AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026069.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026069.01.T01 MTR_5g038900 66.877 317 67 5 1 313 1 283 1.25e-136 391
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026069.01.T01 AT1G14360 59.177 316 91 5 1 312 1 282 5.19e-121 351
MsG0580026069.01.T01 AT2G02810 56.329 316 100 6 1 312 1 282 2.55e-112 329

Find 92 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGTTGGGCATGAATTTA+TGG 0.149384 5:+30140795 MsG0580026069.01.T01:CDS
GTGCTCCTTGGTGGTCTTAT+TGG 0.176225 5:+30137703 MsG0580026069.01.T01:CDS
CCAAATGCTCCTCTTGGATA+TGG 0.204631 5:+30139949 MsG0580026069.01.T01:CDS
ATTCCTATACTTTGAGTTAC+AGG 0.229340 5:+30139238 MsG0580026069.01.T01:CDS
GGTTCATCACCTCGCTTTAA+TGG 0.233444 5:+30136773 MsG0580026069.01.T01:exon
TACTTTGAGTTACAGGGATT+TGG 0.236462 5:+30139245 MsG0580026069.01.T01:CDS
AGGAAGGTACAAAGGTATTC+TGG 0.244279 5:-30139753 None:intergenic
CTTTGTACCTTCCTTGTTGC+TGG 0.252082 5:+30139762 MsG0580026069.01.T01:CDS
AGAACGTGGTTTGTTTAATT+TGG 0.267247 5:+30137053 MsG0580026069.01.T01:CDS
AAAATATCCCATGCTGCTTC+TGG 0.276882 5:-30140899 None:intergenic
ACTTTGAGTTACAGGGATTT+GGG 0.288567 5:+30139246 MsG0580026069.01.T01:CDS
CCTTCTGCGTCGCCGGAATC+TGG 0.296006 5:+30136835 MsG0580026069.01.T01:CDS
ATCTGGGGTGGTGGAAATAC+TGG 0.354736 5:+30137678 MsG0580026069.01.T01:CDS
CTTCAATGCAGTTATGTTGA+TGG 0.358209 5:+30139698 MsG0580026069.01.T01:CDS
AATATACGCCGACCAGATTC+CGG 0.360790 5:-30136847 None:intergenic
TTCTTGACTATAAGCCGGTT+TGG 0.375249 5:+30140962 MsG0580026069.01.T01:CDS
CATGTAAATCATATTGTATA+TGG 0.377775 5:-30140822 None:intergenic
TTCAGGTCAACGAAGCGATT+TGG 0.380895 5:+30136983 MsG0580026069.01.T01:intron
TATTTACCAAGGCATTCTTC+AGG 0.383876 5:+30136866 MsG0580026069.01.T01:CDS
GCTGGAATTACTAATACTAT+TGG 0.396641 5:+30137729 MsG0580026069.01.T01:CDS
TATGTTGGGCATGAATTTAT+GGG 0.405842 5:+30140796 MsG0580026069.01.T01:CDS
CTCCGATCTTCATACCGTTC+CGG 0.415606 5:+30136709 MsG0580026069.01.T01:five_prime_UTR
TTCATCATTTGCACTTCTAA+AGG 0.417139 5:+30139791 MsG0580026069.01.T01:CDS
AATTGTATAGTCGTAAACTA+TGG 0.420018 5:+30137819 MsG0580026069.01.T01:CDS
TGGTGGTCTTATTGGAGTGC+TGG 0.428422 5:+30137711 MsG0580026069.01.T01:CDS
GAAATACTGGTGGTGCTCCT+TGG 0.431303 5:+30137691 MsG0580026069.01.T01:CDS
TTGATGGGTTCACTCGTATA+CGG 0.431609 5:+30139714 MsG0580026069.01.T01:CDS
TAATACTATTGGTCCTGCTA+TGG 0.436414 5:+30137740 MsG0580026069.01.T01:CDS
AACAAGTGCTTGGGGTATGT+TGG 0.436769 5:+30140781 MsG0580026069.01.T01:CDS
CCATATCCAAGAGGAGCATT+TGG 0.439599 5:-30139949 None:intergenic
ACAAGTGCTTGGGGTATGTT+GGG 0.444245 5:+30140782 MsG0580026069.01.T01:CDS
GGAAGGTACAAAGGTATTCT+GGG 0.451346 5:-30139752 None:intergenic
AAATTCATCATCAGATTATG+TGG 0.452264 5:+30139645 MsG0580026069.01.T01:intron
TATGTGCAGTGATAAAGATC+TGG 0.457632 5:+30137661 MsG0580026069.01.T01:intron
GTTCTCGCCTTCTGCGTCGC+CGG 0.457661 5:+30136828 MsG0580026069.01.T01:CDS
GCACATCCAAATGCTCCTCT+TGG 0.463943 5:+30139943 MsG0580026069.01.T01:CDS
CAAATGCTCCTCTTGGATAT+GGG 0.465849 5:+30139950 MsG0580026069.01.T01:CDS
TTCAATGCAGTTATGTTGAT+GGG 0.470619 5:+30139699 MsG0580026069.01.T01:CDS
GCCAAGTGGTAGTGGATATG+AGG 0.489109 5:+30140853 MsG0580026069.01.T01:CDS
ATACTGGTGGTGCTCCTTGG+TGG 0.493880 5:+30137694 MsG0580026069.01.T01:CDS
GTATATTAGTTACCCTGCTC+AGG 0.494178 5:+30137779 MsG0580026069.01.T01:CDS
AAAGCTTCAATTCCCATAGC+AGG 0.502581 5:-30137753 None:intergenic
TGTTAGCTAAAGAGCCAAAC+CGG 0.504636 5:-30140976 None:intergenic
AGCGAGGTGATGAACCGGTT+CGG 0.506908 5:-30136766 None:intergenic
TTATATTCTTGACTATAAGC+CGG 0.511449 5:+30140957 MsG0580026069.01.T01:CDS
ATCCCTGTAACTCAAAGTAT+AGG 0.511781 5:-30139241 None:intergenic
TTTGAACTTGGCGCAGAACG+TGG 0.519954 5:+30137039 MsG0580026069.01.T01:CDS
CTTGCTGATAGTCTTTGAGC+TGG 0.522206 5:-30139917 None:intergenic
AATACTATTGGTCCTGCTAT+GGG 0.523343 5:+30137741 MsG0580026069.01.T01:CDS
ATATGATTTACATGTTTGCA+TGG 0.526096 5:+30140831 MsG0580026069.01.T01:CDS
GTGATAAAGATCTGGGGTGG+TGG 0.529688 5:+30137669 MsG0580026069.01.T01:intron
ATTAAAGCGAGGTGATGAAC+CGG 0.530102 5:-30136771 None:intergenic
ACGAAGCGATTTGGTAAAGA+TGG 0.532019 5:+30136992 MsG0580026069.01.T01:CDS
GTATTGCTGCTGTGGTGCTG+TGG 0.533005 5:+30140925 MsG0580026069.01.T01:CDS
TTTGCATGGCCAAGTGGTAG+TGG 0.534136 5:+30140845 MsG0580026069.01.T01:CDS
CGACGCAGAAGGCGAGAACA+AGG 0.544545 5:-30136824 None:intergenic
CCAGATTCCGGCGACGCAGA+AGG 0.547977 5:-30136835 None:intergenic
CTCAAAGACTATCAGCAAGC+TGG 0.553037 5:+30139921 MsG0580026069.01.T01:CDS
TATTGCTGCTGTGGTGCTGT+GGG 0.554263 5:+30140926 MsG0580026069.01.T01:CDS
TTAATGGAAGCTCACGGCGG+AGG 0.556627 5:+30136789 MsG0580026069.01.T01:exon
AACCGGAACGGTATGAAGAT+CGG 0.557876 5:-30136711 None:intergenic
ATGTGCAGTGATAAAGATCT+GGG 0.558786 5:+30137662 MsG0580026069.01.T01:intron
TCAACATAACTGCATTGAAG+TGG 0.559252 5:-30139695 None:intergenic
ACAACATCCAGAAGCAGCAT+GGG 0.564204 5:+30140892 MsG0580026069.01.T01:CDS
TATGAAGATCGGAGAGGTGA+AGG 0.564242 5:-30136700 None:intergenic
TGTACCTTCCTTGTTGCTGG+AGG 0.565023 5:+30139765 MsG0580026069.01.T01:CDS
AACAACATCCAGAAGCAGCA+TGG 0.568553 5:+30140891 MsG0580026069.01.T01:CDS
TTCCTATACTTTGAGTTACA+GGG 0.571720 5:+30139239 MsG0580026069.01.T01:CDS
GTGTTTCCTGAAGAATGCCT+TGG 0.578829 5:-30136872 None:intergenic
CTTTGAGTTACAGGGATTTG+GGG 0.583060 5:+30139247 MsG0580026069.01.T01:CDS
AGAAGGCGAGAACAAGGATG+CGG 0.591493 5:-30136818 None:intergenic
