AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000080.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000080.01.T01 MTR_7g015420 34.656 378 187 10 657 1022 809 1138 1.98e-47 185
MsG0180000080.01.T01 MTR_6g059420 27.197 239 151 8 46 266 1 234 2.65e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 139 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTCAGTTTGGATTATT+TGG 0.060926 1:+1213039 None:intergenic
AATCACTATCTAGCTGTATT+TGG 0.135219 1:+1213426 None:intergenic
GTTTCCTTTACTCAAAATTT+TGG 0.161223 1:+1212511 None:intergenic
ATTGGGATATTTGACTCTTT+TGG 0.176459 1:+1210174 None:intergenic
GAGTAAAATTACCAAATTTC+AGG 0.195192 1:-1209246 MsG0180000080.01.T01:CDS
GCAGTAATTACCCTGAAATT+TGG 0.196187 1:+1209235 None:intergenic
TACTTCTATCCCGTTGTTGC+TGG 0.222323 1:+1209639 None:intergenic
TTCTTCTTCTTCGACTTTAT+CGG 0.234574 1:+1210071 None:intergenic
GAATTTCTATCCTTAGAAAT+TGG 0.236992 1:-1212971 MsG0180000080.01.T01:CDS
CATAACTCATAGGAATTCTT+TGG 0.249955 1:+1213549 None:intergenic
TTCTTAAATTTCTTTCTTCT+AGG 0.256554 1:+1212825 None:intergenic
AGATTCAGGTTCTTCCTTAA+TGG 0.262360 1:+1213742 None:intergenic
TACGATACTCTCATTAGATT+TGG 0.262791 1:-1209268 MsG0180000080.01.T01:CDS
GTTGAAGATTTCCATCCTTT+TGG 0.263264 1:+1210138 None:intergenic
TGAAAGGTATCTACCAAAAC+TGG 0.267449 1:-1209942 MsG0180000080.01.T01:CDS
GCGATTTCGCCTATATCTTT+TGG 0.270486 1:+1209493 None:intergenic
GTTCTTGCATCCAATTTCTA+AGG 0.272277 1:+1212961 None:intergenic
TATCTTTCATTCCTTGTTGA+TGG 0.272294 1:+1210884 None:intergenic
TTTATTATACCAACTTCTTA+TGG 0.275002 1:+1213457 None:intergenic
TCCATCATTTACACTATGTT+TGG 0.275943 1:+1213523 None:intergenic
AAAGAGGACCCTCTTATAAT+TGG 0.278798 1:-1213610 MsG0180000080.01.T01:CDS
TTTGGTTCTATTGACTCAAT+TGG 0.279131 1:+1210156 None:intergenic
AAAATAATTCGACAACCTTT+TGG 0.294442 1:+1213087 None:intergenic
GGAAAGGTTAAAGATACTTT+AGG 0.297444 1:-1212999 MsG0180000080.01.T01:CDS
CGATTTATCTCCACATGTTC+AGG 0.303515 1:-1211271 MsG0180000080.01.T01:CDS
TCTTCTAGATCTTTAGATTC+AGG 0.303572 1:+1213728 None:intergenic
ACTTTGTGGTTTCCCAGTTT+TGG 0.319312 1:+1209929 None:intergenic
TAGCTTGAGAAAATTCTCTA+TGG 0.333849 1:+1213576 None:intergenic
AAATTCAGTTTGGATTATTT+GGG 0.338129 1:+1213040 None:intergenic
CTGCACTGTTAAATTCAGTT+TGG 0.338938 1:+1213030 None:intergenic
CGGCAGCACTCCTGTTGGAT+TGG 0.347690 1:+1209088 None:intergenic
TGCAGAAAACATTCTGGTCT+TGG 0.357127 1:+1209307 None:intergenic
TAAAATAGAACAATTAGAAA+TGG 0.358170 1:-1213651 MsG0180000080.01.T01:CDS
AAGCTGCCTTTGCTTCTTCA+AGG 0.360635 1:+1209863 None:intergenic
TTTCGGTCTTTCAATTCATC+AGG 0.368132 1:+1211231 None:intergenic
ACATTTCTTCCATCATTTGT+TGG 0.374903 1:+1209334 None:intergenic
GCCATTTGTATGTAACTTTG+TGG 0.376569 1:+1209915 None:intergenic
CCATCATTTACACTATGTTT+GGG 0.377296 1:+1213524 None:intergenic
GCCAATCTTGATTAAGTGTC+TGG 0.377449 1:+1209375 None:intergenic
TTCAGTATCGCTTTACCATT+AGG 0.378679 1:+1210943 None:intergenic
AAGAAAATGTAGAAAATTAG+TGG 0.379355 1:-1208958 None:intergenic
CAACAAGGAATGAAAGATAC+TGG 0.383949 1:-1210880 MsG0180000080.01.T01:CDS
ACTAACTCTTTGCTTACGCC+TGG 0.386034 1:+1209601 None:intergenic
GATAGAATCCAAGGTAGAAT+TGG 0.387295 1:-1212888 MsG0180000080.01.T01:CDS
ATTTGATGCAGAAAACATTC+TGG 0.395086 1:+1209301 None:intergenic
GGCAGCACTCCTGTTGGATT+GGG 0.395123 1:+1209089 None:intergenic
TTCTGTTGGATTGTATAAGC+TGG 0.396028 1:+1211032 None:intergenic
TTTAACAGTGCAGTATCTTC+AGG 0.396899 1:-1213020 MsG0180000080.01.T01:CDS
AATCAGATTCAGATTCTGAT+TGG 0.399740 1:-1212584 MsG0180000080.01.T01:CDS
TTCTGTATTCCAATTATAAG+AGG 0.402053 1:+1213601 None:intergenic
GAACTTCTTCCAAAAGATAT+AGG 0.403358 1:-1209502 MsG0180000080.01.T01:CDS
ATACTGAATCTCGATGATTC+AGG 0.409471 1:-1210928 MsG0180000080.01.T01:CDS
TTCTAGTCTATAGTGATTCA+AGG 0.411181 1:-1209201 MsG0180000080.01.T01:CDS
TCTGCAGTTTGTTCCTCGTC+AGG 0.412696 1:+1213320 None:intergenic
TTGAATTATATTGCCAATGA+AGG 0.413188 1:-1211183 MsG0180000080.01.T01:CDS
