AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049057.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049057.01.T01 MTR_5g091190 98.361 122 2 0 20 141 57 178 6.02e-83 241
MsG0080049057.01.T01 MTR_5g016040 73.750 80 4 1 44 123 15 77 1.88e-31 108
MsG0080049057.01.T01 MTR_7g035145 60.000 60 24 0 44 103 15 74 3.86e-19 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049057.01.T01 AT2G42975 80.342 117 19 2 26 141 74 187 1.12e-60 185

Find 23 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCACTTACTCACTTAAA+AGG 0.228648 contig639end:-14990 MsG0080049057.01.T01:intergenic
GACAGACCTTAGCAGTAAAA+TGG 0.232759 contig639end:-14836 MsG0080049057.01.T01:intergenic
TGACTAAACTAAATGCAAAA+AGG 0.314151 contig639end:-14883 MsG0080049057.01.T01:intergenic
CTTCCACCTCTTATAATACT+AGG 0.378568 contig639end:+14717 MsG0080049057.01.T01:exon
CTAGGAATAGCTATATTAAC+TGG 0.405799 contig639end:+14735 MsG0080049057.01.T01:exon
CAAGTGATCAAATTCCTCTA+AGG 0.421629 contig639end:+14907 MsG0080049057.01.T01:exon
ACAGACCTTAGCAGTAAAAT+GGG 0.424669 contig639end:-14835 MsG0080049057.01.T01:intergenic
AAGAGAAAGTGCTTCCTTAG+AGG 0.424993 contig639end:-14921 MsG0080049057.01.T01:intergenic
TTGCGCAGTTGGTTGGAGAA+AGG 0.457947 contig639end:+14532 MsG0080049057.01.T01:exon
TGCGCAGTTGGTTGGAGAAA+GGG 0.462113 contig639end:+14533 MsG0080049057.01.T01:exon
ACGCGAACAGCTTGCGCAGT+TGG 0.472439 contig639end:+14521 MsG0080049057.01.T01:exon
GCTATTCCTAGTATTATAAG+AGG 0.488609 contig639end:-14723 MsG0080049057.01.T01:intergenic
GATGATTTCAGCCTCCCCTT+AGG 0.492056 contig639end:+14558 MsG0080049057.01.T01:exon
AGTAAATATATTATGACTCA+AGG 0.535405 contig639end:-14774 MsG0080049057.01.T01:intergenic
GAACAGCTTGCGCAGTTGGT+TGG 0.535588 contig639end:+14525 MsG0080049057.01.T01:exon
AAGAATGAGTTATGTGGTGA+TGG 0.540228 contig639end:-14944 MsG0080049057.01.T01:intergenic
ATCTAAATGAAGTGTCTCAA+AGG 0.575590 contig639end:+14652 MsG0080049057.01.T01:exon
ATTCCTAGTATTATAAGAGG+TGG 0.585295 contig639end:-14720 MsG0080049057.01.T01:intergenic
TTTCTAGGGTATGAAAGTGA+TGG 0.626170 contig639end:+14477 MsG0080049057.01.T01:intron
CTGTGGAAGAATGAGTTATG+TGG 0.660416 contig639end:-14950 MsG0080049057.01.T01:intergenic
AAGCTCAAATGATATAACTG+TGG 0.666299 contig639end:-14967 MsG0080049057.01.T01:intergenic
AGTTCTTAACAACTTCACAA+AGG 0.682749 contig639end:+14607 MsG0080049057.01.T01:exon
CAGACCTTAGCAGTAAAATG+GGG 0.729707 contig639end:-14834 MsG0080049055.01.T01:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAACCAAATATAAAAAAT+AGG - contig639end:14413-14432 MsG0080049057.01.T01:intergenic 10.0%