TGGGGTGGTGGAAATACTGG+TGG 0.597101 5:+30137681 MsG0580026069.01.T01:CDS
GCCTCATATCCACTACCACT+TGG 0.602799 5:-30140854 None:intergenic
AAATTTGCGAGTGGTAGTGA+TGG 0.603630 5:-30141002 None:intergenic
AGGCGAGAACAAGGATGCGG+CGG 0.605230 5:-30136815 None:intergenic
CTGCGTCGCCGGAATCTGGT+CGG 0.615572 5:+30136839 MsG0580026069.01.T01:CDS
GGTACAAAGGTATTCTGGGA+TGG 0.626831 5:-30139748 None:intergenic
CAGCAACAAGGAAGGTACAA+AGG 0.630883 5:-30139761 None:intergenic
ATGAAACACCTCCAGCAACA+AGG 0.652025 5:-30139773 None:intergenic
AACACCTCCAGCAACAAGGA+AGG 0.653676 5:-30139769 None:intergenic
TACATGTTTGCATGGCCAAG+TGG 0.656810 5:+30140839 MsG0580026069.01.T01:CDS
ATGTTGGGCATGAATTTATG+GGG 0.666109 5:+30140797 MsG0580026069.01.T01:CDS
GATGCTTACAAATTTGCGAG+TGG 0.674536 5:-30141011 None:intergenic
TGGTCGGCGTATATTTACCA+AGG 0.679374 5:+30136855 MsG0580026069.01.T01:CDS
AAACATAGCCCATATCCAAG+AGG 0.688551 5:-30139958 None:intergenic
CGTGAGCTTCCATTAAAGCG+AGG 0.699746 5:-30136782 None:intergenic
CTCGCTTTAATGGAAGCTCA+CGG 0.709865 5:+30136783 MsG0580026069.01.T01:exon
GAACGGTATGAAGATCGGAG+AGG 0.738885 5:-30136706 None:intergenic
GCTTTAATGGAAGCTCACGG+CGG 0.743316 5:+30136786 MsG0580026069.01.T01:exon
GCACTCCAATAAGACCACCA+AGG 0.754915 5:-30137708 None:intergenic
GCAGTGATAAAGATCTGGGG+TGG 0.768977 5:+30137666 MsG0580026069.01.T01:intron
TGTGCAGTGATAAAGATCTG+GGG 0.795047 5:+30137663 MsG0580026069.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTAATTTTTATTTTATTT+TGG + Chr5:30137626-30137645 MsG0580026069.01.T01:intron 10.0%
!! AATATAAGTATTAAGATTTG+AGG + Chr5:30138727-30138746 MsG0580026069.01.T01:intron 15.0%
!! GTATAATAATTTGATACAAT+TGG + Chr5:30139121-30139140 MsG0580026069.01.T01:intron 15.0%
!! AAAAGCAATTAGTAAAAAGA+GGG - Chr5:30142217-30142236 None:intergenic 20.0%
!! AACAATTAATCATGATTAGT+GGG + Chr5:30138385-30138404 MsG0580026069.01.T01:intron 20.0%
!! AGGAATATTAGTAATTGTAA+TGG + Chr5:30141295-30141314 MsG0580026069.01.T01:intron 20.0%
!! AGTTAATTAATGTGTAAAGT+TGG + Chr5:30137604-30137623 MsG0580026069.01.T01:intron 20.0%
!! ATGAACAAACTAACTTTATA+GGG + Chr5:30141890-30141909 MsG0580026069.01.T01:intron 20.0%
!! ATTAACTAATAATAACAGCA+TGG - Chr5:30140323-30140342 None:intergenic 20.0%
!! CAATTTGAACAACTTATTTA+CGG + Chr5:30141770-30141789 MsG0580026069.01.T01:intron 20.0%
!! CATAACTTAACATGAAATTA+TGG - Chr5:30140193-30140212 None:intergenic 20.0%
!! CATGTAAATCATATTGTATA+TGG - Chr5:30140825-30140844 None:intergenic 20.0%
!! CTTTAGCATTTAAACAAAAT+TGG + Chr5:30139325-30139344 MsG0580026069.01.T01:intron 20.0%
!! CTTTGTATATAACCTAAATT+TGG - Chr5:30141277-30141296 None:intergenic 20.0%
!! TAAGACACATAAAAATGATA+TGG - Chr5:30138967-30138986 None:intergenic 20.0%
!! TAAGATAGAGAAAACATAAA+AGG - Chr5:30137473-30137492 None:intergenic 20.0%
!! TAGATAGTTAATTCAATTCA+CGG + Chr5:30137261-30137280 MsG0580026069.01.T01:intron 20.0%
!! TGATATATTACATAGAATCA+AGG + Chr5:30138010-30138029 MsG0580026069.01.T01:intron 20.0%
!! TGATTCTATGTAATATATCA+AGG - Chr5:30138010-30138029 None:intergenic 20.0%
!! TTATTTATGTATCTTTCTCT+TGG - Chr5:30142001-30142020 None:intergenic 20.0%
!!! AAAGGCAAATAAAGATTTTA+TGG + Chr5:30141838-30141857 MsG0580026069.01.T01:intron 20.0%
!!! AAATATTTTATGAGTTCCAA+AGG + Chr5:30141516-30141535 MsG0580026069.01.T01:intron 20.0%
!!! CAAATTTAGGTTATATACAA+AGG + Chr5:30141275-30141294 MsG0580026069.01.T01:intron 20.0%
!!! GCATTAGTTATTTAGTTTTT+GGG + Chr5:30139518-30139537 MsG0580026069.01.T01:intron 20.0%
!!! GTTTAAAAATTTTAGGGTTT+TGG - Chr5:30138521-30138540 None:intergenic 20.0%
!!! GTTTAACTTAAGCATTTATA+AGG - Chr5:30138696-30138715 None:intergenic 20.0%
!!! TATAAACCATAGTTTTTGTT+TGG + Chr5:30141742-30141761 MsG0580026069.01.T01:intron 20.0%
!!! TATTGAATTCTTTTGTGATT+TGG + Chr5:30136958-30136977 MsG0580026069.01.T01:intron 20.0%
!!! TCTCAATTTTAATAATCCAA+CGG + Chr5:30139294-30139313 MsG0580026069.01.T01:intron 20.0%
!!! TGCATTAGTTATTTAGTTTT+TGG + Chr5:30139517-30139536 MsG0580026069.01.T01:intron 20.0%
!!! TGTAAGATTTTCATTTCTTT+CGG + Chr5:30136895-30136914 MsG0580026069.01.T01:intron 20.0%
! AAAATGTTGAGATTTGAGAA+AGG - Chr5:30140654-30140673 None:intergenic 25.0%
! AAATTCATCATCAGATTATG+TGG + Chr5:30139645-30139664 MsG0580026069.01.T01:intron 25.0%
! AACTTAAGCATTTATAAGGA+AGG - Chr5:30138692-30138711 None:intergenic 25.0%
! AATTGTATAGTCGTAAACTA+TGG + Chr5:30137819-30137838 MsG0580026069.01.T01:CDS 25.0%
! ACATTCAAACACAAATGAAA+CGG - Chr5:30140629-30140648 None:intergenic 25.0%
! AGAAAATGAAATTCATCTAC+AGG - Chr5:30139277-30139296 None:intergenic 25.0%
! AGCACAATGAATAAGATATT+GGG - Chr5:30141361-30141380 None:intergenic 25.0%
! AGTCATTAGAGCTAAAAAAT+TGG + Chr5:30137908-30137927 MsG0580026069.01.T01:intron 25.0%
! ATATGATTTACATGTTTGCA+TGG + Chr5:30140831-30140850 MsG0580026069.01.T01:CDS 25.0%
! CAAAAGCAATTAGTAAAAAG+AGG - Chr5:30142218-30142237 None:intergenic 25.0%
! CAACAATTAATCATGATTAG+TGG + Chr5:30138384-30138403 MsG0580026069.01.T01:intron 25.0%
! CATCCTAAATAAAGATTCAT+TGG + Chr5:30140705-30140724 MsG0580026069.01.T01:intron 25.0%
! CATGAACAAACTAACTTTAT+AGG + Chr5:30141889-30141908 MsG0580026069.01.T01:intron 25.0%
! GAAAACATAAAAGGAACAAT+TGG - Chr5:30137464-30137483 None:intergenic 25.0%
! GATCAGAAATTATTCAGATT+AGG - Chr5:30140236-30140255 None:intergenic 25.0%
! GTATGGGATTATAATAAAAG+TGG + Chr5:30137841-30137860 MsG0580026069.01.T01:intron 25.0%
! TACTTGATAGATGAATTGAA+AGG - Chr5:30140298-30140317 None:intergenic 25.0%
