AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006715.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006715.01.T01 MTR_2g013490 93.354 316 5 2 1 300 1 316 0.0 591
MsG0280006715.01.T01 MTR_4g078640 33.005 203 113 6 1 196 1 187 2.16e-27 112
MsG0280006715.01.T01 MTR_4g070380 33.333 189 106 5 12 196 15 187 1.35e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006715.01.T01 AT5G01230 86.971 307 23 3 1 290 1 307 0.0 537
MsG0280006715.01.T01 AT5G01230 100.000 57 0 0 1 57 1 57 4.39e-35 121
MsG0280006715.01.T01 AT4G25730 34.483 203 108 7 1 196 1 185 6.11e-29 117

Find 111 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCAGTGATAATATTTA+TGG 0.099808 2:-5293460 MsG0280006715.01.T01:three_prime_UTR
AATGGGATATACACCTTATT+AGG 0.161234 2:+5293722 None:intergenic
CCACTGATTCGTAGTGTATT+TGG 0.178810 2:-5293496 MsG0280006715.01.T01:three_prime_UTR
CATCGAAAAGATTATAAGTT+TGG 0.217563 2:+5293334 None:intergenic
AGGAATAATTTGTATTCATT+TGG 0.244032 2:+5293371 None:intergenic
TTTGTTGGATAGTTTGATTC+AGG 0.249399 2:-5298775 MsG0280006715.01.T01:five_prime_UTR
AGAAGCCGATGAAGATCTTT+TGG 0.261957 2:+5294074 None:intergenic
CTAGCTTGCGGGGACCTTAC+TGG 0.280561 2:-5293698 MsG0280006715.01.T01:CDS
TTCATTGCGAAGATATTTAG+AGG 0.318467 2:-5295226 MsG0280006715.01.T01:CDS
ATATCCCATTTCTAGCTTGC+GGG 0.337528 2:-5293709 MsG0280006715.01.T01:CDS
GGAATAATTTGTATTCATTT+GGG 0.341056 2:+5293372 None:intergenic
CAAATTGCTATTAGCCTGTA+TGG 0.362181 2:+5293200 None:intergenic
AACTCTAGAGCTCTCTTGTA+AGG 0.363418 2:+5293587 None:intergenic
TGCTCCAGGCAGCTGGAGTC+AGG 0.367296 2:-5298161 MsG0280006715.01.T01:intron
TGTGATTCTGTGAAATTTGT+TGG 0.370019 2:-5298790 MsG0280006715.01.T01:five_prime_UTR
GCATCAGGTGCAAGCTTGGC+TGG 0.374216 2:+5297201 None:intergenic
ATCGAAAAGATTATAAGTTT+GGG 0.378269 2:+5293335 None:intergenic
GTTTGGGTGATGATTATCTA+AGG 0.378559 2:+5293351 None:intergenic
GCAAAGCTTCAAGGGATAAG+AGG 0.379131 2:-5298596 MsG0280006715.01.T01:CDS
CTTTGCATCAGGTGCAAGCT+TGG 0.398733 2:+5297197 None:intergenic
TATCCACTGCCTAAAGTTGC+TGG 0.400318 2:-5293656 MsG0280006715.01.T01:CDS
CAAATACCTGACAGTATAGA+AGG 0.404894 2:+5295191 None:intergenic
AGGTCCCCGCAAGCTAGAAA+TGG 0.414251 2:+5293704 None:intergenic
GAGAAGGTTGGAAGTCCATC+AGG 0.420443 2:-5294050 MsG0280006715.01.T01:CDS
CAGCCAATGGCTCCGATTGA+AGG 0.431915 2:-5296703 MsG0280006715.01.T01:CDS
ATGGGATATACACCTTATTA+GGG 0.432233 2:+5293723 None:intergenic
ATAGTTTGATTCAGGAGAAA+AGG 0.443837 2:-5298767 MsG0280006715.01.T01:intron
TGGAAAACTTACTTTGCATC+AGG 0.444078 2:+5297186 None:intergenic
AAATCAATAGCTACAATAAG+AGG 0.445424 2:+5296727 None:intergenic
TATGTGCTGCTCCAGGCAGC+TGG 0.452462 2:-5298168 MsG0280006715.01.T01:CDS
TGCTTACTGCAAGTATGAGT+TGG 0.458021 2:+5295625 None:intergenic
AAACCATGGGCAAAGCTTCA+AGG 0.459913 2:-5298605 MsG0280006715.01.T01:exon
GAGTTTGCAGATTGTGTTAG+TGG 0.463559 2:-5293758 MsG0280006715.01.T01:intron
CATCGGCTTCTTGAGAAGGT+TGG 0.470461 2:-5294062 MsG0280006715.01.T01:CDS
CAACAAAAGACTCGGAAGAA+AGG 0.471356 2:+5293396 None:intergenic
TTCATCCATGTCATGAAGTC+CGG 0.472049 2:+5295659 None:intergenic
ATCAGTGGATATGCAAGATC+AGG 0.472705 2:+5293511 None:intergenic
TTACTGGATATGATTCTGAT+AGG 0.474435 2:-5293682 MsG0280006715.01.T01:CDS
ATCCCTTGAAGCTTTGCCCA+TGG 0.475121 2:+5298602 None:intergenic
GCTTACTGCAAGTATGAGTT+GGG 0.475427 2:+5295626 None:intergenic
TGAAGGTGTTATCCAGGTGC+AGG 0.479392 2:-5296686 MsG0280006715.01.T01:CDS
ATCCACTGCCTAAAGTTGCT+GGG 0.488195 2:-5293655 MsG0280006715.01.T01:CDS
CCATCAGGGGTAGATGATAC+AGG 0.496409 2:-5294035 MsG0280006715.01.T01:intron
AGCTATTGATTTGCAGCCAA+TGG 0.497084 2:-5296716 MsG0280006715.01.T01:CDS
TATATCCCATTTCTAGCTTG+CGG 0.497714 2:-5293710 MsG0280006715.01.T01:CDS
TCTTCATCGGCTTCTTGAGA+AGG 0.501095 2:-5294066 MsG0280006715.01.T01:CDS
AGTACCTGACTCCAGCTGCC+TGG 0.508337 2:+5298157 None:intergenic
ACACCTTCAATCGGAGCCAT+TGG 0.510050 2:+5296700 None:intergenic
TTGGATTGAATCCTTCTGGA+GGG 0.511479 2:+5294093 None:intergenic
GGGGCAATAGGAGGTTGTAC+TGG 0.511552 2:+5293611 None:intergenic
GTGGTTGGAAGGCCCTAATA+AGG 0.511729 2:-5293735 MsG0280006715.01.T01:CDS
GGTCCCCGCAAGCTAGAAAT+GGG 0.513086 2:+5293705 None:intergenic
TCCGATTGAAGGTGTTATCC+AGG 0.517786 2:-5296692 MsG0280006715.01.T01:CDS
TAGTTATATCACCCTGCACC+TGG 0.518978 2:+5296674 None:intergenic
CACAAGCCTTCTATACTGTC+AGG 0.519250 2:-5295197 MsG0280006715.01.T01:intron
TATCAGAATCATATCCAGTA+AGG 0.519570 2:+5293684 None:intergenic
ATTGAAGAAGCCATGAACTT+AGG 0.519813 2:+5298898 MsG0280006714.01.T01:CDS
ATATGCAAGATCAGGAATCC+AGG 0.523232 2:+5293519 None:intergenic
CAGGTGCAAGCTTGGCTGGA+AGG 0.527605 2:+5297205 None:intergenic
ACTCTAGAGCTCTCTTGTAA+GGG 0.527637 2:+5293588 None:intergenic
TGCGAAGATATTTAGAGGAA+AGG 0.528045 2:-5295221 MsG0280006715.01.T01:CDS
TCAATCCAAAAGATCTTCAT+CGG 0.528148 2:-5294079 MsG0280006715.01.T01:CDS
GTAGATTTATGTGCTGCTCC+AGG 0.528472 2:-5298175 MsG0280006715.01.T01:CDS
TGTGTTAGTGGGTGGTTGGA+AGG 0.530748 2:-5293746 MsG0280006715.01.T01:CDS
