AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048684.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048684.01.T01 MTR_2g013490 95.385 325 6 1 1 325 1 316 0.0 628
MsG0080048684.01.T01 MTR_4g078640 32.661 248 136 9 1 239 1 226 1.50e-30 122
MsG0080048684.01.T01 MTR_4g070380 33.761 234 127 8 12 239 15 226 9.26e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048684.01.T01 AT5G01230 88.924 316 25 2 1 315 1 307 0.0 572
MsG0080048684.01.T01 AT5G01230 100.000 57 0 0 1 57 1 57 6.27e-35 122
MsG0080048684.01.T01 AT4G25730 34.137 249 131 10 1 240 1 225 6.59e-32 126

Find 115 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGCAGTGATATATTTA+TGG 0.124725 contig39end:+29651 MsG0080048684.01.T01:three_prime_UTR
CACTGATTCGTAGTGTTATT+TGG 0.132341 contig39end:+29616 MsG0080048684.01.T01:three_prime_UTR
AATGGGATATACACCTTATT+AGG 0.161234 contig39end:-29389 None:intergenic
ATCGGAAAAGATTATAAGTT+TGG 0.240764 contig39end:-29778 None:intergenic
AGGAATAATTTGTATTCATT+TGG 0.244032 contig39end:-29741 None:intergenic
GCTAATTACTTACTTCTTGC+AGG 0.249139 contig39end:+27822 MsG0080048684.01.T01:CDS
TTTGTTGGATAGTTTGATTC+AGG 0.249399 contig39end:+24324 MsG0080048684.01.T01:five_prime_UTR
AGAAGCCGATGAAGATCTTT+TGG 0.261957 contig39end:-29037 None:intergenic
CTAGCTTGCGGGGACCTTAC+TGG 0.280561 contig39end:+29413 MsG0080048684.01.T01:CDS
TTCATTGCGAAGATATTTAG+AGG 0.318467 contig39end:+27885 MsG0080048684.01.T01:CDS
ATATCCCATTTCTAGCTTGC+GGG 0.337528 contig39end:+29402 MsG0080048684.01.T01:CDS
GGAATAATTTGTATTCATTT+GGG 0.341056 contig39end:-29740 None:intergenic
CCGATGGATAATGTTGATAA+TGG 0.357652 contig39end:+29796 MsG0080048684.01.T01:three_prime_UTR
CAAATTGCTATTAGCCTGTA+TGG 0.362181 contig39end:-29916 None:intergenic
AACTCTAGAGCTCTCTTGTA+AGG 0.363418 contig39end:-29524 None:intergenic
TGCTCCAGGCAGCTGGAGTC+AGG 0.367296 contig39end:+24939 MsG0080048684.01.T01:CDS
TGTGATTCTGTGAAATTTGT+TGG 0.370019 contig39end:+24309 MsG0080048684.01.T01:five_prime_UTR
GCATCAGGTGCAAGCTTGGC+TGG 0.374216 contig39end:-25900 None:intergenic
GTTTGGGTGATGATTATCTA+AGG 0.378559 contig39end:-29761 None:intergenic
GCAAAGCTTCAAGGGATAAG+AGG 0.379131 contig39end:+24502 MsG0080048684.01.T01:CDS
CTTTGCATCAGGTGCAAGCT+TGG 0.398733 contig39end:-25904 None:intergenic
TATCCACTGCCTAAAGTTGC+TGG 0.400318 contig39end:+29455 MsG0080048684.01.T01:CDS
CAAATACCTGACAGTATAGA+AGG 0.404894 contig39end:-27920 None:intergenic
AGGTCCCCGCAAGCTAGAAA+TGG 0.414251 contig39end:-29407 None:intergenic
TCGGAAAAGATTATAAGTTT+GGG 0.417182 contig39end:-29777 None:intergenic
GAGAAGGTTGGAAGTCCATC+AGG 0.420443 contig39end:+29061 MsG0080048684.01.T01:CDS
ACTAAAGTTCTTACCTATGC+TGG 0.426966 contig39end:-28620 None:intergenic
CAGCCAATGGCTCCGATTGA+AGG 0.431915 contig39end:+26403 MsG0080048684.01.T01:CDS
ATGGGATATACACCTTATTA+GGG 0.432233 contig39end:-29388 None:intergenic
ATAGTTTGATTCAGGAGAAA+AGG 0.443837 contig39end:+24332 MsG0080048684.01.T01:five_prime_UTR
TGGAAAACTTACTTTGCATC+AGG 0.444078 contig39end:-25915 None:intergenic
AAATCAATAGCTACAATAAG+AGG 0.445424 contig39end:-26379 None:intergenic
TATGTGCTGCTCCAGGCAGC+TGG 0.452462 contig39end:+24932 MsG0080048684.01.T01:CDS
TGCTTACTGCAAGTATGAGT+TGG 0.458021 contig39end:-27486 None:intergenic
AAACCATGGGCAAAGCTTCA+AGG 0.459913 contig39end:+24493 MsG0080048684.01.T01:exon
GAGTTTGCAGATTGTGTTAG+TGG 0.463559 contig39end:+29353 MsG0080048684.01.T01:intron
CATCGGCTTCTTGAGAAGGT+TGG 0.470461 contig39end:+29049 MsG0080048684.01.T01:CDS
TTCATCCATGTCATGAAGTC+CGG 0.472049 contig39end:-27452 None:intergenic
ATCAGTGGATATGCAAGATC+AGG 0.472705 contig39end:-29600 None:intergenic
TTACTGGATATGATTCTGAT+AGG 0.474435 contig39end:+29429 MsG0080048684.01.T01:CDS
ATCCCTTGAAGCTTTGCCCA+TGG 0.475121 contig39end:-24496 None:intergenic
GCTTACTGCAAGTATGAGTT+GGG 0.475427 contig39end:-27485 None:intergenic
TGAAGGTGTTATCCAGGTGC+AGG 0.479392 contig39end:+26420 MsG0080048684.01.T01:CDS
GGCTTTGCAAAAGTCACCAC+AGG 0.483167 contig39end:-28580 None:intergenic
ATCCACTGCCTAAAGTTGCT+GGG 0.488195 contig39end:+29456 MsG0080048684.01.T01:CDS
CTAATTACTTACTTCTTGCA+GGG 0.491536 contig39end:+27823 MsG0080048684.01.T01:CDS
CCATCAGGGGTAGATGATAC+AGG 0.496409 contig39end:+29076 MsG0080048684.01.T01:CDS
AGCTATTGATTTGCAGCCAA+TGG 0.497084 contig39end:+26390 MsG0080048684.01.T01:CDS
TATATCCCATTTCTAGCTTG+CGG 0.497714 contig39end:+29401 MsG0080048684.01.T01:CDS
TCTTCATCGGCTTCTTGAGA+AGG 0.501095 contig39end:+29045 MsG0080048684.01.T01:CDS
AGTACCTGACTCCAGCTGCC+TGG 0.508337 contig39end:-24943 None:intergenic
ACACCTTCAATCGGAGCCAT+TGG 0.510050 contig39end:-26406 None:intergenic
TTGGATTGAATCCTTCTGGA+GGG 0.511479 contig39end:-29018 None:intergenic
GGGGCAATAGGAGGTTGTAC+TGG 0.511552 contig39end:-29500 None:intergenic
GTGGTTGGAAGGCCCTAATA+AGG 0.511729 contig39end:+29376 MsG0080048684.01.T01:CDS
GGTCCCCGCAAGCTAGAAAT+GGG 0.513086 contig39end:-29406 None:intergenic
TCCGATTGAAGGTGTTATCC+AGG 0.517786 contig39end:+26414 MsG0080048684.01.T01:CDS
TAGTTATATCACCCTGCACC+TGG 0.518978 contig39end:-26432 None:intergenic
CACAAGCCTTCTATACTGTC+AGG 0.519250 contig39end:+27914 MsG0080048684.01.T01:CDS
TATCAGAATCATATCCAGTA+AGG 0.519570 contig39end:-29427 None:intergenic
ATTGAAGAAGCCATGAACTT+AGG 0.519813 contig39end:-24202 MsG0080048683.01.T01:CDS
ATATGCAAGATCAGGAATCC+AGG 0.523232 contig39end:-29592 None:intergenic