TTGACTTGTTTGTTGATCAA+TGG 0.416478 1:+1210023 None:intergenic
GATCTGCTAGGTCAAGATTC+TGG 0.420897 1:-1210228 MsG0180000080.01.T01:CDS
TTGGTTCTATTGACTCAATT+GGG 0.424911 1:+1210157 None:intergenic
TCAATTCATCAGGGAAAGCT+TGG 0.427426 1:+1211241 None:intergenic
AGTAAAATTACCAAATTTCA+GGG 0.432065 1:-1209245 MsG0180000080.01.T01:CDS
ATCTTTCATTCCTTGTTGAT+GGG 0.432512 1:+1210885 None:intergenic
TCTTAAATTTCTTTCTTCTA+GGG 0.438843 1:+1212826 None:intergenic
TTAAACATGATCTATAGAAT+AGG 0.445975 1:-1212621 MsG0180000080.01.T01:CDS
CATTCATATCCAACAAATGA+TGG 0.446131 1:-1209343 MsG0180000080.01.T01:CDS
TATGTAACAAGGATTACATA+TGG 0.448515 1:+1213172 None:intergenic
GCCAGACACTTAATCAAGAT+TGG 0.450355 1:-1209376 MsG0180000080.01.T01:CDS
TGATTAATAAAGTCTTTGAA+TGG 0.451324 1:-1213283 MsG0180000080.01.T01:CDS
CAAAAGATTGATAGTCAACT+TGG 0.452577 1:-1210003 MsG0180000080.01.T01:CDS
TCTGTAGATAGAATTATCTA+TGG 0.455797 1:-1209763 MsG0180000080.01.T01:CDS
TGCTGGTTATGTCATGAAAC+AGG 0.456188 1:-1212696 MsG0180000080.01.T01:CDS
TAGTGGGCTTGAAGCAGACT+TGG 0.456753 1:-1209125 MsG0180000080.01.T01:CDS
CAAGGTAGAATTGGAGCATA+TGG 0.457798 1:-1212879 MsG0180000080.01.T01:CDS
AAATCTGCAAGGACAGTTGT+TGG 0.459606 1:+1210111 None:intergenic
ACCACAAAGTTACATACAAA+TGG 0.460165 1:-1209916 MsG0180000080.01.T01:CDS
AAGTTTGAAGAAAACTTTAG+TGG 0.461123 1:-1209142 MsG0180000080.01.T01:CDS
GTTGGATTGGGTCGGGTAGA+CGG 0.463813 1:+1209101 None:intergenic
TTTGTTAAAGAAGTCACCAT+TGG 0.466444 1:-1209730 MsG0180000080.01.T01:CDS
AAAATAGAACAATTAGAAAT+GGG 0.466764 1:-1213650 MsG0180000080.01.T01:CDS
CACTCCTGTTGGATTGGGTC+GGG 0.468177 1:+1209094 None:intergenic
ACTTCTATCCCGTTGTTGCT+GGG 0.468477 1:+1209640 None:intergenic
AGAAACTCTTCTTTCTGAAG+AGG 0.471501 1:-1210340 MsG0180000080.01.T01:CDS
CAGATGCATTGACAAGAGAA+TGG 0.472153 1:-1210436 MsG0180000080.01.T01:CDS
AGCTGCCTTTGCTTCTTCAA+GGG 0.473579 1:+1209864 None:intergenic
AGCTTACAACGCTGTTTACA+AGG 0.475751 1:-1209845 MsG0180000080.01.T01:CDS
AATCTGCAAGGACAGTTGTT+GGG 0.476787 1:+1210112 None:intergenic
GTCAGATCATTCTATGATTG+TGG 0.478585 1:-1209580 MsG0180000080.01.T01:CDS
ATCAGATTCAGATTCTGATT+GGG 0.485677 1:-1212583 MsG0180000080.01.T01:CDS
TGTTTGGGAACATAACTCAT+AGG 0.490756 1:+1213539 None:intergenic
CCCAAACATAGTGTAAATGA+TGG 0.495071 1:-1213524 MsG0180000080.01.T01:CDS
GAAACTCTTCTTTCTGAAGA+GGG 0.496733 1:-1210339 MsG0180000080.01.T01:CDS
GAATCTGAATCTGATTCTAC+TGG 0.497480 1:+1212591 None:intergenic
TCTACCCGACCCAATCCAAC+AGG 0.498593 1:-1209098 MsG0180000080.01.T01:CDS
GCACTCCTGTTGGATTGGGT+CGG 0.499875 1:+1209093 None:intergenic
TCTGTTGGATTGTATAAGCT+GGG 0.501680 1:+1211033 None:intergenic
CATATGCTCCAATTCTACCT+TGG 0.508912 1:+1212880 None:intergenic
CTAACTCTTTGCTTACGCCT+GGG 0.512622 1:+1209602 None:intergenic
CATAGTGTAAATGATGGAAG+TGG 0.519664 1:-1213518 MsG0180000080.01.T01:CDS
CTGAGAAAGTTCCATGGTCA+TGG 0.521543 1:-1211110 MsG0180000080.01.T01:CDS
TGTATGAGAGCTCTACCTAA+TGG 0.523123 1:-1210958 MsG0180000080.01.T01:CDS
TTCAAGGAAACAAGCAAAAG+AGG 0.531119 1:-1209185 MsG0180000080.01.T01:CDS
TAGCTCAAGCCATAAGAAGT+TGG 0.533778 1:-1213466 MsG0180000080.01.T01:CDS
ATTGAGTCAATAGAACCAAA+AGG 0.537061 1:-1210153 MsG0180000080.01.T01:CDS
GAATTCTCTCAGGCAAAAGC+AGG 0.538301 1:-1210391 MsG0180000080.01.T01:CDS
AGTGGGCTTGAAGCAGACTT+GGG 0.544386 1:-1209124 MsG0180000080.01.T01:CDS
ATTATTTGGGACATTGCCAT+AGG 0.546022 1:+1213053 None:intergenic
AGACATTACAGAATTCTCTC+AGG 0.548576 1:-1210401 MsG0180000080.01.T01:CDS
ATGTATCTTCAAGAAGATGC+AGG 0.554490 1:-1209544 MsG0180000080.01.T01:CDS
AGTTTGAAGAAAACTTTAGT+GGG 0.558680 1:-1209141 MsG0180000080.01.T01:CDS
AACTCTTCTTTCTGAAGAGG+GGG 0.562354 1:-1210337 MsG0180000080.01.T01:CDS
AAGATTGATAGTCAACTTGG+AGG 0.562508 1:-1210000 MsG0180000080.01.T01:CDS
CAGTGCAGTATCTTCAGGAA+AGG 0.567036 1:-1213015 MsG0180000080.01.T01:CDS
GCTGATAAAACAACCTGGGC+AGG 0.567068 1:-1210982 MsG0180000080.01.T01:CDS
ACTGAAAACTGGGATCTGCT+AGG 0.568544 1:-1210240 MsG0180000080.01.T01:CDS
AGCTCTCATACAACCTGCCC+AGG 0.571879 1:+1210969 None:intergenic