ACCTGGATAACACCTTCAAT+CGG 0.534040 2:+5296691 None:intergenic
TGGATTGAATCCTTCTGGAG+GGG 0.538206 2:+5294094 None:intergenic
TACCGAAAAGCGAAAGAAGA+AGG 0.538413 2:-5298478 MsG0280006715.01.T01:CDS
GCCGACCTTGTTGTGTGCGA+TGG 0.542550 2:-5295925 MsG0280006715.01.T01:CDS
AACCATGGGCAAAGCTTCAA+GGG 0.544253 2:-5298604 MsG0280006715.01.T01:exon
AGTTTGCAGATTGTGTTAGT+GGG 0.550426 2:-5293757 MsG0280006715.01.T01:intron
CCTGTATCATCTACCCCTGA+TGG 0.551247 2:+5294035 None:intergenic
AGATTGTGTTAGTGGGTGGT+TGG 0.553179 2:-5293750 MsG0280006715.01.T01:CDS
AAACTGCAAATGCCTCTGCA+AGG 0.560534 2:+5294129 None:intergenic
AACTGCAAATGCCTCTGCAA+GGG 0.562858 2:+5294130 None:intergenic
TCCACTGCCTAAAGTTGCTG+GGG 0.574703 2:-5293654 MsG0280006715.01.T01:CDS
GAAAATTACTCCCCTCCAGA+AGG 0.574957 2:-5294104 MsG0280006715.01.T01:CDS
TTGCAGATTGTGTTAGTGGG+TGG 0.575776 2:-5293754 MsG0280006715.01.T01:intron
CTCTAGAGCTCTCTTGTAAG+GGG 0.577035 2:+5293589 None:intergenic
GAAAAGCGAAAGAAGAAGGT+TGG 0.578774 2:-5298474 MsG0280006715.01.T01:CDS
CAAAGCTTCAAGGGATAAGA+GGG 0.579751 2:-5298595 MsG0280006715.01.T01:intron
CTCATGTACTGAAGGAAGGA+GGG 0.582274 2:-5295252 MsG0280006715.01.T01:CDS
AGAACTTGAAAATCTCTCCC+TGG 0.583460 2:-5293537 MsG0280006715.01.T01:CDS
GTGTGCGATGGTGCTCCTGA+TGG 0.586485 2:-5295913 MsG0280006715.01.T01:intron
TATCCCATTTCTAGCTTGCG+GGG 0.586932 2:-5293708 MsG0280006715.01.T01:CDS
TAATGCTCGGACTGCTGAAG+TGG 0.587470 2:-5296653 MsG0280006715.01.T01:intron
GTTTCTTAGGCAAGTAAGTG+AGG 0.591445 2:-5298631 MsG0280006715.01.T01:intron
AATTGTTACTCATGTACTGA+AGG 0.593299 2:-5295260 MsG0280006715.01.T01:CDS
GTTACTCATGTACTGAAGGA+AGG 0.596222 2:-5295256 MsG0280006715.01.T01:CDS
TTAGTTGTTCACCCTTGCAG+AGG 0.597195 2:-5294141 MsG0280006715.01.T01:intron
TTTGGATTGAATCCTTCTGG+AGG 0.598385 2:+5294092 None:intergenic
GAAGAAGCCATGAACTTAGG+AGG 0.598700 2:+5298901 MsG0280006714.01.T01:CDS
CTAGAGCTCTCTTGTAAGGG+GGG 0.605069 2:+5293591 None:intergenic
ATTTGGGACAACAAAAGACT+CGG 0.605473 2:+5293388 None:intergenic
AGAAGGTTGGAAGTCCATCA+GGG 0.611108 2:-5294049 MsG0280006715.01.T01:CDS
ACTCATGTACTGAAGGAAGG+AGG 0.615741 2:-5295253 MsG0280006715.01.T01:CDS
ACCATCGCACACAACAAGGT+CGG 0.624891 2:+5295924 None:intergenic
AGTAAGTGAGGAATAAACCA+TGG 0.627845 2:-5298619 MsG0280006715.01.T01:exon
TATGCAAGATCAGGAATCCA+GGG 0.628400 2:+5293520 None:intergenic
GAGCACCATCGCACACAACA+AGG 0.633636 2:+5295920 None:intergenic
TCTAGAGCTCTCTTGTAAGG+GGG 0.635566 2:+5293590 None:intergenic
ATAATATGAGTAAAATTGTG+AGG 0.639750 2:-5293256 MsG0280006715.01.T01:three_prime_UTR
GAAGGTGTTATCCAGGTGCA+GGG 0.645167 2:-5296685 MsG0280006715.01.T01:CDS
AGGGTGATATAACTAATGCT+CGG 0.647655 2:-5296666 MsG0280006715.01.T01:CDS
GTAAGTGAGGAATAAACCAT+GGG 0.651712 2:-5298618 MsG0280006715.01.T01:exon
AAAGACTCGGAAGAAAGGAA+AGG 0.655032 2:+5293401 None:intergenic
CCAAATACACTACGAATCAG+TGG 0.656066 2:+5293496 None:intergenic
TAGAGCTCTCTTGTAAGGGG+GGG 0.669752 2:+5293592 None:intergenic
CCACTGCCTAAAGTTGCTGG+GGG 0.698850 2:-5293653 MsG0280006715.01.T01:CDS
AGAATCTCGTACAGTGTACG+AGG 0.708517 2:+5298873 MsG0280006714.01.T01:CDS
AGTTACCGGACTTCATGACA+TGG 0.714363 2:-5295664 MsG0280006715.01.T01:CDS
GAAGGTTGGAAGTCCATCAG+GGG 0.734678 2:-5294048 MsG0280006715.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATAAATGAAAACTTT+GGG + Chr2:5294498-5294517 None:intergenic 10.0%
!!! TAAATTTTTAAAGTATTATC+CGG + Chr2:5294843-5294862 None:intergenic 10.0%
!!! TTTTATATAAATGAAAACTT+TGG + Chr2:5294499-5294518 None:intergenic 10.0%
!! AAAAAAAATAGTAACAAACA+AGG + Chr2:5297633-5297652 None:intergenic 15.0%
!! AATTACATTTAAATGATACT+AGG + Chr2:5294104-5294123 None:intergenic 15.0%
!! CTAAAATATAATTCACTTTA+AGG - Chr2:5294345-5294364 MsG0280006715.01.T01:intron 15.0%
!! TATTAGATTTGAATCTTTAA+CGG - Chr2:5297854-5297873 MsG0280006715.01.T01:intron 15.0%
!! TTATATAAATGAAAACTTTG+GGG + Chr2:5294497-5294516 None:intergenic 15.0%
!!! CTTAAAGTGAATTATATTTT+AGG + Chr2:5294347-5294366 None:intergenic 15.0%
!!! TACTTTAAAAATTTATATGC+AGG - Chr2:5294848-5294867 MsG0280006715.01.T01:intron 15.0%
!!! TTTTTTTTTGTTGGTTTTTT+GGG - Chr2:5293553-5293572 MsG0280006715.01.T01:CDS 15.0%
!!! TTTTTTTTTTGTTGGTTTTT+TGG - Chr2:5293552-5293571 MsG0280006715.01.T01:CDS 15.0%
!! AGTTATAAAAGCTAACTAAA+AGG + Chr2:5297027-5297046 None:intergenic 20.0%
!! AGTTTCTTTATGAATTGTTA+TGG - Chr2:5297685-5297704 MsG0280006715.01.T01:intron 20.0%
!! ATAATATGAGTAAAATTGTG+AGG - Chr2:5298839-5298858 MsG0280006715.01.T01:five_prime_UTR 20.0%
!! ATAATTAAAATCAGCTTTCA+AGG + Chr2:5293719-5293738 None:intergenic 20.0%
!! ATCGAAAAGATTATAAGTTT+GGG + Chr2:5298763-5298782 None:intergenic 20.0%
!! ATTCTTAAGATAAGTTTAAG+AGG + Chr2:5294242-5294261 None:intergenic 20.0%
!! CTAAATAACTCATAATAAAG+GGG - Chr2:5297452-5297471 MsG0280006715.01.T01:intron 20.0%
!! CTATCTCTAATTATATATTC+AGG + Chr2:5293798-5293817 None:intergenic 20.0%
!! GCTAAATAACTCATAATAAA+GGG - Chr2:5297451-5297470 MsG0280006715.01.T01:intron 20.0%
!! GGAAAAAGAAAAAGAAATTA+AGG + Chr2:5295838-5295857 None:intergenic 20.0%