CAGGTGCAAGCTTGGCTGGA+AGG 0.527605 contig39end:-25896 None:intergenic
ACTCTAGAGCTCTCTTGTAA+GGG 0.527637 contig39end:-29523 None:intergenic
TGCGAAGATATTTAGAGGAA+AGG 0.528045 contig39end:+27890 MsG0080048684.01.T01:CDS
TCAATCCAAAAGATCTTCAT+CGG 0.528148 contig39end:+29032 MsG0080048684.01.T01:CDS
GTAGATTTATGTGCTGCTCC+AGG 0.528472 contig39end:+24925 MsG0080048684.01.T01:CDS
TGTGTTAGTGGGTGGTTGGA+AGG 0.530748 contig39end:+29365 MsG0080048684.01.T01:CDS
ACCTGGATAACACCTTCAAT+CGG 0.534040 contig39end:-26415 None:intergenic
TGGATTGAATCCTTCTGGAG+GGG 0.538206 contig39end:-29017 None:intergenic
TACCGAAAAGCGAAAGAAGA+AGG 0.538413 contig39end:+24620 MsG0080048684.01.T01:CDS
GCCGACCTTGTTGTGTGCGA+TGG 0.542550 contig39end:+27185 MsG0080048684.01.T01:CDS
AACCATGGGCAAAGCTTCAA+GGG 0.544253 contig39end:+24494 MsG0080048684.01.T01:exon
AGTTTGCAGATTGTGTTAGT+GGG 0.550426 contig39end:+29354 MsG0080048684.01.T01:intron
CCTGTATCATCTACCCCTGA+TGG 0.551247 contig39end:-29076 None:intergenic
AGATTGTGTTAGTGGGTGGT+TGG 0.553179 contig39end:+29361 MsG0080048684.01.T01:intron
AGTAGTCGTAATTCCAGCAT+AGG 0.557095 contig39end:+28607 MsG0080048684.01.T01:CDS
CAATGTTACTCATGTACTGA+AGG 0.573026 contig39end:+27851 MsG0080048684.01.T01:CDS
TCCACTGCCTAAAGTTGCTG+GGG 0.574703 contig39end:+29457 MsG0080048684.01.T01:CDS
GAAAATTACTCCCCTCCAGA+AGG 0.574957 contig39end:+29007 MsG0080048684.01.T01:CDS
TTGCAGATTGTGTTAGTGGG+TGG 0.575776 contig39end:+29357 MsG0080048684.01.T01:intron
CTCTAGAGCTCTCTTGTAAG+GGG 0.577035 contig39end:-29522 None:intergenic
GAAAAGCGAAAGAAGAAGGT+TGG 0.578774 contig39end:+24624 MsG0080048684.01.T01:CDS
CAAAGCTTCAAGGGATAAGA+GGG 0.579751 contig39end:+24503 MsG0080048684.01.T01:CDS
CTCATGTACTGAAGGAAGGA+GGG 0.582274 contig39end:+27859 MsG0080048684.01.T01:CDS
AGAACTTGAAAATCTCTCCC+TGG 0.583460 contig39end:+29574 MsG0080048684.01.T01:CDS
GTGTGCGATGGTGCTCCTGA+TGG 0.586485 contig39end:+27197 MsG0080048684.01.T01:CDS
TATCCCATTTCTAGCTTGCG+GGG 0.586932 contig39end:+29403 MsG0080048684.01.T01:CDS
TAATGCTCGGACTGCTGAAG+TGG 0.587470 contig39end:+26453 MsG0080048684.01.T01:CDS
GTTTCTTAGGCAAGTAAGTG+AGG 0.591445 contig39end:+24467 MsG0080048684.01.T01:intron
GTTACTCATGTACTGAAGGA+AGG 0.596222 contig39end:+27855 MsG0080048684.01.T01:CDS
TTTGGATTGAATCCTTCTGG+AGG 0.598385 contig39end:-29019 None:intergenic
GAAGAAGCCATGAACTTAGG+AGG 0.598700 contig39end:-24199 MsG0080048683.01.T01:CDS
CTAGAGCTCTCTTGTAAGGG+GGG 0.605069 contig39end:-29520 None:intergenic
AGAAGGTTGGAAGTCCATCA+GGG 0.611108 contig39end:+29062 MsG0080048684.01.T01:CDS
CAAATAACACTACGAATCAG+TGG 0.612508 contig39end:-29615 None:intergenic
ACTCATGTACTGAAGGAAGG+AGG 0.615741 contig39end:+27858 MsG0080048684.01.T01:CDS
CCATTATCAACATTATCCAT+CGG 0.624889 contig39end:-29796 None:intergenic
ACCATCGCACACAACAAGGT+CGG 0.624891 contig39end:-27186 None:intergenic
AGTAAGTGAGGAATAAACCA+TGG 0.627845 contig39end:+24479 MsG0080048684.01.T01:exon
TATGCAAGATCAGGAATCCA+GGG 0.628400 contig39end:-29591 None:intergenic
GAGCACCATCGCACACAACA+AGG 0.633636 contig39end:-27190 None:intergenic
TCTAGAGCTCTCTTGTAAGG+GGG 0.635566 contig39end:-29521 None:intergenic
ATAATATGAGTAAAATTGTG+AGG 0.639750 contig39end:+29860 MsG0080048684.01.T01:three_prime_UTR
GAAGGTGTTATCCAGGTGCA+GGG 0.645167 contig39end:+26421 MsG0080048684.01.T01:CDS
AGGGTGATATAACTAATGCT+CGG 0.647655 contig39end:+26440 MsG0080048684.01.T01:CDS
GTAAGTGAGGAATAAACCAT+GGG 0.651712 contig39end:+24480 MsG0080048684.01.T01:exon
AAAGACTCGGAAGAAAGGAA+AGG 0.655032 contig39end:-29710 None:intergenic
GCTTTGCAAAAGTCACCACA+GGG 0.664958 contig39end:-28579 None:intergenic
TAATTACTTACTTCTTGCAG+GGG 0.666841 contig39end:+27824 MsG0080048684.01.T01:CDS
TAGAGCTCTCTTGTAAGGGG+GGG 0.669752 contig39end:-29519 None:intergenic
CCACTGCCTAAAGTTGCTGG+GGG 0.698850 contig39end:+29458 MsG0080048684.01.T01:CDS
AGAATCTCGTACAGTGTACG+AGG 0.708517 contig39end:-24227 MsG0080048683.01.T01:CDS
AGTTACCGGACTTCATGACA+TGG 0.714363 contig39end:+27447 MsG0080048684.01.T01:intron
GAAGGTTGGAAGTCCATCAG+GGG 0.734678 contig39end:+29063 MsG0080048684.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATATAAATGAAAACT+TGG - contig39end:25505-25524 None:intergenic 10.0%
!!! TAAATTTTTAAAGTATTATC+CGG - contig39end:25849-25868 None:intergenic 10.0%
!!! TTTTATATAAATGAAAACTT+GGG - contig39end:25504-25523 None:intergenic 10.0%
!! AAAAAAAATAGTAACAAACA+AGG - contig39end:28648-28667 None:intergenic 15.0%
!! AATTACATTTAAATGATACT+AGG - contig39end:25109-25128 None:intergenic 15.0%
!! CTAAAATATAATTCACTTTA+AGG + contig39end:25349-25368 MsG0080048684.01.T01:intron 15.0%
!! GAAAAAAGAAAAAGAAATTA+AGG - contig39end:26849-26868 None:intergenic 15.0%
!! TATTAGATTTGAATCTTTAA+CGG + contig39end:28870-28889 MsG0080048684.01.T01:intron 15.0%
!! TTTATATAAATGAAAACTTG+GGG - contig39end:25503-25522 None:intergenic 15.0%
!!! CTTAAAGTGAATTATATTTT+AGG - contig39end:25351-25370 None:intergenic 15.0%
!!! TACTTTAAAAATTTATATGC+AGG + contig39end:25854-25873 MsG0080048684.01.T01:intron 15.0%
!!! TTTTTTTTTGTTGGTTTTTT+GGG + contig39end:24557-24576 MsG0080048684.01.T01:intron 15.0%
!!! TTTTTTTTTTGTTGGTTTTT+TGG + contig39end:24556-24575 MsG0080048684.01.T01:intron 15.0%
!! AGTTATAAAAGCTAACTAAA+AGG - contig39end:28043-28062 None:intergenic 20.0%