GTAAAAGCTGTAACAGTCCC+AGG 0.575657 1:-1209619 MsG0180000080.01.T01:CDS
CAAACTGCAGAAAATAGTAT+CGG 0.576329 1:-1213308 MsG0180000080.01.T01:CDS
TTGTGCTGTGATAGAATCCA+AGG 0.581034 1:-1212897 MsG0180000080.01.T01:CDS
TTCGGTCTTTCAATTCATCA+GGG 0.583186 1:+1211232 None:intergenic
AGTCAATAGAACCAAAAGGA+TGG 0.585856 1:-1210149 MsG0180000080.01.T01:CDS
ACTTCATCGTCTTCGAACCA+TGG 0.587820 1:+1209406 None:intergenic
TTCAATACTAGCTTCGCGAA+AGG 0.591563 1:-1209463 MsG0180000080.01.T01:CDS
TCTGTATTCCAATTATAAGA+GGG 0.595899 1:+1213602 None:intergenic
GTTTAAAGGATGGCAAGATA+CGG 0.597363 1:-1213249 MsG0180000080.01.T01:CDS
TGAGACCCTTGAAGAAGCAA+AGG 0.609616 1:-1209869 MsG0180000080.01.T01:CDS
AGACACTAGAGAAAACCAAA+AGG 0.610390 1:-1213102 MsG0180000080.01.T01:CDS
GAAAGGTATCTACCAAAACT+GGG 0.613427 1:-1209941 MsG0180000080.01.T01:CDS
AAACTCTTCTTTCTGAAGAG+GGG 0.613562 1:-1210338 MsG0180000080.01.T01:CDS
TTGATGCTGATAAAACAACC+TGG 0.621338 1:-1210987 MsG0180000080.01.T01:CDS
AGTGTCGGCAGCACTCCTGT+TGG 0.622979 1:+1209083 None:intergenic
ACAAAGGACACCAATGCAAG+TGG 0.634278 1:-1209051 MsG0180000080.01.T01:CDS
GAACATGTGGAGATAAATCG+AGG 0.637791 1:+1211274 None:intergenic
TCTTGTTCAGTCCATGACCA+TGG 0.640314 1:+1211099 None:intergenic
AGATATCTGAGAAAGTTCCA+TGG 0.642488 1:-1211116 MsG0180000080.01.T01:CDS
AACATGTGGAGATAAATCGA+GGG 0.664334 1:+1211275 None:intergenic
TGATGCTGATAAAACAACCT+GGG 0.665277 1:-1210986 MsG0180000080.01.T01:CDS
GATGATGTAACCCATCAACA+AGG 0.679569 1:-1210895 MsG0180000080.01.T01:CDS
TTTAGCTGAGAAACCTGACG+AGG 0.692058 1:-1213333 MsG0180000080.01.T01:CDS
GATGATGATTCAAAAGACGA+CGG 0.705876 1:-1213683 MsG0180000080.01.T01:CDS
TGCAAAAGACATAAATAACG+TGG 0.724731 1:-1209026 MsG0180000080.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATTAAAAGAAAAATTA+AGG - Chr1:1211673-1211692 MsG0180000080.01.T01:intron 10.0%
!!! GATTTTATATATTCAATATA+TGG + Chr1:1212261-1212280 None:intergenic 10.0%
!!! TATATTTTGCAAAAAATAAA+AGG - Chr1:1211060-1211079 MsG0180000080.01.T01:CDS 10.0%
!! AAAATAGAACAATTAGAAAT+GGG - Chr1:1209084-1209103 MsG0180000080.01.T01:CDS 15.0%
!! AAGATAAATAGAATTTCAAA+AGG - Chr1:1210858-1210877 MsG0180000080.01.T01:intron 15.0%
!! TAAAATAGAACAATTAGAAA+TGG - Chr1:1209083-1209102 MsG0180000080.01.T01:CDS 15.0%
!!! AAAATCTTTGAATTTGTTTT+CGG + Chr1:1211523-1211542 None:intergenic 15.0%
!!! AAACAAATTCAAAGATTTTT+AGG - Chr1:1211524-1211543 MsG0180000080.01.T01:intron 15.0%
!!! AGATAATTAAAAATCTGTTT+TGG + Chr1:1209348-1209367 None:intergenic 15.0%
!!! ATATAATTTTCTATGTAACA+AGG + Chr1:1209576-1209595 None:intergenic 15.0%
!!! ATGAAGTTTTATTTTGATAA+AGG + Chr1:1210259-1210278 None:intergenic 15.0%
!!! ATTAAAAAATCATTTTCTGT+TGG + Chr1:1211719-1211738 None:intergenic 15.0%
!!! GATATTTTAGTTTTTACAAA+AGG - Chr1:1211297-1211316 MsG0180000080.01.T01:intron 15.0%
!!! TTAAAACTATTTCTTTACTT+TGG - Chr1:1210549-1210568 MsG0180000080.01.T01:intron 15.0%
!! AAAAAATAAAAGGATGTGAT+TGG - Chr1:1211070-1211089 MsG0180000080.01.T01:CDS 20.0%
!! AAAAAGGAAATTGAGTATTT+AGG - Chr1:1211413-1211432 MsG0180000080.01.T01:intron 20.0%
!! AAACGAAACATATCAAAAAT+TGG - Chr1:1210330-1210349 MsG0180000080.01.T01:CDS 20.0%
!! AAAGATTCTATAGAAAAAAG+AGG - Chr1:1209964-1209983 MsG0180000080.01.T01:CDS 20.0%
!! AAATTCAGTTTGGATTATTT+GGG + Chr1:1209697-1209716 None:intergenic 20.0%
!! AACGAAACATATCAAAAATT+GGG - Chr1:1210331-1210350 MsG0180000080.01.T01:CDS 20.0%
!! AAGATTCTATAGAAAAAAGA+GGG - Chr1:1209965-1209984 MsG0180000080.01.T01:CDS 20.0%
!! AATCACAATGAAATAAAAAG+AGG - Chr1:1210958-1210977 MsG0180000080.01.T01:CDS 20.0%
!! AGTAAAATTACCAAATTTCA+GGG - Chr1:1213489-1213508 MsG0180000080.01.T01:CDS 20.0%
!! ATAAATCTTTGGTATATAGA+TGG + Chr1:1211228-1211247 None:intergenic 20.0%
!! ATAAGTCAAAACATCAAATA+TGG - Chr1:1210390-1210409 MsG0180000080.01.T01:CDS 20.0%
!! ATCTATATACCAAAGATTTA+TGG - Chr1:1211227-1211246 MsG0180000080.01.T01:CDS 20.0%
!! ATCTGTTCTTAATAAAAATC+TGG + Chr1:1212142-1212161 None:intergenic 20.0%