!!! AATTTGTTTAATATTGAAAT+TGG + contig639end:13530-13549 MsG0080049057.01.T01:intron 10.0%
!!! ATTATTATTATTTCTTTTCT+CGG + contig639end:11172-11191 MsG0080049057.01.T01:intron 10.0%
!!! TCTTTATATAATTTAGTTTA+TGG - contig639end:11536-11555 MsG0080049057.01.T01:intergenic 10.0%
!!! TGAATATATTTTTCATTTAA+TGG + contig639end:15007-15026 MsG0080049057.01.T01:exon 10.0%
!! AAAAATAAAACCAAAGTTAA+AGG - contig639end:13107-13126 MsG0080049057.01.T01:intergenic 15.0%
!! AAATCACTTATTTCAATAAA+AGG + contig639end:10989-11008 MsG0080049057.01.T01:exon 15.0%
!! AAGGTAATGTAAAATAAATT+TGG - contig639end:14045-14064 MsG0080049057.01.T01:intergenic 15.0%
!! AATCACTTATTTCAATAAAA+GGG + contig639end:10990-11009 MsG0080049057.01.T01:exon 15.0%
!! AGGTAATGTAAAATAAATTT+GGG - contig639end:14044-14063 MsG0080049057.01.T01:intergenic 15.0%
!! ATTATAAGAAATGAAATAGA+AGG - contig639end:12233-12252 MsG0080049057.01.T01:intergenic 15.0%
!! GATGATGATTTAAAAAATAA+CGG + contig639end:12621-12640 MsG0080049057.01.T01:intron 15.0%
!! TTATAAGAAATGAAATAGAA+GGG - contig639end:12232-12251 MsG0080049057.01.T01:intergenic 15.0%
!! TTATAGAAAATCAGTAAAAT+TGG - contig639end:12996-13015 MsG0080049057.01.T01:intergenic 15.0%
!!! AATTCTAATTTTTCATTTCA+AGG - contig639end:13416-13435 MsG0080049057.01.T01:intergenic 15.0%
!!! TAGAATTTTGATATTTGAAT+TGG + contig639end:13429-13448 MsG0080049057.01.T01:intron 15.0%
!!! TGTAACCTATTTTTTATATT+TGG + contig639end:14405-14424 MsG0080049057.01.T01:intron 15.0%
!!! TTCTCTTTTATATTTTCTTT+TGG + contig639end:12366-12385 MsG0080049057.01.T01:intron 15.0%
!!! TTTAACTTTGGTTTTATTTT+TGG + contig639end:13106-13125 MsG0080049057.01.T01:intron 15.0%
!!! TTTTCTATAATAATTTAGCA+TGG - contig639end:11689-11708 MsG0080049057.01.T01:intergenic 15.0%
!! AAAAAAAAATTTCTTGAAGG+GGG - contig639end:12705-12724 MsG0080049057.01.T01:intergenic 20.0%
!! AAGCATTATACTTCATTATT+TGG - contig639end:13634-13653 MsG0080049057.01.T01:intergenic 20.0%
!! AGATAAAAGAAAAGAGAATA+AGG - contig639end:11955-11974 MsG0080049057.01.T01:intergenic 20.0%
!! AGGAAAATAACTGAAATTAA+TGG - contig639end:12728-12747 MsG0080049057.01.T01:intergenic 20.0%
!! AGTAAATATATTATGACTCA+AGG - contig639end:14777-14796 MsG0080049057.01.T01:intergenic 20.0%
!! ATATACACAAAACGTAATTA+AGG - contig639end:11436-11455 MsG0080049057.01.T01:intergenic 20.0%
!! CAATAAAAACAATTCAATCA+AGG - contig639end:12748-12767 MsG0080049057.01.T01:intergenic 20.0%
!! GAAAAAAAAATTTCTTGAAG+GGG - contig639end:12706-12725 MsG0080049057.01.T01:intergenic 20.0%
!! GAAAAATACGAATAAGAAAA+TGG - contig639end:12054-12073 MsG0080049057.01.T01:intergenic 20.0%
!! GGAAAAAAAAATTTCTTGAA+GGG - contig639end:12707-12726 MsG0080049057.01.T01:intergenic 20.0%