! TAGCACAATGAATAAGATAT+TGG - Chr5:30141362-30141381 None:intergenic 25.0%
! TAGTCGTTAAATGTCTTTAT+TGG + Chr5:30140347-30140366 MsG0580026069.01.T01:intron 25.0%
! TATATATGTAATCCCAAGTT+TGG - Chr5:30138245-30138264 None:intergenic 25.0%
! TCTTTAAATGGTTTCACTAT+TGG + Chr5:30138771-30138790 MsG0580026069.01.T01:intron 25.0%
! TGAACAAACTAACTTTATAG+GGG + Chr5:30141891-30141910 MsG0580026069.01.T01:intron 25.0%
! TTACCTGTTAACTTTCTTAA+TGG - Chr5:30142163-30142182 None:intergenic 25.0%
! TTATATTCTTGACTATAAGC+CGG + Chr5:30140957-30140976 MsG0580026069.01.T01:CDS 25.0%
! TTCAAATTGATACTTTGTTC+TGG + Chr5:30141621-30141640 MsG0580026069.01.T01:intron 25.0%
! TTGAACTTCAAATTGATACA+GGG - Chr5:30141184-30141203 None:intergenic 25.0%
! TTTGACCAGCTTATTTATTT+AGG + Chr5:30142082-30142101 MsG0580026069.01.T01:intron 25.0%
!! AGACCAATGAATCTTTATTT+AGG - Chr5:30140711-30140730 None:intergenic 25.0%
!! ATTTTTAAACCGGATTAACT+AGG + Chr5:30137288-30137307 MsG0580026069.01.T01:intron 25.0%
!! GAACAAAGTATCAATTTGAA+TGG - Chr5:30141621-30141640 None:intergenic 25.0%
!! GTATTAAGATTTGAGGTAAA+AGG + Chr5:30138734-30138753 MsG0580026069.01.T01:intron 25.0%
!! TCATTTTCTCTGATTGTTAT+TGG + Chr5:30137548-30137567 MsG0580026069.01.T01:intron 25.0%
!! TCTCAAATCTCAACATTTTT+AGG + Chr5:30140655-30140674 MsG0580026069.01.T01:intron 25.0%
!! TTGTGAATTTGAAATGCAAA+TGG + Chr5:30136934-30136953 MsG0580026069.01.T01:intron 25.0%
!! TTTTATCACTTAAAGCTTGA+AGG + Chr5:30141242-30141261 MsG0580026069.01.T01:intron 25.0%
!!! AAGCTTTAAGTGATAAAACA+AGG - Chr5:30141240-30141259 None:intergenic 25.0%
!!! AGCTTTAAGTGATAAAACAA+GGG - Chr5:30141239-30141258 None:intergenic 25.0%
!!! ATATAGTTTTTTCAGTTACC+AGG + Chr5:30138475-30138494 MsG0580026069.01.T01:intron 25.0%
!!! ATGCTTTAGAGAATCTATAA+TGG - Chr5:30138890-30138909 None:intergenic 25.0%
!!! ATTGTATTACCTTGCTTTTA+AGG - Chr5:30140027-30140046 None:intergenic 25.0%
!!! CCACTGGTTTAAAAATTTTA+GGG - Chr5:30138527-30138546 None:intergenic 25.0%
!!! CTATAAAGTTAGTTTGTTCA+TGG - Chr5:30141891-30141910 None:intergenic 25.0%
!!! TCCACTGGTTTAAAAATTTT+AGG - Chr5:30138528-30138547 None:intergenic 25.0%
AAATGAAATTTGACACGTGT+CGG - Chr5:30137534-30137553 None:intergenic 30.0%
AAGACTTACTACTCAAATCA+TGG + Chr5:30142106-30142125 MsG0580026069.01.T01:intron 30.0%
ACAAGACCTATATAAAATCC+TGG - Chr5:30137981-30138000 None:intergenic 30.0%
AGCAAAAATCACAAATCACA+AGG - Chr5:30140551-30140570 None:intergenic 30.0%
AGGTTCAATGAACCAAATTT+AGG + Chr5:30141262-30141281 MsG0580026069.01.T01:intron 30.0%
ATAAAAATGATATGGCATGC+GGG - Chr5:30138959-30138978 None:intergenic 30.0%
ATAGAATCAAGGTCAAATGT+GGG + Chr5:30138021-30138040 MsG0580026069.01.T01:intron 30.0%
ATAGTCGTAAACTATGGTAT+GGG + Chr5:30137825-30137844 MsG0580026069.01.T01:intron 30.0%
ATGGTTAGATTAAATCTGTG+TGG + Chr5:30141857-30141876 MsG0580026069.01.T01:intron 30.0%
ATGTTGTAAGTCTGTAGATT+TGG - Chr5:30140413-30140432 None:intergenic 30.0%
CAATTAAATCGCAGAAAGTT+GGG + Chr5:30138437-30138456 MsG0580026069.01.T01:intron 30.0%
CATAAAAATGATATGGCATG+CGG - Chr5:30138960-30138979 None:intergenic 30.0%
CATACTTTAATCGTGATTAG+TGG + Chr5:30138293-30138312 MsG0580026069.01.T01:intron 30.0%
CATCCATTAAGAAAGTTAAC+AGG + Chr5:30142157-30142176 MsG0580026069.01.T01:intron 30.0%
CGTTAAATGTCTTTATTGGA+TGG + Chr5:30140351-30140370 MsG0580026069.01.T01:intron 30.0%
CTGTCAAACAAACTTTATGT+TGG - Chr5:30141797-30141816 None:intergenic 30.0%
GACACAGATAATAATGACTA+TGG - Chr5:30142241-30142260 None:intergenic 30.0%
GATGGAGATAAGTTCAATAT+TGG + Chr5:30140369-30140388 MsG0580026069.01.T01:intron 30.0%
GCAAAAATCACAAATCACAA+GGG - Chr5:30140550-30140569 None:intergenic 30.0%
GCAATTCCAAACAAAAACTA+TGG - Chr5:30141751-30141770 None:intergenic 30.0%
GCACAATGAATAAGATATTG+GGG - Chr5:30141360-30141379 None:intergenic 30.0%
GCATCATGAATCATTGTATT+GGG + Chr5:30138354-30138373 MsG0580026069.01.T01:intron 30.0%
GCTATATGCCAAAATCAAAA+GGG - Chr5:30140061-30140080 None:intergenic 30.0%
GCTGGAATTACTAATACTAT+TGG + Chr5:30137729-30137748 MsG0580026069.01.T01:CDS 30.0%
GTTGAACTTCAAATTGATAC+AGG - Chr5:30141185-30141204 None:intergenic 30.0%
TAAATTGTGAGATCGTAACA+TGG + Chr5:30138205-30138224 MsG0580026069.01.T01:intron 30.0%
TACTACTCAAATCATGGAAA+GGG + Chr5:30142112-30142131 MsG0580026069.01.T01:intron 30.0%
TACTCTTGTCTAAACTTACA+TGG + Chr5:30139852-30139871 MsG0580026069.01.T01:intron 30.0%
TAGTAAATCCATCAAAAGCA+AGG - Chr5:30139990-30140009 None:intergenic 30.0%
TATAGTCGTAAACTATGGTA+TGG + Chr5:30137824-30137843 MsG0580026069.01.T01:intron 30.0%
TATGTTGGGCATGAATTTAT+GGG + Chr5:30140796-30140815 MsG0580026069.01.T01:CDS 30.0%
TCAATAAGCTTACAAGTCAA+GGG + Chr5:30141655-30141674 MsG0580026069.01.T01:intron 30.0%
TCCAAATAAAAACCCTATTG+AGG + Chr5:30142059-30142078 MsG0580026069.01.T01:intron 30.0%
TCTTGCCTAAATAAATAAGC+TGG - Chr5:30142090-30142109 None:intergenic 30.0%
TGCATCATGAATCATTGTAT+TGG + Chr5:30138353-30138372 MsG0580026069.01.T01:intron 30.0%
TGCTATATGCCAAAATCAAA+AGG - Chr5:30140062-30140081 None:intergenic 30.0%
TGGTAGACAGTAATTATACA+TGG - Chr5:30137444-30137463 None:intergenic 30.0%
TGTTCAAATGTCTTTAGCAT+AGG + Chr5:30138988-30139007 MsG0580026069.01.T01:intron 30.0%
TGTTGTAAGTCTGTAGATTT+GGG - Chr5:30140412-30140431 None:intergenic 30.0%
TTACTACTCAAATCATGGAA+AGG + Chr5:30142111-30142130 MsG0580026069.01.T01:intron 30.0%
TTAGATTAAATCTGTGTGGT+TGG + Chr5:30141861-30141880 MsG0580026069.01.T01:intron 30.0%