!! CAAAATAAAACTTCATAAGA+AGG - Chr1:1210263-1210282 MsG0180000080.01.T01:CDS 20.0%
!! TAAATTCAGTTTGGATTATT+TGG + Chr1:1209698-1209717 None:intergenic 20.0%
!! TATTTATCTTGAACTGAATA+AGG + Chr1:1210848-1210867 None:intergenic 20.0%
!! TCTTAAATTTCTTTCTTCTA+GGG + Chr1:1209911-1209930 None:intergenic 20.0%
!! TGATTAATAAAGTCTTTGAA+TGG - Chr1:1209451-1209470 MsG0180000080.01.T01:CDS 20.0%
!! TTAAACAGAATTTCAGAAAA+AGG - Chr1:1211357-1211376 MsG0180000080.01.T01:intron 20.0%
!! TTAAACATGATCTATAGAAT+AGG - Chr1:1210113-1210132 MsG0180000080.01.T01:CDS 20.0%
!! TTACTTTGTAAATATGTTTC+AGG - Chr1:1212018-1212037 MsG0180000080.01.T01:intron 20.0%
!! TTCTTAAATTTCTTTCTTCT+AGG + Chr1:1209912-1209931 None:intergenic 20.0%
!! TTTACATTAATCTCCTTATT+AGG + Chr1:1210815-1210834 None:intergenic 20.0%
!! TTTATTATACCAACTTCTTA+TGG + Chr1:1209280-1209299 None:intergenic 20.0%
!!! AAAACCAAAATTTTGAGTAA+AGG - Chr1:1210219-1210238 MsG0180000080.01.T01:CDS 20.0%
!!! AAATACTCTTTAGGTTTATA+AGG + Chr1:1210664-1210683 None:intergenic 20.0%
!!! AATGTTTCTAATTCATGAAT+TGG + Chr1:1212072-1212091 None:intergenic 20.0%
!!! ATAACTTTTGTCTTTTCTTT+GGG + Chr1:1210590-1210609 None:intergenic 20.0%
!!! ATTTTACCAAAAATTACCTA+TGG - Chr1:1209665-1209684 MsG0180000080.01.T01:CDS 20.0%
!!! ATTTTTGAAAAATCCTTCAT+TGG + Chr1:1211567-1211586 None:intergenic 20.0%
!!! CATTATTCTCCATAATTTTT+CGG + Chr1:1209535-1209554 None:intergenic 20.0%
!!! GTGTTAAAGTTTTAACAAAA+TGG - Chr1:1212097-1212116 MsG0180000080.01.T01:intron 20.0%
!!! TAAAGTTTTCTTCAAACTTT+AGG + Chr1:1213591-1213610 None:intergenic 20.0%
!!! TAAATACTCAATTTCCTTTT+TGG + Chr1:1211414-1211433 None:intergenic 20.0%
!!! TATAAACCTAAAGAGTATTT+GGG - Chr1:1210664-1210683 MsG0180000080.01.T01:intron 20.0%
!!! TATAACTTTTGTCTTTTCTT+TGG + Chr1:1210591-1210610 None:intergenic 20.0%
!!! TGAAGGATTTTTCAAAAATT+TGG - Chr1:1211568-1211587 MsG0180000080.01.T01:intron 20.0%
!!! TTATAAACCTAAAGAGTATT+TGG - Chr1:1210663-1210682 MsG0180000080.01.T01:intron 20.0%
!!! TTTTAAATGAGTTTAAAGGA+TGG - Chr1:1209475-1209494 MsG0180000080.01.T01:CDS 20.0%
!!! TTTTCTTTAGAAACTTTCTT+TGG + Chr1:1210083-1210102 None:intergenic 20.0%
! AAAAATAAAACCTGTCCTAA+AGG - Chr1:1209999-1210018 MsG0180000080.01.T01:CDS 25.0%
! AAGTGAAAAAGAATCCATTA+AGG - Chr1:1208978-1208997 MsG0180000080.01.T01:CDS 25.0%
! AAGTTTGAAGAAAACTTTAG+TGG - Chr1:1213592-1213611 MsG0180000080.01.T01:CDS 25.0%
! AATCCAAAAATACTGAAAAC+TGG - Chr1:1212483-1212502 MsG0180000080.01.T01:intron 25.0%
! AGATTTACCAAAAACATCTT+GGG - Chr1:1212640-1212659 MsG0180000080.01.T01:CDS 25.0%
! AGGATTAGAACATATATGTT+TGG - Chr1:1211263-1211282 MsG0180000080.01.T01:CDS 25.0%
! AGTTTGAAGAAAACTTTAGT+GGG - Chr1:1213593-1213612 MsG0180000080.01.T01:CDS 25.0%
! ATCAAAAATTGGGAAAGATT+AGG - Chr1:1210341-1210360 MsG0180000080.01.T01:CDS 25.0%
! ATCCAAAAATACTGAAAACT+GGG - Chr1:1212484-1212503 MsG0180000080.01.T01:intron 25.0%
! CGAAGAAAATGTAGAAAATT+AGG - Chr1:1213774-1213793 MsG0180000080.01.T01:CDS 25.0%
! GAAGAAGAAGAAAGAAAAAA+TGG - Chr1:1212674-1212693 MsG0180000080.01.T01:CDS 25.0%
! GAATTTCTATCCTTAGAAAT+TGG - Chr1:1209763-1209782 MsG0180000080.01.T01:CDS 25.0%
! GAGTAAAATTACCAAATTTC+AGG - Chr1:1213488-1213507 MsG0180000080.01.T01:CDS 25.0%
! GATATCTCAATTACTATAGA+AGG - Chr1:1210425-1210444 MsG0180000080.01.T01:CDS 25.0%
! GTTCTTAATAAAAATCTGGT+TGG + Chr1:1212138-1212157 None:intergenic 25.0%
! TATGTAACAAGGATTACATA+TGG + Chr1:1209565-1209584 None:intergenic 25.0%
! TATTCAATATATGGGTGAAA+CGG + Chr1:1212252-1212271 None:intergenic 25.0%
! TCAGGATTAGATTTAATCAT+TGG - Chr1:1210485-1210504 MsG0180000080.01.T01:intron 25.0%
! TCTGTAGATAGAATTATCTA+TGG - Chr1:1212971-1212990 MsG0180000080.01.T01:CDS 25.0%
! TCTGTATTCCAATTATAAGA+GGG + Chr1:1209135-1209154 None:intergenic 25.0%
! TTAAATCTAATCCTGAATCA+TGG + Chr1:1210481-1210500 None:intergenic 25.0%
! TTCTGTATTCCAATTATAAG+AGG + Chr1:1209136-1209155 None:intergenic 25.0%