!! TAAAAAAGATAACACCATTA+CGG - Chr2:5294677-5294696 MsG0280006715.01.T01:intron 20.0%
!! TATATAAATGAAAACTTTGG+GGG + Chr2:5294496-5294515 None:intergenic 20.0%
!! TCAATAAATTCAAAAGAAAC+AGG + Chr2:5295185-5295204 None:intergenic 20.0%
!! TGCTAAATAACTCATAATAA+AGG - Chr2:5297450-5297469 MsG0280006715.01.T01:intron 20.0%
!! TTAATGTATTAGAATTGACA+TGG + Chr2:5296349-5296368 None:intergenic 20.0%
!! TTGGTTGTAGTTTAAAAATT+TGG - Chr2:5296395-5296414 MsG0280006715.01.T01:intron 20.0%
!!! AAAAGGATACTATAGTTTTA+AGG + Chr2:5295022-5295041 None:intergenic 20.0%
!!! AATATAATTCACTTTAAGGA+AGG - Chr2:5294349-5294368 MsG0280006715.01.T01:intron 20.0%
!!! ACTGTTCTTTTTTTTTTTGT+TGG - Chr2:5293544-5293563 MsG0280006715.01.T01:CDS 20.0%
!!! AGGAATAATTTGTATTCATT+TGG + Chr2:5298727-5298746 None:intergenic 20.0%
!!! GAAGAATTTAACATTTTTGA+AGG - Chr2:5293680-5293699 MsG0280006715.01.T01:CDS 20.0%
!!! GACAAAATAATTGACTTTAA+AGG - Chr2:5297233-5297252 MsG0280006715.01.T01:intron 20.0%
!!! GGAATAATTTGTATTCATTT+GGG + Chr2:5298726-5298745 None:intergenic 20.0%
!!! GGTGTATAGTTTAATTTAAA+CGG - Chr2:5296710-5296729 MsG0280006715.01.T01:CDS 20.0%
!!! GTATATGGAATTATGATTTT+TGG + Chr2:5297510-5297529 None:intergenic 20.0%
!!! TCATGTATACTTAATTTTCA+TGG - Chr2:5298287-5298306 MsG0280006715.01.T01:intron 20.0%
!!! TCATTTCTGGAAATAAATTA+TGG - Chr2:5297065-5297084 MsG0280006715.01.T01:intron 20.0%
!!! TGATAGTTGATATTTCATTA+TGG - Chr2:5296557-5296576 MsG0280006715.01.T01:intron 20.0%
!!! TGTAACTATTTATCTCTTTT+AGG - Chr2:5296517-5296536 MsG0280006715.01.T01:intron 20.0%
!!! TTTTTTTTGTTGGTTTTTTG+GGG - Chr2:5293554-5293573 MsG0280006715.01.T01:CDS 20.0%
! AAACAATGTTTAAAAGGATG+AGG + Chr2:5295159-5295178 None:intergenic 25.0%
! AAATCAATAGCTACAATAAG+AGG + Chr2:5295371-5295390 None:intergenic 25.0%
! AACAAGCATATGTCTATTAA+AGG + Chr2:5296633-5296652 None:intergenic 25.0%
! AAGGATAAATTTATTCTCGT+TGG + Chr2:5296316-5296335 None:intergenic 25.0%
! ACAAAAAGCAACTTAGTATA+TGG + Chr2:5297525-5297544 None:intergenic 25.0%
! AGGAAGAAACAATGTTTAAA+AGG + Chr2:5295165-5295184 None:intergenic 25.0%
! AGTGAAATAATGAAAAGACA+TGG - Chr2:5295902-5295921 MsG0280006715.01.T01:intron 25.0%
! ATAATTACGACCAACATAAA+AGG + Chr2:5295039-5295058 None:intergenic 25.0%
! ATACATTAACTCTGATATGT+AGG - Chr2:5296360-5296379 MsG0280006715.01.T01:intron 25.0%
! ATCTAATAATTGCAAGTGTT+TGG + Chr2:5297842-5297861 None:intergenic 25.0%
! ATGATTAACAATCTACATGT+AGG + Chr2:5298194-5298213 None:intergenic 25.0%
! ATTACTATCTCTGCTAAAAA+TGG + Chr2:5293766-5293785 None:intergenic 25.0%
! ATTGCCATGTATAAACAATA+GGG - Chr2:5294764-5294783 MsG0280006715.01.T01:intron 25.0%
! ATTTAGATATGATCATGAGT+AGG + Chr2:5297389-5297408 None:intergenic 25.0%
! CATCGAAAAGATTATAAGTT+TGG + Chr2:5298764-5298783 None:intergenic 25.0%
! CGCATTTATTAGATTAGATA+AGG + Chr2:5296675-5296694 None:intergenic 25.0%
! TAAGATAAGTTTAAGAGGAA+GGG + Chr2:5294237-5294256 None:intergenic 25.0%
! TATAAAAGCTAACTAAAAGG+TGG + Chr2:5297024-5297043 None:intergenic 25.0%
! TATTGCCATGTATAAACAAT+AGG - Chr2:5294763-5294782 MsG0280006715.01.T01:intron 25.0%
! TCTTGCAGTGATAATATTTA+TGG - Chr2:5298635-5298654 MsG0280006715.01.T01:intron 25.0%
! TGAAACTATAAGTAATACAG+TGG + Chr2:5293868-5293887 None:intergenic 25.0%
! TGATTAACAATCTACATGTA+GGG + Chr2:5298193-5298212 None:intergenic 25.0%
! TGATTTGATGTTAGCTAAAT+TGG - Chr2:5293578-5293597 MsG0280006715.01.T01:CDS 25.0%
! TGCTGTATTATCTTATGTTA+AGG - Chr2:5295239-5295258 MsG0280006715.01.T01:CDS 25.0%
! TGTAATTGACATGAATATCT+TGG - Chr2:5294117-5294136 MsG0280006715.01.T01:CDS 25.0%
! TTAAGATAAGTTTAAGAGGA+AGG + Chr2:5294238-5294257 None:intergenic 25.0%
! TTGCTCTTAAGATTTCTATA+AGG + Chr2:5298097-5298116 None:intergenic 25.0%
!! AAACAGCAAATGATTTTTGA+TGG + Chr2:5294654-5294673 None:intergenic 25.0%
!! AACAGCAAATGATTTTTGAT+GGG + Chr2:5294653-5294672 None:intergenic 25.0%
!! ACTATAGTATCCTTTTATGT+TGG - Chr2:5295026-5295045 MsG0280006715.01.T01:intron 25.0%
!! ATTACTTCCATTGTTTTCAA+AGG + Chr2:5297116-5297135 None:intergenic 25.0%
!! ATTTCATTATGGTTACCTTT+TGG - Chr2:5296568-5296587 MsG0280006715.01.T01:intron 25.0%
!! CAAACTTATAATCTTTTCGA+TGG - Chr2:5298762-5298781 MsG0280006715.01.T01:intron 25.0%
!!! AGTTATATTTTAACTCCTAC+AGG + Chr2:5297311-5297330 None:intergenic 25.0%
!!! CAATTATTTTGTCAACCAAT+TGG + Chr2:5297226-5297245 None:intergenic 25.0%
!!! TGTTGTATGTTTTGTTTCTT+AGG - Chr2:5293451-5293470 MsG0280006715.01.T01:three_prime_UTR 25.0%
!!! TGTTTCTGCTCTAAAATTTA+TGG - Chr2:5295694-5295713 MsG0280006715.01.T01:intron 25.0%
!!! TTAAAAAAAGCATCAACTCA+AGG - Chr2:5298529-5298548 MsG0280006715.01.T01:intron 25.0%
AAACAGCTAAATTCAACTAG+TGG + Chr2:5297808-5297827 None:intergenic 30.0%
AACAAAGCATATAATCTCCA+TGG + Chr2:5294932-5294951 None:intergenic 30.0%
AACTACCAATTACTAAGCTA+TGG + Chr2:5297719-5297738 None:intergenic 30.0%
AAGATAAGTTTAAGAGGAAG+GGG + Chr2:5294236-5294255 None:intergenic 30.0%
AAGGATTGAATTAAACCTAG+AGG - Chr2:5294368-5294387 MsG0280006715.01.T01:intron 30.0%
