 | AT1G59980 | 41.429 | 70 | 40 | 1 | 7 | 75 | 25 | 94 | 7.73e-11 | 64.3 |
| MsG0080048598.01.T01 | AT4G21180 | 41.333 | 75 | 43 | 1 | 7 | 80 | 21 | 95 | 8.50e-11 | 65.1 |
Find 134 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTATGTGTTTCCCTAAA+TGG | 0.152263 | contig366end:+23483 | None:intergenic |
| CTTGTAGATATTTGAATTTA+TGG | 0.169499 | contig366end:+25017 | None:intergenic |
| ATAGAGCATTAAGGTATATT+TGG | 0.196698 | contig366end:-23448 | MsG0080048598.01.T01:exon |
| ATTTATGGCCTTAAAACTTT+TGG | 0.220110 | contig366end:+25032 | None:intergenic |
| CAACACTTTGAGTCCATTAT+AGG | 0.240068 | contig366end:-24928 | MsG0080048598.01.T01:CDS |
| TAAGCGGAGATATACCATTT+AGG | 0.240306 | contig366end:-23497 | MsG0080048598.01.T01:CDS |
| GATTGAAGAGTATTAATTAT+AGG | 0.247090 | contig366end:-23125 | MsG0080048598.01.T01:three_prime_UTR |
| TCTGGTGATTCAAATTCTTT+TGG | 0.248938 | contig366end:-25147 | MsG0080048598.01.T01:CDS |
| AGGAAGAATTATGATTTATA+TGG | 0.254952 | contig366end:-25312 | MsG0080048598.01.T01:CDS |
| AAAAGAACACTCCTGTAATT+TGG | 0.262674 | contig366end:-24519 | MsG0080048598.01.T01:CDS |
| CCCTTAGCCTTGTTCTTGTC+AGG | 0.263130 | contig366end:+25741 | None:intergenic |
| AACACATTCAGTTGCTTTCT+CGG | 0.272186 | contig366end:-23947 | MsG0080048598.01.T01:CDS |
| GGGAAATTCACTGTATTTAC+AGG | 0.278143 | contig366end:-23564 | MsG0080048598.01.T01:CDS |
| AAGCGGAGATATACCATTTA+GGG | 0.291674 | contig366end:-23496 | MsG0080048598.01.T01:CDS |
| AACACTTTGAGTCCATTATA+GGG | 0.321085 | contig366end:-24927 | MsG0080048598.01.T01:CDS |
| AGAACTCCAGTATGCGTAAT+TGG | 0.327008 | contig366end:-23897 | MsG0080048598.01.T01:CDS |
| CTAAATGCATTTGACAAAAC+AGG | 0.333414 | contig366end:-23633 | MsG0080048598.01.T01:CDS |
| TTTGGTTTGGATGATCTTCT+TGG | 0.353735 | contig366end:-25123 | MsG0080048598.01.T01:CDS |
| TTGTCTGATCATCAGATAAT+TGG | 0.357946 | contig366end:-23070 | MsG0080048598.01.T01:three_prime_UTR |
| GCTGGTCATCCGGGAGGTTA+TGG | 0.370056 | contig366end:-25261 | MsG0080048598.01.T01:CDS |
| GTCATGAAATGATATGAAAT+AGG | 0.371194 | contig366end:+22986 | None:intergenic |
| CTAAGAACACGCCAAATTAC+AGG | 0.376368 | contig366end:+24508 | None:intergenic |
| GATGCACTTCCAGCTATTGT+AGG | 0.379433 | contig366end:-24134 | MsG0080048598.01.T01:CDS |
| ATCTTATTCACCCTCTTTGA+GGG | 0.379868 | contig366end:-24956 | MsG0080048598.01.T01:CDS |
| AGGTCTCAATCATCTCAATC+TGG | 0.381249 | contig366end:-25069 | MsG0080048598.01.T01:CDS |
| GTATCTTATTCTTATTGAAC+GGG | 0.384749 | contig366end:-23009 | MsG0080048598.01.T01:three_prime_UTR |
| CAGCTTGTTCTTTCTTAGAC+TGG | 0.385709 | contig366end:+23982 | None:intergenic |
| ATCATCAGATAATTGGTAAT+AGG | 0.388626 | contig366end:-23063 | MsG0080048598.01.T01:three_prime_UTR |
| CCTTGCTTTGGAAGATCTAA+AGG | 0.391551 | contig366end:+23872 | None:intergenic |
| TTACCCCATTGTTGTTCCCC+TGG | 0.394375 | contig366end:+25213 | None:intergenic |
| TTTCCCTTTCCGAGGTTTGT+AGG | 0.394549 | contig366end:+23581 | None:intergenic |
| GTAATTTGGCGTGTTCTTAG+TGG | 0.398833 | contig366end:-24505 | MsG0080048598.01.T01:CDS |
| TATCTTATTCACCCTCTTTG+AGG | 0.400350 | contig366end:-24957 | MsG0080048598.01.T01:CDS |
| TGTACTCAAATAGAGCATTA+AGG | 0.401998 | contig366end:-23457 | MsG0080048598.01.T01:exon |
| CTAGAGCTGCCGCTTCCATT+TGG | 0.402135 | contig366end:+23705 | None:intergenic |
| AGAGCCGCCGCCAAAGGAAA+AGG | 0.403748 | contig366end:+25167 | None:intergenic |
| TCAAACTTTGAGGCTCTTTG+TGG | 0.404129 | contig366end:-23924 | MsG0080048598.01.T01:CDS |
| TGTATCATATGTACTCTTGT+TGG | 0.405045 | contig366end:+23364 | None:intergenic |
| TGGATTTGAAGCTGGTCATC+CGG | 0.406744 | contig366end:-25271 | MsG0080048598.01.T01:CDS |
| ACCAGCAACCTCCCCTATAA+TGG | 0.410147 | contig366end:+24915 | None:intergenic |
| TACACTGCAAGGAGCTTTGA+AGG | 0.416754 | contig366end:-24893 | MsG0080048598.01.T01:intron |
| ATCTAACAGACCATAGGAAA+TGG | 0.419835 | contig366end:+23677 | None:intergenic |
| CAAATGGAAGCGGCAGCTCT+AGG | 0.421742 | contig366end:-23704 | MsG0080048598.01.T01:CDS |
| GCTTTCTCGGTCAAACTTTG+AGG | 0.426568 | contig366end:-23934 | MsG0080048598.01.T01:CDS |
| CAGACCAGGGGAACAACAAT+GGG | 0.426872 | contig366end:-25217 | MsG0080048598.01.T01:CDS |
| CAAACTTTGAGGCTCTTTGT+GGG | 0.430001 | contig366end:-23923 | MsG0080048598.01.T01:CDS |
| TTCTTACAAGGAAAATGAAA+AGG | 0.436187 | contig366end:-24698 | MsG0080048598.01.T01:CDS |