! TTCTTATAAATTACCACGAA+AGG - Chr1:1211035-1211054 MsG0180000080.01.T01:CDS 25.0%
! TTGAATTATATTGCCAATGA+AGG - Chr1:1211551-1211570 MsG0180000080.01.T01:intron 25.0%
!! AAAATAATTCGACAACCTTT+TGG + Chr1:1209650-1209669 None:intergenic 25.0%
!! ATCTGCAACAATTATTTCTT+TGG + Chr1:1210372-1210391 None:intergenic 25.0%
!! ATGAATTGGATATCTTGTTT+CGG + Chr1:1212058-1212077 None:intergenic 25.0%
!! CTTTTAATGCCGAAAAATTA+TGG - Chr1:1209523-1209542 MsG0180000080.01.T01:CDS 25.0%
!! GTTTCCTTTACTCAAAATTT+TGG + Chr1:1210226-1210245 None:intergenic 25.0%
!! TAACTTTTGTCTTTTCTTTG+GGG + Chr1:1210589-1210608 None:intergenic 25.0%
!! TCTGCAACAATTATTTCTTT+GGG + Chr1:1210371-1210390 None:intergenic 25.0%
!! TGGCTTTTAAATGAGTTTAA+AGG - Chr1:1209471-1209490 MsG0180000080.01.T01:CDS 25.0%
!!! AGTTTTAACAAAATGGCAAA+TGG - Chr1:1212104-1212123 MsG0180000080.01.T01:intron 25.0%
!!! ATTTTAGCCTATTTAGATAC+AGG - Chr1:1210288-1210307 MsG0180000080.01.T01:CDS 25.0%
!!! CTCTTTTTGATTGTTTCTTT+AGG + Chr1:1209803-1209822 None:intergenic 25.0%
!!! CTTTGTATTTTTGAAAGTGT+CGG + Chr1:1213669-1213688 None:intergenic 25.0%
!!! CTTTTTTGCATAGTTTTTCA+AGG + Chr1:1212445-1212464 None:intergenic 25.0%
!!! GTTTTAACATTTTGCACAAA+CGG + Chr1:1210536-1210555 None:intergenic 25.0%
!!! TGCCATTTTCTCTAAAAATA+AGG + Chr1:1211439-1211458 None:intergenic 25.0%
AAAAAGAGGAAAAGCTAGAA+TGG - Chr1:1210972-1210991 MsG0180000080.01.T01:CDS 30.0%
AAACTCAATGATGCTACAAT+TGG - Chr1:1211009-1211028 MsG0180000080.01.T01:CDS 30.0%
AATATGGAAGACTTGTAAGA+TGG - Chr1:1212211-1212230 MsG0180000080.01.T01:intron 30.0%
AATCACTATCTAGCTGTATT+TGG + Chr1:1209311-1209330 None:intergenic 30.0%
AATCAGATTCAGATTCTGAT+TGG - Chr1:1210150-1210169 MsG0180000080.01.T01:CDS 30.0%
ACAATTTATCTCCATGATTC+AGG - Chr1:1210467-1210486 MsG0180000080.01.T01:intron 30.0%
ACAGATTCCAAATATGTAAC+TGG - Chr1:1212156-1212175 MsG0180000080.01.T01:intron 30.0%
ACATTTCTTCCATCATTTGT+TGG + Chr1:1213403-1213422 None:intergenic 30.0%
ACCACAAAGTTACATACAAA+TGG - Chr1:1212818-1212837 MsG0180000080.01.T01:CDS 30.0%
ATCAGATTCAGATTCTGATT+GGG - Chr1:1210151-1210170 MsG0180000080.01.T01:CDS 30.0%
ATCTTTCATTCCTTGTTGAT+GGG + Chr1:1211852-1211871 None:intergenic 30.0%
ATTGAGTCAATAGAACCAAA+AGG - Chr1:1212581-1212600 MsG0180000080.01.T01:CDS 30.0%
ATTTGATGCAGAAAACATTC+TGG + Chr1:1213436-1213455 None:intergenic 30.0%
CAAACTGCAGAAAATAGTAT+CGG - Chr1:1209426-1209445 MsG0180000080.01.T01:CDS 30.0%
CAAATTACGAGATCCTAATA+AGG - Chr1:1210799-1210818 MsG0180000080.01.T01:intron 30.0%
CAGATTTACCAAAAACATCT+TGG - Chr1:1212639-1212658 MsG0180000080.01.T01:CDS 30.0%
CATAACTCATAGGAATTCTT+TGG + Chr1:1209188-1209207 None:intergenic 30.0%
CATATGGTTGTGAAAAAACT+AGG - Chr1:1209871-1209890 MsG0180000080.01.T01:CDS 30.0%
CATATTTATAATTGACGCGA+AGG + Chr1:1212197-1212216 None:intergenic 30.0%
CATTCATATCCAACAAATGA+TGG - Chr1:1213391-1213410 MsG0180000080.01.T01:CDS 30.0%
CCAAAATCCAGTTACATATT+TGG + Chr1:1212166-1212185 None:intergenic 30.0%
CCATCATTTACACTATGTTT+GGG + Chr1:1209213-1209232 None:intergenic 30.0%
CCTATGACAAAAAGAAACAT+AGG - Chr1:1209937-1209956 MsG0180000080.01.T01:CDS 30.0%
CGACACTTTCAAAAATACAA+AGG - Chr1:1213667-1213686 MsG0180000080.01.T01:CDS 30.0%
CTTCGCGTCAATTATAAATA+TGG - Chr1:1212195-1212214 MsG0180000080.01.T01:intron 30.0%
GAAATCACAATTAGCCAAAA+AGG - Chr1:1211397-1211416 MsG0180000080.01.T01:intron 30.0%
GAACTTCTTCCAAAAGATAT+AGG - Chr1:1213232-1213251 MsG0180000080.01.T01:CDS 30.0%
GAATCATGGAGATAAATTGT+TGG + Chr1:1210467-1210486 None:intergenic 30.0%
GAGCATTATCCATAAATCTT+TGG + Chr1:1211239-1211258 None:intergenic 30.0%
GGAAAGGTTAAAGATACTTT+AGG - Chr1:1209735-1209754 MsG0180000080.01.T01:CDS 30.0%
TACGATACTCTCATTAGATT+TGG - Chr1:1213466-1213485 MsG0180000080.01.T01:CDS 30.0%
TAGCTTGAGAAAATTCTCTA+TGG + Chr1:1209161-1209180 None:intergenic 30.0%
TATCTTTCATTCCTTGTTGA+TGG + Chr1:1211853-1211872 None:intergenic 30.0%
TCCATCATTTACACTATGTT+TGG + Chr1:1209214-1209233 None:intergenic 30.0%