!! AGTTTCTTTATGAATTGTTA+TGG + contig39end:28700-28719 MsG0080048684.01.T01:intron 20.0%
!! ATAATATGAGTAAAATTGTG+AGG + contig39end:29860-29879 MsG0080048684.01.T01:three_prime_UTR 20.0%
!! ATAATTAAAATCAGCTTTCA+AGG - contig39end:24722-24741 None:intergenic 20.0%
!! ATTCTTAAGATAAGTTTAAG+AGG - contig39end:25246-25265 None:intergenic 20.0%
!! CAATAAATTCAAAAGAAAAC+AGG - contig39end:26193-26212 None:intergenic 20.0%
!! CTAAATAACTCATAATAAAG+GGG + contig39end:28466-28485 MsG0080048684.01.T01:intron 20.0%
!! CTATCTCTAATTATATATTC+AGG - contig39end:24802-24821 None:intergenic 20.0%
!! GCTAAATAACTCATAATAAA+GGG + contig39end:28465-28484 MsG0080048684.01.T01:intron 20.0%
!! TAAAAAAGATAACACCATTA+CGG + contig39end:25683-25702 MsG0080048684.01.T01:intron 20.0%
!! TGCTAAATAACTCATAATAA+AGG + contig39end:28464-28483 MsG0080048684.01.T01:intron 20.0%
!! TTAATGTATTAGAATTGACA+TGG - contig39end:27365-27384 None:intergenic 20.0%
!! TTATATAAATGAAAACTTGG+GGG - contig39end:25502-25521 None:intergenic 20.0%
!! TTGGTTGTAGTTTAAAAATT+TGG + contig39end:27411-27430 MsG0080048684.01.T01:intron 20.0%
!!! AAAAGGATACTATAGTTTTA+AGG - contig39end:26028-26047 None:intergenic 20.0%
!!! AATATAATTCACTTTAAGGA+AGG + contig39end:25353-25372 MsG0080048684.01.T01:intron 20.0%
!!! AGGAATAATTTGTATTCATT+TGG - contig39end:29744-29763 None:intergenic 20.0%
!!! CTGTTCTTTTTTTTTTTTGT+TGG + contig39end:24548-24567 MsG0080048684.01.T01:intron 20.0%
!!! GAAGAATTTAACATTTTTGA+AGG + contig39end:24683-24702 MsG0080048684.01.T01:CDS 20.0%
!!! GACAAAATAATTGACTTTAA+AGG + contig39end:28249-28268 MsG0080048684.01.T01:intron 20.0%
!!! GGAATAATTTGTATTCATTT+GGG - contig39end:29743-29762 None:intergenic 20.0%
!!! GGTGTATAGTTTAATTTAAA+CGG + contig39end:27727-27746 MsG0080048684.01.T01:intron 20.0%
!!! GTATATGGAATTATGATTTT+TGG - contig39end:28524-28543 None:intergenic 20.0%
!!! TCATGTATACTTAATTTTCA+TGG + contig39end:29303-29322 MsG0080048684.01.T01:intron 20.0%
!!! TCATTTCTGGAAATAAATTA+TGG + contig39end:28081-28100 MsG0080048684.01.T01:intron 20.0%
!!! TGATAGTTGATATTTCATTA+TGG + contig39end:27573-27592 MsG0080048684.01.T01:intron 20.0%
!!! TGTAACTATTTATCTCTTTT+AGG + contig39end:27533-27552 MsG0080048684.01.T01:intron 20.0%
! AAACAATGTTTAAAAGGATG+AGG - contig39end:26166-26185 None:intergenic 25.0%
! AAATCAATAGCTACAATAAG+AGG - contig39end:26382-26401 None:intergenic 25.0%
! AACAAGCATATGTCTATTAA+AGG - contig39end:27650-27669 None:intergenic 25.0%
! ACAAAAAGCAACTTAGTATA+TGG - contig39end:28539-28558 None:intergenic 25.0%
! AGTGAAATAATGAAAAGACA+TGG + contig39end:26914-26933 MsG0080048684.01.T01:intron 25.0%
! ATAATTACGACCAACATAAA+AGG - contig39end:26045-26064 None:intergenic 25.0%
! ATACATTAACTCTGATATGT+AGG + contig39end:27376-27395 MsG0080048684.01.T01:intron 25.0%
! ATCGGAAAAGATTATAAGTT+TGG - contig39end:29781-29800 None:intergenic 25.0%
! ATCTAATAATTGCAAGTGTT+TGG - contig39end:28858-28877 None:intergenic 25.0%
! ATGATTAACAATCTACATGT+AGG - contig39end:29211-29230 None:intergenic 25.0%
! ATTACTATCTCTGCTAAAAA+TGG - contig39end:24770-24789 None:intergenic 25.0%
! ATTGCCATGTATAAACAATA+GGG + contig39end:25770-25789 MsG0080048684.01.T01:intron 25.0%
! ATTTAGATATGATCATGAGT+AGG - contig39end:28405-28424 None:intergenic 25.0%
! CGCATTTATTAGATTAGATA+AGG - contig39end:27692-27711 None:intergenic 25.0%
! GGAAGAAAACAATGTTTAAA+AGG - contig39end:26172-26191 None:intergenic 25.0%
! TAAGATAAGTTTAAGAGGAA+GGG - contig39end:25241-25260 None:intergenic 25.0%
! TATAAAAGCTAACTAAAAGG+TGG - contig39end:28040-28059 None:intergenic 25.0%
! TATTGCCATGTATAAACAAT+AGG + contig39end:25769-25788 MsG0080048684.01.T01:intron 25.0%
! TCGGAAAAGATTATAAGTTT+GGG - contig39end:29780-29799 None:intergenic 25.0%
! TGAAACTATAAGTAATACAG+TGG - contig39end:24872-24891 None:intergenic 25.0%
! TGATTAACAATCTACATGTA+GGG - contig39end:29210-29229 None:intergenic 25.0%
! TGATTTGATGTTAGCTAAAT+TGG + contig39end:24581-24600 MsG0080048684.01.T01:intron 25.0%
! TGCTCTTAAGAATTTCTATA+AGG - contig39end:29113-29132 None:intergenic 25.0%
! TGCTGTATTATCTTATGTTA+AGG + contig39end:26249-26268 MsG0080048684.01.T01:intron 25.0%
! TGTAATTGACATGAATATCT+TGG + contig39end:25122-25141 MsG0080048684.01.T01:intron 25.0%
! TTAAGATAAGTTTAAGAGGA+AGG - contig39end:25242-25261 None:intergenic 25.0%
!! AAACAGCAAATGATTTTTGA+TGG - contig39end:25660-25679 None:intergenic 25.0%
!! AAACTTATAATCTTTTCCGA+TGG + contig39end:29780-29799 MsG0080048684.01.T01:three_prime_UTR 25.0%
!! AACAGCAAATGATTTTTGAT+GGG - contig39end:25659-25678 None:intergenic 25.0%
!! ACTATAGTATCCTTTTATGT+TGG + contig39end:26032-26051 MsG0080048684.01.T01:intron 25.0%
!! ATTACTTCCATTGTTTTCAA+AGG - contig39end:28132-28151 None:intergenic 25.0%
!! ATTTCATTATGGTTACCTTT+TGG + contig39end:27584-27603 MsG0080048684.01.T01:intron 25.0%
!! ATTTTCCATAGCTTAGTAAT+TGG + contig39end:28727-28746 MsG0080048684.01.T01:intron 25.0%
!!! AGTTATTTTTTAACTCCTAC+AGG - contig39end:28327-28346 None:intergenic 25.0%
!!! CAATTATTTTGTCAACCAAT+TGG - contig39end:28242-28261 None:intergenic 25.0%
!!! GTTGTATGTTTTTGTTTCTT+AGG + contig39end:24454-24473 MsG0080048684.01.T01:intron 25.0%
!!! TGTTTCTGCTCTAAAATTTA+TGG + contig39end:26705-26724 MsG0080048684.01.T01:intron 25.0%
!!! TTAAAAAAAGCATCAACTCA+AGG + contig39end:29545-29564 MsG0080048684.01.T01:CDS 25.0%
AAACAGCTAAATTCAACTAG+TGG - contig39end:28824-28843 None:intergenic 30.0%