AATAAAGGGGAAAATGGTAA+AGG - Chr2:5297465-5297484 MsG0280006715.01.T01:intron 30.0%
AATAAAGTGACACTCATTTC+TGG - Chr2:5297052-5297071 MsG0280006715.01.T01:intron 30.0%
AATAATGAAAAGACATGGTG+TGG - Chr2:5295907-5295926 MsG0280006715.01.T01:intron 30.0%
AATGGGATATACACCTTATT+AGG + Chr2:5298376-5298395 None:intergenic 30.0%
AATGTCTCAGAAATAGTGAA+AGG - Chr2:5293823-5293842 MsG0280006715.01.T01:intron 30.0%
AATTGTTACTCATGTACTGA+AGG - Chr2:5296835-5296854 MsG0280006715.01.T01:intron 30.0%
ACTCATAATAAAGGGGAAAA+TGG - Chr2:5297459-5297478 MsG0280006715.01.T01:intron 30.0%
AGAACACAAAAAACGAATAC+AGG + Chr2:5293278-5293297 None:intergenic 30.0%
ATAGTTTGATTCAGGAGAAA+AGG - Chr2:5293328-5293347 MsG0280006715.01.T01:three_prime_UTR 30.0%
ATCTTGGTTTAGATTTCTTC+TGG - Chr2:5294133-5294152 MsG0280006715.01.T01:CDS 30.0%
ATGAAAACCAAATCAGACTT+AGG - Chr2:5294700-5294719 MsG0280006715.01.T01:intron 30.0%
ATGAACTGAACAAAAGCAAT+TGG + Chr2:5295859-5295878 None:intergenic 30.0%
ATGGGATATACACCTTATTA+GGG + Chr2:5298375-5298394 None:intergenic 30.0%
ATGTCAATGAATGCATTTAC+AGG + Chr2:5294982-5295001 None:intergenic 30.0%
ATTCATACCTAAGTCTGATT+TGG + Chr2:5294710-5294729 None:intergenic 30.0%
CAAAAGAAAGCAGAAATATG+TGG + Chr2:5295810-5295829 None:intergenic 30.0%
CAATTACCAAACACAAACTA+TGG - Chr2:5294020-5294039 MsG0280006715.01.T01:intron 30.0%
CATTTCCATAGCTTAGTAAT+TGG - Chr2:5297711-5297730 MsG0280006715.01.T01:intron 30.0%
CTAATTACTTACTTCTTGCA+GGG - Chr2:5296806-5296825 MsG0280006715.01.T01:intron 30.0%
GTAAATGCATTCATTGACAT+AGG - Chr2:5294982-5295001 MsG0280006715.01.T01:intron 30.0%
GTCAAACTATACACATGAAT+TGG + Chr2:5295971-5295990 None:intergenic 30.0%
GTTGTATTTATCAAGAGAGT+AGG + Chr2:5297269-5297288 None:intergenic 30.0%
TAACTGATATCACAACACAA+AGG + Chr2:5294281-5294300 None:intergenic 30.0%
TAATAATTGCAAGTGTTTGG+AGG + Chr2:5297839-5297858 None:intergenic 30.0%
TAATTACTTACTTCTTGCAG+GGG - Chr2:5296807-5296826 MsG0280006715.01.T01:intron 30.0%
TAGATGATACAGGTATATGT+CGG - Chr2:5298070-5298089 MsG0280006715.01.T01:intron 30.0%
TATCAGAATCATATCCAGTA+AGG + Chr2:5298414-5298433 None:intergenic 30.0%
TCAAATCATTTGTAGCTGTT+TGG + Chr2:5296258-5296277 None:intergenic 30.0%
TCAATCCAAAAGATCTTCAT+CGG - Chr2:5298016-5298035 MsG0280006715.01.T01:intron 30.0%
TCCAATTCCTGAAATCTTAA+TGG + Chr2:5296943-5296962 None:intergenic 30.0%
TCTAATTCTAATGACAAGAG+TGG + Chr2:5295547-5295566 None:intergenic 30.0%
TGTGATTCTGTGAAATTTGT+TGG - Chr2:5293305-5293324 MsG0280006715.01.T01:three_prime_UTR 30.0%
TTACTGGATATGATTCTGAT+AGG - Chr2:5298413-5298432 MsG0280006715.01.T01:intron 30.0%
TTCATTGCGAAGATATTTAG+AGG - Chr2:5296869-5296888 MsG0280006715.01.T01:intron 30.0%
TTGCCATGTATAAACAATAG+GGG - Chr2:5294765-5294784 MsG0280006715.01.T01:intron 30.0%
TTTGTTGGATAGTTTGATTC+AGG - Chr2:5293320-5293339 MsG0280006715.01.T01:three_prime_UTR 30.0%
! AAACAATGATAATGACCTCT+AGG + Chr2:5294386-5294405 None:intergenic 30.0%
! AACAAAAACCTTTTTCCACT+AGG + Chr2:5295761-5295780 None:intergenic 30.0%
! GTGATAATTAACAGAGTGTT+TGG + Chr2:5295280-5295299 None:intergenic 30.0%
! TAGTTATGAATCTTTTGACG+AGG - Chr2:5297884-5297903 MsG0280006715.01.T01:intron 30.0%
! TATGCATTTTCTTTACCATC+AGG + Chr2:5296200-5296219 None:intergenic 30.0%
! TATTTTGCTCTTTTCCATAC+AGG - Chr2:5298881-5298900 MsG0280006715.01.T01:five_prime_UTR 30.0%
! TCAATTTCGTTCTTTTTGCA+GGG - Chr2:5293885-5293904 MsG0280006715.01.T01:intron 30.0%
! TTCAATTTCGTTCTTTTTGC+AGG - Chr2:5293884-5293903 MsG0280006715.01.T01:intron 30.0%
! TTCCAAACCTTTGAAAACAA+TGG - Chr2:5297106-5297125 MsG0280006715.01.T01:intron 30.0%
! TTCCATTGTTTTCAAAGGTT+TGG + Chr2:5297111-5297130 None:intergenic 30.0%
!! AGCTAAAATTGTTTTTCCTG+TGG - Chr2:5297549-5297568 MsG0280006715.01.T01:intron 30.0%
!! ATGTAGGCTTTTTCTCATTT+TGG - Chr2:5296376-5296395 MsG0280006715.01.T01:intron 30.0%
!! GACTATTTCTAAGAAACAAG+TGG + Chr2:5294598-5294617 None:intergenic 30.0%
!! TGCTATTTCAAACAATGTGT+AGG + Chr2:5296968-5296987 None:intergenic 30.0%
!!! ATTGTTTCTGTTCCGAATTT+TGG + Chr2:5297200-5297219 None:intergenic 30.0%
AACAGAAACAATGAGCCAAT+TGG - Chr2:5297208-5297227 MsG0280006715.01.T01:CDS 35.0%
AAGAAACCGTAATGTCAATG+AGG - Chr2:5294067-5294086 MsG0280006715.01.T01:CDS 35.0%
ACATCACCAAAGGATCAATT+TGG + Chr2:5296019-5296038 None:intergenic 35.0%
ACATCTGTCAACAGAATTGA+AGG + Chr2:5295485-5295504 None:intergenic 35.0%
ACCTCACATAACACATATCA+GGG + Chr2:5295118-5295137 None:intergenic 35.0%
ACTAAAGTTCTTACCTATGC+TGG + Chr2:5297608-5297627 None:intergenic 35.0%
ACTCAAATCGTGTTTCGAAA+TGG + Chr2:5295521-5295540 None:intergenic 35.0%
AGAAACCGTAATGTCAATGA+GGG - Chr2:5294068-5294087 MsG0280006715.01.T01:CDS 35.0%
AGATAAGTTTAAGAGGAAGG+GGG + Chr2:5294235-5294254 None:intergenic 35.0%
AGCTGAATTCATTTCCATTC+AGG + Chr2:5298158-5298177 None:intergenic 35.0%
AGGGTGATATAACTAATGCT+CGG - Chr2:5295429-5295448 MsG0280006715.01.T01:intron 35.0%
AGTAAGTGAGGAATAAACCA+TGG - Chr2:5293476-5293495 MsG0280006715.01.T01:three_prime_UTR 35.0%