| AAGGCACCAATTACGCATAC+TGG | 0.438364 | contig366end:+23891 | None:intergenic |
| TACCAATGCACAAAATTAGT+TGG | 0.442102 | contig366end:+23294 | None:intergenic |
| AAGTTTGCTCAGATAAATAA+TGG | 0.444421 | contig366end:-25708 | MsG0080048598.01.T01:intron |
| CCGGGAGGTTATGGTGGTCC+TGG | 0.445625 | contig366end:-25252 | MsG0080048598.01.T01:CDS |
| TTTGTCAAATGCATTTAGAA+AGG | 0.446085 | contig366end:+23638 | None:intergenic |
| TCTGTAAAAGATGTAAAATC+TGG | 0.447024 | contig366end:-24068 | MsG0080048598.01.T01:CDS |
| TTAATGCTCTATTTGAGTAC+AGG | 0.455543 | contig366end:+23459 | None:intergenic |
| GGAAAATGAAAAGGGTTCTC+TGG | 0.457345 | contig366end:-24689 | MsG0080048598.01.T01:CDS |
| GGAACAACAATGGGGTAACC+AGG | 0.458050 | contig366end:-25208 | MsG0080048598.01.T01:CDS |
| GGTCGAGTACGGCGGTGACT+TGG | 0.464191 | contig366end:-24668 | MsG0080048598.01.T01:CDS |
| GCTAGAATCACTTCTCACTT+TGG | 0.471450 | contig366end:-23844 | MsG0080048598.01.T01:intron |
| TCCATTATAGGGGAGGTTGC+TGG | 0.471727 | contig366end:-24916 | MsG0080048598.01.T01:CDS |
| GGTAGCCAACCTACAATAGC+TGG | 0.471925 | contig366end:+24125 | None:intergenic |
| TTCCTTGTTAATTCATGAGA+TGG | 0.474912 | contig366end:+23101 | None:intergenic |
| GGATGACCAGCTTCAAATCC+AGG | 0.477797 | contig366end:+25273 | None:intergenic |
| TGCAAAACACCAAGGTTTGT+AGG | 0.486752 | contig366end:+23422 | None:intergenic |
| CCTTAGCCTTGTTCTTGTCA+GGG | 0.490496 | contig366end:+25742 | None:intergenic |
| TGTATCTTATTCTTATTGAA+CGG | 0.491795 | contig366end:-23010 | MsG0080048598.01.T01:three_prime_UTR |
| GATTTATATGGAGATGAGAA+AGG | 0.496080 | contig366end:-25300 | MsG0080048598.01.T01:CDS |
| GATTCGAGAGTGAGAAAGCT+AGG | 0.497255 | contig366end:-24161 | MsG0080048598.01.T01:CDS |
| TCTTACAAGGAAAATGAAAA+GGG | 0.501980 | contig366end:-24697 | MsG0080048598.01.T01:CDS |
| ATTGTAGGTTGGCTACCTAA+TGG | 0.504995 | contig366end:-24119 | MsG0080048598.01.T01:CDS |
| TGGAAGCATTAACTGTGAAA+AGG | 0.505775 | contig366end:-24782 | MsG0080048598.01.T01:CDS |
| CGGCGGTGACTTGGCTGTCA+AGG | 0.512307 | contig366end:-24659 | MsG0080048598.01.T01:CDS |
| CACTTCCAGCTATTGTAGGT+TGG | 0.512519 | contig366end:-24130 | MsG0080048598.01.T01:CDS |
| AAATGGAAGCGGCAGCTCTA+GGG | 0.516656 | contig366end:-23703 | MsG0080048598.01.T01:CDS |
| CATTGCCTTCAGTGATGTAC+AGG | 0.517426 | contig366end:-24467 | MsG0080048598.01.T01:intron |
| TCTAGGGACTCCATTTCCTA+TGG | 0.523006 | contig366end:-23687 | MsG0080048598.01.T01:CDS |
| AAAGGAAGTCTCATTCTGTA+AGG | 0.525693 | contig366end:-24764 | MsG0080048598.01.T01:CDS |
| AAGAAAGAAATAGTTGATGA+AGG | 0.528006 | contig366end:-24997 | MsG0080048598.01.T01:CDS |
| GTTGAGAGAAGCAGCACCCT+AGG | 0.530951 | contig366end:+24544 | None:intergenic |
| ATTTGGTTACCTACAAACCT+TGG | 0.531218 | contig366end:-23431 | MsG0080048598.01.T01:three_prime_UTR |
| TTGCCTACAAACCTCGGAAA+GGG | 0.533121 | contig366end:-23584 | MsG0080048598.01.T01:CDS |
| GGAAACCCTGGATTTGAAGC+TGG | 0.537781 | contig366end:-25279 | MsG0080048598.01.T01:CDS |
| GGTCTCAATCATCTCAATCT+GGG | 0.540073 | contig366end:-25068 | MsG0080048598.01.T01:CDS |
| TACAGGTGAAATGACAATAG+AGG | 0.544357 | contig366end:-23547 | MsG0080048598.01.T01:CDS |
| TCCTTGTCAAGAAAACCAAA+TGG | 0.544854 | contig366end:-23720 | MsG0080048598.01.T01:CDS |
| CTATAATGGACTCAAAGTGT+TGG | 0.546531 | contig366end:+24929 | None:intergenic |
| GGATTTGAAGCTGGTCATCC+GGG | 0.546824 | contig366end:-25270 | MsG0080048598.01.T01:CDS |
| AAGGGTTCTCTGGTCGAGTA+CGG | 0.551754 | contig366end:-24679 | MsG0080048598.01.T01:CDS |
| TCTTATTCACCCTCTTTGAG+GGG | 0.552771 | contig366end:-24955 | MsG0080048598.01.T01:CDS |
| TATTGATTGCCTACAAACCT+CGG | 0.555595 | contig366end:-23590 | MsG0080048598.01.T01:CDS |
| AGAATGACTTAGAGCCTCCC+TGG | 0.555880 | contig366end:+25190 | None:intergenic |
| GTCTCATTCTGTAAGGAGCT+CGG | 0.559611 | contig366end:-24757 | MsG0080048598.01.T01:CDS |
| CCTTTAGATCTTCCAAAGCA+AGG | 0.562071 | contig366end:-23872 | MsG0080048598.01.T01:CDS |
| CTTTAGATCTTCCAAAGCAA+GGG | 0.565533 | contig366end:-23871 | MsG0080048598.01.T01:CDS |
| CTTTGAGTCCATTATAGGGG+AGG | 0.569961 | contig366end:-24923 | MsG0080048598.01.T01:CDS |
| GGAGGTTATGGTGGTCCTGG+TGG | 0.572253 | contig366end:-25249 | MsG0080048598.01.T01:CDS |
| TGTTGGATGCCCCTCAAAGA+GGG | 0.575397 | contig366end:+24946 | None:intergenic |
| TCAGACCAGGGGAACAACAA+TGG | 0.575494 | contig366end:-25218 | MsG0080048598.01.T01:CDS |