AACAAAGCATATAATCTCCA+TGG - contig39end:25938-25957 None:intergenic 30.0%
AACTACCAATTACTAAGCTA+TGG - contig39end:28735-28754 None:intergenic 30.0%
AAGATAAGTTTAAGAGGAAG+GGG - contig39end:25240-25259 None:intergenic 30.0%
AATAAAGGGGAAAATGGTAA+AGG + contig39end:28479-28498 MsG0080048684.01.T01:intron 30.0%
AATAAAGTGACACTCATTTC+TGG + contig39end:28068-28087 MsG0080048684.01.T01:intron 30.0%
AATAATGAAAAGACATGGTG+TGG + contig39end:26919-26938 MsG0080048684.01.T01:intron 30.0%
AATGGGATATACACCTTATT+AGG - contig39end:29392-29411 None:intergenic 30.0%
AATGTCTCAGAAATAGTGAA+AGG + contig39end:24827-24846 MsG0080048684.01.T01:intron 30.0%
ACTCATAATAAAGGGGAAAA+TGG + contig39end:28473-28492 MsG0080048684.01.T01:intron 30.0%
AGGGATAAATTTATTCTCGT+TGG - contig39end:27331-27350 None:intergenic 30.0%
ATAGTTTGATTCAGGAGAAA+AGG + contig39end:24332-24351 MsG0080048684.01.T01:five_prime_UTR 30.0%
ATCTTGGTTTAGATTTCTTC+TGG + contig39end:25138-25157 MsG0080048684.01.T01:intron 30.0%
ATGAAAACCAAATCAGACTT+AGG + contig39end:25706-25725 MsG0080048684.01.T01:intron 30.0%
ATGAACTGAACAAAAGCAAT+TGG - contig39end:26871-26890 None:intergenic 30.0%
ATGGGATATACACCTTATTA+GGG - contig39end:29391-29410 None:intergenic 30.0%
ATGTCAATGAATGCATTTAC+AGG - contig39end:25988-26007 None:intergenic 30.0%
ATTCATACCTAAGTCTGATT+TGG - contig39end:25716-25735 None:intergenic 30.0%
CAAAAGAAAGCAGAAATATG+TGG - contig39end:26821-26840 None:intergenic 30.0%
CAATTACCAAACACAAACTA+TGG + contig39end:25025-25044 MsG0080048684.01.T01:intron 30.0%
CCATTATCAACATTATCCAT+CGG - contig39end:29799-29818 None:intergenic 30.0%
CTAATTACTTACTTCTTGCA+GGG + contig39end:27823-27842 MsG0080048684.01.T01:CDS 30.0%
CTCTTGCAGTGATATATTTA+TGG + contig39end:29651-29670 MsG0080048684.01.T01:three_prime_UTR 30.0%
GGATTTGAATTTAAACCTAG+AGG + contig39end:25374-25393 MsG0080048684.01.T01:intron 30.0%
GTAAATGCATTCATTGACAT+AGG + contig39end:25988-26007 MsG0080048684.01.T01:intron 30.0%
GTCAAACTATACACATGAAT+TGG - contig39end:26983-27002 None:intergenic 30.0%
GTTGTATTTATCAAGAGAGT+AGG - contig39end:28285-28304 None:intergenic 30.0%
TAACTGATATCACAACACAA+AGG - contig39end:25285-25304 None:intergenic 30.0%
TAATAATTGCAAGTGTTTGG+AGG - contig39end:28855-28874 None:intergenic 30.0%
TAATTACTTACTTCTTGCAG+GGG + contig39end:27824-27843 MsG0080048684.01.T01:CDS 30.0%
TAGAACACAAAAACGAATAC+AGG - contig39end:24283-24302 None:intergenic 30.0%
TAGATGATACAGGTATATGT+CGG + contig39end:29086-29105 MsG0080048684.01.T01:intron 30.0%
TATCAGAATCATATCCAGTA+AGG - contig39end:29430-29449 None:intergenic 30.0%
TCAAATCATTTGTAGCTGTT+TGG - contig39end:27273-27292 None:intergenic 30.0%
TCAATCCAAAAGATCTTCAT+CGG + contig39end:29032-29051 MsG0080048684.01.T01:CDS 30.0%
TCCAATTCCTGAAATCTTAA+TGG - contig39end:27959-27978 None:intergenic 30.0%
TCTAATTCTAATGACAAGAG+TGG - contig39end:26558-26577 None:intergenic 30.0%
TGTGATTCTGTGAAATTTGT+TGG + contig39end:24309-24328 MsG0080048684.01.T01:five_prime_UTR 30.0%
TTACTGGATATGATTCTGAT+AGG + contig39end:29429-29448 MsG0080048684.01.T01:CDS 30.0%
TTCATTGCGAAGATATTTAG+AGG + contig39end:27885-27904 MsG0080048684.01.T01:CDS 30.0%
TTGCCATGTATAAACAATAG+GGG + contig39end:25771-25790 MsG0080048684.01.T01:intron 30.0%
TTTGTTGGATAGTTTGATTC+AGG + contig39end:24324-24343 MsG0080048684.01.T01:five_prime_UTR 30.0%
! AAACAATGATAATGACCTCT+AGG - contig39end:25392-25411 None:intergenic 30.0%
! AACAAAAACCTTTTTCCACT+AGG - contig39end:26772-26791 None:intergenic 30.0%
! GTGATAATTAACAGAGTGTT+TGG - contig39end:26290-26309 None:intergenic 30.0%
! TAGTTATGAATCTTTTGACG+AGG + contig39end:28900-28919 MsG0080048684.01.T01:intron 30.0%
! TATGCATTTTCTTTACCATC+AGG - contig39end:27215-27234 None:intergenic 30.0%
! TATTTTGCTCTTTTCCATAC+AGG + contig39end:29902-29921 MsG0080048684.01.T01:three_prime_UTR 30.0%
! TCCAGAGTTTTACCAAAATT+CGG + contig39end:28201-28220 MsG0080048684.01.T01:intron 30.0%
! TTCCAAACCTTTGAAAACAA+TGG + contig39end:28122-28141 MsG0080048684.01.T01:intron 30.0%
! TTCCATTGTTTTCAAAGGTT+TGG - contig39end:28127-28146 None:intergenic 30.0%
!! ATGTAGGCTTTTTCTCATTT+TGG + contig39end:27392-27411 MsG0080048684.01.T01:intron 30.0%
!! GACTATTTCTAAGAAACAAG+TGG - contig39end:25604-25623 None:intergenic 30.0%
!! TGCTATTTCAAACAATGTGT+AGG - contig39end:27984-28003 None:intergenic 30.0%
!!! AATTTCGTTCTTTTTTGCAG+GGG + contig39end:24891-24910 MsG0080048684.01.T01:intron 30.0%
!!! ATTGTTTCTGTTCCGAATTT+TGG - contig39end:28216-28235 None:intergenic 30.0%
!!! CAATTTCGTTCTTTTTTGCA+GGG + contig39end:24890-24909 MsG0080048684.01.T01:intron 30.0%
!!! TCAATTTCGTTCTTTTTTGC+AGG + contig39end:24889-24908 MsG0080048684.01.T01:intron 30.0%
AACAAAAAGACTCGGAAGAA+AGG - contig39end:29718-29737 None:intergenic 35.0%
AACAGAAACAATGAGCCAAT+TGG + contig39end:28224-28243 MsG0080048684.01.T01:intron 35.0%
AAGAAACCGTAATGTCAATG+AGG + contig39end:25072-25091 MsG0080048684.01.T01:intron 35.0%
ACATCACCAAAGGATCAATT+TGG - contig39end:27031-27050 None:intergenic 35.0%
ACATCTGTCAACAGAATTGA+AGG - contig39end:26496-26515 None:intergenic 35.0%
ACCTCACATAACACATATCA+GGG - contig39end:26125-26144 None:intergenic 35.0%
ACTAAAGTTCTTACCTATGC+TGG - contig39end:28623-28642 None:intergenic 35.0%
ACTCAAATCGTGTTTCGAAA+TGG - contig39end:26532-26551 None:intergenic 35.0%