TCTTCTAGATCTTTAGATTC+AGG + Chr1:1209009-1209028 None:intergenic 30.0%
TGCAAAAGACATAAATAACG+TGG - Chr1:1213708-1213727 MsG0180000080.01.T01:CDS 30.0%
TGCAAAATATAATCCTTTCG+TGG + Chr1:1211051-1211070 None:intergenic 30.0%
TTCTAGTCTATAGTGATTCA+AGG - Chr1:1213533-1213552 MsG0180000080.01.T01:CDS 30.0%
TTCTTCTTCTTCGACTTTAT+CGG + Chr1:1212666-1212685 None:intergenic 30.0%
TTTATGGATAATGCTCTTAG+AGG - Chr1:1211243-1211262 MsG0180000080.01.T01:CDS 30.0%
TTTGTTAAAGAAGTCACCAT+TGG - Chr1:1213004-1213023 MsG0180000080.01.T01:CDS 30.0%
! AAAGCTTATGTGATTTTCGA+TGG - Chr1:1212764-1212783 MsG0180000080.01.T01:CDS 30.0%
! ACATTGCCATAGGTAATTTT+TGG + Chr1:1209674-1209693 None:intergenic 30.0%
! AGAATGTTTTCTGCATCAAA+TGG - Chr1:1213435-1213454 MsG0180000080.01.T01:CDS 30.0%
! ATCCCAGTTTTCAGTATTTT+TGG + Chr1:1212489-1212508 None:intergenic 30.0%
! ATTGGGATATTTGACTCTTT+TGG + Chr1:1212563-1212582 None:intergenic 30.0%
! CAAAAGATTGATAGTCAACT+TGG - Chr1:1212731-1212750 MsG0180000080.01.T01:CDS 30.0%
! CCAAATATGTAACTGGATTT+TGG - Chr1:1212163-1212182 MsG0180000080.01.T01:intron 30.0%
! CCTATGTTTCTTTTTGTCAT+AGG + Chr1:1209940-1209959 None:intergenic 30.0%
! CTTTTACTTCAACTTATCCA+TGG - Chr1:1213311-1213330 MsG0180000080.01.T01:CDS 30.0%
! GTGATTTGTCACATAAAAAG+CGG + Chr1:1210944-1210963 None:intergenic 30.0%
! TATCTTTTGTGTAGAACAGA+AGG - Chr1:1209363-1209382 MsG0180000080.01.T01:CDS 30.0%
! TCATCTTTTGATGCAAAATC+AGG - Chr1:1211096-1211115 MsG0180000080.01.T01:CDS 30.0%
! TCTACATTTTCTTCGTTGTT+TGG + Chr1:1213769-1213788 None:intergenic 30.0%
! TGATTTGTCACATAAAAAGC+GGG + Chr1:1210943-1210962 None:intergenic 30.0%
! TTTTGATAAAGGTAGCACTA+GGG + Chr1:1210248-1210267 None:intergenic 30.0%
! TTTTGGTAGATACCTTTCAT+AGG + Chr1:1212791-1212810 None:intergenic 30.0%
!! ATTTTGATAAAGGTAGCACT+AGG + Chr1:1210249-1210268 None:intergenic 30.0%
!! GTGTTTTTCAGATTATCCAA+AGG + Chr1:1210758-1210777 None:intergenic 30.0%
!! TTGACTTGTTTGTTGATCAA+TGG + Chr1:1212714-1212733 None:intergenic 30.0%
!! TTGGTTCTATTGACTCAATT+GGG + Chr1:1212580-1212599 None:intergenic 30.0%
!! TTTGGTTCTATTGACTCAAT+TGG + Chr1:1212581-1212600 None:intergenic 30.0%
!! TTTTAACTCTTCTGAGTAGT+TGG + Chr1:1213059-1213078 None:intergenic 30.0%
!!! ATGTTTTTGGTAAATCTGCA+AGG + Chr1:1212637-1212656 None:intergenic 30.0%
!!! ATTTTGGTTTTGCTCATCTT+CGG + Chr1:1210210-1210229 None:intergenic 30.0%
!!! GGACAGGTTTTATTTTTTCT+AGG + Chr1:1209996-1210015 None:intergenic 30.0%
!!! GGCCTTATTTTTAGAGAAAA+TGG - Chr1:1211434-1211453 MsG0180000080.01.T01:intron 30.0%
!!! GTGCATGATTTTTTACCTTT+AGG + Chr1:1210017-1210036 None:intergenic 30.0%
!!! TGATTTTTTACCTTTAGGAC+AGG + Chr1:1210012-1210031 None:intergenic 30.0%
!!! TGCATAGTTTTTCAAGGTTT+TGG + Chr1:1212439-1212458 None:intergenic 30.0%
AAAGAGGACCCTCTTATAAT+TGG - Chr1:1209124-1209143 MsG0180000080.01.T01:CDS 35.0%
AACATGTGGAGATAAATCGA+GGG + Chr1:1211462-1211481 None:intergenic 35.0%
ACTACTACAAAAACTGGAGA+TGG - Chr1:1213029-1213048 MsG0180000080.01.T01:CDS 35.0%
AGACACTAGAGAAAACCAAA+AGG - Chr1:1209632-1209651 MsG0180000080.01.T01:CDS 35.0%
AGACATTACAGAATTCTCTC+AGG - Chr1:1212333-1212352 MsG0180000080.01.T01:intron 35.0%
AGATATCTGAGAAAGTTCCA+TGG - Chr1:1211618-1211637 MsG0180000080.01.T01:intron 35.0%
AGTCAATAGAACCAAAAGGA+TGG - Chr1:1212585-1212604 MsG0180000080.01.T01:CDS 35.0%
ATACTGAATCTCGATGATTC+AGG - Chr1:1211806-1211825 MsG0180000080.01.T01:intron 35.0%
ATGTATCTTCAAGAAGATGC+AGG - Chr1:1213190-1213209 MsG0180000080.01.T01:CDS 35.0%
CAACAAGGAATGAAAGATAC+TGG - Chr1:1211854-1211873 MsG0180000080.01.T01:intron 35.0%
CCCAAACATAGTGTAAATGA+TGG - Chr1:1209210-1209229 MsG0180000080.01.T01:CDS 35.0%
CTGCACTGTTAAATTCAGTT+TGG + Chr1:1209707-1209726 None:intergenic 35.0%
GAAAGCTCAAGAACAAAAAG+AGG - Chr1:1209108-1209127 MsG0180000080.01.T01:CDS 35.0%
GAATCTGAATCTGATTCTAC+TGG + Chr1:1210146-1210165 None:intergenic 35.0%
GATAGAATCCAAGGTAGAAT+TGG - Chr1:1209846-1209865 MsG0180000080.01.T01:CDS 35.0%
GATGATGATTCAAAAGACGA+CGG - Chr1:1209051-1209070 MsG0180000080.01.T01:CDS 35.0%
