AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015496.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015496.01.T01 MTR_3g070960 95.238 231 11 0 1 231 1 231 2.43e-162 448
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015496.01.T01 AT3G56010 58.519 135 44 4 99 231 77 201 3.54e-48 157

Find 78 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATGGACATGAAATTTA+AGG 0.175869 3:-70994921 None:intergenic
GAATAGCTGATTTATATATT+TGG 0.179692 3:+70994887 MsG0380015496.01.T01:three_prime_UTR
CATCTCATTAGTCATTAAAA+TGG 0.237690 3:-70994830 None:intergenic
AACAAATTACCAGGGGCTTC+TGG 0.243956 3:-70994660 None:intergenic
ATATTATTCATTGGATGTTA+TGG 0.284331 3:+70995235 MsG0380015496.01.T01:three_prime_UTR
TTCAACAGATGCTAGTAATA+AGG 0.322512 3:+70994353 MsG0380015496.01.T01:CDS
TGAGATGATCGTGTGGTTAC+AGG 0.325931 3:-70994495 None:intergenic
TTTGTCAAGGAGAAAAGATT+TGG 0.326672 3:+70994297 MsG0380015496.01.T01:CDS
TGGTAGTTGGTACACAAAAT+AGG 0.353646 3:-70995160 None:intergenic
CTGAAAATGCTGCTATGTTA+TGG 0.360213 3:-70993130 None:intergenic
TTTATCAGCACAGTGATGTT+TGG 0.378545 3:+70994774 MsG0380015496.01.T01:CDS
GTGTGCTCTGAGTGGCCTTC+GGG 0.390366 3:-70994245 None:intergenic
AGAAAGTGAGAGAGAGGATA+AGG 0.396564 3:+70994517 MsG0380015496.01.T01:CDS
TAGTCAAAACTTACAATTGT+TGG 0.397714 3:+70995119 MsG0380015496.01.T01:three_prime_UTR
TCAAAAGTCCAACCTTCCTT+TGG 0.411926 3:-70994705 None:intergenic
AGTGTGCTCTGAGTGGCCTT+CGG 0.416107 3:-70994246 None:intergenic
AGTCAAAACTTACAATTGTT+GGG 0.416660 3:+70995120 MsG0380015496.01.T01:three_prime_UTR
GTCTGTGATTCTGCCTGAGC+AGG 0.422298 3:-70994429 None:intergenic
GTGGTTACAGGTTGCGACTT+AGG 0.426739 3:-70994483 None:intergenic
GGTAGATGTTAACTGATCAT+TGG 0.433318 3:-70994403 None:intergenic
ACTAATGAGATGAGATTTCA+AGG 0.437444 3:+70994841 MsG0380015496.01.T01:exon
CAAACTATCACGATGCATCT+AGG 0.448156 3:+70994202 MsG0380015496.01.T01:CDS
TCGACATTAACATCAATTCA+TGG 0.448507 3:-70994936 None:intergenic
CTGTCATCAAACAAATTACC+AGG 0.451100 3:-70994669 None:intergenic
GATGCTAGTAATAAGGATAC+TGG 0.451608 3:+70994360 MsG0380015496.01.T01:CDS
GGCCTTCGGGAAAGAAGCTC+CGG 0.457076 3:-70994232 None:intergenic
ACCAGGGGCTTCTGGAAGTC+CGG 0.457894 3:-70994652 None:intergenic
GAAAGTGAGAGAGAGGATAA+GGG 0.460702 3:+70994518 MsG0380015496.01.T01:CDS
TGATTCTGCCTGAGCAGGAT+TGG 0.469008 3:-70994424 None:intergenic