AGTCTAACTATTAACAGACC+TGG - Chr2:5294614-5294633 MsG0280006715.01.T01:intron 35.0%
AGTTTGCAGATTGTGTTAGT+GGG - Chr2:5298338-5298357 MsG0280006715.01.T01:intron 35.0%
ATGAAACTCTACGCAAATCA+AGG + Chr2:5296742-5296761 None:intergenic 35.0%
ATTGAAGAAGCCATGAACTT+AGG + Chr2:5293200-5293219 None:intergenic 35.0%
CAAATACCTGACAGTATAGA+AGG + Chr2:5296907-5296926 None:intergenic 35.0%
CATAGACAACCTATCAATGA+AGG + Chr2:5294163-5294182 None:intergenic 35.0%
CTCAAATCGTGTTTCGAAAT+GGG + Chr2:5295520-5295539 None:intergenic 35.0%
GCATATGTCTATTAAAGGTG+AGG + Chr2:5296628-5296647 None:intergenic 35.0%
GCATTAATTACTCCACATCA+AGG + Chr2:5298313-5298332 None:intergenic 35.0%
GCCATTAAGATTTCAGGAAT+TGG - Chr2:5296939-5296958 MsG0280006715.01.T01:intron 35.0%
GCTAATTACTTACTTCTTGC+AGG - Chr2:5296805-5296824 MsG0280006715.01.T01:intron 35.0%
GCTGAATTCATTTCCATTCA+GGG + Chr2:5298157-5298176 None:intergenic 35.0%
GTAAGTGAGGAATAAACCAT+GGG - Chr2:5293477-5293496 MsG0280006715.01.T01:three_prime_UTR 35.0%
GTATTATCCGGATATCAAGA+TGG + Chr2:5294831-5294850 None:intergenic 35.0%
GTTTGGGTGATGATTATCTA+AGG + Chr2:5298747-5298766 None:intergenic 35.0%
TCAAATCGTGTTTCGAAATG+GGG + Chr2:5295519-5295538 None:intergenic 35.0%
TCTCATGATGAATGAACTTG+AGG + Chr2:5295607-5295626 None:intergenic 35.0%
TCTGGTTATCCTTCATTGAT+AGG - Chr2:5294151-5294170 MsG0280006715.01.T01:intron 35.0%
TGCCATGTATAAACAATAGG+GGG - Chr2:5294766-5294785 MsG0280006715.01.T01:intron 35.0%
TGCGAAGATATTTAGAGGAA+AGG - Chr2:5296874-5296893 MsG0280006715.01.T01:intron 35.0%
TGGAAAACTTACTTTGCATC+AGG + Chr2:5294912-5294931 None:intergenic 35.0%
TTCAAAGTTAGAAGTCGTAG+TGG + Chr2:5297146-5297165 None:intergenic 35.0%
TTGACATGGAGCAACAAAAA+AGG + Chr2:5296335-5296354 None:intergenic 35.0%
TTGGCTAGACTTTATAATGC+AGG + Chr2:5295952-5295971 None:intergenic 35.0%
TTTGACGAGGTGGTTTAAAA+TGG - Chr2:5297897-5297916 MsG0280006715.01.T01:intron 35.0%
! AAAACCTTTTTCCACTAGGT+CGG + Chr2:5295757-5295776 None:intergenic 35.0%
! ACTTGTAGCATGCTTTTGTT+TGG - Chr2:5297350-5297369 MsG0280006715.01.T01:intron 35.0%
! ATTTGGGACAACAAAAGACT+CGG + Chr2:5298710-5298729 None:intergenic 35.0%
! CAAATTGCTATTAGCCTGTA+TGG + Chr2:5298898-5298917 MsG0280006714.01.T01:CDS 35.0%
! CAATTTCGTTCTTTTTGCAG+GGG - Chr2:5293886-5293905 MsG0280006715.01.T01:intron 35.0%
! CAGGTCATTAGACATTTTGA+TGG - Chr2:5296140-5296159 MsG0280006715.01.T01:intron 35.0%
! GATGCAAAGTAAGTTTTCCA+TGG - Chr2:5294912-5294931 MsG0280006715.01.T01:intron 35.0%
! TCTAGTACAACTGGATTTTC+AGG + Chr2:5294573-5294592 None:intergenic 35.0%
! TCTTTTGGATTGAATCCTTC+TGG + Chr2:5298009-5298028 None:intergenic 35.0%
! TGAGAAGAAGTACAAGAGAA+TGG + Chr2:5293983-5294002 None:intergenic 35.0%
! TGTTTTCTCTTGTTCTGTTC+AGG - Chr2:5296121-5296140 MsG0280006715.01.T01:intron 35.0%
! TTATGAATCTTTTGACGAGG+TGG - Chr2:5297887-5297906 MsG0280006715.01.T01:intron 35.0%
!! AACACAAAGGAGTACTATAC+AGG + Chr2:5294268-5294287 None:intergenic 35.0%
!! AACCTTCTTCTTTCGCTTTT+CGG + Chr2:5293622-5293641 None:intergenic 35.0%
!! ATATTTTTGCGATCGCCAAA+AGG + Chr2:5296586-5296605 None:intergenic 35.0%
!! CTGGAATTACGACTACTTTT+TGG + Chr2:5297589-5297608 None:intergenic 35.0%
!! TAATTTTCATGGCCTTGATG+TGG - Chr2:5298298-5298317 MsG0280006715.01.T01:intron 35.0%
!! TAGACATTTTGATGGTTGCA+AGG - Chr2:5296148-5296167 MsG0280006715.01.T01:intron 35.0%
!! TATATCCCATTTCTAGCTTG+CGG - Chr2:5298385-5298404 MsG0280006715.01.T01:intron 35.0%
!! TGTTAGCTAAATTGGTTTGC+AGG - Chr2:5293586-5293605 MsG0280006715.01.T01:CDS 35.0%
!!! GAAGGATCATATGGTTTTGA+GGG - Chr2:5296061-5296080 MsG0280006715.01.T01:intron 35.0%
!!! GATTTGGTTTTCATCCGTAA+TGG + Chr2:5294694-5294713 None:intergenic 35.0%
!!! GCTTCATTTTTTGCAGTTAC+CGG - Chr2:5296417-5296436 MsG0280006715.01.T01:intron 35.0%
AAAGACTCGGAAGAAAGGAA+AGG + Chr2:5298697-5298716 None:intergenic 40.0%
AACCAAAACGACATCACCAA+AGG + Chr2:5296029-5296048 None:intergenic 40.0%
ACCTGGATAACACCTTCAAT+CGG + Chr2:5295407-5295426 None:intergenic 40.0%
AGAACTTGAAAATCTCTCCC+TGG - Chr2:5298558-5298577 MsG0280006715.01.T01:intron 40.0%
AGATAAGGTAGTAGACTGAC+TGG + Chr2:5296660-5296679 None:intergenic 40.0%
AGTAGTCGTAATTCCAGCAT+AGG - Chr2:5297592-5297611 MsG0280006715.01.T01:intron 40.0%
ATATGCAAGATCAGGAATCC+AGG + Chr2:5298579-5298598 None:intergenic 40.0%
ATCAGTGGATATGCAAGATC+AGG + Chr2:5298587-5298606 None:intergenic 40.0%
ATGTGGTTGAAATTCGACAG+AGG + Chr2:5295793-5295812 None:intergenic 40.0%
CAAAGCTTCAAGGGATAAGA+GGG - Chr2:5293500-5293519 MsG0280006715.01.T01:three_prime_UTR 40.0%
CAAATCGTGTTTCGAAATGG+GGG + Chr2:5295518-5295537 None:intergenic 40.0%
CAACAAAAGACTCGGAAGAA+AGG + Chr2:5298702-5298721 None:intergenic 40.0%
CAATCCCCTCATTGACATTA+CGG + Chr2:5294076-5294095 None:intergenic 40.0%
CACCTCACATAACACATATC+AGG + Chr2:5295119-5295138 None:intergenic 40.0%
CAGACATTTACTCAAACACC+TGG + Chr2:5293386-5293405 None:intergenic 40.0%
CCAAATACACTACGAATCAG+TGG + Chr2:5298602-5298621 None:intergenic 40.0%
CTCACTAATGCAAATGAAGG+AGG - Chr2:5294538-5294557 MsG0280006715.01.T01:intron 40.0%