| CACTGCTGAAAAGTTACCTA+GGG | 0.576457 | contig366end:-24560 | MsG0080048598.01.T01:CDS |
| GCACTGCTGAAAAGTTACCT+AGG | 0.578112 | contig366end:-24561 | MsG0080048598.01.T01:CDS |
| GGTGGATTTAACTTCAGACC+AGG | 0.582161 | contig366end:-25231 | MsG0080048598.01.T01:CDS |
| GGAGATGAGAAAGGAAACCC+TGG | 0.582670 | contig366end:-25291 | MsG0080048598.01.T01:CDS |
| CCCTGACAAGAACAAGGCTA+AGG | 0.583292 | contig366end:-25742 | MsG0080048598.01.T01:CDS |
| TGAAGAATCTAACAGACCAT+AGG | 0.584940 | contig366end:+23671 | None:intergenic |
| TCAAGAAAACCAAATGGAAG+CGG | 0.585318 | contig366end:-23714 | MsG0080048598.01.T01:CDS |
| ATCACCAGAGCCGCCGCCAA+AGG | 0.586364 | contig366end:+25161 | None:intergenic |
| AAACTTTGAGGCTCTTTGTG+GGG | 0.588840 | contig366end:-23922 | MsG0080048598.01.T01:CDS |
| CCAGGACCACCATAACCTCC+CGG | 0.595008 | contig366end:+25252 | None:intergenic |
| ACAGTGAATTTCCCTTTCCG+AGG | 0.599381 | contig366end:+23573 | None:intergenic |
| GAGGTTGCTGGTACACTGCA+AGG | 0.600210 | contig366end:-24904 | MsG0080048598.01.T01:CDS |
| TGGTATATCTCCGCTTAGAA+CGG | 0.601976 | contig366end:+23503 | None:intergenic |
| ATTGCCTACAAACCTCGGAA+AGG | 0.606305 | contig366end:-23585 | MsG0080048598.01.T01:CDS |
| CTTATATCTGCAAAACACCA+AGG | 0.610610 | contig366end:+23414 | None:intergenic |
| AAAAGCCTTGGAGCTTTGCG+CGG | 0.611357 | contig366end:+24727 | None:intergenic |
| GGTCATCCGGGAGGTTATGG+TGG | 0.611379 | contig366end:-25258 | MsG0080048598.01.T01:CDS |
| TATATCCGCGCAAAGCTCCA+AGG | 0.612102 | contig366end:-24732 | MsG0080048598.01.T01:CDS |
| GCATACCTGTACATCACTGA+AGG | 0.621284 | contig366end:+24462 | None:intergenic |
| ACACTTTGAGTCCATTATAG+GGG | 0.621315 | contig366end:-24926 | MsG0080048598.01.T01:CDS |
| CCTGACAAGAACAAGGCTAA+GGG | 0.624057 | contig366end:-25741 | MsG0080048598.01.T01:CDS |
| GATGACCAGCTTCAAATCCA+GGG | 0.625923 | contig366end:+25274 | None:intergenic |
| GAACAACAATGGGGTAACCA+GGG | 0.633630 | contig366end:-25207 | MsG0080048598.01.T01:CDS |
| GTGGATTTAACTTCAGACCA+GGG | 0.636460 | contig366end:-25230 | MsG0080048598.01.T01:CDS |
| GTGTTGGATGCCCCTCAAAG+AGG | 0.638891 | contig366end:+24945 | None:intergenic |
| AAAACTTATTCTGAAAACAG+GGG | 0.643772 | contig366end:-24093 | MsG0080048598.01.T01:CDS |
| GACCATCTCATGAATTAACA+AGG | 0.647077 | contig366end:-23103 | MsG0080048598.01.T01:three_prime_UTR |
| GGTCTGAAGTTAAATCCACC+AGG | 0.648334 | contig366end:+25234 | None:intergenic |
| TTTATCAGCTCCGTTCTAAG+CGG | 0.648770 | contig366end:-23513 | MsG0080048598.01.T01:CDS |
| ATATCACCCTGACAAGAACA+AGG | 0.649669 | contig366end:-25748 | MsG0080048598.01.T01:CDS |
| CAACAATGGGGTAACCAGGG+AGG | 0.659802 | contig366end:-25204 | MsG0080048598.01.T01:CDS |
| AAGTCAACGAGAAATTCAGA+AGG | 0.680585 | contig366end:-25885 | MsG0080048598.01.T01:CDS |
| TGGATTTAACTTCAGACCAG+GGG | 0.681095 | contig366end:-25229 | MsG0080048598.01.T01:CDS |
| GGTTCTCTGGTCGAGTACGG+CGG | 0.695617 | contig366end:-24676 | MsG0080048598.01.T01:CDS |
| TTTGAAGCTGGTCATCCGGG+AGG | 0.700469 | contig366end:-25267 | MsG0080048598.01.T01:CDS |
| TAGTTGATGAAGGAATGACT+TGG | 0.720265 | contig366end:-24987 | MsG0080048598.01.T01:CDS |
| AGACCAGGGGAACAACAATG+GGG | 0.745284 | contig366end:-25216 | MsG0080048598.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAACAATATATATA+AGG | + | contig366end:23145-23164 | None:intergenic | 10.0% |
| !! | AAGATTATAAACATATATGA+TGG | + | contig366end:24616-24635 | None:intergenic | 15.0% |
| !!! | AGTAATATTGTTTTAATTAG+AGG | - | contig366end:25896-25915 | MsG0080048598.01.T01:CDS | 15.0% |
| !! | AGGAAGAATTATGATTTATA+TGG | - | contig366end:23617-23636 | MsG0080048598.01.T01:CDS | 20.0% |
| !! | AGTAACTTATTATACTACTA+AGG | + | contig366end:23494-23513 | None:intergenic | 20.0% |
| !! | CTTGTAGATATTTGAATTTA+TGG | + | contig366end:23915-23934 | None:intergenic | 20.0% |
| !! | GTAACTTATTATACTACTAA+GGG | + | contig366end:23493-23512 | None:intergenic | 20.0% |
| !! | TGAAAAGAGTTTATAGAAAT+AGG | + | contig366end:23337-23356 | None:intergenic | 20.0% |
| !! | TGTATCTTATTCTTATTGAA+CGG | - | contig366end:25919-25938 | MsG0080048598.01.T01:CDS | 20.0% |
| !!! | AAAAACTTATTCTGAAAACA+GGG | - | contig366end:24835-24854 | MsG0080048598.01.T01:intron | 20.0% |
| !!! | GATTGAAGAGTATTAATTAT+AGG | - | contig366end:25804-25823 | MsG0080048598.01.T01:intron | 20.0% |