AAAACAGCTAAATCAGAAAT+GGG 0.480346 3:+70994573 MsG0380015496.01.T01:CDS
CGTTGAGGTGAAGCTGATGA+TGG 0.495454 3:-70993247 None:intergenic
GCATGTGAGATATTATTCAT+TGG 0.501758 3:+70995226 MsG0380015496.01.T01:three_prime_UTR
GCAGATCCATTGGAAACCTC+TGG 0.503333 3:-70994453 None:intergenic
TGGAGAGATATTTGATTCAG+AGG 0.505324 3:+70995030 MsG0380015496.01.T01:three_prime_UTR
TTTGGTATTATTTCATTAGG+TGG 0.509257 3:+70995010 MsG0380015496.01.T01:three_prime_UTR
AACATCTACCAATCCTGCTC+AGG 0.512154 3:+70994416 MsG0380015496.01.T01:CDS
AGGAGATGCTGCAGATCCAT+TGG 0.516503 3:-70994463 None:intergenic
CTAGTAATAAGGATACTGGC+AGG 0.528322 3:+70994364 MsG0380015496.01.T01:CDS
TGCCGGAGCTTCTTTCCCGA+AGG 0.532920 3:+70994230 MsG0380015496.01.T01:CDS
TGTGTTTCAAAGACCAGCCA+TGG 0.534784 3:-70993185 None:intergenic
CATTGTATATCATATTCACT+AGG 0.536095 3:-70995059 None:intergenic
ACTTACATTGTGTGGAAAGT+TGG 0.543190 3:+70994801 MsG0380015496.01.T01:CDS
TATCTCACATGCACCACATA+GGG 0.555350 3:-70995215 None:intergenic
TTGGAACAACTTACATTGTG+TGG 0.560213 3:+70994793 MsG0380015496.01.T01:CDS
AAACGAGGAGTCCTAGAGCT+TGG 0.564690 3:-70995180 None:intergenic
ATTGTGATGCTATCCATGGC+TGG 0.565322 3:+70993172 MsG0380015496.01.T01:five_prime_UTR
GAGGGATGCCAAAGGAAGGT+TGG 0.568563 3:+70994697 MsG0380015496.01.T01:CDS
ATATCTCACATGCACCACAT+AGG 0.572190 3:-70995216 None:intergenic
TTGATACAATAATCCCTATG+TGG 0.580161 3:+70995202 MsG0380015496.01.T01:three_prime_UTR
CATCTCAGAAAGTGAGAGAG+AGG 0.580497 3:+70994511 MsG0380015496.01.T01:CDS
TGTACCAACTACCAAGCTCT+AGG 0.587624 3:+70995169 MsG0380015496.01.T01:three_prime_UTR
GTTGAGGTGAAGCTGATGAT+GGG 0.590259 3:-70993246 None:intergenic
GTTGGTACACAAAATAGGAC+AGG 0.591014 3:-70995155 None:intergenic
ACACTCGTTTCGATAACGTC+GGG 0.594355 3:+70994264 MsG0380015496.01.T01:CDS
TTGTTTGATGACAGCAAACG+AGG 0.599920 3:+70994678 MsG0380015496.01.T01:CDS
GATGCATCTAGGTATTCTGC+CGG 0.605736 3:+70994213 MsG0380015496.01.T01:CDS
CACTTTCTGAGATGATCGTG+TGG 0.606839 3:-70994502 None:intergenic
TCCGGACTTCCAGAAGCCCC+TGG 0.607439 3:+70994651 MsG0380015496.01.T01:CDS
GAGTCCTAGAGCTTGGTAGT+TGG 0.617030 3:-70995173 None:intergenic
AAACGAGGGATGCCAAAGGA+AGG 0.625366 3:+70994693 MsG0380015496.01.T01:CDS
TCGAGTTCTTAACCAGTCCA+AGG 0.632326 3:+70994545 MsG0380015496.01.T01:CDS
CATCATCAGCTTCACCTCAA+CGG 0.635332 3:+70993248 MsG0380015496.01.T01:CDS