!! TAAATGTAATCAAGTAAAAG+AGG + contig639end:12656-12675 MsG0080049057.01.T01:intron 20.0%
!! TATAAGAAATGAAATAGAAG+GGG - contig639end:12231-12250 MsG0080049057.01.T01:intergenic 20.0%
!! TGGAAAAAAAAATTTCTTGA+AGG - contig639end:12708-12727 MsG0080049057.01.T01:intergenic 20.0%
!! TTATTTCAATAAAAGGGAAA+AGG + contig639end:10996-11015 MsG0080049057.01.T01:exon 20.0%
!!! AATATACAAGAGTATAATCA+TGG + contig639end:12891-12910 MsG0080049057.01.T01:intron 20.0%
!!! AATATATCATATAGGGTATT+GGG + contig639end:11234-11253 MsG0080049057.01.T01:intron 20.0%
!!! AATATCATTTCCTTTAACTT+TGG + contig639end:13094-13113 MsG0080049057.01.T01:intron 20.0%
!!! ATTGATTTCTTTGAAATCAA+AGG - contig639end:11834-11853 MsG0080049057.01.T01:intergenic 20.0%
!!! GTGTAATCAAAATTTTCTAA+AGG + contig639end:12599-12618 MsG0080049057.01.T01:intron 20.0%
!!! TAATAACAACAAACTTTTGA+AGG + contig639end:12937-12956 MsG0080049057.01.T01:intron 20.0%
!!! TAATTTAGTTTATGGTGATA+AGG - contig639end:11528-11547 MsG0080049057.01.T01:intergenic 20.0%
!!! TATTTATGACTTTTATGGTT+AGG + contig639end:13712-13731 MsG0080049057.01.T01:intron 20.0%
!!! TCTAATATTTATTTTTGTCG+TGG + contig639end:13456-13475 MsG0080049057.01.T01:intron 20.0%
!!! TGATTTTGTATAACAACTAT+GGG + contig639end:14443-14462 MsG0080049057.01.T01:intron 20.0%
!!! TTCTTTAAGTTTTTACCTAA+GGG - contig639end:14576-14595 MsG0080049057.01.T01:intergenic 20.0%
!!! TTGATTTCTTTGAAATCAAA+GGG - contig639end:11833-11852 MsG0080049057.01.T01:intergenic 20.0%
!!! TTGATTTTGTATAACAACTA+TGG + contig639end:14442-14461 MsG0080049057.01.T01:intron 20.0%
!!! TTTCTTTAAGTTTTTACCTA+AGG - contig639end:14577-14596 MsG0080049057.01.T01:intergenic 20.0%
! AACAAAAAACATATAAGCAC+CGG - contig639end:12085-12104 MsG0080049057.01.T01:intergenic 25.0%
! AATAATTTAGCATGGAACAT+GGG - contig639end:11760-11779 MsG0080049057.01.T01:intergenic 25.0%
! AATACAAAAGCTTACATCTT+TGG + contig639end:11314-11333 MsG0080049057.01.T01:intron 25.0%
! AATACATTAACATAGAGATC+AGG - contig639end:14172-14191 MsG0080049057.01.T01:intergenic 25.0%
! ATAAGAAATGAAATAGAAGG+GGG - contig639end:12230-12249 MsG0080049057.01.T01:intergenic 25.0%
! ATACAAAAGCTTACATCTTT+GGG + contig639end:11315-11334 MsG0080049057.01.T01:intron 25.0%
! ATACATTAACATAGAGATCA+GGG - contig639end:14171-14190 MsG0080049057.01.T01:intergenic 25.0%
! ATACTCTTGTATATTGTTGT+GGG - contig639end:12886-12905 MsG0080049057.01.T01:intergenic 25.0%
! ATTGGAATCTAAAAAATCAC+TGG - contig639end:12978-12997 MsG0080049057.01.T01:intergenic 25.0%
! CAATATATCATATAGGGTAT+TGG + contig639end:11233-11252 MsG0080049057.01.T01:intron 25.0%