| !!! | GTATATTTCAGATTGTTTTT+TGG | - | contig366end:24659-24678 | MsG0080048598.01.T01:CDS | 20.0% |
| !!! | TAGTATAATAAGTTACTTTC+TGG | - | contig366end:23497-23516 | MsG0080048598.01.T01:CDS | 20.0% |
| !!! | TTTTGAGAAAGTAAGTAAAA+AGG | - | contig366end:24914-24933 | MsG0080048598.01.T01:CDS | 20.0% |
| ! | ATCTTGTGCAAAATCTTAAA+GGG | - | contig366end:25158-25177 | MsG0080048598.01.T01:CDS | 25.0% |
| ! | GTATCTTATTCTTATTGAAC+GGG | - | contig366end:25920-25939 | MsG0080048598.01.T01:CDS | 25.0% |
| ! | GTGTATCTTGAATTATTTAC+AGG | - | contig366end:24731-24750 | MsG0080048598.01.T01:CDS | 25.0% |
| ! | TAAGAATAAACAAAAAGCCT+TGG | + | contig366end:24217-24236 | None:intergenic | 25.0% |
| ! | TATCTTGTGCAAAATCTTAA+AGG | - | contig366end:25157-25176 | MsG0080048598.01.T01:CDS | 25.0% |
| ! | TCTGTAAAAGATGTAAAATC+TGG | - | contig366end:24861-24880 | MsG0080048598.01.T01:intron | 25.0% |
| ! | TCTTACAAGGAAAATGAAAA+GGG | - | contig366end:24232-24251 | MsG0080048598.01.T01:intron | 25.0% |
| ! | TTCTTACAAGGAAAATGAAA+AGG | - | contig366end:24231-24250 | MsG0080048598.01.T01:intron | 25.0% |
| ! | TTTGTCAAATGCATTTAGAA+AGG | + | contig366end:25294-25313 | None:intergenic | 25.0% |
| !! | AAAACTTATTCTGAAAACAG+GGG | - | contig366end:24836-24855 | MsG0080048598.01.T01:intron | 25.0% |
| !! | AAGTTTGCTCAGATAAATAA+TGG | - | contig366end:23221-23240 | MsG0080048598.01.T01:intron | 25.0% |
| !! | AGAATAAGTTTTTCTCCATT+AGG | + | contig366end:24828-24847 | None:intergenic | 25.0% |
| !! | ATAGAGCATTAAGGTATATT+TGG | - | contig366end:25481-25500 | MsG0080048598.01.T01:intron | 25.0% |
| !! | ATCATCAGATAATTGGTAAT+AGG | - | contig366end:25866-25885 | MsG0080048598.01.T01:intron | 25.0% |
| !! | GAAAAACTTATTCTGAAAAC+AGG | - | contig366end:24834-24853 | MsG0080048598.01.T01:intron | 25.0% |
| !! | GATTCAAATTCTTTTGGATT+TGG | - | contig366end:23788-23807 | MsG0080048598.01.T01:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | contig366end:23295-23314 | None:intergenic | 25.0% |
| !! | TTTTATCTGATGAACAAAAG+AGG | - | contig366end:23597-23616 | MsG0080048598.01.T01:CDS | 25.0% |
| !!! | AAATTCTTTTGGATTTGGTT+TGG | - | contig366end:23793-23812 | MsG0080048598.01.T01:intron | 25.0% |
| !!! | AAGAAAGAAATAGTTGATGA+AGG | - | contig366end:23932-23951 | MsG0080048598.01.T01:CDS | 25.0% |
| !!! | AATTTTTTATCAGGTTCTTG+GGG | - | contig366end:23008-23027 | MsG0080048598.01.T01:three_prime_UTR | 25.0% |
| !!! | ATTTATGGCCTTAAAACTTT+TGG | + | contig366end:23900-23919 | None:intergenic | 25.0% |
| !!! | ATTTTAAAGCAGTTGGTTTT+TGG | - | contig366end:25679-25698 | MsG0080048598.01.T01:intron | 25.0% |
| !!! | CAATTTTTTATCAGGTTCTT+GGG | - | contig366end:23007-23026 | MsG0080048598.01.T01:three_prime_UTR | 25.0% |
| !!! | GCACATTTCAATTTTTTATC+AGG | - | contig366end:22999-23018 | MsG0080048598.01.T01:three_prime_UTR | 25.0% |
| !!! | GCTTTTTGTTTATTCTTACA+AGG | - | contig366end:24219-24238 | MsG0080048598.01.T01:intron | 25.0% |
| !!! | TATTTCAGATTGTTTTTTGG+TGG | - | contig366end:24662-24681 | MsG0080048598.01.T01:CDS | 25.0% |
| !!! | TCAATTTTTTATCAGGTTCT+TGG | - | contig366end:23006-23025 | MsG0080048598.01.T01:three_prime_UTR | 25.0% |
| !!! | TCTTTTGATTGTTTTGTAGT+TGG | - | contig366end:24089-24108 | MsG0080048598.01.T01:CDS | 25.0% |
| !!! | TTTATGGCCTTAAAACTTTT+GGG | + | contig366end:23899-23918 | None:intergenic | 25.0% |
| AAAAGAACACTCCTGTAATT+TGG | - | contig366end:24410-24429 | MsG0080048598.01.T01:intron | 30.0% | |
| AACACTTTGAGTCCATTATA+GGG | - | contig366end:24002-24021 | MsG0080048598.01.T01:CDS | 30.0% | |
| ACATCCTAACAACAAGAAAT+AGG | + | contig366end:23529-23548 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | + | contig366end:23457-23476 | None:intergenic | 30.0% | |
| CTAAATGCATTTGACAAAAC+AGG | - | contig366end:25296-25315 | MsG0080048598.01.T01:CDS | 30.0% | |
| GATTTATATGGAGATGAGAA+AGG | - | contig366end:23629-23648 | MsG0080048598.01.T01:CDS | 30.0% | |
| TAAGTAGTCATACACAAGAA+TGG | + | contig366end:25712-25731 | None:intergenic | 30.0% | |
| TACCAATGCACAAAATTAGT+TGG | + | contig366end:25638-25657 | None:intergenic | 30.0% | |
| TAGTTAATTCGTTAGTCACA+TGG | - | contig366end:24569-24588 | MsG0080048598.01.T01:CDS | 30.0% | |
| TGTATCATATGTACTCTTGT+TGG | + | contig366end:25568-25587 | None:intergenic | 30.0% | |
| TTAATGCTCTATTTGAGTAC+AGG | + | contig366end:25473-25492 | None:intergenic | 30.0% | |