TAGTAATAAGGATACTGGCA+GGG 0.635455 3:+70994365 MsG0380015496.01.T01:CDS
GGGAACAAGAATGTTTGTCA+AGG 0.643523 3:+70994284 MsG0380015496.01.T01:CDS
GAAGATTGTGATGCTATCCA+TGG 0.649169 3:+70993168 MsG0380015496.01.T01:five_prime_UTR
CAGCAAACGAGGGATGCCAA+AGG 0.649716 3:+70994689 MsG0380015496.01.T01:CDS
CAGACACCAGAGGTTTCCAA+TGG 0.649775 3:+70994447 MsG0380015496.01.T01:CDS
AGAAAGAGATCAGAACCACC+AGG 0.655199 3:-70994732 None:intergenic
TGTTTGATGACAGCAAACGA+GGG 0.666281 3:+70994679 MsG0380015496.01.T01:CDS
AGAAATGGGAAGTAGTGTGT+TGG 0.668878 3:+70994587 MsG0380015496.01.T01:CDS
CACACTCGTTTCGATAACGT+CGG 0.679278 3:+70994263 MsG0380015496.01.T01:CDS
GGCAGAATCACAGACACCAG+AGG 0.679651 3:+70994437 MsG0380015496.01.T01:CDS
TGTCATCAAACAAATTACCA+GGG 0.683437 3:-70994668 None:intergenic
AGTGAGAGAGAGGATAAGGG+CGG 0.687543 3:+70994521 MsG0380015496.01.T01:CDS
TTGAGGTGAAGCTGATGATG+GGG 0.696015 3:-70993245 None:intergenic
GTCATCAAACAAATTACCAG+GGG 0.699685 3:-70994667 None:intergenic
CGAAACGAGTGTGCTCTGAG+TGG 0.707929 3:-70994253 None:intergenic
GGGATTATTGTATCAAAACG+AGG 0.720600 3:-70995195 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATCAAATCAAATAAAAA+TGG + Chr3:70993209-70993228 MsG0380015496.01.T01:exon 10.0%
!!! TTTTTTACTCTTATTATTTT+TGG + Chr3:70994992-70995011 MsG0380015496.01.T01:three_prime_UTR 10.0%
!! ACATAATTGAATTATATTGA+AGG - Chr3:70994117-70994136 None:intergenic 15.0%
!! ATTATCTTCTAATATGTAAT+AGG + Chr3:70994057-70994076 MsG0380015496.01.T01:intron 15.0%
!!! ATTTTTGGTATTATTTCATT+AGG + Chr3:70995007-70995026 MsG0380015496.01.T01:three_prime_UTR 15.0%
!! AAGGAAATATGACTATTTAA+AGG - Chr3:70993777-70993796 None:intergenic 20.0%
!! AGGAAATATGACTATTTAAA+GGG - Chr3:70993776-70993795 None:intergenic 20.0%
!! ATACTAAACATTATTTGACT+TGG + Chr3:70993442-70993461 MsG0380015496.01.T01:intron 20.0%
!! ATATTATTCATTGGATGTTA+TGG + Chr3:70995235-70995254 MsG0380015496.01.T01:three_prime_UTR 20.0%
!! GTAACAAGTTTATAGATTTA+AGG + Chr3:70993351-70993370 MsG0380015496.01.T01:intron 20.0%
!! TGTAAAAAGTAACAAATATG+TGG - Chr3:70993329-70993348 None:intergenic 20.0%
!!! AGTTTATAGATTTAAGGTTA+TGG + Chr3:70993357-70993376 MsG0380015496.01.T01:intron 20.0%
!!! GAATAGCTGATTTATATATT+TGG + Chr3:70994887-70994906 MsG0380015496.01.T01:three_prime_UTR 20.0%
!!! TACTAAACATTATTTGACTT+GGG + Chr3:70993443-70993462 MsG0380015496.01.T01:intron 20.0%