GCAGTAATTACCCTGAAATT+TGG + Chr1:1213502-1213521 None:intergenic 35.0%
GCCATTTGTATGTAACTTTG+TGG + Chr1:1212822-1212841 None:intergenic 35.0%
GGACATGAAAAAGCTGTTAA+AGG + Chr1:1211156-1211175 None:intergenic 35.0%
GGCAAAAATGTCAGATACAA+AGG - Chr1:1212839-1212858 MsG0180000080.01.T01:CDS 35.0%
GTAAAAAATCATGCACATGC+TGG - Chr1:1210021-1210040 MsG0180000080.01.T01:CDS 35.0%
GTCAGATCATTCTATGATTG+TGG - Chr1:1213154-1213173 MsG0180000080.01.T01:CDS 35.0%
GTTCTTGCATCCAATTTCTA+AGG + Chr1:1209776-1209795 None:intergenic 35.0%
GTTTAAAGGATGGCAAGATA+CGG - Chr1:1209485-1209504 MsG0180000080.01.T01:CDS 35.0%
TAGTAGCTCGAAAGAGAAAT+TGG - Chr1:1211898-1211917 MsG0180000080.01.T01:intron 35.0%
TATAGTCCAGCCATCAAAAA+TGG - Chr1:1212931-1212950 MsG0180000080.01.T01:CDS 35.0%
TATCCTCCCAAATACTCTTT+AGG + Chr1:1210673-1210692 None:intergenic 35.0%
TCTGTTGGATTGTATAAGCT+GGG + Chr1:1211704-1211723 None:intergenic 35.0%
TGATGCTGATAAAACAACCT+GGG - Chr1:1211748-1211767 MsG0180000080.01.T01:intron 35.0%
TGTATGTTCAGAAGATCCTT+TGG - Chr1:1210739-1210758 MsG0180000080.01.T01:intron 35.0%
TGTTTGGGAACATAACTCAT+AGG + Chr1:1209198-1209217 None:intergenic 35.0%
TTCAAGGAAACAAGCAAAAG+AGG - Chr1:1213549-1213568 MsG0180000080.01.T01:CDS 35.0%
TTCAGTATCGCTTTACCATT+AGG + Chr1:1211794-1211813 None:intergenic 35.0%
TTCGGTCTTTCAATTCATCA+GGG + Chr1:1211505-1211524 None:intergenic 35.0%
TTCTGTTGGATTGTATAAGC+TGG + Chr1:1211705-1211724 None:intergenic 35.0%
TTGATGCTGATAAAACAACC+TGG - Chr1:1211747-1211766 MsG0180000080.01.T01:intron 35.0%
TTGGAGACTACTACAAAAAC+TGG - Chr1:1213023-1213042 MsG0180000080.01.T01:CDS 35.0%
TTTAACAGTGCAGTATCTTC+AGG - Chr1:1209714-1209733 MsG0180000080.01.T01:CDS 35.0%
TTTCGGTCTTTCAATTCATC+AGG + Chr1:1211506-1211525 None:intergenic 35.0%
! AAACTCTTCTTTCTGAAGAG+GGG - Chr1:1212396-1212415 MsG0180000080.01.T01:intron 35.0%
! AAGATTGATAGTCAACTTGG+AGG - Chr1:1212734-1212753 MsG0180000080.01.T01:CDS 35.0%
! AGAAACTCTTCTTTCTGAAG+AGG - Chr1:1212394-1212413 MsG0180000080.01.T01:intron 35.0%
! AGATTCAGGTTCTTCCTTAA+TGG + Chr1:1208995-1209014 None:intergenic 35.0%
! ATTATTTGGGACATTGCCAT+AGG + Chr1:1209684-1209703 None:intergenic 35.0%
! ATTTTCGATGGACCTATGAA+AGG - Chr1:1212776-1212795 MsG0180000080.01.T01:CDS 35.0%
! CATAGTGTAAATGATGGAAG+TGG - Chr1:1209216-1209235 MsG0180000080.01.T01:CDS 35.0%
! GAAACTCTTCTTTCTGAAGA+GGG - Chr1:1212395-1212414 MsG0180000080.01.T01:intron 35.0%
! GTCGTCTTTTGAATCATCAT+CGG + Chr1:1209052-1209071 None:intergenic 35.0%
! GTTGAAGATTTCCATCCTTT+TGG + Chr1:1212599-1212618 None:intergenic 35.0%
! GTTTTTGTAGTAGTCTCCAA+TGG + Chr1:1213023-1213042 None:intergenic 35.0%
!! AAACCTAAAGAGTATTTGGG+AGG - Chr1:1210667-1210686 MsG0180000080.01.T01:intron 35.0%
!! GAAAGGTATCTACCAAAACT+GGG - Chr1:1212793-1212812 MsG0180000080.01.T01:CDS 35.0%
!! TGAAAGGTATCTACCAAAAC+TGG - Chr1:1212792-1212811 MsG0180000080.01.T01:CDS 35.0%
!! TGTTTTTATCCCAGCAACAA+CGG - Chr1:1213085-1213104 MsG0180000080.01.T01:CDS 35.0%
!! TTCCATTGGTAATGACTTTG+TGG + Chr1:1211177-1211196 None:intergenic 35.0%
!!! TTCTAGACGATTTTTTGCAG+AGG + Chr1:1212378-1212397 None:intergenic 35.0%
AAATCTGCAAGGACAGTTGT+TGG + Chr1:1212626-1212645 None:intergenic 40.0%
AATCTGCAAGGACAGTTGTT+GGG + Chr1:1212625-1212644 None:intergenic 40.0%
AGCTTACAACGCTGTTTACA+AGG - Chr1:1212889-1212908 MsG0180000080.01.T01:CDS 40.0%
CAAGGTAGAATTGGAGCATA+TGG - Chr1:1209855-1209874 MsG0180000080.01.T01:CDS 40.0%
CAATATATGGGTGAAACGGT+TGG + Chr1:1212248-1212267 None:intergenic 40.0%
CATATGCTCCAATTCTACCT+TGG + Chr1:1209857-1209876 None:intergenic 40.0%
CGATTTATCTCCACATGTTC+AGG - Chr1:1211463-1211482 MsG0180000080.01.T01:intron 40.0%
GAACATGTGGAGATAAATCG+AGG + Chr1:1211463-1211482 None:intergenic 40.0%
GATGATGTAACCCATCAACA+AGG - Chr1:1211839-1211858 MsG0180000080.01.T01:intron 40.0%
GCCAATCTTGATTAAGTGTC+TGG + Chr1:1213362-1213381 None:intergenic 40.0%
GCCAGACACTTAATCAAGAT+TGG - Chr1:1213358-1213377 MsG0180000080.01.T01:CDS 40.0%