| TTCCTTGTTAATTCATGAGA+TGG | + | contig366end:25831-25850 | None:intergenic | 30.0% | |
| TTCTTATGTGTTTCCCTAAA+TGG | + | contig366end:25449-25468 | None:intergenic | 30.0% | |
| TTGTCTGATCATCAGATAAT+TGG | - | contig366end:25859-25878 | MsG0080048598.01.T01:intron | 30.0% | |
| ! | AACCTTTTACACAAAGAACT+AGG | + | contig366end:24540-24559 | None:intergenic | 30.0% |
| ! | ACTCTTTTCATAAGCTATCT+TGG | - | contig366end:23347-23366 | MsG0080048598.01.T01:three_prime_UTR | 30.0% |
| ! | ACTTGCCAATGTTTTCAAAA+CGG | - | contig366end:24317-24336 | MsG0080048598.01.T01:intron | 30.0% |
| ! | ATAAGCATTGCAAGATTGTT+AGG | + | contig366end:23433-23452 | None:intergenic | 30.0% |
| ! | ATCCAACTAATTTTGTGCAT+TGG | - | contig366end:25633-25652 | MsG0080048598.01.T01:intron | 30.0% |
| ! | GTTAAGTTGTTTATCCAAAC+AGG | + | contig366end:23296-23315 | None:intergenic | 30.0% |
| ! | TAAGCATTGCAAGATTGTTA+GGG | + | contig366end:23432-23451 | None:intergenic | 30.0% |
| ! | TCTGGTGATTCAAATTCTTT+TGG | - | contig366end:23782-23801 | MsG0080048598.01.T01:intron | 30.0% |
| ! | TGTACTCAAATAGAGCATTA+AGG | - | contig366end:25472-25491 | MsG0080048598.01.T01:intron | 30.0% |
| !! | TCTACCTATTTCTTGTTGTT+AGG | - | contig366end:23522-23541 | MsG0080048598.01.T01:CDS | 30.0% |
| !! | TTATGGCCTTAAAACTTTTG+GGG | + | contig366end:23898-23917 | None:intergenic | 30.0% |
| !!! | AATTACAGGAGTGTTCTTTT+TGG | + | contig366end:24410-24429 | None:intergenic | 30.0% |
| !!! | CAATGACATTTTAAAGCAGT+TGG | - | contig366end:25672-25691 | MsG0080048598.01.T01:intron | 30.0% |
| !!! | GATCTTCTTGGAAACTTTTT+TGG | - | contig366end:23818-23837 | MsG0080048598.01.T01:intron | 30.0% |
| !!! | GGAAACTTTTTTGGTGATTT+TGG | - | contig366end:23827-23846 | MsG0080048598.01.T01:intron | 30.0% |
| !!! | GTGTCATAAGCTGTTTTTAT+AGG | - | contig366end:23402-23421 | MsG0080048598.01.T01:three_prime_UTR | 30.0% |
| AAAGGAAGTCTCATTCTGTA+AGG | - | contig366end:24165-24184 | MsG0080048598.01.T01:CDS | 35.0% | |
| AAGCGGAGATATACCATTTA+GGG | - | contig366end:25433-25452 | MsG0080048598.01.T01:intron | 35.0% | |
| AAGTCAACGAGAAATTCAGA+AGG | - | contig366end:23044-23063 | MsG0080048598.01.T01:three_prime_UTR | 35.0% | |
| ACAAGTTATCAGAGATAGCT+GGG | + | contig366end:23122-23141 | None:intergenic | 35.0% | |
| ACACTTTGAGTCCATTATAG+GGG | - | contig366end:24003-24022 | MsG0080048598.01.T01:CDS | 35.0% | |
| ATCTAACAGACCATAGGAAA+TGG | + | contig366end:25255-25274 | None:intergenic | 35.0% | |
| ATCTTATTCACCCTCTTTGA+GGG | - | contig366end:23973-23992 | MsG0080048598.01.T01:CDS | 35.0% | |
| ATTTCTTTCTCAGCACATGT+AGG | - | contig366end:24509-24528 | MsG0080048598.01.T01:CDS | 35.0% | |
| ATTTGGTTACCTACAAACCT+TGG | - | contig366end:25498-25517 | MsG0080048598.01.T01:intron | 35.0% | |
| CAACACTTTGAGTCCATTAT+AGG | - | contig366end:24001-24020 | MsG0080048598.01.T01:CDS | 35.0% | |
| CTTATATCTGCAAAACACCA+AGG | + | contig366end:25518-25537 | None:intergenic | 35.0% | |
| CTTTAGATCTTCCAAAGCAA+GGG | - | contig366end:25058-25077 | MsG0080048598.01.T01:CDS | 35.0% | |
| GACCATCTCATGAATTAACA+AGG | - | contig366end:25826-25845 | MsG0080048598.01.T01:intron | 35.0% | |
| GGGAAATTCACTGTATTTAC+AGG | - | contig366end:25365-25384 | MsG0080048598.01.T01:intron | 35.0% | |
| TAAGCGGAGATATACCATTT+AGG | - | contig366end:25432-25451 | MsG0080048598.01.T01:intron | 35.0% | |
| TACAGGTGAAATGACAATAG+AGG | - | contig366end:25382-25401 | MsG0080048598.01.T01:intron | 35.0% | |
| TATCTTATTCACCCTCTTTG+AGG | - | contig366end:23972-23991 | MsG0080048598.01.T01:CDS | 35.0% | |
| TCAAATAAGTCAGTCCAAAC+AGG | - | contig366end:23467-23486 | MsG0080048598.01.T01:CDS | 35.0% | |
| TCAAGAAAACCAAATGGAAG+CGG | - | contig366end:25215-25234 | MsG0080048598.01.T01:CDS | 35.0% | |
| TCCTTGTCAAGAAAACCAAA+TGG | - | contig366end:25209-25228 | MsG0080048598.01.T01:CDS | 35.0% | |
| TGAAGAATCTAACAGACCAT+AGG | + | contig366end:25261-25280 | None:intergenic | 35.0% | |
| TTCTGTGAGACCTGAAATAA+CGG | + | contig366end:25188-25207 | None:intergenic | 35.0% | |
| ! | AACACATTCAGTTGCTTTCT+CGG | - | contig366end:24982-25001 | MsG0080048598.01.T01:CDS | 35.0% |
| ! | AAGTCATTCTCCTTTTCCTT+TGG | - | contig366end:23752-23771 | MsG0080048598.01.T01:intron | 35.0% |
| ! | AGCCTAGTTCTTTGTGTAAA+AGG | - | contig366end:24535-24554 | MsG0080048598.01.T01:CDS | 35.0% |