! CACATGCAATATATCATATA+GGG + contig639end:11227-11246 MsG0080049057.01.T01:intron 25.0%
! CACTTGAATTATCAATGATA+TGG - contig639end:13968-13987 MsG0080049057.01.T01:intergenic 25.0%
! CCATAAAAGTCATAAATAAC+AGG - contig639end:13710-13729 MsG0080049057.01.T01:intergenic 25.0%
! GAAAGACTTAAAAAACCAAA+AGG - contig639end:13508-13527 MsG0080049057.01.T01:intergenic 25.0%
! GTCTTAAAGATTTATGTGAA+AGG + contig639end:14357-14376 MsG0080049057.01.T01:intron 25.0%
! TAATAATTTAGCATGGAACA+TGG - contig639end:11761-11780 MsG0080049057.01.T01:intergenic 25.0%
! TATACTCTTGTATATTGTTG+TGG - contig639end:12887-12906 MsG0080049057.01.T01:intergenic 25.0%
! TATTCACTTACTCACTTAAA+AGG - contig639end:14993-15012 MsG0080049057.01.T01:intergenic 25.0%
! TCACATGCAATATATCATAT+AGG + contig639end:11226-11245 MsG0080049057.01.T01:intron 25.0%
! TGACTAAACTAAATGCAAAA+AGG - contig639end:14886-14905 MsG0080049057.01.T01:intergenic 25.0%
! TGTCAAAAAGTTGTAGAAAA+TGG - contig639end:13242-13261 MsG0080049057.01.T01:intergenic 25.0%
! TTCCTTTATATACTAATCGT+GGG - contig639end:11885-11904 MsG0080049057.01.T01:intergenic 25.0%
! TTGGAATCTAAAAAATCACT+GGG - contig639end:12977-12996 MsG0080049057.01.T01:intergenic 25.0%
! TTTCCTATTTATACTTGAGA+GGG + contig639end:12415-12434 MsG0080049057.01.T01:intron 25.0%
!! CTCTTCATAGACATTAATTT+TGG - contig639end:14096-14115 MsG0080049057.01.T01:intergenic 25.0%
!! GTAGTATATTTGAAATCATG+TGG + contig639end:13921-13940 MsG0080049057.01.T01:intron 25.0%
!! TCAATTTTGTGACAACTTTT+AGG + contig639end:12549-12568 MsG0080049057.01.T01:intron 25.0%
!! TCGTATTTTTCTCTTTTTTC+CGG + contig639end:12063-12082 MsG0080049057.01.T01:intron 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG - contig639end:13321-13340 MsG0080049057.01.T01:intergenic 25.0%
!! TTTTCCTATTTATACTTGAG+AGG + contig639end:12414-12433 MsG0080049057.01.T01:intron 25.0%
!!! ATATGTTTTTTGTTTTCGAC+CGG + contig639end:12091-12110 MsG0080049057.01.T01:intron 25.0%
!!! CCTGTTATTTATGACTTTTA+TGG + contig639end:13707-13726 MsG0080049057.01.T01:intron 25.0%
!!! CTTTTTTTCTCTCTTTTCAT+TGG - contig639end:13334-13353 MsG0080049057.01.T01:intergenic 25.0%
!!! GACATGCTCTTTTTTTTTAA+AGG - contig639end:13056-13075 MsG0080049057.01.T01:intergenic 25.0%
!!! GTTATGAACTTATTTTCCTT+TGG - contig639end:13897-13916 MsG0080049057.01.T01:intergenic 25.0%
!!! TCTTTAAGTTTTTACCTAAG+GGG - contig639end:14575-14594 MsG0080049057.01.T01:intergenic 25.0%
AAAACAATGGAGAGAGAAAA+AGG - contig639end:13308-13327 MsG0080049056.01.T01:intergenic 30.0%
AAAATAAATTTGGGCACAAG+AGG - contig639end:14035-14054 MsG0080049057.01.T01:intergenic 30.0%