! AAAAACAGCTAAATCAGAAA+TGG + Chr3:70994572-70994591 MsG0380015496.01.T01:CDS 25.0%
! AAAACAGCTAAATCAGAAAT+GGG + Chr3:70994573-70994592 MsG0380015496.01.T01:CDS 25.0%
! AGTCAAAACTTACAATTGTT+GGG + Chr3:70995120-70995139 MsG0380015496.01.T01:three_prime_UTR 25.0%
! ATTCATGGACATGAAATTTA+AGG - Chr3:70994924-70994943 None:intergenic 25.0%
! CATCTCATTAGTCATTAAAA+TGG - Chr3:70994833-70994852 None:intergenic 25.0%
! CATTGTATATCATATTCACT+AGG - Chr3:70995062-70995081 None:intergenic 25.0%
! CCCAAAATTGACATATAAAA+GGG - Chr3:70994016-70994035 None:intergenic 25.0%
! TAAATAGTCATATTTCCTTG+TGG + Chr3:70993778-70993797 MsG0380015496.01.T01:intron 25.0%
! TAACAACGTGTTATGTTAAT+CGG + Chr3:70993514-70993533 MsG0380015496.01.T01:intron 25.0%
! TAGTCAAAACTTACAATTGT+TGG + Chr3:70995119-70995138 MsG0380015496.01.T01:three_prime_UTR 25.0%
! TATAAAATGCGCTATATCTA+TGG + Chr3:70993601-70993620 MsG0380015496.01.T01:intron 25.0%
! TATTTAAAGGGCTAATTCTA+CGG - Chr3:70993764-70993783 None:intergenic 25.0%
! TCCCAAAATTGACATATAAA+AGG - Chr3:70994017-70994036 None:intergenic 25.0%
! TTAACATAAAGCAATTTCAC+TGG - Chr3:70993581-70993600 None:intergenic 25.0%
! TTTGGTATTATTTCATTAGG+TGG + Chr3:70995010-70995029 MsG0380015496.01.T01:three_prime_UTR 25.0%
!! ATTTGCTTGTAATTGATTCT+TGG + Chr3:70993413-70993432 MsG0380015496.01.T01:intron 25.0%
!! CCCTTTTATATGTCAATTTT+GGG + Chr3:70994013-70994032 MsG0380015496.01.T01:intron 25.0%
!! TCCCTTTTATATGTCAATTT+TGG + Chr3:70994012-70994031 MsG0380015496.01.T01:intron 25.0%
!!! ATTTCTGATTTAGCTGTTTT+TGG - Chr3:70994573-70994592 None:intergenic 25.0%
!!! TTGTTTGATGATGAAAATGT+TGG + Chr3:70993965-70993984 MsG0380015496.01.T01:intron 25.0%
ACTAATGAGATGAGATTTCA+AGG + Chr3:70994841-70994860 MsG0380015496.01.T01:exon 30.0%
ATCTCAATTGATCCAATTGA+AGG - Chr3:70993689-70993708 None:intergenic 30.0%
CAATTGGATCAATTGAGATA+TGG + Chr3:70993690-70993709 MsG0380015496.01.T01:intron 30.0%
CACTATTTGCAACTGAAAAA+CGG - Chr3:70994326-70994345 None:intergenic 30.0%
GCATGTGAGATATTATTCAT+TGG + Chr3:70995226-70995245 MsG0380015496.01.T01:three_prime_UTR 30.0%
TAATCGGAAACAATATTCCT+TGG + Chr3:70993530-70993549 MsG0380015496.01.T01:intron 30.0%
TCGACATTAACATCAATTCA+TGG - Chr3:70994939-70994958 None:intergenic 30.0%
TGAAGGACTTATTGATCAAA+TGG - Chr3:70993672-70993691 None:intergenic 30.0%