TTCAATAAGCTTACAAGTCA+AGG + Chr5:30141654-30141673 MsG0580026069.01.T01:intron 30.0%
TTCAATGCAGTTATGTTGAT+GGG + Chr5:30139699-30139718 MsG0580026069.01.T01:CDS 30.0%
TTCATCATTTGCACTTCTAA+AGG + Chr5:30139791-30139810 MsG0580026069.01.T01:CDS 30.0%
TTCATTTCTTTCGGTTGAAT+TGG + Chr5:30136904-30136923 MsG0580026069.01.T01:intron 30.0%
TTGAGAAGTGAAAAGTGAAA+TGG + Chr5:30141329-30141348 MsG0580026069.01.T01:intron 30.0%
TTTATGACACTTCTAATCGA+AGG - Chr5:30137201-30137220 None:intergenic 30.0%
! ACCTCAATAGGGTTTTTATT+TGG - Chr5:30142063-30142082 None:intergenic 30.0%
! AGACTTGCTTAACTCATTAT+CGG - Chr5:30138855-30138874 None:intergenic 30.0%
! ATTCCTATACTTTGAGTTAC+AGG + Chr5:30139238-30139257 MsG0580026069.01.T01:CDS 30.0%
! CCCTAAAATTTTTAAACCAG+TGG + Chr5:30138524-30138543 MsG0580026069.01.T01:intron 30.0%
! TAAGGACCAGGATTTTATAT+AGG + Chr5:30137972-30137991 MsG0580026069.01.T01:intron 30.0%
! TAGGATGATTAGTTCATAGA+TGG - Chr5:30142285-30142304 None:intergenic 30.0%
! TATAACATTTTACCTGAGCA+GGG - Chr5:30137794-30137813 None:intergenic 30.0%
! TTAAGATTTGAGGTAAAAGG+TGG + Chr5:30138737-30138756 MsG0580026069.01.T01:intron 30.0%
! TTATAACATTTTACCTGAGC+AGG - Chr5:30137795-30137814 None:intergenic 30.0%
! TTCCTATACTTTGAGTTACA+GGG + Chr5:30139239-30139258 MsG0580026069.01.T01:CDS 30.0%
! TTTGTTTGACAGTAAGTTGA+GGG + Chr5:30141805-30141824 MsG0580026069.01.T01:intron 30.0%
! TTTTACTCCTTTCTTCTTTG+TGG + Chr5:30140151-30140170 MsG0580026069.01.T01:intron 30.0%
!! AGAACGTGGTTTGTTTAATT+TGG + Chr5:30137053-30137072 MsG0580026069.01.T01:CDS 30.0%
!! TATAGTGCTTAAAGTTGATG+TGG + Chr5:30138807-30138826 MsG0580026069.01.T01:intron 30.0%
!! TTAGCTCTAATGACTCAATA+AGG - Chr5:30137903-30137922 None:intergenic 30.0%
!!! AAATTTTAGGGTTTTGGTCT+CGG - Chr5:30138515-30138534 None:intergenic 30.0%
!!! AACAAAATTGGCTAGTTTTG+TGG + Chr5:30139337-30139356 MsG0580026069.01.T01:intron 30.0%
!!! GGGTTTTTTTTTATGTGAAC+CGG - Chr5:30136731-30136750 None:intergenic 30.0%
!!! TAGTTTTTGGGTGTCTTAAA+TGG + Chr5:30139530-30139549 MsG0580026069.01.T01:intron 30.0%
!!! TCTTTTGTGATTTGGTTTTC+AGG + Chr5:30136966-30136985 MsG0580026069.01.T01:intron 30.0%
!!! TTTTTTTATGTGAACCGGAA+CGG - Chr5:30136726-30136745 None:intergenic 30.0%
AAACTAACTTTATAGGGGTG+GGG + Chr5:30141896-30141915 MsG0580026069.01.T01:intron 35.0%
AAGGATCTGCATTGTTTAGT+AGG - Chr5:30142304-30142323 None:intergenic 35.0%
AAGTCCTCAAAAATGATTCC+AGG + Chr5:30139063-30139082 MsG0580026069.01.T01:CDS 35.0%
AATACTATTGGTCCTGCTAT+GGG + Chr5:30137741-30137760 MsG0580026069.01.T01:CDS 35.0%
AATGGTTTCACTATTGGAGT+AGG + Chr5:30138777-30138796 MsG0580026069.01.T01:intron 35.0%
ACAAACTAACTTTATAGGGG+TGG + Chr5:30141894-30141913 MsG0580026069.01.T01:intron 35.0%
ACCATTCCTTATACAGGAAT+AGG - Chr5:30138668-30138687 None:intergenic 35.0%
ACTATTGCTTTGTCTTTCTC+AGG + Chr5:30140750-30140769 MsG0580026069.01.T01:intron 35.0%
ACTTTAATCGTGATTAGTGG+AGG + Chr5:30138296-30138315 MsG0580026069.01.T01:intron 35.0%
AGCAATTAGTAAAAAGAGGG+AGG - Chr5:30142214-30142233 None:intergenic 35.0%
AGTTAATCGCGTGCAAAATA+TGG + Chr5:30137224-30137243 MsG0580026069.01.T01:intron 35.0%
ATATGCCAAAATCAAAAGGG+AGG - Chr5:30140058-30140077 None:intergenic 35.0%
ATCAATGTTGAAACCAAGCA+AGG - Chr5:30137935-30137954 None:intergenic 35.0%
ATCCATAATAGACAGTCCTA+AGG - Chr5:30140475-30140494 None:intergenic 35.0%
ATCCCTGTAACTCAAAGTAT+AGG - Chr5:30139244-30139263 None:intergenic 35.0%
ATCTACAGACTTACAACATC+AGG + Chr5:30140414-30140433 MsG0580026069.01.T01:intron 35.0%
ATGGATTTACTAATGCAACC+AGG + Chr5:30139998-30140017 MsG0580026069.01.T01:intron 35.0%
ATGTCTATTGTTGGGAAGAA+TGG + Chr5:30141922-30141941 MsG0580026069.01.T01:intron 35.0%
ATGTGCAGTGATAAAGATCT+GGG + Chr5:30137662-30137681 MsG0580026069.01.T01:intron 35.0%
ATGTTGGGCATGAATTTATG+GGG + Chr5:30140797-30140816 MsG0580026069.01.T01:CDS 35.0%
CAAACTAACTTTATAGGGGT+GGG + Chr5:30141895-30141914 MsG0580026069.01.T01:intron 35.0%
CAATAAGCTTACAAGTCAAG+GGG + Chr5:30141656-30141675 MsG0580026069.01.T01:intron 35.0%
CATAGAATCAAGGTCAAATG+TGG + Chr5:30138020-30138039 MsG0580026069.01.T01:intron 35.0%
CATGAATCATTGTATTGGGA+AGG + Chr5:30138358-30138377 MsG0580026069.01.T01:intron 35.0%
CATGATTAGTGGGAATAGAA+AGG + Chr5:30138395-30138414 MsG0580026069.01.T01:intron 35.0%
CTAAAAAATTGGTCCTTGCT+TGG + Chr5:30137919-30137938 MsG0580026069.01.T01:intron 35.0%
CTTCAATGCAGTTATGTTGA+TGG + Chr5:30139698-30139717 MsG0580026069.01.T01:CDS 35.0%
CTTTCCTTTCTCTCAACATT+CGG + Chr5:30139478-30139497 MsG0580026069.01.T01:intron 35.0%
GAAGAAAGGAGTAAAAAACG+AGG - Chr5:30140147-30140166 None:intergenic 35.0%
GAAGTCGTTGAGTCTTTAAA+TGG + Chr5:30138759-30138778 MsG0580026069.01.T01:intron 35.0%
GAATGTTGAGAGAAAGGAAA+GGG - Chr5:30139479-30139498 None:intergenic 35.0%
GCAAATTCATACAACAAGTC+AGG - Chr5:30138336-30138355 None:intergenic 35.0%
GCAATTAAATCGCAGAAAGT+TGG + Chr5:30138436-30138455 MsG0580026069.01.T01:intron 35.0%
GCAATTAGTAAAAAGAGGGA+GGG - Chr5:30142213-30142232 None:intergenic 35.0%
GTATGTTGGGCATGAATTTA+TGG + Chr5:30140795-30140814 MsG0580026069.01.T01:CDS 35.0%
GTGGAGCTATATTTAAACCT+CGG + Chr5:30138124-30138143 MsG0580026069.01.T01:intron 35.0%
GTTGAGGGAAAAAAAAGCAA+AGG + Chr5:30141820-30141839 MsG0580026069.01.T01:intron 35.0%
GTTTGTTTGACAGTAAGTTG+AGG + Chr5:30141804-30141823 MsG0580026069.01.T01:intron 35.0%
TAATACTATTGGTCCTGCTA+TGG + Chr5:30137740-30137759 MsG0580026069.01.T01:CDS 35.0%