AAGCTCAAATGATATAACTG+TGG - contig639end:14970-14989 MsG0080049057.01.T01:intergenic 30.0%
ACATGCCTAAGATAAAAATC+CGG - contig639end:12113-12132 MsG0080049057.01.T01:intergenic 30.0%
AGAAACAAACAAGACAAACA+AGG + contig639end:10889-10908 MsG0080049057.01.T01:exon 30.0%
AGAGAAAGTAGCAAGTATTA+AGG - contig639end:12257-12276 MsG0080049057.01.T01:intergenic 30.0%
AGTTCTTAACAACTTCACAA+AGG + contig639end:14607-14626 MsG0080049057.01.T01:exon 30.0%
ATAAAGATGAGATGACACAA+AGG - contig639end:11286-11305 MsG0080049057.01.T01:intergenic 30.0%
ATTCCTAGTATTATAAGAGG+TGG - contig639end:14723-14742 MsG0080049057.01.T01:intergenic 30.0%
CACATAAAAGTTTCATGTGA+AGG - contig639end:14064-14083 MsG0080049057.01.T01:intergenic 30.0%
CTAGGAATAGCTATATTAAC+TGG + contig639end:14735-14754 MsG0080049057.01.T01:exon 30.0%
CTTCCTTTATATACTAATCG+TGG - contig639end:11886-11905 MsG0080049057.01.T01:intergenic 30.0%
GAAAATAGTGATTTCGAATG+TGG - contig639end:11930-11949 MsG0080049057.01.T01:intergenic 30.0%
GAGAAAAACCAATTGTTCAA+TGG + contig639end:13859-13878 MsG0080049057.01.T01:intron 30.0%
GATGTGATGATTTAATGCAA+AGG - contig639end:11208-11227 MsG0080049057.01.T01:intergenic 30.0%
GCTATTCCTAGTATTATAAG+AGG - contig639end:14726-14745 MsG0080049057.01.T01:intergenic 30.0%
GGTCTGATCATACATAAAAT+TGG - contig639end:11575-11594 MsG0080049057.01.T01:intergenic 30.0%
GTAATCAAGTAAAAGAGGTA+AGG + contig639end:12661-12680 MsG0080049057.01.T01:intron 30.0%
GTTCTCTACTAGTATAGATA+TGG - contig639end:13578-13597 MsG0080049057.01.T01:intergenic 30.0%
TACCCACGATTAGTATATAA+AGG + contig639end:11880-11899 MsG0080049057.01.T01:intron 30.0%
TACTTGAGAGGGAAATAAAT+CGG + contig639end:12426-12445 MsG0080049057.01.T01:intron 30.0%
TATATTGTTGTGGGTGTATT+TGG - contig639end:12877-12896 MsG0080049057.01.T01:intergenic 30.0%
TGATGATTTAATGCAAAGGA+AGG - contig639end:11204-11223 MsG0080049057.01.T01:intergenic 30.0%
TGTCACTACTGATATGTATT+TGG + contig639end:14195-14214 MsG0080049057.01.T01:intron 30.0%
TTGCAAAACCATTGAACAAT+TGG - contig639end:13870-13889 MsG0080049057.01.T01:intergenic 30.0%
TTGGAGTCAAAATTGATTGA+TGG + contig639end:13125-13144 MsG0080049057.01.T01:intron 30.0%
TTTATGGTGATAAGGCAATA+TGG - contig639end:11520-11539 MsG0080049057.01.T01:intergenic 30.0%
TTTCCCTCTCAAGTATAAAT+AGG - contig639end:12421-12440 MsG0080049057.01.T01:intergenic 30.0%
! ATCTAAATGAAGTGTCTCAA+AGG + contig639end:14652-14671 MsG0080049057.01.T01:exon 30.0%
! CATTGCAACATTTTTGTTAG+AGG - contig639end:11387-11406 MsG0080049057.01.T01:intergenic 30.0%
! TCAAAATTGATTGATGGTAG+AGG + contig639end:13131-13150 MsG0080049057.01.T01:intron 30.0%