CTCCTTCATTTGCATTAGTG+AGG + Chr2:5294540-5294559 None:intergenic 40.0%
GAAAAGCGAAAGAAGAAGGT+TGG - Chr2:5293621-5293640 MsG0280006715.01.T01:CDS 40.0%
GAAACCGTAATGTCAATGAG+GGG - Chr2:5294069-5294088 MsG0280006715.01.T01:CDS 40.0%
GAGTTTGCAGATTGTGTTAG+TGG - Chr2:5298337-5298356 MsG0280006715.01.T01:intron 40.0%
GATGTGAGATCTCAATGTCA+TGG + Chr2:5294960-5294979 None:intergenic 40.0%
GCCATGTATAAACAATAGGG+GGG - Chr2:5294767-5294786 MsG0280006715.01.T01:intron 40.0%
GCTTACTGCAAGTATGAGTT+GGG + Chr2:5296472-5296491 None:intergenic 40.0%
GTTACTCATGTACTGAAGGA+AGG - Chr2:5296839-5296858 MsG0280006715.01.T01:intron 40.0%
GTTGCTCCAAATTGATCCTT+TGG - Chr2:5296010-5296029 MsG0280006715.01.T01:intron 40.0%
GTTTCTTAGGCAAGTAAGTG+AGG - Chr2:5293464-5293483 MsG0280006715.01.T01:three_prime_UTR 40.0%
TACCGAAAAGCGAAAGAAGA+AGG - Chr2:5293617-5293636 MsG0280006715.01.T01:CDS 40.0%
TATGCAAGATCAGGAATCCA+GGG + Chr2:5298578-5298597 None:intergenic 40.0%
TCCCCCCTATTGTTTATACA+TGG + Chr2:5294771-5294790 None:intergenic 40.0%
TCCCTGATATGTGTTATGTG+AGG - Chr2:5295114-5295133 MsG0280006715.01.T01:intron 40.0%
TCCTGAAATCTTAATGGCGA+GGG + Chr2:5296937-5296956 None:intergenic 40.0%
TGCCTCACTAATGCAAATGA+AGG - Chr2:5294535-5294554 MsG0280006715.01.T01:intron 40.0%
TGCTTACTGCAAGTATGAGT+TGG + Chr2:5296473-5296492 None:intergenic 40.0%
TGGAACTTGGAAGGATCATA+TGG - Chr2:5296052-5296071 MsG0280006715.01.T01:intron 40.0%
TTAAACTATACACCACGCAC+TGG + Chr2:5296704-5296723 None:intergenic 40.0%
TTACCCTCAACCTCTTTCAT+CGG - Chr2:5296289-5296308 MsG0280006715.01.T01:intron 40.0%
TTCAAAGTTGCATCCCTGAA+TGG - Chr2:5298141-5298160 MsG0280006715.01.T01:intron 40.0%
TTCATCCATGTCATGAAGTC+CGG + Chr2:5296439-5296458 None:intergenic 40.0%
TTCCTGAAATCTTAATGGCG+AGG + Chr2:5296938-5296957 None:intergenic 40.0%
TTGCTGCATCATGATATGCA+GGG - Chr2:5295334-5295353 MsG0280006715.01.T01:intron 40.0%
TTGGATTGAATCCTTCTGGA+GGG + Chr2:5298005-5298024 None:intergenic 40.0%
TTTGGATTGAATCCTTCTGG+AGG + Chr2:5298006-5298025 None:intergenic 40.0%
! AAACCTTTTTCCACTAGGTC+GGG + Chr2:5295756-5295775 None:intergenic 40.0%
! AAAGCGCCATAGTTTGTGTT+TGG + Chr2:5294029-5294048 None:intergenic 40.0%
! AAATGAAAACTTTGGGGGCT+GGG + Chr2:5294491-5294510 None:intergenic 40.0%
! AAGGATCAATTTGGAGCAAC+AGG + Chr2:5296010-5296029 None:intergenic 40.0%
! ACAGAGTGTTTGGAATGTGA+AGG + Chr2:5295270-5295289 None:intergenic 40.0%
! ACGAGGTGGTTTAAAATGGT+AGG - Chr2:5297901-5297920 MsG0280006715.01.T01:intron 40.0%
! AGAAGCCGATGAAGATCTTT+TGG + Chr2:5298024-5298043 None:intergenic 40.0%
! GGTGGTTTAAAATGGTAGGA+AGG - Chr2:5297905-5297924 MsG0280006715.01.T01:intron 40.0%
! GGTTTAAAATGGTAGGAAGG+CGG - Chr2:5297908-5297927 MsG0280006715.01.T01:intron 40.0%
! GTTTAAAATGGTAGGAAGGC+GGG - Chr2:5297909-5297928 MsG0280006715.01.T01:intron 40.0%
! TAAATGAAAACTTTGGGGGC+TGG + Chr2:5294492-5294511 None:intergenic 40.0%
!! AACTCTAGAGCTCTCTTGTA+AGG + Chr2:5298511-5298530 None:intergenic 40.0%
!! ACTCTAGAGCTCTCTTGTAA+GGG + Chr2:5298510-5298529 None:intergenic 40.0%
!! AGCTATTGATTTGCAGCCAA+TGG - Chr2:5295379-5295398 MsG0280006715.01.T01:intron 40.0%
!! ATATCCCATTTCTAGCTTGC+GGG - Chr2:5298386-5298405 MsG0280006715.01.T01:intron 40.0%
!! CAAGTGGTTTCTAGTACAAC+TGG + Chr2:5294582-5294601 None:intergenic 40.0%
!! CCACTGATTCGTAGTGTATT+TGG - Chr2:5298599-5298618 MsG0280006715.01.T01:CDS 40.0%
!! GGAAGGATCATATGGTTTTG+AGG - Chr2:5296060-5296079 MsG0280006715.01.T01:intron 40.0%
!! GTAGCATGCTTTTGTTTGGT+TGG - Chr2:5297354-5297373 MsG0280006715.01.T01:intron 40.0%
!! TTGGTTTGTTGGAACTTGGA+AGG - Chr2:5296043-5296062 MsG0280006715.01.T01:intron 40.0%
!!! ATCCTTTGGTGATGTCGTTT+TGG - Chr2:5296024-5296043 MsG0280006715.01.T01:intron 40.0%
!!! CGTTTTGGTTTGTTGGAACT+TGG - Chr2:5296039-5296058 MsG0280006715.01.T01:intron 40.0%
!!! GGGAGAGATTTTCAAGTTCT+CGG + Chr2:5298558-5298577 None:intergenic 40.0%
!!! GTGATGTCGTTTTGGTTTGT+TGG - Chr2:5296032-5296051 MsG0280006715.01.T01:intron 40.0%
AAACCATGGGCAAAGCTTCA+AGG - Chr2:5293490-5293509 MsG0280006715.01.T01:three_prime_UTR 45.0%
AAACTGCAAATGCCTCTGCA+AGG + Chr2:5297969-5297988 None:intergenic 45.0%
AACCATGGGCAAAGCTTCAA+GGG - Chr2:5293491-5293510 MsG0280006715.01.T01:three_prime_UTR 45.0%
AACTGCAAATGCCTCTGCAA+GGG + Chr2:5297968-5297987 None:intergenic 45.0%
ACTCATGTACTGAAGGAAGG+AGG - Chr2:5296842-5296861 MsG0280006715.01.T01:intron 45.0%
AGAAGGTTGGAAGTCCATCA+GGG - Chr2:5298046-5298065 MsG0280006715.01.T01:intron 45.0%
AGAATCTCGTACAGTGTACG+AGG + Chr2:5293225-5293244 None:intergenic 45.0%
AGTTACCGGACTTCATGACA+TGG - Chr2:5296431-5296450 MsG0280006715.01.T01:intron 45.0%
ATCCACTGCCTAAAGTTGCT+GGG - Chr2:5298440-5298459 MsG0280006715.01.T01:CDS 45.0%
ATGGGTCGTATACTATGACC+AGG + Chr2:5294635-5294654 None:intergenic 45.0%
CACAAGCCTTCTATACTGTC+AGG - Chr2:5296898-5296917 MsG0280006715.01.T01:intron 45.0%
CCTATGTTGATATGCACTCC+AGG - Chr2:5293365-5293384 MsG0280006715.01.T01:three_prime_UTR 45.0%