TATGTGCAGTGATAAAGATC+TGG + Chr5:30137661-30137680 MsG0580026069.01.T01:intron 35.0%
TATTTAAACCTCGGTAAGCA+AGG + Chr5:30138133-30138152 MsG0580026069.01.T01:intron 35.0%
TCAACATAACTGCATTGAAG+TGG - Chr5:30139698-30139717 None:intergenic 35.0%
TCTCACAATTTACGATCTTG+TGG - Chr5:30138197-30138216 None:intergenic 35.0%
TGAGTTAAGCAAGTCTATCA+TGG + Chr5:30138859-30138878 MsG0580026069.01.T01:intron 35.0%
TTAAACCAGTGGAATCTATG+AGG + Chr5:30138535-30138554 MsG0580026069.01.T01:intron 35.0%
TTCTGTAGTTCTTGTCCTTT+GGG + Chr5:30139378-30139397 MsG0580026069.01.T01:intron 35.0%
TTCTGTCAGATCAGATTATG+AGG + Chr5:30142413-30142432 MsG0580026069.01.T01:intron 35.0%
TTGCTTAACTCATTATCGGT+GGG - Chr5:30138851-30138870 None:intergenic 35.0%
TTTCATGCCACAAAGAAGAA+AGG - Chr5:30140161-30140180 None:intergenic 35.0%
TTTCCTTTCTCTCAACATTC+GGG + Chr5:30139479-30139498 MsG0580026069.01.T01:intron 35.0%
! ACATAGAGTAAGCTTTGTCT+TGG - Chr5:30141444-30141463 None:intergenic 35.0%
! ACTTTGAGTTACAGGGATTT+GGG + Chr5:30139246-30139265 MsG0580026069.01.T01:CDS 35.0%
! ATTTTACTGTATTGCTGCTG+TGG + Chr5:30140917-30140936 MsG0580026069.01.T01:CDS 35.0%
! GATGATTAGTTCATAGATGG+TGG - Chr5:30142282-30142301 None:intergenic 35.0%
! GTGTTCTTTTTACTACATGC+AGG + Chr5:30139032-30139051 MsG0580026069.01.T01:intron 35.0%
! TACTTTGAGTTACAGGGATT+TGG + Chr5:30139245-30139264 MsG0580026069.01.T01:CDS 35.0%
! TATTTACCAAGGCATTCTTC+AGG + Chr5:30136866-30136885 MsG0580026069.01.T01:CDS 35.0%
! TCACGGTCACATTTTTAAAC+CGG + Chr5:30137278-30137297 MsG0580026069.01.T01:intron 35.0%
! TGTGTTACTATGGTATTCTC+TGG + Chr5:30141084-30141103 MsG0580026069.01.T01:intron 35.0%
!! ATACAATTGGCAATTTGCTG+AGG + Chr5:30139134-30139153 MsG0580026069.01.T01:intron 35.0%
!! GACTGTGAGGTTTTCTAAAA+GGG + Chr5:30139010-30139029 MsG0580026069.01.T01:intron 35.0%
!! TGTACCTGGAATCATTTTTG+AGG - Chr5:30139070-30139089 None:intergenic 35.0%
!! TTAAAGTTGATGTGGCTATG+TGG + Chr5:30138815-30138834 MsG0580026069.01.T01:intron 35.0%
!! TTCTTGAACCTTGCTTTTGA+TGG + Chr5:30139979-30139998 MsG0580026069.01.T01:intron 35.0%
!!! AATTTTAGGGTTTTGGTCTC+GGG - Chr5:30138514-30138533 None:intergenic 35.0%
!!! CATTTCCTCCCTTTTGATTT+TGG + Chr5:30140050-30140069 MsG0580026069.01.T01:intron 35.0%
!!! GTCAGCTTTTTTTTGCTTTC+TGG + Chr5:30142473-30142492 MsG0580026069.01.T01:intron 35.0%
!!! TTTTCATATTAGCACCGACA+CGG + Chr5:30137096-30137115 MsG0580026069.01.T01:intron 35.0%
!!! TTTTTGGGTGTCTTAAATGG+AGG + Chr5:30139533-30139552 MsG0580026069.01.T01:intron 35.0%
AAACATAGCCCATATCCAAG+AGG - Chr5:30139961-30139980 None:intergenic 40.0%
AAAGCTTCAATTCCCATAGC+AGG - Chr5:30137756-30137775 None:intergenic 40.0%
AACATCAGGCTTACTCAGTA+AGG + Chr5:30140428-30140447 MsG0580026069.01.T01:intron 40.0%
AACTAACTTTATAGGGGTGG+GGG + Chr5:30141897-30141916 MsG0580026069.01.T01:intron 40.0%
AAGCTGGTCAAACCTCAATA+GGG - Chr5:30142074-30142093 None:intergenic 40.0%
ACAATCCTCATAGATTCCAC+TGG - Chr5:30138543-30138562 None:intergenic 40.0%
ACCAGGATTCCTTAAAAGCA+AGG + Chr5:30140015-30140034 MsG0580026069.01.T01:intron 40.0%
AGTGCAACACCTAGTTAATC+CGG - Chr5:30137300-30137319 None:intergenic 40.0%
ATCACAAATCACAAGGGAGA+CGG - Chr5:30140544-30140563 None:intergenic 40.0%
ATCCCCTTTCAACAAAGCAA+TGG + Chr5:30141058-30141077 MsG0580026069.01.T01:intron 40.0%
ATTAAAGCGAGGTGATGAAC+CGG - Chr5:30136774-30136793 None:intergenic 40.0%
CAAATGCTCCTCTTGGATAT+GGG + Chr5:30139950-30139969 MsG0580026069.01.T01:CDS 40.0%
CAAGATAACATTCACCCCAA+AGG - Chr5:30139396-30139415 None:intergenic 40.0%
CGAATGTTGAGAGAAAGGAA+AGG - Chr5:30139480-30139499 None:intergenic 40.0%
CTAAAGGTCAGGAAATTCTC+AGG + Chr5:30139807-30139826 MsG0580026069.01.T01:intron 40.0%
CTGCAGAAGAACAATTGTGA+AGG - Chr5:30142323-30142342 None:intergenic 40.0%
CTTGCTTAACTCATTATCGG+TGG - Chr5:30138852-30138871 None:intergenic 40.0%
GAAGGAACCATTCCTTATAC+AGG - Chr5:30138674-30138693 None:intergenic 40.0%
GATGCTTACAAATTTGCGAG+TGG - Chr5:30141014-30141033 None:intergenic 40.0%
GCCTATTCCTGTATAAGGAA+TGG + Chr5:30138664-30138683 MsG0580026069.01.T01:intron 40.0%
GTAAGGCCTATTCCTGTATA+AGG + Chr5:30138659-30138678 MsG0580026069.01.T01:intron 40.0%
GTACCCAAAAACAAGTGCTT+GGG + Chr5:30140772-30140791 MsG0580026069.01.T01:CDS 40.0%
GTATATTAGTTACCCTGCTC+AGG + Chr5:30137779-30137798 MsG0580026069.01.T01:CDS 40.0%
GTCCTTAGGACTGTCTATTA+TGG + Chr5:30140470-30140489 MsG0580026069.01.T01:intron 40.0%
GTCTACATCCTAAACAGGAT+CGG + Chr5:30138164-30138183 MsG0580026069.01.T01:intron 40.0%
GTCTTAAATGGAGGAGCTTA+TGG + Chr5:30139542-30139561 MsG0580026069.01.T01:intron 40.0%
GTGGTATCTTCACTATTGAG+TGG + Chr5:30141034-30141053 MsG0580026069.01.T01:intron 40.0%
GTTCTGTAGTTCTTGTCCTT+TGG + Chr5:30139377-30139396 MsG0580026069.01.T01:intron 40.0%
TAACGAAATGCATCTCTAGC+AGG + Chr5:30137873-30137892 MsG0580026069.01.T01:intron 40.0%
TAAGATCTTGCAAGGTGAGA+TGG - Chr5:30138591-30138610 None:intergenic 40.0%
TAAGCTGGTCAAACCTCAAT+AGG - Chr5:30142075-30142094 None:intergenic 40.0%
TAATGCTTAGCTCACTGCTT+AGG - Chr5:30141545-30141564 None:intergenic 40.0%
TACCCAAAAACAAGTGCTTG+GGG + Chr5:30140773-30140792 MsG0580026069.01.T01:CDS 40.0%
TACTCAAATCATGGAAAGGG+AGG + Chr5:30142115-30142134 MsG0580026069.01.T01:intron 40.0%
TCCCCTTTCAACAAAGCAAT+GGG + Chr5:30141059-30141078 MsG0580026069.01.T01:intron 40.0%
TCTACATCCTAAACAGGATC+GGG + Chr5:30138165-30138184 MsG0580026069.01.T01:intron 40.0%