| ! | TATTGATTGCCTACAAACCT+CGG | - | contig366end:25339-25358 | MsG0080048598.01.T01:CDS | 35.0% |
| !! | CTATAATGGACTCAAAGTGT+TGG | + | contig366end:24003-24022 | None:intergenic | 35.0% |
| !! | GCATTGGTACGTCAAAATTT+TGG | - | contig366end:25649-25668 | MsG0080048598.01.T01:intron | 35.0% |
| !! | GTGATTTTGGCAGTTCATTT+AGG | - | contig366end:23840-23859 | MsG0080048598.01.T01:intron | 35.0% |
| !! | TAGTTGATGAAGGAATGACT+TGG | - | contig366end:23942-23961 | MsG0080048598.01.T01:CDS | 35.0% |
| !! | TATGGCCTTAAAACTTTTGG+GGG | + | contig366end:23897-23916 | None:intergenic | 35.0% |
| !! | TCGTTAAAGCGTTAAGTTGA+TGG | + | contig366end:25123-25142 | None:intergenic | 35.0% |
| !! | TGGAAGCATTAACTGTGAAA+AGG | - | contig366end:24147-24166 | MsG0080048598.01.T01:CDS | 35.0% |
| !! | TTTGGTTTGGATGATCTTCT+TGG | - | contig366end:23806-23825 | MsG0080048598.01.T01:intron | 35.0% |
| !!! | AGATTGTTTTTTGGTGGAAG+TGG | - | contig366end:24668-24687 | MsG0080048598.01.T01:CDS | 35.0% |
| !!! | TCAGTCCGTTTTGAAAACAT+TGG | + | contig366end:24325-24344 | None:intergenic | 35.0% |
| !!! | TCCATTTGGTTTTCTTGACA+AGG | + | contig366end:25213-25232 | None:intergenic | 35.0% |
| AGAACTCCAGTATGCGTAAT+TGG | - | contig366end:25032-25051 | MsG0080048598.01.T01:CDS | 40.0% | |
| AGGTCTCAATCATCTCAATC+TGG | - | contig366end:23860-23879 | MsG0080048598.01.T01:CDS | 40.0% | |
| ATATCACCCTGACAAGAACA+AGG | - | contig366end:23181-23200 | MsG0080048598.01.T01:intron | 40.0% | |
| ATCTCGTACGCTGTTAAAAG+AGG | + | contig366end:23578-23597 | None:intergenic | 40.0% | |
| ATGTACAGGTATGCAAGTGA+TGG | - | contig366end:24476-24495 | MsG0080048598.01.T01:CDS | 40.0% | |
| CACTGCTGAAAAGTTACCTA+GGG | - | contig366end:24369-24388 | MsG0080048598.01.T01:intron | 40.0% | |
| CCTTTAGATCTTCCAAAGCA+AGG | - | contig366end:25057-25076 | MsG0080048598.01.T01:CDS | 40.0% | |
| CTAAGAACACGCCAAATTAC+AGG | + | contig366end:24424-24443 | None:intergenic | 40.0% | |
| GACAAGTTATCAGAGATAGC+TGG | + | contig366end:23123-23142 | None:intergenic | 40.0% | |
| GCTAGAATCACTTCTCACTT+TGG | - | contig366end:25085-25104 | MsG0080048598.01.T01:CDS | 40.0% | |
| GGAAAATGAAAAGGGTTCTC+TGG | - | contig366end:24240-24259 | MsG0080048598.01.T01:intron | 40.0% | |
| GGTCTCAATCATCTCAATCT+GGG | - | contig366end:23861-23880 | MsG0080048598.01.T01:CDS | 40.0% | |
| GTAATTTGGCGTGTTCTTAG+TGG | - | contig366end:24424-24443 | MsG0080048598.01.T01:intron | 40.0% | |
| TAAAAGACTAAGGCCCTGTT+TGG | - | contig366end:23279-23298 | MsG0080048598.01.T01:intron | 40.0% | |
| TATACTACTAAGGGCCTGTT+TGG | + | contig366end:23484-23503 | None:intergenic | 40.0% | |
| TCTTATTCACCCTCTTTGAG+GGG | - | contig366end:23974-23993 | MsG0080048598.01.T01:CDS | 40.0% | |
| TGCAAAACACCAAGGTTTGT+AGG | + | contig366end:25510-25529 | None:intergenic | 40.0% | |
| TGCCACTGGATAAAAGACTA+AGG | - | contig366end:23269-23288 | MsG0080048598.01.T01:intron | 40.0% | |
| TGGTATATCTCCGCTTAGAA+CGG | + | contig366end:25429-25448 | None:intergenic | 40.0% | |
| ! | ATTGTAGGTTGGCTACCTAA+TGG | - | contig366end:24810-24829 | MsG0080048598.01.T01:intron | 40.0% |
| ! | CAGCTTGTTCTTTCTTAGAC+TGG | + | contig366end:24950-24969 | None:intergenic | 40.0% |
| ! | GAGTTCCCCCAAAAGTTTTA+AGG | - | contig366end:23889-23908 | MsG0080048598.01.T01:CDS | 40.0% |
| ! | GTGGATTTAACTTCAGACCA+GGG | - | contig366end:23699-23718 | MsG0080048598.01.T01:CDS | 40.0% |
| ! | TCATTCTCCTTTTCCTTTGG+CGG | - | contig366end:23755-23774 | MsG0080048598.01.T01:intron | 40.0% |
| ! | TGGATTTAACTTCAGACCAG+GGG | - | contig366end:23700-23719 | MsG0080048598.01.T01:CDS | 40.0% |
| ! | TTTATCAGCTCCGTTCTAAG+CGG | - | contig366end:25416-25435 | MsG0080048598.01.T01:intron | 40.0% |
| !! | AAAACTTTTGGGGGAACTCT+TGG | + | contig366end:23888-23907 | None:intergenic | 40.0% |
| !! | AAACTTTGAGGCTCTTTGTG+GGG | - | contig366end:25007-25026 | MsG0080048598.01.T01:CDS | 40.0% |
| !! | CAAACTTTGAGGCTCTTTGT+GGG | - | contig366end:25006-25025 | MsG0080048598.01.T01:CDS | 40.0% |
| !! | CCTTGCTTTGGAAGATCTAA+AGG | + | contig366end:25060-25079 | None:intergenic | 40.0% |
| !! | TCAAACTTTGAGGCTCTTTG+TGG | - | contig366end:25005-25024 | MsG0080048598.01.T01:CDS | 40.0% |
| !!! | TTCTAGCTTTTCCCTTGCTT+TGG | + | contig366end:25072-25091 | None:intergenic | 40.0% |
| ACAGTGAATTTCCCTTTCCG+AGG | + | contig366end:25359-25378 | None:intergenic | 45.0% | |