TGATCAATAAGTCCTTCAAT+TGG + Chr3:70993674-70993693 MsG0380015496.01.T01:intron 30.0%
TGTCATCAAACAAATTACCA+GGG - Chr3:70994671-70994690 None:intergenic 30.0%
TTCAACAGATGCTAGTAATA+AGG + Chr3:70994353-70994372 MsG0380015496.01.T01:CDS 30.0%
TTGATACAATAATCCCTATG+TGG + Chr3:70995202-70995221 MsG0380015496.01.T01:three_prime_UTR 30.0%
TTTCATTATCCCTTAGAAGT+TGG + Chr3:70994176-70994195 MsG0380015496.01.T01:intron 30.0%
TTTGTCAAGGAGAAAAGATT+TGG + Chr3:70994297-70994316 MsG0380015496.01.T01:CDS 30.0%
! AGTTTGTTTCCAACTTCTAA+GGG - Chr3:70994188-70994207 None:intergenic 30.0%
! TAAGAAGAGTGTGTAAGTTA+TGG + Chr3:70993380-70993399 MsG0380015496.01.T01:intron 30.0%
!! CTTTTAAAGAAAGTGACAGA+GGG + Chr3:70994613-70994632 MsG0380015496.01.T01:CDS 30.0%
!! GGTGAGATTTATTGATTCAA+TGG + Chr3:70993711-70993730 MsG0380015496.01.T01:intron 30.0%
!! TAGTTTGTTTCCAACTTCTA+AGG - Chr3:70994189-70994208 None:intergenic 30.0%
!!! GTTTTGACTAAACAACTACA+AGG - Chr3:70995109-70995128 None:intergenic 30.0%
!!! TGTCGAGTTTTTTGCTTTTT+AGG + Chr3:70994953-70994972 MsG0380015496.01.T01:three_prime_UTR 30.0%
ACTTACATTGTGTGGAAAGT+TGG + Chr3:70994801-70994820 MsG0380015496.01.T01:CDS 35.0%
CTATCTTAAGAAGTTCACCA+AGG - Chr3:70993550-70993569 None:intergenic 35.0%
CTGAAAATGCTGCTATGTTA+TGG - Chr3:70993133-70993152 None:intergenic 35.0%
CTGTCATCAAACAAATTACC+AGG - Chr3:70994672-70994691 None:intergenic 35.0%
CTTTGCAGTTATGTTGTGAT+CGG + Chr3:70993914-70993933 MsG0380015496.01.T01:intron 35.0%
GAACTTAACAAAGATCCACA+AGG - Chr3:70993796-70993815 None:intergenic 35.0%
GATGCTAGTAATAAGGATAC+TGG + Chr3:70994360-70994379 MsG0380015496.01.T01:CDS 35.0%
GGGATTATTGTATCAAAACG+AGG - Chr3:70995198-70995217 None:intergenic 35.0%
GGTAGATGTTAACTGATCAT+TGG - Chr3:70994406-70994425 None:intergenic 35.0%
GTCATCAAACAAATTACCAG+GGG - Chr3:70994670-70994689 None:intergenic 35.0%
TAGTAATAAGGATACTGGCA+GGG + Chr3:70994365-70994384 MsG0380015496.01.T01:CDS 35.0%
TGGAGAGATATTTGATTCAG+AGG + Chr3:70995030-70995049 MsG0380015496.01.T01:three_prime_UTR 35.0%
TTGGAACAACTTACATTGTG+TGG + Chr3:70994793-70994812 MsG0380015496.01.T01:CDS 35.0%
TTTATCAGCACAGTGATGTT+TGG + Chr3:70994774-70994793 MsG0380015496.01.T01:CDS 35.0%
! TGGTAGTTGGTACACAAAAT+AGG - Chr3:70995163-70995182 None:intergenic 35.0%
!! GCTTTTAAAGAAAGTGACAG+AGG + Chr3:70994612-70994631 MsG0380015496.01.T01:CDS 35.0%
!!! TTTAGCTGTTTTTGGTTCCT+TGG - Chr3:70994565-70994584 None:intergenic 35.0%