CCTGAAATCTTAATGGCGAG+GGG + Chr2:5296936-5296955 None:intergenic 45.0%
CCTGGAGTGCATATCAACAT+AGG + Chr2:5293368-5293387 None:intergenic 45.0%
CGTAATGTCAATGAGGGGAT+TGG - Chr2:5294074-5294093 MsG0280006715.01.T01:CDS 45.0%
CTCATGTACTGAAGGAAGGA+GGG - Chr2:5296843-5296862 MsG0280006715.01.T01:intron 45.0%
CTGCATATCATGATGCAGCA+AGG + Chr2:5295335-5295354 None:intergenic 45.0%
CTTCAAGGGATAAGAGGGTA+TGG - Chr2:5293505-5293524 MsG0280006715.01.T01:three_prime_UTR 45.0%
CTTGCTGCATCATGATATGC+AGG - Chr2:5295333-5295352 MsG0280006715.01.T01:intron 45.0%
GAAAATTACTCCCCTCCAGA+AGG - Chr2:5297991-5298010 MsG0280006715.01.T01:intron 45.0%
GAAGAAGCCATGAACTTAGG+AGG + Chr2:5293197-5293216 None:intergenic 45.0%
GCAAAGCTTCAAGGGATAAG+AGG - Chr2:5293499-5293518 MsG0280006715.01.T01:three_prime_UTR 45.0%
GGGGAACTAACATTCTGTAC+TGG + Chr2:5294464-5294483 None:intergenic 45.0%
GTTGCAGCCATCTTGATATC+CGG - Chr2:5294821-5294840 MsG0280006715.01.T01:intron 45.0%
TAGTTATATCACCCTGCACC+TGG + Chr2:5295424-5295443 None:intergenic 45.0%
TATCCACTGCCTAAAGTTGC+TGG - Chr2:5298439-5298458 MsG0280006715.01.T01:CDS 45.0%
TATGTTCCCCCAGCAACTTT+AGG + Chr2:5298451-5298470 None:intergenic 45.0%
TTAGTTGTTCACCCTTGCAG+AGG - Chr2:5297954-5297973 MsG0280006715.01.T01:intron 45.0%
TTGCAGATTGTGTTAGTGGG+TGG - Chr2:5298341-5298360 MsG0280006715.01.T01:intron 45.0%
! AACCTTTTTCCACTAGGTCG+GGG + Chr2:5295755-5295774 None:intergenic 45.0%
! AATGAAAACTTTGGGGGCTG+GGG + Chr2:5294490-5294509 None:intergenic 45.0%
! AGATTGTGTTAGTGGGTGGT+TGG - Chr2:5298345-5298364 MsG0280006715.01.T01:intron 45.0%
! GTAGATTTATGTGCTGCTCC+AGG - Chr2:5293920-5293939 MsG0280006715.01.T01:intron 45.0%
! TCTAGAGCTCTCTTGTAAGG+GGG + Chr2:5298508-5298527 None:intergenic 45.0%
! TGGATTGAATCCTTCTGGAG+GGG + Chr2:5298004-5298023 None:intergenic 45.0%
!! CTCTAGAGCTCTCTTGTAAG+GGG + Chr2:5298509-5298528 None:intergenic 45.0%
!! TATCCCATTTCTAGCTTGCG+GGG - Chr2:5298387-5298406 MsG0280006715.01.T01:intron 45.0%
!! TCCGATTGAAGGTGTTATCC+AGG - Chr2:5295403-5295422 MsG0280006715.01.T01:intron 45.0%
!! TCTTCATCGGCTTCTTGAGA+AGG - Chr2:5298029-5298048 MsG0280006715.01.T01:intron 45.0%
ACACCTTCAATCGGAGCCAT+TGG + Chr2:5295398-5295417 None:intergenic 50.0%
ACCATCGCACACAACAAGGT+CGG + Chr2:5296174-5296193 None:intergenic 50.0%
ACTCCTACAGGTGCACTTGT+TGG + Chr2:5297299-5297318 None:intergenic 50.0%
ATCCCTTGAAGCTTTGCCCA+TGG + Chr2:5293496-5293515 None:intergenic 50.0%
CCATCAGGGGTAGATGATAC+AGG - Chr2:5298060-5298079 MsG0280006715.01.T01:intron 50.0%
CCCCTCGCCATTAAGATTTC+AGG - Chr2:5296933-5296952 MsG0280006715.01.T01:intron 50.0%
CCTGTATCATCTACCCCTGA+TGG + Chr2:5298063-5298082 None:intergenic 50.0%
CTAGAGCTCTCTTGTAAGGG+GGG + Chr2:5298507-5298526 None:intergenic 50.0%
CTTTGCATCAGGTGCAAGCT+TGG + Chr2:5294901-5294920 None:intergenic 50.0%
GAAGGTTGGAAGTCCATCAG+GGG - Chr2:5298047-5298066 MsG0280006715.01.T01:intron 50.0%
GAGAAGGTTGGAAGTCCATC+AGG - Chr2:5298045-5298064 MsG0280006715.01.T01:intron 50.0%
GGCTTTGCAAAAGTCACCAC+AGG + Chr2:5297568-5297587 None:intergenic 50.0%
GGTCCGATGAAAGAGGTTGA+GGG + Chr2:5296295-5296314 None:intergenic 50.0%
GTGGTTGGAAGGCCCTAATA+AGG - Chr2:5298360-5298379 MsG0280006715.01.T01:intron 50.0%
TAATGCTCGGACTGCTGAAG+TGG - Chr2:5295442-5295461 MsG0280006715.01.T01:intron 50.0%
TAGAGCTCTCTTGTAAGGGG+GGG + Chr2:5298506-5298525 None:intergenic 50.0%
TCCACTGCCTAAAGTTGCTG+GGG - Chr2:5298441-5298460 MsG0280006715.01.T01:CDS 50.0%
TCTCGTTGGTCCGATGAAAG+AGG + Chr2:5296302-5296321 None:intergenic 50.0%
TGGGGGAACATATCAGAGCT+TGG - Chr2:5298459-5298478 MsG0280006715.01.T01:CDS 50.0%
TGGTCCGATGAAAGAGGTTG+AGG + Chr2:5296296-5296315 None:intergenic 50.0%
! ATGAAAACTTTGGGGGCTGG+GGG + Chr2:5294489-5294508 None:intergenic 50.0%
! GCAAGTGTTTGGAGGCACAA+GGG + Chr2:5297831-5297850 None:intergenic 50.0%
! TGCAAGTGTTTGGAGGCACA+AGG + Chr2:5297832-5297851 None:intergenic 50.0%
! TGTGTTAGTGGGTGGTTGGA+AGG - Chr2:5298349-5298368 MsG0280006715.01.T01:intron 50.0%
!! CATCGGCTTCTTGAGAAGGT+TGG - Chr2:5298033-5298052 MsG0280006715.01.T01:intron 50.0%
!! GAAGGTGTTATCCAGGTGCA+GGG - Chr2:5295410-5295429 MsG0280006715.01.T01:intron 50.0%
!! TGAAGGTGTTATCCAGGTGC+AGG - Chr2:5295409-5295428 MsG0280006715.01.T01:intron 50.0%
AGGTCCCCGCAAGCTAGAAA+TGG + Chr2:5298394-5298413 None:intergenic 55.0%
ATGTATCCACCCCGACCTAG+TGG - Chr2:5295743-5295762 MsG0280006715.01.T01:intron 55.0%
CACCCCGACCTAGTGGAAAA+AGG - Chr2:5295750-5295769 MsG0280006715.01.T01:intron 55.0%
CAGCCAATGGCTCCGATTGA+AGG - Chr2:5295392-5295411 MsG0280006715.01.T01:intron 55.0%
CCACTGCCTAAAGTTGCTGG+GGG - Chr2:5298442-5298461 MsG0280006715.01.T01:CDS 55.0%
CTCTTGTAAGGGGGGGCAAT+AGG + Chr2:5298499-5298518 None:intergenic 55.0%
GAGCACCATCGCACACAACA+AGG + Chr2:5296178-5296197 None:intergenic 55.0%
GCACCAACAAGTGCACCTGT+AGG - Chr2:5297293-5297312 MsG0280006715.01.T01:intron 55.0%
GGGGCAATAGGAGGTTGTAC+TGG + Chr2:5298487-5298506 None:intergenic 55.0%
GGTCCCCGCAAGCTAGAAAT+GGG + Chr2:5298393-5298412 None:intergenic 55.0%