| ATTGCCTACAAACCTCGGAA+AGG | - | contig366end:25344-25363 | MsG0080048598.01.T01:CDS | 45.0% | |
| CACTTCCAGCTATTGTAGGT+TGG | - | contig366end:24799-24818 | MsG0080048598.01.T01:intron | 45.0% | |
| CATTGCCTTCAGTGATGTAC+AGG | - | contig366end:24462-24481 | MsG0080048598.01.T01:intron | 45.0% | |
| CCTGACAAGAACAAGGCTAA+GGG | - | contig366end:23188-23207 | MsG0080048598.01.T01:intron | 45.0% | |
| CTTTGAGTCCATTATAGGGG+AGG | - | contig366end:24006-24025 | MsG0080048598.01.T01:CDS | 45.0% | |
| GAACAACAATGGGGTAACCA+GGG | - | contig366end:23722-23741 | MsG0080048598.01.T01:CDS | 45.0% | |
| GATGACCAGCTTCAAATCCA+GGG | + | contig366end:23658-23677 | None:intergenic | 45.0% | |
| GATGCACTTCCAGCTATTGT+AGG | - | contig366end:24795-24814 | MsG0080048598.01.T01:intron | 45.0% | |
| GATTCGAGAGTGAGAAAGCT+AGG | - | contig366end:24768-24787 | MsG0080048598.01.T01:CDS | 45.0% | |
| GCACTGCTGAAAAGTTACCT+AGG | - | contig366end:24368-24387 | MsG0080048598.01.T01:intron | 45.0% | |
| GCATACCTGTACATCACTGA+AGG | + | contig366end:24470-24489 | None:intergenic | 45.0% | |
| GCTTCCAACCTGTCAAAAGA+GGG | + | contig366end:24134-24153 | None:intergenic | 45.0% | |
| GCTTTCTCGGTCAAACTTTG+AGG | - | contig366end:24995-25014 | MsG0080048598.01.T01:CDS | 45.0% | |
| GCTTTCTCTCTATATGCCAC+TGG | - | contig366end:23255-23274 | MsG0080048598.01.T01:intron | 45.0% | |
| GTCTCATTCTGTAAGGAGCT+CGG | - | contig366end:24172-24191 | MsG0080048598.01.T01:CDS | 45.0% | |
| TCTAGGGACTCCATTTCCTA+TGG | - | contig366end:25242-25261 | MsG0080048598.01.T01:CDS | 45.0% | |
| TGCTTCCAACCTGTCAAAAG+AGG | + | contig366end:24135-24154 | None:intergenic | 45.0% | |
| TTGCCTACAAACCTCGGAAA+GGG | - | contig366end:25345-25364 | MsG0080048598.01.T01:intron | 45.0% | |
| TTTCCCTTTCCGAGGTTTGT+AGG | + | contig366end:25351-25370 | None:intergenic | 45.0% | |
| ! | AAGGCACCAATTACGCATAC+TGG | + | contig366end:25041-25060 | None:intergenic | 45.0% |
| ! | GGTCTGAAGTTAAATCCACC+AGG | + | contig366end:23698-23717 | None:intergenic | 45.0% |
| ! | GGTGGATTTAACTTCAGACC+AGG | - | contig366end:23698-23717 | MsG0080048598.01.T01:CDS | 45.0% |
| ! | TACACTGCAAGGAGCTTTGA+AGG | - | contig366end:24036-24055 | MsG0080048598.01.T01:CDS | 45.0% |
| ! | TGGATTTGAAGCTGGTCATC+CGG | - | contig366end:23658-23677 | MsG0080048598.01.T01:CDS | 45.0% |
| !! | AAAGGGAGCACCGTTATTTC+AGG | - | contig366end:25175-25194 | MsG0080048598.01.T01:CDS | 45.0% |
| !! | CCTTAGCCTTGTTCTTGTCA+GGG | + | contig366end:23190-23209 | None:intergenic | 45.0% |
| !! | GGCCTTAGTCTTTTATCCAG+TGG | + | contig366end:23274-23293 | None:intergenic | 45.0% |
| !! | TTTTTGGTGGAAGTGGCTCT+TGG | - | contig366end:24675-24694 | MsG0080048598.01.T01:CDS | 45.0% |
| AAAAGCCTTGGAGCTTTGCG+CGG | + | contig366end:24205-24224 | None:intergenic | 50.0% | |
| AAATGGAAGCGGCAGCTCTA+GGG | - | contig366end:25226-25245 | MsG0080048598.01.T01:CDS | 50.0% | |
| AAGGGTTCTCTGGTCGAGTA+CGG | - | contig366end:24250-24269 | MsG0080048598.01.T01:intron | 50.0% | |
| ACCAGCAACCTCCCCTATAA+TGG | + | contig366end:24017-24036 | None:intergenic | 50.0% | |
| AGAATGACTTAGAGCCTCCC+TGG | + | contig366end:23742-23761 | None:intergenic | 50.0% | |
| AGACCAGGGGAACAACAATG+GGG | - | contig366end:23713-23732 | MsG0080048598.01.T01:CDS | 50.0% | |
| CAGACCAGGGGAACAACAAT+GGG | - | contig366end:23712-23731 | MsG0080048598.01.T01:CDS | 50.0% | |
| CCCTGACAAGAACAAGGCTA+AGG | - | contig366end:23187-23206 | MsG0080048598.01.T01:intron | 50.0% | |
| GGAACAACAATGGGGTAACC+AGG | - | contig366end:23721-23740 | MsG0080048598.01.T01:CDS | 50.0% | |
| GGAGATGAGAAAGGAAACCC+TGG | - | contig366end:23638-23657 | MsG0080048598.01.T01:CDS | 50.0% | |
| GGATGACCAGCTTCAAATCC+AGG | + | contig366end:23659-23678 | None:intergenic | 50.0% | |
| GGTAGCCAACCTACAATAGC+TGG | + | contig366end:24807-24826 | None:intergenic | 50.0% | |
| TATATCCGCGCAAAGCTCCA+AGG | - | contig366end:24197-24216 | MsG0080048598.01.T01:intron | 50.0% | |
| TCAGACCAGGGGAACAACAA+TGG | - | contig366end:23711-23730 | MsG0080048598.01.T01:CDS | 50.0% | |
| TCCATTATAGGGGAGGTTGC+TGG | - | contig366end:24013-24032 | MsG0080048598.01.T01:CDS | 50.0% | |
| TGTTGGATGCCCCTCAAAGA+GGG | + | contig366end:23986-24005 | None:intergenic | 50.0% | |
| ! | CTCTCCCTCTTTTGACAGGT+TGG | - | contig366end:24127-24146 | MsG0080048598.01.T01:CDS | 50.0% |
| ! | GGAAACCCTGGATTTGAAGC+TGG | - | contig366end:23650-23669 | MsG0080048598.01.T01:CDS | 50.0% |