AAAGTGACAGAGGGAAAAAG+AGG + Chr3:70994622-70994641 MsG0380015496.01.T01:CDS 40.0%
AGAAAGTGAGAGAGAGGATA+AGG + Chr3:70994517-70994536 MsG0380015496.01.T01:CDS 40.0%
AGAAATGGGAAGTAGTGTGT+TGG + Chr3:70994587-70994606 MsG0380015496.01.T01:CDS 40.0%
ATATCTCACATGCACCACAT+AGG - Chr3:70995219-70995238 None:intergenic 40.0%
CAAACTATCACGATGCATCT+AGG + Chr3:70994202-70994221 MsG0380015496.01.T01:CDS 40.0%
CATTAAACCAAAGTTCCAGG+TGG + Chr3:70993832-70993851 MsG0380015496.01.T01:intron 40.0%
CTAGTAATAAGGATACTGGC+AGG + Chr3:70994364-70994383 MsG0380015496.01.T01:CDS 40.0%
CTATGGTGCACATGTTAAGT+AGG + Chr3:70993618-70993637 MsG0380015496.01.T01:intron 40.0%
GAAAGTGAGAGAGAGGATAA+GGG + Chr3:70994518-70994537 MsG0380015496.01.T01:CDS 40.0%
GAAGATTGTGATGCTATCCA+TGG + Chr3:70993168-70993187 MsG0380015496.01.T01:five_prime_UTR 40.0%
GATAGAAAAACGTACCGTTG+AGG - Chr3:70993265-70993284 None:intergenic 40.0%
GGGAACAAGAATGTTTGTCA+AGG + Chr3:70994284-70994303 MsG0380015496.01.T01:CDS 40.0%
GTGCATTAAACCAAAGTTCC+AGG + Chr3:70993829-70993848 MsG0380015496.01.T01:intron 40.0%
GTTGGTACACAAAATAGGAC+AGG - Chr3:70995158-70995177 None:intergenic 40.0%
TATCTCACATGCACCACATA+GGG - Chr3:70995218-70995237 None:intergenic 40.0%
TCAAAAGTCCAACCTTCCTT+TGG - Chr3:70994708-70994727 None:intergenic 40.0%
! AGCAGCATTTTCAGTCTTAG+CGG + Chr3:70993139-70993158 MsG0380015496.01.T01:five_prime_UTR 40.0%
! GTTAAGTAGGTGCTGTACTA+TGG + Chr3:70993631-70993650 MsG0380015496.01.T01:intron 40.0%
! TGTTTGATGACAGCAAACGA+GGG + Chr3:70994679-70994698 MsG0380015496.01.T01:CDS 40.0%
! TTGTTTGATGACAGCAAACG+AGG + Chr3:70994678-70994697 MsG0380015496.01.T01:CDS 40.0%
! TTTTCAGTCTTAGCGGTAAG+AGG + Chr3:70993146-70993165 MsG0380015496.01.T01:five_prime_UTR 40.0%
!!! GGTTGGACTTTTGATTTTCC+TGG + Chr3:70994714-70994733 MsG0380015496.01.T01:CDS 40.0%
!!! TGGACTTTTGATTTTCCTGG+TGG + Chr3:70994717-70994736 MsG0380015496.01.T01:CDS 40.0%
AACAAATTACCAGGGGCTTC+TGG - Chr3:70994663-70994682 None:intergenic 45.0%
AACATCTACCAATCCTGCTC+AGG + Chr3:70994416-70994435 MsG0380015496.01.T01:CDS 45.0%
ACACTCGTTTCGATAACGTC+GGG + Chr3:70994264-70994283 MsG0380015496.01.T01:CDS 45.0%
AGAAAGAGATCAGAACCACC+AGG - Chr3:70994735-70994754 None:intergenic 45.0%
AGAAAGTCCACCTGGAACTT+TGG - Chr3:70993842-70993861 None:intergenic 45.0%