AGAAACCGTAATGTCAATGA+GGG + contig39end:25073-25092 MsG0080048684.01.T01:intron 35.0%
AGATAAGTTTAAGAGGAAGG+GGG - contig39end:25239-25258 None:intergenic 35.0%
AGCTGAATTCATTTCCATTC+AGG - contig39end:29175-29194 None:intergenic 35.0%
AGGGTGATATAACTAATGCT+CGG + contig39end:26440-26459 MsG0080048684.01.T01:CDS 35.0%
AGTAAGTGAGGAATAAACCA+TGG + contig39end:24479-24498 MsG0080048684.01.T01:exon 35.0%
AGTCTAACTATTAACAGACC+TGG + contig39end:25620-25639 MsG0080048684.01.T01:intron 35.0%
AGTTTGCAGATTGTGTTAGT+GGG + contig39end:29354-29373 MsG0080048684.01.T01:intron 35.0%
ATGAAACTCTACGCAAATCA+AGG - contig39end:27759-27778 None:intergenic 35.0%
ATTGAAGAAGCCATGAACTT+AGG - contig39end:24205-24224 MsG0080048683.01.T01:CDS 35.0%
CAAATAACACTACGAATCAG+TGG - contig39end:29618-29637 None:intergenic 35.0%
CAAATACCTGACAGTATAGA+AGG - contig39end:27923-27942 None:intergenic 35.0%
CAATGTTACTCATGTACTGA+AGG + contig39end:27851-27870 MsG0080048684.01.T01:CDS 35.0%
CATAGACAACCTATCAATGA+AGG - contig39end:25168-25187 None:intergenic 35.0%
CTCAAATCGTGTTTCGAAAT+GGG - contig39end:26531-26550 None:intergenic 35.0%
GCATATGTCTATTAAAGGTG+AGG - contig39end:27645-27664 None:intergenic 35.0%
GCATTAATTACTCCACATCA+AGG - contig39end:29329-29348 None:intergenic 35.0%
GCCATTAAGATTTCAGGAAT+TGG + contig39end:27955-27974 MsG0080048684.01.T01:intron 35.0%
GCTAATTACTTACTTCTTGC+AGG + contig39end:27822-27841 MsG0080048684.01.T01:CDS 35.0%
GCTGAATTCATTTCCATTCA+GGG - contig39end:29174-29193 None:intergenic 35.0%
GTAAGTGAGGAATAAACCAT+GGG + contig39end:24480-24499 MsG0080048684.01.T01:exon 35.0%
GTATTATCCGGATATCAAGA+TGG - contig39end:25837-25856 None:intergenic 35.0%
GTTTGGGTGATGATTATCTA+AGG - contig39end:29764-29783 None:intergenic 35.0%
TCAAATCGTGTTTCGAAATG+GGG - contig39end:26530-26549 None:intergenic 35.0%
TCTCATGATGAATGAACTTG+AGG - contig39end:26618-26637 None:intergenic 35.0%
TCTGGTTATCCTTCATTGAT+AGG + contig39end:25156-25175 MsG0080048684.01.T01:intron 35.0%
TGACATGGAGCAACAAAAAA+GGG - contig39end:27350-27369 None:intergenic 35.0%
TGCCATGTATAAACAATAGG+GGG + contig39end:25772-25791 MsG0080048684.01.T01:intron 35.0%
TGCGAAGATATTTAGAGGAA+AGG + contig39end:27890-27909 MsG0080048684.01.T01:CDS 35.0%
TGGAAAACTTACTTTGCATC+AGG - contig39end:25918-25937 None:intergenic 35.0%
TTCAAAGTTAGAAGTCGTAG+TGG - contig39end:28162-28181 None:intergenic 35.0%
TTGACATGGAGCAACAAAAA+AGG - contig39end:27351-27370 None:intergenic 35.0%
TTGGCTAGACTTTATAATGC+AGG - contig39end:26964-26983 None:intergenic 35.0%
TTTGACGAGGTGGTTTAAAA+TGG + contig39end:28913-28932 MsG0080048684.01.T01:intron 35.0%
! AAAACCTTTTTCCACTAGGT+CGG - contig39end:26768-26787 None:intergenic 35.0%
! ACTTGTAGCATGCTTTTGTT+TGG + contig39end:28366-28385 MsG0080048684.01.T01:intron 35.0%
! CAAATTGCTATTAGCCTGTA+TGG - contig39end:29919-29938 None:intergenic 35.0%
! CAGGTCATTAGACATTTTGA+TGG + contig39end:27155-27174 MsG0080048684.01.T01:intron 35.0%
! CCGATGGATAATGTTGATAA+TGG + contig39end:29796-29815 MsG0080048684.01.T01:three_prime_UTR 35.0%
! GAAGGATCATATAGGTTTTG+AGG + contig39end:27073-27092 MsG0080048684.01.T01:intron 35.0%
! GATGCAAAGTAAGTTTTCCA+TGG + contig39end:25918-25937 MsG0080048684.01.T01:intron 35.0%
! TCTAGTACAACTGGATTTTC+AGG - contig39end:25579-25598 None:intergenic 35.0%
! TCTTTTGGATTGAATCCTTC+TGG - contig39end:29025-29044 None:intergenic 35.0%
! TGAGAAGAAGTACAAGAGAA+TGG - contig39end:24988-25007 None:intergenic 35.0%
! TGTTTTCTCTTGTTCTGTTC+AGG + contig39end:27136-27155 MsG0080048684.01.T01:intron 35.0%
! TTATGAATCTTTTGACGAGG+TGG + contig39end:28903-28922 MsG0080048684.01.T01:intron 35.0%
! TTTGGGACAACAAAAAGACT+CGG - contig39end:29726-29745 None:intergenic 35.0%
!! AACACAAAGGAGTACTATAC+AGG - contig39end:25272-25291 None:intergenic 35.0%
!! AACCTTCTTCTTTCGCTTTT+CGG - contig39end:24625-24644 None:intergenic 35.0%
!! CACTGATTCGTAGTGTTATT+TGG + contig39end:29616-29635 MsG0080048684.01.T01:three_prime_UTR 35.0%
!! CTGGAATTACGACTACTTTT+TGG - contig39end:28604-28623 None:intergenic 35.0%
!! GCTAAAATTGTTTTTCCCTG+TGG + contig39end:28564-28583 MsG0080048684.01.T01:intron 35.0%
!! TAATTTTCATGGCCTTGATG+TGG + contig39end:29314-29333 MsG0080048684.01.T01:intron 35.0%
!! TAGACATTTTGATGGTTGCA+AGG + contig39end:27163-27182 MsG0080048684.01.T01:CDS 35.0%
!! TATATCCCATTTCTAGCTTG+CGG + contig39end:29401-29420 MsG0080048684.01.T01:CDS 35.0%
!! TCCGAATTTTGGTAAAACTC+TGG - contig39end:28205-28224 None:intergenic 35.0%
!! TGTTAGCTAAATTGGTTTGC+AGG + contig39end:24589-24608 MsG0080048684.01.T01:intron 35.0%
!!! GATTTGGTTTTCATCCGTAA+TGG - contig39end:25700-25719 None:intergenic 35.0%
!!! GCTTCATTTTTTGCAGTTAC+CGG + contig39end:27433-27452 MsG0080048684.01.T01:intron 35.0%
!!! TATTTTTTGCGATCGCCAAA+AGG - contig39end:27602-27621 None:intergenic 35.0%
AAAGACTCGGAAGAAAGGAA+AGG - contig39end:29713-29732 None:intergenic 40.0%
AACCAAAACGACATCACCAA+AGG - contig39end:27041-27060 None:intergenic 40.0%
ACCTGGATAACACCTTCAAT+CGG - contig39end:26418-26437 None:intergenic 40.0%
AGAACTTGAAAATCTCTCCC+TGG + contig39end:29574-29593 MsG0080048684.01.T01:CDS 40.0%
AGATAAGGTAGTAGACTGAC+TGG - contig39end:27677-27696 None:intergenic 40.0%
AGTAGTCGTAATTCCAGCAT+AGG + contig39end:28607-28626 MsG0080048684.01.T01:CDS 40.0%
ATAAATGAAAACTTGGGGGC+TGG - contig39end:25498-25517 None:intergenic 40.0%