| ! | GGATTTGAAGCTGGTCATCC+GGG | - | contig366end:23659-23678 | MsG0080048598.01.T01:CDS | 50.0% |
| ! | GTCTCTCTCCCTCTTTTGAC+AGG | - | contig366end:24123-24142 | MsG0080048598.01.T01:CDS | 50.0% |
| ! | TTACCCCATTGTTGTTCCCC+TGG | + | contig366end:23719-23738 | None:intergenic | 50.0% |
| ! | TTCTCCTTTTCCTTTGGCGG+CGG | - | contig366end:23758-23777 | MsG0080048598.01.T01:intron | 50.0% |
| !! | CCCTTAGCCTTGTTCTTGTC+AGG | + | contig366end:23191-23210 | None:intergenic | 50.0% |
| CAAATGGAAGCGGCAGCTCT+AGG | - | contig366end:25225-25244 | MsG0080048598.01.T01:CDS | 55.0% | |
| CAACAATGGGGTAACCAGGG+AGG | - | contig366end:23725-23744 | MsG0080048598.01.T01:CDS | 55.0% | |
| GAGGTTGCTGGTACACTGCA+AGG | - | contig366end:24025-24044 | MsG0080048598.01.T01:CDS | 55.0% | |
| GCTGGGTTTAACATGCGACG+AGG | + | contig366end:23105-23124 | None:intergenic | 55.0% | |
| GTGTTGGATGCCCCTCAAAG+AGG | + | contig366end:23987-24006 | None:intergenic | 55.0% | |
| GTTGAGAGAAGCAGCACCCT+AGG | + | contig366end:24388-24407 | None:intergenic | 55.0% | |
| ! | CTAGAGCTGCCGCTTCCATT+TGG | + | contig366end:25227-25246 | None:intergenic | 55.0% |
| ! | TTTGAAGCTGGTCATCCGGG+AGG | - | contig366end:23662-23681 | MsG0080048598.01.T01:CDS | 55.0% |
| AGAGCCGCCGCCAAAGGAAA+AGG | + | contig366end:23765-23784 | None:intergenic | 60.0% | |
| CCAGGACCACCATAACCTCC+CGG | + | contig366end:23680-23699 | None:intergenic | 60.0% | |
| GCTGGTCATCCGGGAGGTTA+TGG | - | contig366end:23668-23687 | MsG0080048598.01.T01:CDS | 60.0% | |
| GGAGGTTATGGTGGTCCTGG+TGG | - | contig366end:23680-23699 | MsG0080048598.01.T01:CDS | 60.0% | |
| GGTCATCCGGGAGGTTATGG+TGG | - | contig366end:23671-23690 | MsG0080048598.01.T01:CDS | 60.0% | |
| GGTTCTCTGGTCGAGTACGG+CGG | - | contig366end:24253-24272 | MsG0080048598.01.T01:intron | 60.0% | |
| ! | TTTTCCTTTGGCGGCGGCTC+TGG | - | contig366end:23764-23783 | MsG0080048598.01.T01:intron | 60.0% |
| ATCACCAGAGCCGCCGCCAA+AGG | + | contig366end:23771-23790 | None:intergenic | 65.0% | |
| CCGGGAGGTTATGGTGGTCC+TGG | - | contig366end:23677-23696 | MsG0080048598.01.T01:CDS | 65.0% | |
| GGTCGAGTACGGCGGTGACT+TGG | - | contig366end:24261-24280 | MsG0080048598.01.T01:intron | 65.0% | |
| ! | CGGCGGTGACTTGGCTGTCA+AGG | - | contig366end:24270-24289 | MsG0080048598.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig366end | gene | 22997 | 25954 | 22997 | ID=MsG0080048598.01;Name=MsG0080048598.01 |
| contig366end | mRNA | 22997 | 25954 | 22997 | ID=MsG0080048598.01.T01;Parent=MsG0080048598.01;Name=MsG0080048598.01.T01;_AED=0.26;_eAED=0.27;_QI=0|1|0.85|1|0.83|0.71|7|342|534 |
| contig366end | exon | 25875 | 25954 | 25875 | ID=MsG0080048598.01.T01:exon:26875;Parent=MsG0080048598.01.T01 |
| contig366end | exon | 25709 | 25782 | 25709 | ID=MsG0080048598.01.T01:exon:26876;Parent=MsG0080048598.01.T01 |
| contig366end | exon | 24894 | 25363 | 24894 | ID=MsG0080048598.01.T01:exon:26877;Parent=MsG0080048598.01.T01 |
| contig366end | exon | 24468 | 24806 | 24468 | ID=MsG0080048598.01.T01:exon:26878;Parent=MsG0080048598.01.T01 |
| contig366end | exon | 23845 | 24198 | 23845 | ID=MsG0080048598.01.T01:exon:26879;Parent=MsG0080048598.01.T01 |
| contig366end | exon | 23308 | 23754 | 23308 | ID=MsG0080048598.01.T01:exon:26880;Parent=MsG0080048598.01.T01 |
| contig366end | exon | 22997 | 23179 | 22997 | ID=MsG0080048598.01.T01:exon:26881;Parent=MsG0080048598.01.T01 |
| contig366end | CDS | 25875 | 25954 | 25875 | ID=MsG0080048598.01.T01:cds;Parent=MsG0080048598.01.T01 |
| contig366end | CDS | 25709 | 25782 | 25709 | ID=MsG0080048598.01.T01:cds;Parent=MsG0080048598.01.T01 |
| contig366end | CDS | 24894 | 25363 | 24894 | ID=MsG0080048598.01.T01:cds;Parent=MsG0080048598.01.T01 |
| contig366end | CDS | 24468 | 24806 | 24468 | ID=MsG0080048598.01.T01:cds;Parent=MsG0080048598.01.T01 |
| contig366end | CDS | 23845 | 24198 | 23845 | ID=MsG0080048598.01.T01:cds;Parent=MsG0080048598.01.T01 |
| contig366end | CDS | 23467 | 23754 | 23467 | ID=MsG0080048598.01.T01:cds;Parent=MsG0080048598.01.T01 |
| contig366end | three_prime_UTR | 23308 | 23466 | 23308 | ID=MsG0080048598.01.T01:three_prime_utr;Parent=MsG0080048598.01.T01 |
| contig366end | three_prime_UTR | 22997 | 23179 | 22997 | ID=MsG0080048598.01.T01:three_prime_utr;Parent=MsG0080048598.01.T01 |
| Gene Sequence |
| Protein sequence |