! TGTTTCTCTTTTGATCCTTT+TGG + contig639end:13490-13509 MsG0080049057.01.T01:intron 30.0%
!!! TCAACTTTTTTCGCAACTAT+AGG + contig639end:14681-14700 MsG0080049057.01.T01:exon 30.0%
AAAAGGAAAACGAGTTAGAG+GGG + contig639end:11013-11032 MsG0080049057.01.T01:exon 35.0%
AAGAATGAGTTATGTGGTGA+TGG - contig639end:14947-14966 MsG0080049057.01.T01:intergenic 35.0%
ACAGACCTTAGCAGTAAAAT+GGG - contig639end:14838-14857 MsG0080049057.01.T01:intergenic 35.0%
AGACATACATGCATATCAGT+AGG - contig639end:14341-14360 MsG0080049057.01.T01:intergenic 35.0%
CAAGTGATCAAATTCCTCTA+AGG + contig639end:14907-14926 MsG0080049057.01.T01:exon 35.0%
CATCAAAAAGGGGTGATTTA+GGG - contig639end:11060-11079 MsG0080049057.01.T01:intergenic 35.0%
CTTCCACCTCTTATAATACT+AGG + contig639end:14717-14736 MsG0080049057.01.T01:exon 35.0%
GAAAAGGAAAACGAGTTAGA+GGG + contig639end:11012-11031 MsG0080049057.01.T01:exon 35.0%
GACATACATGCATATCAGTA+GGG - contig639end:14340-14359 MsG0080049057.01.T01:intergenic 35.0%
GATGAAGGAGAAGAAAACTA+GGG + contig639end:11080-11099 MsG0080049057.01.T01:exon 35.0%
TCTCCTTCATCCATCAAAAA+GGG - contig639end:11071-11090 MsG0080049057.01.T01:intergenic 35.0%
TGAGGATGAAAGTTGAAGAA+TGG - contig639end:11723-11742 MsG0080049057.01.T01:intergenic 35.0%
TTCTCCTTCATCCATCAAAA+AGG - contig639end:11072-11091 MsG0080049057.01.T01:intergenic 35.0%
TTTCTTGAAGGGGGAATTAA+TGG - contig639end:12696-12715 MsG0080049057.01.T01:intergenic 35.0%
! GGATTTTTATCTTAGGCATG+TGG + contig639end:12112-12131 MsG0080049057.01.T01:intron 35.0%
! TTAAGTTTTTACCTAAGGGG+AGG - contig639end:14572-14591 MsG0080049057.01.T01:intergenic 35.0%
! TTACACACGGTTTTCAATCT+CGG + contig639end:14245-14264 MsG0080049057.01.T01:intron 35.0%
! TTCGACCGGATTTTTATCTT+AGG + contig639end:12105-12124 MsG0080049057.01.T01:intron 35.0%
!! ATGGTTTTGCAAATCTCCAA+AGG + contig639end:13878-13897 MsG0080049057.01.T01:intron 35.0%
!! GTTCTAGTTCATGTCAATGA+AGG + contig639end:13672-13691 MsG0080049057.01.T01:intron 35.0%
!! TATAGGGTATTGGGATCATT+TGG + contig639end:11243-11262 MsG0080049057.01.T01:intron 35.0%
!! TTTCTAGGGTATGAAAGTGA+TGG + contig639end:14477-14496 MsG0080049057.01.T01:intron 35.0%
!!! AGTGGATTTTAACTTTGGAG+TGG + contig639end:12494-12513 MsG0080049057.01.T01:intron 35.0%
!!! CTCGAAGTGGATTTTAACTT+TGG + contig639end:12489-12508 MsG0080049057.01.T01:intron 35.0%
CAGACCTTAGCAGTAAAATG+GGG - contig639end:14837-14856 MsG0080049057.01.T01:intergenic 40.0%
CCATCAAAAAGGGGTGATTT+AGG - contig639end:11061-11080 MsG0080049057.01.T01:intergenic 40.0%
CTCCTTCATCCATCAAAAAG+GGG - contig639end:11070-11089 MsG0080049057.01.T01:intergenic 40.0%
CTGTGGAAGAATGAGTTATG+TGG - contig639end:14953-14972 MsG0080049057.01.T01:intergenic 40.0%