ATATGCAAGATCAGGAATCC+AGG - contig39end:29595-29614 None:intergenic 40.0%
ATCAGTGGATATGCAAGATC+AGG - contig39end:29603-29622 None:intergenic 40.0%
ATGTGGTTGAAATTCGACAG+AGG - contig39end:26804-26823 None:intergenic 40.0%
CAAAGCTTCAAGGGATAAGA+GGG + contig39end:24503-24522 MsG0080048684.01.T01:CDS 40.0%
CAAATCGTGTTTCGAAATGG+GGG - contig39end:26529-26548 None:intergenic 40.0%
CAATCCCCTCATTGACATTA+CGG - contig39end:25081-25100 None:intergenic 40.0%
CACCTCACATAACACATATC+AGG - contig39end:26126-26145 None:intergenic 40.0%
CAGACATTTACTCAAACACC+TGG - contig39end:24390-24409 None:intergenic 40.0%
CTCACTAATGCAAATGAAGG+AGG + contig39end:25544-25563 MsG0080048684.01.T01:intron 40.0%
CTCCTTCATTTGCATTAGTG+AGG - contig39end:25546-25565 None:intergenic 40.0%
GAAAAGCGAAAGAAGAAGGT+TGG + contig39end:24624-24643 MsG0080048684.01.T01:CDS 40.0%
GAAACCGTAATGTCAATGAG+GGG + contig39end:25074-25093 MsG0080048684.01.T01:intron 40.0%
GAGTTTGCAGATTGTGTTAG+TGG + contig39end:29353-29372 MsG0080048684.01.T01:intron 40.0%
GATGTGAGATCTCAATGTCA+TGG - contig39end:25966-25985 None:intergenic 40.0%
GCCATGTATAAACAATAGGG+GGG + contig39end:25773-25792 MsG0080048684.01.T01:intron 40.0%
GCTTACTGCAAGTATGAGTT+GGG - contig39end:27488-27507 None:intergenic 40.0%
GGAACTTGGAAGGATCATAT+AGG + contig39end:27065-27084 MsG0080048684.01.T01:intron 40.0%
GTTACTCATGTACTGAAGGA+AGG + contig39end:27855-27874 MsG0080048684.01.T01:CDS 40.0%
GTTGCTCCAAATTGATCCTT+TGG + contig39end:27022-27041 MsG0080048684.01.T01:intron 40.0%
GTTTCTTAGGCAAGTAAGTG+AGG + contig39end:24467-24486 MsG0080048684.01.T01:intron 40.0%
TAAATGAAAACTTGGGGGCT+GGG - contig39end:25497-25516 None:intergenic 40.0%
TACCGAAAAGCGAAAGAAGA+AGG + contig39end:24620-24639 MsG0080048684.01.T01:CDS 40.0%
TATGCAAGATCAGGAATCCA+GGG - contig39end:29594-29613 None:intergenic 40.0%
TCCCCCCTATTGTTTATACA+TGG - contig39end:25777-25796 None:intergenic 40.0%
TCCCTGATATGTGTTATGTG+AGG + contig39end:26121-26140 MsG0080048684.01.T01:intron 40.0%
TCCTGAAATCTTAATGGCGA+GGG - contig39end:27953-27972 None:intergenic 40.0%
TGCCTCACTAATGCAAATGA+AGG + contig39end:25541-25560 MsG0080048684.01.T01:intron 40.0%
TGCTTACTGCAAGTATGAGT+TGG - contig39end:27489-27508 None:intergenic 40.0%
TTAAACTATACACCACGCAC+TGG - contig39end:27721-27740 None:intergenic 40.0%
TTACCCTCAACCTCTTTCAT+CGG + contig39end:27304-27323 MsG0080048684.01.T01:intron 40.0%
TTCAAAGTTGCATCCCTGAA+TGG + contig39end:29158-29177 MsG0080048684.01.T01:intron 40.0%
TTCATCCATGTCATGAAGTC+CGG - contig39end:27455-27474 None:intergenic 40.0%
TTCCTGAAATCTTAATGGCG+AGG - contig39end:27954-27973 None:intergenic 40.0%
TTGCTGCATCATGATATGCA+GGG + contig39end:26345-26364 MsG0080048684.01.T01:intron 40.0%
TTGGATTGAATCCTTCTGGA+GGG - contig39end:29021-29040 None:intergenic 40.0%
TTTGGATTGAATCCTTCTGG+AGG - contig39end:29022-29041 None:intergenic 40.0%
! AAACCTTTTTCCACTAGGTC+GGG - contig39end:26767-26786 None:intergenic 40.0%
! AAAGCGCCATAGTTTGTGTT+TGG - contig39end:25034-25053 None:intergenic 40.0%
! AAGGATCAATTTGGAGCAAC+AGG - contig39end:27022-27041 None:intergenic 40.0%
! ACAGAGTGTTTGGAATGTGA+AGG - contig39end:26280-26299 None:intergenic 40.0%
! ACGAGGTGGTTTAAAATGGT+AGG + contig39end:28917-28936 MsG0080048684.01.T01:intron 40.0%
! AGAAGCCGATGAAGATCTTT+TGG - contig39end:29040-29059 None:intergenic 40.0%
! GGTGGTTTAAAATGGTAGGA+AGG + contig39end:28921-28940 MsG0080048684.01.T01:intron 40.0%
! GGTTTAAAATGGTAGGAAGG+CGG + contig39end:28924-28943 MsG0080048684.01.T01:intron 40.0%
! GTTTAAAATGGTAGGAAGGC+GGG + contig39end:28925-28944 MsG0080048684.01.T01:intron 40.0%
!! AACTCTAGAGCTCTCTTGTA+AGG - contig39end:29527-29546 None:intergenic 40.0%
!! ACTCTAGAGCTCTCTTGTAA+GGG - contig39end:29526-29545 None:intergenic 40.0%
!! AGCTATTGATTTGCAGCCAA+TGG + contig39end:26390-26409 MsG0080048684.01.T01:CDS 40.0%
!! ATATCCCATTTCTAGCTTGC+GGG + contig39end:29402-29421 MsG0080048684.01.T01:CDS 40.0%
!! CAAGTGGTTTCTAGTACAAC+TGG - contig39end:25588-25607 None:intergenic 40.0%
!! GTAGCATGCTTTTGTTTGGT+TGG + contig39end:28370-28389 MsG0080048684.01.T01:intron 40.0%
!! TTGGTTTGTTGGAACTTGGA+AGG + contig39end:27055-27074 MsG0080048684.01.T01:intron 40.0%
!!! ATCCTTTGGTGATGTCGTTT+TGG + contig39end:27036-27055 MsG0080048684.01.T01:intron 40.0%
!!! CGTTTTGGTTTGTTGGAACT+TGG + contig39end:27051-27070 MsG0080048684.01.T01:intron 40.0%
!!! GGGAGAGATTTTCAAGTTCT+CGG - contig39end:29574-29593 None:intergenic 40.0%
!!! GTGATGTCGTTTTGGTTTGT+TGG + contig39end:27044-27063 MsG0080048684.01.T01:intron 40.0%
AAACCATGGGCAAAGCTTCA+AGG + contig39end:24493-24512 MsG0080048684.01.T01:exon 45.0%
AAACTGCAAATGCCTCTGCA+AGG - contig39end:28985-29004 None:intergenic 45.0%
AAATGAAAACTTGGGGGCTG+GGG - contig39end:25496-25515 None:intergenic 45.0%
AACCATGGGCAAAGCTTCAA+GGG + contig39end:24494-24513 MsG0080048684.01.T01:exon 45.0%
AACTGCAAATGCCTCTGCAA+GGG - contig39end:28984-29003 None:intergenic 45.0%
ACTCATGTACTGAAGGAAGG+AGG + contig39end:27858-27877 MsG0080048684.01.T01:CDS 45.0%
AGAAGGTTGGAAGTCCATCA+GGG + contig39end:29062-29081 MsG0080048684.01.T01:CDS 45.0%
AGAATCTCGTACAGTGTACG+AGG - contig39end:24230-24249 MsG0080048683.01.T01:CDS 45.0%
AGTTACCGGACTTCATGACA+TGG + contig39end:27447-27466 MsG0080048684.01.T01:intron 45.0%
ATCCACTGCCTAAAGTTGCT+GGG + contig39end:29456-29475 MsG0080048684.01.T01:CDS 45.0%