TCTGTAGTTCTTGTCCTTTG+GGG + Chr5:30139379-30139398 MsG0580026069.01.T01:intron 40.0%
TCTTAAAGTCGTGAGATCGT+AGG + Chr5:30138606-30138625 MsG0580026069.01.T01:intron 40.0%
TGACATGTGAGTACAACAAC+AGG - Chr5:30140593-30140612 None:intergenic 40.0%
TGCTAAAGTTCTACTTCCGT+TGG - Chr5:30139313-30139332 None:intergenic 40.0%
TGTGCAGTGATAAAGATCTG+GGG + Chr5:30137663-30137682 MsG0580026069.01.T01:intron 40.0%
TGTTAGCTAAAGAGCCAAAC+CGG - Chr5:30140979-30140998 None:intergenic 40.0%
TGTTGATACCGTCACATGTA+AGG + Chr5:30137954-30137973 MsG0580026069.01.T01:intron 40.0%
TTAAATATAGCTCCACACCC+AGG - Chr5:30138120-30138139 None:intergenic 40.0%
TTCTTGACTATAAGCCGGTT+TGG + Chr5:30140962-30140981 MsG0580026069.01.T01:CDS 40.0%
! AAAATATCCCATGCTGCTTC+TGG - Chr5:30140902-30140921 None:intergenic 40.0%
! AAATTTGCGAGTGGTAGTGA+TGG - Chr5:30141005-30141024 None:intergenic 40.0%
! AAGCACGTGAGCATAAGTTT+TGG - Chr5:30140115-30140134 None:intergenic 40.0%
! CATTTGCACTTCTAAAGGTC+AGG + Chr5:30139796-30139815 MsG0580026069.01.T01:intron 40.0%
! CTTTGAGTTACAGGGATTTG+GGG + Chr5:30139247-30139266 MsG0580026069.01.T01:CDS 40.0%
! GATTAACTAGGTGTTGCACT+TGG + Chr5:30137300-30137319 MsG0580026069.01.T01:intron 40.0%
! GCATCTTGCGTTTTTGAACT+TGG + Chr5:30137027-30137046 MsG0580026069.01.T01:CDS 40.0%
! GGACTGTGAGGTTTTCTAAA+AGG + Chr5:30139009-30139028 MsG0580026069.01.T01:intron 40.0%
! TAGTTCATAGATGGTGGTTG+TGG - Chr5:30142276-30142295 None:intergenic 40.0%
! TCGCAAATTTGTAAGCATCG+TGG + Chr5:30141015-30141034 MsG0580026069.01.T01:intron 40.0%
! TTGATACAGGGCTTTTCATG+TGG - Chr5:30141172-30141191 None:intergenic 40.0%
! TTTTTACTACATGCAGGTGC+TGG + Chr5:30139038-30139057 MsG0580026069.01.T01:intron 40.0%
!! ACCTTGCTTTTAAGGAATCC+TGG - Chr5:30140019-30140038 None:intergenic 40.0%
!! ACGAAGCGATTTGGTAAAGA+TGG + Chr5:30136992-30137011 MsG0580026069.01.T01:CDS 40.0%
!! AGGAAGGTACAAAGGTATTC+TGG - Chr5:30139756-30139775 None:intergenic 40.0%
!! ATACCCCAAGCACTTGTTTT+TGG - Chr5:30140779-30140798 None:intergenic 40.0%
!! CACGACTTTAAGATCTTGCA+AGG - Chr5:30138599-30138618 None:intergenic 40.0%
!! GGAAGGTACAAAGGTATTCT+GGG - Chr5:30139755-30139774 None:intergenic 40.0%
!! TACCCCAAGCACTTGTTTTT+GGG - Chr5:30140778-30140797 None:intergenic 40.0%
!! TTGATGGGTTCACTCGTATA+CGG + Chr5:30139714-30139733 MsG0580026069.01.T01:CDS 40.0%
!! TTTAGACAAGAGTACCAGAC+AGG - Chr5:30139846-30139865 None:intergenic 40.0%
!!! TGAACCGGTTCGGTTTTTTT+CGG - Chr5:30136759-30136778 None:intergenic 40.0%
!!! TTCGGTTTTTTTCGGTGGTT+GGG - Chr5:30136751-30136770 None:intergenic 40.0%
AACAACATCCAGAAGCAGCA+TGG + Chr5:30140891-30140910 MsG0580026069.01.T01:CDS 45.0%
AACAAGTGCTTGGGGTATGT+TGG + Chr5:30140781-30140800 MsG0580026069.01.T01:CDS 45.0%
AACACTGTGCTAAGAGCAGA+GGG + Chr5:30142357-30142376 MsG0580026069.01.T01:intron 45.0%
AACCGGAACGGTATGAAGAT+CGG - Chr5:30136714-30136733 None:intergenic 45.0%
AATATACGCCGACCAGATTC+CGG - Chr5:30136850-30136869 None:intergenic 45.0%
AATCGTGATTAGTGGAGGAG+TGG + Chr5:30138301-30138320 MsG0580026069.01.T01:intron 45.0%
ACAACATCCAGAAGCAGCAT+GGG + Chr5:30140892-30140911 MsG0580026069.01.T01:CDS 45.0%
ACAAGTGCTTGGGGTATGTT+GGG + Chr5:30140782-30140801 MsG0580026069.01.T01:CDS 45.0%
ACCACCGAAAAAAACCGAAC+CGG + Chr5:30136752-30136771 MsG0580026069.01.T01:five_prime_UTR 45.0%
ACCTCGGTAAGCAAGGTAAT+CGG + Chr5:30138140-30138159 MsG0580026069.01.T01:intron 45.0%
AGCATCAAGCACAATGTACC+TGG - Chr5:30139084-30139103 None:intergenic 45.0%
ATCACAGTCGCTTGTGGTTT+AGG + Chr5:30138064-30138083 MsG0580026069.01.T01:intron 45.0%
ATCCTGGTCCTTACATGTGA+CGG - Chr5:30137965-30137984 None:intergenic 45.0%
ATCGTGATTAGTGGAGGAGT+GGG + Chr5:30138302-30138321 MsG0580026069.01.T01:intron 45.0%
ATGAAACACCTCCAGCAACA+AGG - Chr5:30139776-30139795 None:intergenic 45.0%
CAGAGGGAAGTAAAAGAGTG+AGG + Chr5:30142373-30142392 MsG0580026069.01.T01:intron 45.0%
CATACCAGATCTACCTCAAG+TGG + Chr5:30141112-30141131 MsG0580026069.01.T01:intron 45.0%
CATTATCGGTGGGACTTAGT+GGG - Chr5:30138841-30138860 None:intergenic 45.0%
CCAAATGCTCCTCTTGGATA+TGG + Chr5:30139949-30139968 MsG0580026069.01.T01:CDS 45.0%
CCCCTTTCAACAAAGCAATG+GGG + Chr5:30141060-30141079 MsG0580026069.01.T01:intron 45.0%
CCCTTTCAACAAAGCAATGG+GGG + Chr5:30141061-30141080 MsG0580026069.01.T01:intron 45.0%
CGTGAGATCGTACCAAACTT+GGG + Chr5:30138230-30138249 MsG0580026069.01.T01:intron 45.0%
CTACATCCTAAACAGGATCG+GGG + Chr5:30138166-30138185 MsG0580026069.01.T01:intron 45.0%
CTACCCGAATGTTGAGAGAA+AGG - Chr5:30139485-30139504 None:intergenic 45.0%
CTCAAAGACTATCAGCAAGC+TGG + Chr5:30139921-30139940 MsG0580026069.01.T01:CDS 45.0%
CTCGCTTTAATGGAAGCTCA+CGG + Chr5:30136783-30136802 MsG0580026069.01.T01:exon 45.0%
CTTGCTGATAGTCTTTGAGC+TGG - Chr5:30139920-30139939 None:intergenic 45.0%
CTTTCTCTCAACATTCGGGT+AGG + Chr5:30139483-30139502 MsG0580026069.01.T01:intron 45.0%
CTTTGTACCTTCCTTGTTGC+TGG + Chr5:30139762-30139781 MsG0580026069.01.T01:CDS 45.0%
GGCTGATGAAATTGGTCCTT+AGG + Chr5:30140456-30140475 MsG0580026069.01.T01:intron 45.0%
GGTACCCAAAAACAAGTGCT+TGG + Chr5:30140771-30140790 MsG0580026069.01.T01:intron 45.0%
GGTTCATCACCTCGCTTTAA+TGG + Chr5:30136773-30136792 MsG0580026069.01.T01:exon 45.0%
GTCTTTAGCATAGGACTGTG+AGG + Chr5:30138997-30139016 MsG0580026069.01.T01:intron 45.0%
GTGTTTCCTGAAGAATGCCT+TGG - Chr5:30136875-30136894 None:intergenic 45.0%
TAAATGGAGGAGCTTATGGC+TGG + Chr5:30139546-30139565 MsG0580026069.01.T01:intron 45.0%