GACAGACCTTAGCAGTAAAA+TGG - contig639end:14839-14858 MsG0080049057.01.T01:intergenic 40.0%
GCTTAGCAAAACTAGATACG+AGG + contig639end:13650-13669 MsG0080049057.01.T01:intron 40.0%
GGAAAAGGAAAACGAGTTAG+AGG + contig639end:11011-11030 MsG0080049057.01.T01:exon 40.0%
GGATGAAGGAGAAGAAAACT+AGG + contig639end:11079-11098 MsG0080049057.01.T01:exon 40.0%
GTATTTGGATTCCCTGCAAT+GGG + contig639end:14210-14229 MsG0080049057.01.T01:intron 40.0%
TAACATAGAGATCAGGGCAT+GGG - contig639end:14165-14184 MsG0080049057.01.T01:intergenic 40.0%
TGGGATTGTGGTGATATATG+AGG - contig639end:11741-11760 MsG0080049057.01.T01:intergenic 40.0%
TGTATTTGGATTCCCTGCAA+TGG + contig639end:14209-14228 MsG0080049057.01.T01:intron 40.0%
TTAACATAGAGATCAGGGCA+TGG - contig639end:14166-14185 MsG0080049057.01.T01:intergenic 40.0%
! CCTAAATCACCCCTTTTTGA+TGG + contig639end:11058-11077 MsG0080049057.01.T01:exon 40.0%
! GAAAAGTATGCGGTTACACA+CGG + contig639end:14232-14251 MsG0080049057.01.T01:intron 40.0%
! GGAGAAGAAAACTAGGGTTT+TGG + contig639end:11086-11105 MsG0080049057.01.T01:CDS 40.0%
! TTAGCCCCATTTTACTGCTA+AGG + contig639end:14830-14849 MsG0080049057.01.T01:exon 40.0%
!! AACAACTATGGGAGCATTTC+TGG + contig639end:14454-14473 MsG0080049057.01.T01:intron 40.0%
!! AAGAGAAAGTGCTTCCTTAG+AGG - contig639end:14924-14943 MsG0080049057.01.T01:intergenic 40.0%
!! GAAAACTAGGGTTTTGGTGA+CGG + contig639end:11092-11111 MsG0080049057.01.T01:CDS 40.0%
AAATAGAAGGGGGCTGAAAG+CGG - contig639end:12220-12239 MsG0080049057.01.T01:intergenic 45.0%
AGTCGAGATGAAACTCGAAG+TGG + contig639end:12476-12495 MsG0080049057.01.T01:intron 45.0%
CTTGAGAGAGAGAGGGAAAA+AGG + contig639end:11117-11136 MsG0080049057.01.T01:CDS 45.0%
GAAGTCAACTTGCATACCAG+TGG - contig639end:13803-13822 MsG0080049057.01.T01:intergenic 45.0%
TAGCATGGAACATGGGATTG+TGG - contig639end:11753-11772 MsG0080049057.01.T01:intergenic 45.0%
! ACGAGTTAGAGGGGTGATTT+TGG + contig639end:11022-11041 MsG0080049057.01.T01:exon 45.0%
! CCTGCAATGGGAAAAGTATG+CGG + contig639end:14222-14241 MsG0080049057.01.T01:intron 45.0%
! CGAGTTAGAGGGGTGATTTT+GGG + contig639end:11023-11042 MsG0080049057.01.T01:exon 45.0%
! CGCATACTTTTCCCATTGCA+GGG - contig639end:14224-14243 MsG0080049057.01.T01:intergenic 45.0%
! TCGTGCACAGCTAGATCTTT+TGG + contig639end:13750-13769 MsG0080049057.01.T01:CDS 45.0%
! TCTTTGGGCAAAAGTACACG+TGG + contig639end:11330-11349 MsG0080049057.01.T01:intron 45.0%
!! CACCCCTTTTTGATGGATGA+AGG + contig639end:11065-11084 MsG0080049057.01.T01:exon 45.0%
!! GGGAGCATTTCTGGTTTCTA+GGG + contig639end:14463-14482 MsG0080049057.01.T01:intron 45.0%