ATGGGTCGTATACTATGACC+AGG - contig39end:25641-25660 None:intergenic 45.0%
CACAAGCCTTCTATACTGTC+AGG + contig39end:27914-27933 MsG0080048684.01.T01:CDS 45.0%
CCTATGTTGATATGCACTCC+AGG + contig39end:24369-24388 MsG0080048684.01.T01:intron 45.0%
CCTGAAATCTTAATGGCGAG+GGG - contig39end:27952-27971 None:intergenic 45.0%
CCTGGAGTGCATATCAACAT+AGG - contig39end:24372-24391 None:intergenic 45.0%
CGTAATGTCAATGAGGGGAT+TGG + contig39end:25079-25098 MsG0080048684.01.T01:intron 45.0%
CTCATGTACTGAAGGAAGGA+GGG + contig39end:27859-27878 MsG0080048684.01.T01:CDS 45.0%
CTGCATATCATGATGCAGCA+AGG - contig39end:26346-26365 None:intergenic 45.0%
CTTCAAGGGATAAGAGGGTA+TGG + contig39end:24508-24527 MsG0080048684.01.T01:intron 45.0%
CTTGCTGCATCATGATATGC+AGG + contig39end:26344-26363 MsG0080048684.01.T01:intron 45.0%
GAAAATTACTCCCCTCCAGA+AGG + contig39end:29007-29026 MsG0080048684.01.T01:CDS 45.0%
GAAGAAGCCATGAACTTAGG+AGG - contig39end:24202-24221 MsG0080048683.01.T01:CDS 45.0%
GCAAAGCTTCAAGGGATAAG+AGG + contig39end:24502-24521 MsG0080048684.01.T01:CDS 45.0%
GCTTTGCAAAAGTCACCACA+GGG - contig39end:28582-28601 None:intergenic 45.0%
GGGGAACTAACATTCTGTAC+TGG - contig39end:25470-25489 None:intergenic 45.0%
GTTGCAGCCATCTTGATATC+CGG + contig39end:25827-25846 MsG0080048684.01.T01:intron 45.0%
TAGTTATATCACCCTGCACC+TGG - contig39end:26435-26454 None:intergenic 45.0%
TATCCACTGCCTAAAGTTGC+TGG + contig39end:29455-29474 MsG0080048684.01.T01:CDS 45.0%
TATGTTCCCCCAGCAACTTT+AGG - contig39end:29467-29486 None:intergenic 45.0%
TTAGTTGTTCACCCTTGCAG+AGG + contig39end:28970-28989 MsG0080048684.01.T01:intron 45.0%
TTGCAGATTGTGTTAGTGGG+TGG + contig39end:29357-29376 MsG0080048684.01.T01:intron 45.0%
! AACCTTTTTCCACTAGGTCG+GGG - contig39end:26766-26785 None:intergenic 45.0%
! AGATTGTGTTAGTGGGTGGT+TGG + contig39end:29361-29380 MsG0080048684.01.T01:intron 45.0%
! GTAGATTTATGTGCTGCTCC+AGG + contig39end:24925-24944 MsG0080048684.01.T01:CDS 45.0%
! TCTAGAGCTCTCTTGTAAGG+GGG - contig39end:29524-29543 None:intergenic 45.0%
! TGGATTGAATCCTTCTGGAG+GGG - contig39end:29020-29039 None:intergenic 45.0%
!! CTCTAGAGCTCTCTTGTAAG+GGG - contig39end:29525-29544 None:intergenic 45.0%
!! TATCCCATTTCTAGCTTGCG+GGG + contig39end:29403-29422 MsG0080048684.01.T01:CDS 45.0%
!! TCCGATTGAAGGTGTTATCC+AGG + contig39end:26414-26433 MsG0080048684.01.T01:CDS 45.0%
!! TCTTCATCGGCTTCTTGAGA+AGG + contig39end:29045-29064 MsG0080048684.01.T01:CDS 45.0%
AATGAAAACTTGGGGGCTGG+GGG - contig39end:25495-25514 None:intergenic 50.0%
ACACCTTCAATCGGAGCCAT+TGG - contig39end:26409-26428 None:intergenic 50.0%
ACCATCGCACACAACAAGGT+CGG - contig39end:27189-27208 None:intergenic 50.0%
ACTCCTACAGGTGCACTTGT+TGG - contig39end:28315-28334 None:intergenic 50.0%
ATCCCTTGAAGCTTTGCCCA+TGG - contig39end:24499-24518 None:intergenic 50.0%
CCATCAGGGGTAGATGATAC+AGG + contig39end:29076-29095 MsG0080048684.01.T01:CDS 50.0%
CCCCTCGCCATTAAGATTTC+AGG + contig39end:27949-27968 MsG0080048684.01.T01:intron 50.0%
CCTGTATCATCTACCCCTGA+TGG - contig39end:29079-29098 None:intergenic 50.0%
CTAGAGCTCTCTTGTAAGGG+GGG - contig39end:29523-29542 None:intergenic 50.0%
CTTTGCATCAGGTGCAAGCT+TGG - contig39end:25907-25926 None:intergenic 50.0%
GAAGGTTGGAAGTCCATCAG+GGG + contig39end:29063-29082 MsG0080048684.01.T01:CDS 50.0%
GAGAAGGTTGGAAGTCCATC+AGG + contig39end:29061-29080 MsG0080048684.01.T01:CDS 50.0%
GGCTTTGCAAAAGTCACCAC+AGG - contig39end:28583-28602 None:intergenic 50.0%
GGTCCGATGAAAGAGGTTGA+GGG - contig39end:27310-27329 None:intergenic 50.0%
GTGGTTGGAAGGCCCTAATA+AGG + contig39end:29376-29395 MsG0080048684.01.T01:CDS 50.0%
TAATGCTCGGACTGCTGAAG+TGG + contig39end:26453-26472 MsG0080048684.01.T01:CDS 50.0%
TAGAGCTCTCTTGTAAGGGG+GGG - contig39end:29522-29541 None:intergenic 50.0%
TCCACTGCCTAAAGTTGCTG+GGG + contig39end:29457-29476 MsG0080048684.01.T01:CDS 50.0%
TCTCGTTGGTCCGATGAAAG+AGG - contig39end:27317-27336 None:intergenic 50.0%
TGGGGGAACATATCAGAGCT+TGG + contig39end:29475-29494 MsG0080048684.01.T01:CDS 50.0%
TGGTCCGATGAAAGAGGTTG+AGG - contig39end:27311-27330 None:intergenic 50.0%
! GCAAGTGTTTGGAGGCACAA+GGG - contig39end:28847-28866 None:intergenic 50.0%
! TGCAAGTGTTTGGAGGCACA+AGG - contig39end:28848-28867 None:intergenic 50.0%
! TGTGTTAGTGGGTGGTTGGA+AGG + contig39end:29365-29384 MsG0080048684.01.T01:CDS 50.0%
!! CATCGGCTTCTTGAGAAGGT+TGG + contig39end:29049-29068 MsG0080048684.01.T01:CDS 50.0%
!! GAAGGTGTTATCCAGGTGCA+GGG + contig39end:26421-26440 MsG0080048684.01.T01:CDS 50.0%
!! TGAAGGTGTTATCCAGGTGC+AGG + contig39end:26420-26439 MsG0080048684.01.T01:CDS 50.0%
AGGTCCCCGCAAGCTAGAAA+TGG - contig39end:29410-29429 None:intergenic 55.0%
ATGTATCCACCCCGACCTAG+TGG + contig39end:26754-26773 MsG0080048684.01.T01:intron 55.0%
CACCCCGACCTAGTGGAAAA+AGG + contig39end:26761-26780 MsG0080048684.01.T01:intron 55.0%
CAGCCAATGGCTCCGATTGA+AGG + contig39end:26403-26422 MsG0080048684.01.T01:CDS 55.0%
CCACTGCCTAAAGTTGCTGG+GGG + contig39end:29458-29477 MsG0080048684.01.T01:CDS 55.0%
CTCTTGTAAGGGGGGGCAAT+AGG - contig39end:29515-29534 None:intergenic 55.0%
GAGCACCATCGCACACAACA+AGG - contig39end:27193-27212 None:intergenic 55.0%
GCACCAACAAGTGCACCTGT+AGG + contig39end:28309-28328 MsG0080048684.01.T01:intron 55.0%
GGGGCAATAGGAGGTTGTAC+TGG - contig39end:29503-29522 None:intergenic 55.0%