TAACACTGTGCTAAGAGCAG+AGG + Chr5:30142356-30142375 MsG0580026069.01.T01:intron 45.0%
TACATGTTTGCATGGCCAAG+TGG + Chr5:30140839-30140858 MsG0580026069.01.T01:CDS 45.0%
TATGAAGATCGGAGAGGTGA+AGG - Chr5:30136703-30136722 None:intergenic 45.0%
TCATTATCGGTGGGACTTAG+TGG - Chr5:30138842-30138861 None:intergenic 45.0%
TCGGAGTCTACATCCTAAAC+AGG + Chr5:30138159-30138178 MsG0580026069.01.T01:intron 45.0%
TCGTGAGATCGTACCAAACT+TGG + Chr5:30138229-30138248 MsG0580026069.01.T01:intron 45.0%
TCTTGACTACCATGCTGGTA+AGG + Chr5:30138642-30138661 MsG0580026069.01.T01:intron 45.0%
TGGGGGACATGTCTATTGTT+GGG + Chr5:30141914-30141933 MsG0580026069.01.T01:intron 45.0%
TGGTCGGCGTATATTTACCA+AGG + Chr5:30136855-30136874 MsG0580026069.01.T01:CDS 45.0%
TTCAGGTCAACGAAGCGATT+TGG + Chr5:30136983-30137002 MsG0580026069.01.T01:intron 45.0%
TTGACGTGTCAGTGTCTTGT+TGG + Chr5:30137573-30137592 MsG0580026069.01.T01:intron 45.0%
TTGATTAACCACGTGTCACG+CGG + Chr5:30137399-30137418 MsG0580026069.01.T01:intron 45.0%
TTTCTCACAGTGCGTATCCT+GGG + Chr5:30138100-30138119 MsG0580026069.01.T01:intron 45.0%
! ACCCCCATTGCTTTGTTGAA+AGG - Chr5:30141065-30141084 None:intergenic 45.0%
! AGGTTGCTGGCTGATGAAAT+TGG + Chr5:30140448-30140467 MsG0580026069.01.T01:intron 45.0%
! CAGCAACAAGGAAGGTACAA+AGG - Chr5:30139764-30139783 None:intergenic 45.0%
! CCCCATTGCTTTGTTGAAAG+GGG - Chr5:30141063-30141082 None:intergenic 45.0%
! CCCCCATTGCTTTGTTGAAA+GGG - Chr5:30141064-30141083 None:intergenic 45.0%
! TCAAAGTGTCAATGCCGTGT+CGG - Chr5:30137113-30137132 None:intergenic 45.0%
! TGATCTGACAGAAGCATGCA+TGG - Chr5:30142406-30142425 None:intergenic 45.0%
! TTCATAGATGGTGGTTGTGG+TGG - Chr5:30142273-30142292 None:intergenic 45.0%
! TTTTCTCACAGTGCGTATCC+TGG + Chr5:30138099-30138118 MsG0580026069.01.T01:intron 45.0%
!! CCATATCCAAGAGGAGCATT+TGG - Chr5:30139952-30139971 None:intergenic 45.0%
!! GGTACAAAGGTATTCTGGGA+TGG - Chr5:30139751-30139770 None:intergenic 45.0%
!!! GTTCGGTTTTTTTCGGTGGT+TGG - Chr5:30136752-30136771 None:intergenic 45.0%
AACACCTCCAGCAACAAGGA+AGG - Chr5:30139772-30139791 None:intergenic 50.0%
AGAAGGCGAGAACAAGGATG+CGG - Chr5:30136821-30136840 None:intergenic 50.0%
AGGAATAGGCCTTACCAGCA+TGG - Chr5:30138654-30138673 None:intergenic 50.0%
ATCCTAAACAGGATCGGGGA+AGG + Chr5:30138170-30138189 MsG0580026069.01.T01:intron 50.0%
ATCTTGCAAGGTGAGATGGC+TGG - Chr5:30138587-30138606 None:intergenic 50.0%
CGTGAGCTTCCATTAAAGCG+AGG - Chr5:30136785-30136804 None:intergenic 50.0%
CTCACTGCTTAGGCTACCTT+TGG - Chr5:30141535-30141554 None:intergenic 50.0%
CTCCGATCTTCATACCGTTC+CGG + Chr5:30136709-30136728 MsG0580026069.01.T01:five_prime_UTR 50.0%
GAACGGTATGAAGATCGGAG+AGG - Chr5:30136709-30136728 None:intergenic 50.0%
GATAACAGACCTCACCTGTC+TGG + Chr5:30139829-30139848 MsG0580026069.01.T01:intron 50.0%
GCACATCCAAATGCTCCTCT+TGG + Chr5:30139943-30139962 MsG0580026069.01.T01:CDS 50.0%
GCACTCCAATAAGACCACCA+AGG - Chr5:30137711-30137730 None:intergenic 50.0%
GCAGTGATAAAGATCTGGGG+TGG + Chr5:30137666-30137685 MsG0580026069.01.T01:intron 50.0%
GCCTCATATCCACTACCACT+TGG - Chr5:30140857-30140876 None:intergenic 50.0%
GCTTTAATGGAAGCTCACGG+CGG + Chr5:30136786-30136805 MsG0580026069.01.T01:exon 50.0%
GGCTTACTCAGTAAGGTTGC+TGG + Chr5:30140435-30140454 MsG0580026069.01.T01:intron 50.0%
GTCTGTCACACAATGTGTGC+AGG + Chr5:30138916-30138935 MsG0580026069.01.T01:intron 50.0%
GTGGGGGACATGTCTATTGT+TGG + Chr5:30141913-30141932 MsG0580026069.01.T01:intron 50.0%
TACCGTCACATGTAAGGACC+AGG + Chr5:30137960-30137979 MsG0580026069.01.T01:intron 50.0%
TCCGATTACCTTGCTTACCG+AGG - Chr5:30138144-30138163 None:intergenic 50.0%
TCGTCAATCACAGTCGCTTG+TGG + Chr5:30138058-30138077 MsG0580026069.01.T01:intron 50.0%
TGATTAACCACGTGTCACGC+GGG + Chr5:30137400-30137419 MsG0580026069.01.T01:intron 50.0%
TGTACCTTCCTTGTTGCTGG+AGG + Chr5:30139765-30139784 MsG0580026069.01.T01:CDS 50.0%
TTTGAACTTGGCGCAGAACG+TGG + Chr5:30137039-30137058 MsG0580026069.01.T01:CDS 50.0%
TTTGCATGGCCAAGTGGTAG+TGG + Chr5:30140845-30140864 MsG0580026069.01.T01:CDS 50.0%
! GAAATACTGGTGGTGCTCCT+TGG + Chr5:30137691-30137710 MsG0580026069.01.T01:CDS 50.0%
! GCAATGGGGGTGTGTTACTA+TGG + Chr5:30141074-30141093 MsG0580026069.01.T01:intron 50.0%
! GTGATAAAGATCTGGGGTGG+TGG + Chr5:30137669-30137688 MsG0580026069.01.T01:intron 50.0%
! TCTGCAACTTCTGCCACTTG+AGG - Chr5:30141128-30141147 None:intergenic 50.0%
! TCTGCCACTTGAGGTAGATC+TGG - Chr5:30141119-30141138 None:intergenic 50.0%
!! ACAAGAGTACCAGACAGGTG+AGG - Chr5:30139841-30139860 None:intergenic 50.0%
!! ATCTGGGGTGGTGGAAATAC+TGG + Chr5:30137678-30137697 MsG0580026069.01.T01:CDS 50.0%
!! GCCAAGTGGTAGTGGATATG+AGG + Chr5:30140853-30140872 MsG0580026069.01.T01:CDS 50.0%
!! GTGCTCCTTGGTGGTCTTAT+TGG + Chr5:30137703-30137722 MsG0580026069.01.T01:CDS 50.0%
!! TATTGCTGCTGTGGTGCTGT+GGG + Chr5:30140926-30140945 MsG0580026069.01.T01:CDS 50.0%
!! TGAGATCGTAGGTGCTGGAT+CGG + Chr5:30138617-30138636 MsG0580026069.01.T01:intron 50.0%
!! TGGTGGTCTTATTGGAGTGC+TGG + Chr5:30137711-30137730 MsG0580026069.01.T01:CDS 50.0%
!!! ACCGGTTCGGTTTTTTTCGG+TGG - Chr5:30136756-30136775 None:intergenic 50.0%
AGCGAGGTGATGAACCGGTT+CGG - Chr5:30136769-30136788 None:intergenic 55.0%
AGTCGTGAGATCGTAGGTGC+TGG + Chr5:30138612-30138631 MsG0580026069.01.T01:intron 55.0%
CGGGATCTTGACTACCATGC+TGG + Chr5:30138637-30138656 MsG0580026069.01.T01:intron 55.0%
GACCTTCCCCGATCCTGTTT+AGG - Chr5:30138175-30138194 None:intergenic 55.0%