TTGTAAGGGGGGGCAATAGG+AGG + Chr2:5298496-5298515 None:intergenic 55.0%
! CTTTTTCCACTAGGTCGGGG+TGG + Chr2:5295752-5295771 None:intergenic 55.0%
AATGCGCACACACCAGTGCG+TGG - Chr2:5296689-5296708 MsG0280006715.01.T01:CDS 60.0%
AGGCAGCTGGAGTCAGGTAC+TGG - Chr2:5293940-5293959 MsG0280006715.01.T01:intron 60.0%
AGTACCTGACTCCAGCTGCC+TGG + Chr2:5293941-5293960 None:intergenic 60.0%
CAGGTGCAAGCTTGGCTGGA+AGG + Chr2:5294893-5294912 None:intergenic 60.0%
CCCCCAGCAACTTTAGGCAG+TGG + Chr2:5298445-5298464 None:intergenic 60.0%
GCATCAGGTGCAAGCTTGGC+TGG + Chr2:5294897-5294916 None:intergenic 60.0%
GTGTGCGATGGTGCTCCTGA+TGG - Chr2:5296182-5296201 MsG0280006715.01.T01:intron 60.0%
! AAACTTTGGGGGCTGGGGGT+AGG + Chr2:5294485-5294504 None:intergenic 60.0%
! AACTTTGGGGGCTGGGGGTA+GGG + Chr2:5294484-5294503 None:intergenic 60.0%
! CTAGCTTGCGGGGACCTTAC+TGG - Chr2:5298397-5298416 MsG0280006715.01.T01:intron 60.0%
! GCCGACCTTGTTGTGTGCGA+TGG - Chr2:5296170-5296189 MsG0280006715.01.T01:intron 60.0%
! TATGTGCTGCTCCAGGCAGC+TGG - Chr2:5293927-5293946 MsG0280006715.01.T01:intron 60.0%
TGCTCCAGGCAGCTGGAGTC+AGG - Chr2:5293934-5293953 MsG0280006715.01.T01:intron 65.0%
! ACTTTGGGGGCTGGGGGTAG+GGG + Chr2:5294483-5294502 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 5293191 5298926 5293191 ID=MsG0280006715.01;Name=MsG0280006715.01
Chr2 mRNA 5293191 5298926 5293191 ID=MsG0280006715.01.T01;Parent=MsG0280006715.01;Name=MsG0280006715.01.T01;_AED=0.45;_eAED=0.46;_QI=181|0.9|0.90|1|0.9|0.81|11|338|300
Chr2 exon 5293191 5293770 5293191 ID=MsG0280006715.01.T01:exon:2163;Parent=MsG0280006715.01.T01
Chr2 exon 5294036 5294159 5294036 ID=MsG0280006715.01.T01:exon:2162;Parent=MsG0280006715.01.T01
Chr2 exon 5295198 5295290 5295198 ID=MsG0280006715.01.T01:exon:2161;Parent=MsG0280006715.01.T01
Chr2 exon 5295632 5295684 5295632 ID=MsG0280006715.01.T01:exon:2160;Parent=MsG0280006715.01.T01
Chr2 exon 5295914 5295974 5295914 ID=MsG0280006715.01.T01:exon:2159;Parent=MsG0280006715.01.T01
Chr2 exon 5296654 5296762 5296654 ID=MsG0280006715.01.T01:exon:2158;Parent=MsG0280006715.01.T01
Chr2 exon 5297198 5297247 5297198 ID=MsG0280006715.01.T01:exon:2157;Parent=MsG0280006715.01.T01
Chr2 exon 5298162 5298211 5298162 ID=MsG0280006715.01.T01:exon:2156;Parent=MsG0280006715.01.T01
Chr2 exon 5298416 5298509 5298416 ID=MsG0280006715.01.T01:exon:2155;Parent=MsG0280006715.01.T01
Chr2 exon 5298596 5298644 5298596 ID=MsG0280006715.01.T01:exon:2154;Parent=MsG0280006715.01.T01
Chr2 exon 5298768 5298926 5298768 ID=MsG0280006715.01.T01:exon:2153;Parent=MsG0280006715.01.T01
Chr2 five_prime_UTR 5298768 5298926 5298768 ID=MsG0280006715.01.T01:five_prime_utr;Parent=MsG0280006715.01.T01
Chr2 five_prime_UTR 5298623 5298644 5298623 ID=MsG0280006715.01.T01:five_prime_utr;Parent=MsG0280006715.01.T01
Chr2 CDS 5298596 5298622 5298596 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5298416 5298509 5298416 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5298162 5298211 5298162 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5297198 5297247 5297198 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5296654 5296762 5296654 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5295914 5295974 5295914 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5295632 5295684 5295632 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5295198 5295290 5295198 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5294036 5294159 5294036 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 CDS 5293529 5293770 5293529 ID=MsG0280006715.01.T01:cds;Parent=MsG0280006715.01.T01
Chr2 three_prime_UTR 5293191 5293528 5293191 ID=MsG0280006715.01.T01:three_prime_utr;Parent=MsG0280006715.01.T01
Gene Sequence

>MsG0280006715.01.T01

ATGGGCAAAGCTTCAAGGGATAAGAGGGATATATATTACCGAAAAGCGAAAGAAGAAGGTTGGCGTGCTCGAAGTGCTTTTAAACTTCTTCAGATAGATGAAGAATTTAACATTTTTGAAGGGGTGAAACGTGTTGTAGATTTATGTGCTGCTCCAGGCAGCTGGAGTCAGGTTTTGAGTCGTAAACTGTACCTTCCAGCCAAGCTTGCACCTGATGCAAAGGATGAAAAGCTTCCTCTTATTGTAGCTATTGATTTGCAGCCAATGGCTCCGATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGGACTGCTGAAGTGGTCATTAGACATTTTGATGGTTGCAAGGCCGACCTTGTTGTGTGCGATGGTGCTCCTGATGTTACCGGACTTCATGACATGGATGAATTTGTTCAATCCCAACTCATACTTGCAGGGTTAACAATTGTTACTCATGTACTGAAGGAAGGAGGGAAGTTCATTGCGAAGATATTTAGAGGAAAGGACACAAGCCTTCTATACTGTCAGTTGTTCACCCTTGCAGAGGCATTTGCAGTTTGTGAAAATTACTCCCCTCCAGAAGGATTCAATCCAAAAGATCTTCATCGGCTTCTTGAGAAGGTTGGAAGTCCATCAGGGGTAGATGATACAGATTGTGTTAGTGGGTGGTTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGCGGGGACCTTACTGGATATGATTCTGATAGGTCATATCCACTGCCTAAAGTTGCTGGGGGAACATATCAGAGCTTGGATCCAGTACAACCTCCTATTGCCCCCCCTTACAAGAGAGCTCTAGAGTTAAAAAAAGCATCAACTCAAGGATTCCGAGAACTTGAAAATCTCTCCCTGGATTCCTGA
Protein sequence

>MsG0280006715.01.T01

MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLAPDAKDEKLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLFTLAEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCVSGWLEGPNKVYIPFLACGDLTGYDSDRSYPLPKVAGGTYQSLDPVQPPIAPPYKRALELKKASTQGFRELENLSLDS*