ATTGTGATGCTATCCATGGC+TGG + Chr3:70993172-70993191 MsG0380015496.01.T01:five_prime_UTR 45.0%
CACACTCGTTTCGATAACGT+CGG + Chr3:70994263-70994282 MsG0380015496.01.T01:CDS 45.0%
CATCATCAGCTTCACCTCAA+CGG + Chr3:70993248-70993267 MsG0380015496.01.T01:CDS 45.0%
CATCTCAGAAAGTGAGAGAG+AGG + Chr3:70994511-70994530 MsG0380015496.01.T01:CDS 45.0%
GATGCATCTAGGTATTCTGC+CGG + Chr3:70994213-70994232 MsG0380015496.01.T01:CDS 45.0%
GGGAAAAAGAGGAGAAGATC+CGG + Chr3:70994633-70994652 MsG0380015496.01.T01:CDS 45.0%
GTTGAGGTGAAGCTGATGAT+GGG - Chr3:70993249-70993268 None:intergenic 45.0%
TCGAGTTCTTAACCAGTCCA+AGG + Chr3:70994545-70994564 MsG0380015496.01.T01:CDS 45.0%
TGAGATGATCGTGTGGTTAC+AGG - Chr3:70994498-70994517 None:intergenic 45.0%
TGTACCAACTACCAAGCTCT+AGG + Chr3:70995169-70995188 MsG0380015496.01.T01:three_prime_UTR 45.0%
TGTGTTTCAAAGACCAGCCA+TGG - Chr3:70993188-70993207 None:intergenic 45.0%
! CATTCTAGAGAAAGTCCACC+TGG - Chr3:70993850-70993869 None:intergenic 45.0%
! TTGAGGTGAAGCTGATGATG+GGG - Chr3:70993248-70993267 None:intergenic 45.0%
!! CACTTTCTGAGATGATCGTG+TGG - Chr3:70994505-70994524 None:intergenic 45.0%
!!! CTGTTTTTGGTTCCTTGGAC+TGG - Chr3:70994560-70994579 None:intergenic 45.0%
AAACGAGGAGTCCTAGAGCT+TGG - Chr3:70995183-70995202 None:intergenic 50.0%
AAACGAGGGATGCCAAAGGA+AGG + Chr3:70994693-70994712 MsG0380015496.01.T01:CDS 50.0%
AGGAGATGCTGCAGATCCAT+TGG - Chr3:70994466-70994485 None:intergenic 50.0%
AGTGAGAGAGAGGATAAGGG+CGG + Chr3:70994521-70994540 MsG0380015496.01.T01:CDS 50.0%
CAGACACCAGAGGTTTCCAA+TGG + Chr3:70994447-70994466 MsG0380015496.01.T01:CDS 50.0%
CGTTGAGGTGAAGCTGATGA+TGG - Chr3:70993250-70993269 None:intergenic 50.0%
GCAGATCCATTGGAAACCTC+TGG - Chr3:70994456-70994475 None:intergenic 50.0%
GTGGTTACAGGTTGCGACTT+AGG - Chr3:70994486-70994505 None:intergenic 50.0%
TGATTCTGCCTGAGCAGGAT+TGG - Chr3:70994427-70994446 None:intergenic 50.0%
! GAGTCCTAGAGCTTGGTAGT+TGG - Chr3:70995176-70995195 None:intergenic 50.0%
CAGCAAACGAGGGATGCCAA+AGG + Chr3:70994689-70994708 MsG0380015496.01.T01:CDS 55.0%
GAGGGATGCCAAAGGAAGGT+TGG + Chr3:70994697-70994716 MsG0380015496.01.T01:CDS 55.0%
GGCAGAATCACAGACACCAG+AGG + Chr3:70994437-70994456 MsG0380015496.01.T01:CDS 55.0%
GTCTGTGATTCTGCCTGAGC+AGG - Chr3:70994432-70994451 None:intergenic 55.0%
! AGTGTGCTCTGAGTGGCCTT+CGG - Chr3:70994249-70994268 None:intergenic 55.0%