GGTCCCCGCAAGCTAGAAAT+GGG - contig39end:29409-29428 None:intergenic 55.0%
TTGTAAGGGGGGGCAATAGG+AGG - contig39end:29512-29531 None:intergenic 55.0%
! CTTTTTCCACTAGGTCGGGG+TGG - contig39end:26763-26782 None:intergenic 55.0%
AAAACTTGGGGGCTGGGGGT+AGG - contig39end:25491-25510 None:intergenic 60.0%
AAACTTGGGGGCTGGGGGTA+GGG - contig39end:25490-25509 None:intergenic 60.0%
AATGCGCACACACCAGTGCG+TGG + contig39end:27706-27725 MsG0080048684.01.T01:intron 60.0%
AGGCAGCTGGAGTCAGGTAC+TGG + contig39end:24945-24964 MsG0080048684.01.T01:intron 60.0%
AGTACCTGACTCCAGCTGCC+TGG - contig39end:24946-24965 None:intergenic 60.0%
CAGGTGCAAGCTTGGCTGGA+AGG - contig39end:25899-25918 None:intergenic 60.0%
CCCCCAGCAACTTTAGGCAG+TGG - contig39end:29461-29480 None:intergenic 60.0%
GCATCAGGTGCAAGCTTGGC+TGG - contig39end:25903-25922 None:intergenic 60.0%
GTGTGCGATGGTGCTCCTGA+TGG + contig39end:27197-27216 MsG0080048684.01.T01:CDS 60.0%
! CTAGCTTGCGGGGACCTTAC+TGG + contig39end:29413-29432 MsG0080048684.01.T01:CDS 60.0%
! GCCGACCTTGTTGTGTGCGA+TGG + contig39end:27185-27204 MsG0080048684.01.T01:CDS 60.0%
! TATGTGCTGCTCCAGGCAGC+TGG + contig39end:24932-24951 MsG0080048684.01.T01:CDS 60.0%
AACTTGGGGGCTGGGGGTAG+GGG - contig39end:25489-25508 None:intergenic 65.0%
TGCTCCAGGCAGCTGGAGTC+AGG + contig39end:24939-24958 MsG0080048684.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
contig39end gene 24196 29948 24196 ID=MsG0080048684.01;Name=MsG0080048684.01
contig39end mRNA 24196 29948 24196 ID=MsG0080048684.01.T01;Parent=MsG0080048684.01;Name=MsG0080048684.01.T01;_AED=0.50;_eAED=0.50;_QI=180|0.90|0.91|1|0.90|0.83|12|344|325
contig39end exon 29363 29948 29363 ID=MsG0080048684.01.T01:exon:1643;Parent=MsG0080048684.01.T01
contig39end exon 28990 29097 28990 ID=MsG0080048684.01.T01:exon:1642;Parent=MsG0080048684.01.T01
contig39end exon 28565 28628 28565 ID=MsG0080048684.01.T01:exon:1641;Parent=MsG0080048684.01.T01
contig39end exon 27816 27935 27816 ID=MsG0080048684.01.T01:exon:1640;Parent=MsG0080048684.01.T01
contig39end exon 27449 27501 27449 ID=MsG0080048684.01.T01:exon:1639;Parent=MsG0080048684.01.T01
contig39end exon 27158 27218 27158 ID=MsG0080048684.01.T01:exon:1638;Parent=MsG0080048684.01.T01
contig39end exon 26366 26474 26366 ID=MsG0080048684.01.T01:exon:1637;Parent=MsG0080048684.01.T01
contig39end exon 25876 25925 25876 ID=MsG0080048684.01.T01:exon:1636;Parent=MsG0080048684.01.T01
contig39end exon 24911 24960 24911 ID=MsG0080048684.01.T01:exon:1635;Parent=MsG0080048684.01.T01
contig39end exon 24611 24704 24611 ID=MsG0080048684.01.T01:exon:1634;Parent=MsG0080048684.01.T01
contig39end exon 24476 24524 24476 ID=MsG0080048684.01.T01:exon:1633;Parent=MsG0080048684.01.T01
contig39end exon 24196 24353 24196 ID=MsG0080048684.01.T01:exon:1632;Parent=MsG0080048684.01.T01
contig39end five_prime_UTR 24196 24353 24196 ID=MsG0080048684.01.T01:five_prime_utr;Parent=MsG0080048684.01.T01
contig39end five_prime_UTR 24476 24497 24476 ID=MsG0080048684.01.T01:five_prime_utr;Parent=MsG0080048684.01.T01
contig39end CDS 24498 24524 24498 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 24611 24704 24611 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 24911 24960 24911 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 25876 25925 25876 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 26366 26474 26366 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 27158 27218 27158 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 27449 27501 27449 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 27816 27935 27816 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 28565 28628 28565 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 28990 29097 28990 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end CDS 29363 29604 29363 ID=MsG0080048684.01.T01:cds;Parent=MsG0080048684.01.T01
contig39end three_prime_UTR 29605 29948 29605 ID=MsG0080048684.01.T01:three_prime_utr;Parent=MsG0080048684.01.T01
Gene Sequence

>MsG0080048684.01.T01

ATGGGCAAAGCTTCAAGGGATAAGAGGGATATATATTACCGAAAAGCGAAAGAAGAAGGTTGGCGTGCTCGAAGTGCTTTTAAACTTCTTCAGATAGATGAAGAATTTAACATTTTTGAAGGGGTGAAACGTGTTGTAGATTTATGTGCTGCTCCAGGCAGCTGGAGTCAGGTTTTGAGTCGTAAACTGTACCTTCCAGCCAAGCTTGCACCTGATGCAAAGGATGAAAAGCTTCCTCTTATTGTAGCTATTGATTTGCAGCCAATGGCTCCGATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGGACTGCTGAAGTGGTCATTAGACATTTTGATGGTTGCAAGGCCGACCTTGTTGTGTGCGATGGTGCTCCTGATGTTACCGGACTTCATGACATGGATGAATTTGTTCAATCCCAACTCATACTTGCAATTGATGCTAATTACTTACTTCTTGCAGGGGTTAACAATGTTACTCATGTACTGAAGGAAGGAGGGAAGTTCATTGCGAAGATATTTAGAGGAAAGGACACAAGCCTTCTATACTGTCAGCTAAAATTGTTTTTCCCTGTGGTGACTTTTGCAAAGCCAAAAAGTAGTCGTAATTCCAGCATAGAGGCATTTGCAGTTTGTGAAAATTACTCCCCTCCAGAAGGATTCAATCCAAAAGATCTTCATCGGCTTCTTGAGAAGGTTGGAAGTCCATCAGGGGTAGATGATACAGATTGTGTTAGTGGGTGGTTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGCGGGGACCTTACTGGATATGATTCTGATAGGTCATATCCACTGCCTAAAGTTGCTGGGGGAACATATCAGAGCTTGGATCCAGTACAACCTCCTATTGCCCCCCCTTACAAGAGAGCTCTAGAGTTAAAAAAAGCATCAACTCAAGGATTCCGAGAACTTGAAAATCTCTCCCTGGATTCCTGA
Protein sequence

>MsG0080048684.01.T01

MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLAPDAKDEKLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAIDANYLLLAGVNNVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCVSGWLEGPNKVYIPFLACGDLTGYDSDRSYPLPKVAGGTYQSLDPVQPPIAPPYKRALELKKASTQGFRELENLSLDS*