TTAATGGAAGCTCACGGCGG+AGG + Chr5:30136789-30136808 MsG0580026069.01.T01:exon 55.0%
! ATACTGGTGGTGCTCCTTGG+TGG + Chr5:30137694-30137713 MsG0580026069.01.T01:CDS 55.0%
! CTTCTAATCGAAGGCGCGTC+AGG - Chr5:30137192-30137211 None:intergenic 55.0%
! GTATTGCTGCTGTGGTGCTG+TGG + Chr5:30140925-30140944 MsG0580026069.01.T01:CDS 55.0%
! TGGTGGTTGTGGTGGAAGAC+AGG - Chr5:30142265-30142284 None:intergenic 55.0%
!! GAGATCGTAGGTGCTGGATC+GGG + Chr5:30138618-30138637 MsG0580026069.01.T01:intron 55.0%
!! TGGGGTGGTGGAAATACTGG+TGG + Chr5:30137681-30137700 MsG0580026069.01.T01:CDS 55.0%
!! TTAGGGTTTTGGTCTCGGGC+CGG - Chr5:30138510-30138529 None:intergenic 55.0%
AGGCGAGAACAAGGATGCGG+CGG - Chr5:30136818-30136837 None:intergenic 60.0%
CACAGTGCGTATCCTGGGTG+TGG + Chr5:30138105-30138124 MsG0580026069.01.T01:intron 60.0%
CACGCGGGTGTGCAGAATGT+GGG + Chr5:30137415-30137434 MsG0580026069.01.T01:intron 60.0%
CGACGCAGAAGGCGAGAACA+AGG - Chr5:30136827-30136846 None:intergenic 60.0%
GAGATGGCTGGATTCGCAGG+TGG - Chr5:30138575-30138594 None:intergenic 60.0%
GGTGAGATGGCTGGATTCGC+AGG - Chr5:30138578-30138597 None:intergenic 60.0%
TCACGCGGGTGTGCAGAATG+TGG + Chr5:30137414-30137433 MsG0580026069.01.T01:intron 60.0%
!! TAGGGTTTTGGTCTCGGGCC+GGG - Chr5:30138509-30138528 None:intergenic 60.0%
AGTTACCAGGCCGCACGACC+CGG + Chr5:30138488-30138507 MsG0580026069.01.T01:intron 65.0%
CCAGATTCCGGCGACGCAGA+AGG - Chr5:30136838-30136857 None:intergenic 65.0%
CCTTCTGCGTCGCCGGAATC+TGG + Chr5:30136835-30136854 MsG0580026069.01.T01:CDS 65.0%
CTGCGTCGCCGGAATCTGGT+CGG + Chr5:30136839-30136858 MsG0580026069.01.T01:CDS 65.0%
GTTCTCGCCTTCTGCGTCGC+CGG + Chr5:30136828-30136847 MsG0580026069.01.T01:CDS 65.0%
CTGCACACCCGCGTGACACG+TGG - Chr5:30137410-30137429 None:intergenic 70.0%
TGGTCTCGGGCCGGGTCGTG+CGG - Chr5:30138501-30138520 None:intergenic 75.0%
! TCGGGCCGGGTCGTGCGGCC+TGG - Chr5:30138496-30138515 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr5 gene 30136692 30142537 30136692 ID=MsG0580026069.01;Name=MsG0580026069.01
Chr5 mRNA 30136692 30142537 30136692 ID=MsG0580026069.01.T01;Parent=MsG0580026069.01;Name=MsG0580026069.01.T01;_AED=0.42;_eAED=0.51;_QI=100|0.37|0.33|0.88|0.37|0.44|9|0|331
Chr5 exon 30136692 30136895 30136692 ID=MsG0580026069.01.T01:exon:7221;Parent=MsG0580026069.01.T01
Chr5 exon 30136988 30137085 30136988 ID=MsG0580026069.01.T01:exon:7222;Parent=MsG0580026069.01.T01
Chr5 exon 30137670 30137840 30137670 ID=MsG0580026069.01.T01:exon:7223;Parent=MsG0580026069.01.T01
Chr5 exon 30139054 30139084 30139054 ID=MsG0580026069.01.T01:exon:7224;Parent=MsG0580026069.01.T01
Chr5 exon 30139205 30139268 30139205 ID=MsG0580026069.01.T01:exon:7225;Parent=MsG0580026069.01.T01
Chr5 exon 30139659 30139812 30139659 ID=MsG0580026069.01.T01:exon:7226;Parent=MsG0580026069.01.T01
Chr5 exon 30139916 30139976 30139916 ID=MsG0580026069.01.T01:exon:7227;Parent=MsG0580026069.01.T01
Chr5 exon 30140772 30141024 30140772 ID=MsG0580026069.01.T01:exon:7228;Parent=MsG0580026069.01.T01
Chr5 exon 30142478 30142537 30142478 ID=MsG0580026069.01.T01:exon:7229;Parent=MsG0580026069.01.T01
Chr5 five_prime_UTR 30136692 30136791 30136692 ID=MsG0580026069.01.T01:five_prime_utr;Parent=MsG0580026069.01.T01
Chr5 CDS 30136792 30136895 30136792 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30136988 30137085 30136988 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30137670 30137840 30137670 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30139054 30139084 30139054 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30139205 30139268 30139205 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30139659 30139812 30139659 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30139916 30139976 30139916 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30140772 30141024 30140772 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Chr5 CDS 30142478 30142537 30142478 ID=MsG0580026069.01.T01:cds;Parent=MsG0580026069.01.T01
Gene Sequence

>MsG0580026069.01.T01

ATGGAAGCTCACGGCGGAGGTCTCCGCCGCATCCTTGTTCTCGCCTTCTGCGTCGCCGGAATCTGGTCGGCGTATATTTACCAAGGCATTCTTCAGGAAACACTGTCAACGAAGCGATTTGGTAAAGATGGTGAGAGATTTGAGCATCTTGCGTTTTTGAACTTGGCGCAGAACGTGGTTTGTTTAATTTGGTCATATATAATGATAAAGATCTGGGGTGGTGGAAATACTGGTGGTGCTCCTTGGTGGTCTTATTGGAGTGCTGGAATTACTAATACTATTGGTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGGTAAAATGTTATAACTTGAATTGTATAGTCGTAAACTATGGTGCTGGCGAAGTCCTCAAAAATGATTCCAGTTATTGTCTATGCTTCAACACTTCAATATTGTTATTCCTATACTTTGAGTTACAGGGATTTGGGATTATGTGGACAAATCTTAAATGTCTAACAAATGATCCACTTCAATGCAGTTATGTTGATGGGTTCACTCGTATACGGTATAAGATACACCATCCCAGAATACCTTTGTACCTTCCTTGTTGCTGGAGGTGTTTCATCATTTGCACTTCTAAAGACCAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCTCTTGGATATGGGCTATGTACCCAAAAACAAGTGCTTGGGGTATGTTGGGCATGAATTTATGGGGAACCATATACAATATGATTTACATGTTTGCATGGCCAAGTGGTAGTGGATATGAGGCAGTTAACTTTTGCAAACAACATCCAGAAGCAGCATGGGATATTTTACTGTATTGCTGCTGTGGTGCTGTGGGACAGAACTTTATATTCTTGACTATAAGCCGGTTTGGCTCTTTAGCTAACACTACCATCACTACCACTCGCAAATTTCTTTTTTTTGCTTTCTGGTATGAAAATGAAGCTCATATTGTTGAAAGATGTGTTTTGTAG
Protein sequence

>MsG0580026069.01.T01

MEAHGGGLRRILVLAFCVAGIWSAYIYQGILQETLSTKRFGKDGERFEHLAFLNLAQNVVCLIWSYIMIKIWGGGNTGGAPWWSYWSAGITNTIGPAMGIEALKYISYPAQVKCYNLNCIVVNYGAGEVLKNDSSYCLCFNTSILLFLYFELQGFGIMWTNLKCLTNDPLQCSYVDGFTRIRYKIHHPRIPLYLPCCWRCFIICTSKDQLKDYQQAGTSKCSSWIWAMYPKTSAWGMLGMNLWGTIYNMIYMFAWPSGSGYEAVNFCKQHPEAAWDILLYCCCGAVGQNFIFLTISRFGSLANTTITTTRKFLFFAFWYENEAHIVERCVL*