!! TGGGAGCATTTCTGGTTTCT+AGG + contig639end:14462-14481 MsG0080049057.01.T01:intron 45.0%
!! AAAAAAATATATAATTAGTT+TGG - contig639end:11596-11615 MsG0080049057.01.T01:intergenic 5.0%
!!! ATTATTTCATTTTAAATAAA+TGG - contig639end:11469-11488 MsG0080049057.01.T01:intergenic 5.0%
GATCAGGGCATGGGAGAAAT+AGG - contig639end:14156-14175 MsG0080049057.01.T01:intergenic 50.0%
GATGATTTCAGCCTCCCCTT+AGG + contig639end:14558-14577 MsG0080049057.01.T01:exon 50.0%
TCTACAAGCTCATCAGCCAC+TGG + contig639end:13784-13803 MsG0080049057.01.T01:CDS 50.0%
TGCGCAGTTGGTTGGAGAAA+GGG + contig639end:14533-14552 MsG0080049057.01.T01:exon 50.0%
TTGCGCAGTTGGTTGGAGAA+AGG + contig639end:14532-14551 MsG0080049057.01.T01:exon 50.0%
! CCGCATACTTTTCCCATTGC+AGG - contig639end:14225-14244 MsG0080049057.01.T01:intergenic 50.0%
GAACAGCTTGCGCAGTTGGT+TGG + contig639end:14525-14544 MsG0080049057.01.T01:exon 55.0%
GACGGCTCTTGAGAGAGAGA+GGG + contig639end:11110-11129 MsG0080049057.01.T01:CDS 55.0%
TGACGGCTCTTGAGAGAGAG+AGG + contig639end:11109-11128 MsG0080049057.01.T01:CDS 55.0%
TTGTCGTCTTCGTGCGACGT+TGG - contig639end:10937-10956 MsG0080049057.01.T01:intergenic 55.0%
ACGCGAACAGCTTGCGCAGT+TGG + contig639end:14521-14540 MsG0080049057.01.T01:exon 60.0%
Chromosome Type Strat End Strand Name
contig639end gene 10886 15028 10886 ID=MsG0080049057.01;
contig639end mRNA 10886 15028 10886 ID=MsG0080049057.01.T01;Parent=MsG0080049057.01
contig639end exon 10886 11138 10886 ID=MsG0080049057.01.T01.exon;Parent=MsG0080049057.01.T01
contig639end CDS 11081 11138 11081 ID=MsG0080049057.01.T01.cds;Parent=MsG0080049057.01.T01
contig639end CDS 13734 13805 13734 ID=MsG0080049057.01.T01.cds;Parent=MsG0080049057.01.T01
contig639end exon 13734 13805 13734 ID=MsG0080049057.01.T01.exon;Parent=MsG0080049057.01.T01
contig639end CDS 14484 14779 14484 ID=MsG0080049057.01.T01.cds;Parent=MsG0080049057.01.T01
contig639end exon 14484 15028 14484 ID=MsG0080049057.01.T01.exon;Parent=MsG0080049057.01.T01
Gene Sequence

>MsG0080049057.01.T01

ATGAAGGAGAAGAAAACTAGGGTTTTGGTGACGGCTCTTGAGAGAGAGAGGGAAAAAGGATCTTTATCTTCTTCTCGTGCACAGCTAGATCTTTTGGAGCAATTTACTTCTACAAGCTCATCAGCCACTGGGTATGAAAGTGATGGCAGCTCTCAGAGACTTACAATACGCGAACAGCTTGCGCAGTTGGTTGGAGAAAGGGATGATGATTTCAGCCTCCCCTTAGGTAAAAACTTAAAGAAAGTGAGTGCAAAGTTCTTAACAACTTCACAAAGGAGAAATATCAAGAGACAGAGTTATCTAAATGAAGTGTCTCAAAGGAATGATTCAACTTTTTTCGCAACTATAGGAGCATTTGTACTTCTTCCACCTCTTATAATACTAGGAATAGCTATATTAACTGGTTATGTACAGCTTTTACCTTGA
Protein sequence

>MsG0080049057.01.T01

MKEKKTRVLVTALEREREKGSLSSSRAQLDLLEQFTSTSSSATGYESDGSSQRLTIREQLAQLVGERDDDFSLPLGKNLKKVSAKFLTTSQRRNIKRQSYLNEVSQRNDSTFFATIGAFVLLPPLIILGIAILTGYVQLLP*