! CGAAACGAGTGTGCTCTGAG+TGG - Chr3:70994256-70994275 None:intergenic 55.0%
GGCCTTCGGGAAAGAAGCTC+CGG - Chr3:70994235-70994254 None:intergenic 60.0%
TGCCGGAGCTTCTTTCCCGA+AGG + Chr3:70994230-70994249 MsG0380015496.01.T01:CDS 60.0%
! ACCAGGGGCTTCTGGAAGTC+CGG - Chr3:70994655-70994674 None:intergenic 60.0%
! GTGTGCTCTGAGTGGCCTTC+GGG - Chr3:70994248-70994267 None:intergenic 60.0%
TCCGGACTTCCAGAAGCCCC+TGG + Chr3:70994651-70994670 MsG0380015496.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 70993119 70995276 70993119 ID=MsG0380015496.01;Name=MsG0380015496.01
Chr3 mRNA 70993119 70995276 70993119 ID=MsG0380015496.01.T01;Parent=MsG0380015496.01;Name=MsG0380015496.01.T01;_AED=0.23;_eAED=0.23;_QI=109|1|1|1|0|0|2|431|231
Chr3 exon 70993119 70993269 70993119 ID=MsG0380015496.01.T01:exon:23752;Parent=MsG0380015496.01.T01
Chr3 exon 70994192 70995276 70994192 ID=MsG0380015496.01.T01:exon:23753;Parent=MsG0380015496.01.T01
Chr3 five_prime_UTR 70993119 70993227 70993119 ID=MsG0380015496.01.T01:five_prime_utr;Parent=MsG0380015496.01.T01
Chr3 CDS 70993228 70993269 70993228 ID=MsG0380015496.01.T01:cds;Parent=MsG0380015496.01.T01
Chr3 CDS 70994192 70994845 70994192 ID=MsG0380015496.01.T01:cds;Parent=MsG0380015496.01.T01
Chr3 three_prime_UTR 70994846 70995276 70994846 ID=MsG0380015496.01.T01:three_prime_utr;Parent=MsG0380015496.01.T01
Gene Sequence

>MsG0380015496.01.T01

ATGGCTATATCTCTAAACCCCATCATCAGCTTCACCTCAACGAAGTTGGAAACAAACTATCACGATGCATCTAGGTATTCTGCCGGAGCTTCTTTCCCGAAGGCCACTCAGAGCACACTCGTTTCGATAACGTCGGGAACAAGAATGTTTGTCAAGGAGAAAAGATTTGGTCACCGTTTTTCAGTTGCAAATAGTGATCAACTTTCAACAGATGCTAGTAATAAGGATACTGGCAGGGCTGCAGATTCATCTGCCAATGATCAGTTAACATCTACCAATCCTGCTCAGGCAGAATCACAGACACCAGAGGTTTCCAATGGATCTGCAGCATCTCCTAAGTCGCAACCTGTAACCACACGATCATCTCAGAAAGTGAGAGAGAGGATAAGGGCGGCTCGAGTTCTTAACCAGTCCAAGGAACCAAAAACAGCTAAATCAGAAATGGGAAGTAGTGTGTTGGCTGCTTTTAAAGAAAGTGACAGAGGGAAAAAGAGGAGAAGATCCGGACTTCCAGAAGCCCCTGGTAATTTGTTTGATGACAGCAAACGAGGGATGCCAAAGGAAGGTTGGACTTTTGATTTTCCTGGTGGTTCTGATCTCTTTCTGATTATATTTTCTTTTGTCTTTATCAGCACAGTGATGTTTGGAACAACTTACATTGTGTGGAAAGTTGGTGCAATCCATTTTAATGACTAA

Protein sequence

>MsG0380015496.01.T01

MAISLNPIISFTSTKLETNYHDASRYSAGASFPKATQSTLVSITSGTRMFVKEKRFGHRFSVANSDQLSTDASNKDTGRAADSSANDQLTSTNPAQAESQTPEVSNGSAASPKSQPVTTRSSQKVRERIRAARVLNQSKEPKTAKSEMGSSVLAAFKESDRGKKRRRSGLPEAPGNLFDDSKRGMPKEGWTFDFPGGSDLFLIIFSFVFISTVMFGTTYIVWKVGAIHFND*