GTCCACAAAGTCATTACCAA+TGG - Chr1:1211172-1211191 MsG0180000080.01.T01:CDS 40.0%
TAGCTCAAGCCATAAGAAGT+TGG - Chr1:1209268-1209287 MsG0180000080.01.T01:CDS 40.0%
TCAAAAAGAGACGCACGAAT+AGG - Chr1:1209813-1209832 MsG0180000080.01.T01:CDS 40.0%
TCAATTCATCAGGGAAAGCT+TGG + Chr1:1211496-1211515 None:intergenic 40.0%
TGCAGAAAACATTCTGGTCT+TGG + Chr1:1213430-1213449 None:intergenic 40.0%
TGTATGAGAGCTCTACCTAA+TGG - Chr1:1211776-1211795 MsG0180000080.01.T01:intron 40.0%
TGTTGCGCCTGTATCTAAAT+AGG + Chr1:1210298-1210317 None:intergenic 40.0%
TTGTGCTGTGATAGAATCCA+AGG - Chr1:1209837-1209856 MsG0180000080.01.T01:CDS 40.0%
! AACTCTTCTTTCTGAAGAGG+GGG - Chr1:1212397-1212416 MsG0180000080.01.T01:intron 40.0%
! ACAGGCGCAACATTATGTTT+TGG - Chr1:1210306-1210325 MsG0180000080.01.T01:CDS 40.0%
! ACTTTGTGGTTTCCCAGTTT+TGG + Chr1:1212808-1212827 None:intergenic 40.0%
! CAGATGCATTGACAAGAGAA+TGG - Chr1:1212298-1212317 MsG0180000080.01.T01:intron 40.0%
! GCGATTTCGCCTATATCTTT+TGG + Chr1:1213244-1213263 None:intergenic 40.0%
! GTTTTTATCCCAGCAACAAC+GGG - Chr1:1213086-1213105 MsG0180000080.01.T01:CDS 40.0%
! TGCTGGTTATGTCATGAAAC+AGG - Chr1:1210038-1210057 MsG0180000080.01.T01:CDS 40.0%
! TGGATCTTTTCCTGAACATG+TGG + Chr1:1211476-1211495 None:intergenic 40.0%
! TTATCGGCCCAAGATGTTTT+TGG + Chr1:1212650-1212669 None:intergenic 40.0%
! TTCAATACTAGCTTCGCGAA+AGG - Chr1:1213271-1213290 MsG0180000080.01.T01:CDS 40.0%
!! TAGTCTCCATTTTTGATGGC+TGG + Chr1:1212940-1212959 None:intergenic 40.0%
!!! CTTGTTTTAGTCCAAACGGA+AGG + Chr1:1211203-1211222 None:intergenic 40.0%
!!! GGTGCTTGTTTTAGTCCAAA+CGG + Chr1:1211207-1211226 None:intergenic 40.0%
AAGCTGCCTTTGCTTCTTCA+AGG + Chr1:1212874-1212893 None:intergenic 45.0%
ACAAAGGACACCAATGCAAG+TGG - Chr1:1213683-1213702 MsG0180000080.01.T01:CDS 45.0%
ACTAACTCTTTGCTTACGCC+TGG + Chr1:1213136-1213155 None:intergenic 45.0%
ACTGAAAACTGGGATCTGCT+AGG - Chr1:1212494-1212513 MsG0180000080.01.T01:intron 45.0%
ACTTCATCGTCTTCGAACCA+TGG + Chr1:1213331-1213350 None:intergenic 45.0%
ACTTCTATCCCGTTGTTGCT+GGG + Chr1:1213097-1213116 None:intergenic 45.0%
AGCTACTAGACTTAGCGTAC+TGG + Chr1:1211886-1211905 None:intergenic 45.0%
AGCTGCCTTTGCTTCTTCAA+GGG + Chr1:1212873-1212892 None:intergenic 45.0%
CAAACGGAAGGACATTCCAT+TGG + Chr1:1211191-1211210 None:intergenic 45.0%
CAATGGAATGTCCTTCCGTT+TGG - Chr1:1211189-1211208 MsG0180000080.01.T01:CDS 45.0%
CAGTGCAGTATCTTCAGGAA+AGG - Chr1:1209719-1209738 MsG0180000080.01.T01:CDS 45.0%
CTAACTCTTTGCTTACGCCT+GGG + Chr1:1213135-1213154 None:intergenic 45.0%
CTGAGAAAGTTCCATGGTCA+TGG - Chr1:1211624-1211643 MsG0180000080.01.T01:intron 45.0%
GAATTCTCTCAGGCAAAAGC+AGG - Chr1:1212343-1212362 MsG0180000080.01.T01:intron 45.0%
GATCTGCTAGGTCAAGATTC+TGG - Chr1:1212506-1212525 MsG0180000080.01.T01:intron 45.0%
GCTACTAGACTTAGCGTACT+GGG + Chr1:1211885-1211904 None:intergenic 45.0%
GTAAAAGCTGTAACAGTCCC+AGG - Chr1:1213115-1213134 MsG0180000080.01.T01:CDS 45.0%
TACTTCTATCCCGTTGTTGC+TGG + Chr1:1213098-1213117 None:intergenic 45.0%
TCTTGTTCAGTCCATGACCA+TGG + Chr1:1211638-1211657 None:intergenic 45.0%
TGAGACCCTTGAAGAAGCAA+AGG - Chr1:1212865-1212884 MsG0180000080.01.T01:CDS 45.0%
TTTAGCTGAGAAACCTGACG+AGG - Chr1:1209401-1209420 MsG0180000080.01.T01:CDS 45.0%
! CTTTTGCACACCACTTGCAT+TGG + Chr1:1213696-1213715 None:intergenic 45.0%
!! TAAAAAGCGGGTGCTGAATG+TGG + Chr1:1210931-1210950 None:intergenic 45.0%
!!! ATTTTATATATTCAATATAT+GGG + Chr1:1212260-1212279 None:intergenic 5.0%
GCTGAATGTGGACTTGCAGA+TGG + Chr1:1210919-1210938 None:intergenic 50.0%
GCTGATAAAACAACCTGGGC+AGG - Chr1:1211752-1211771 MsG0180000080.01.T01:intron 50.0%
! AGTGGGCTTGAAGCAGACTT+GGG - Chr1:1213610-1213629 MsG0180000080.01.T01:CDS 50.0%
! TCTGCAGTTTGTTCCTCGTC+AGG + Chr1:1209417-1209436 None:intergenic 50.0%
!! TAGTGGGCTTGAAGCAGACT+TGG - Chr1:1213609-1213628 MsG0180000080.01.T01:CDS 50.0%
AGCTCTCATACAACCTGCCC+AGG + Chr1:1211768-1211787 None:intergenic 55.0%
GGCAGCACTCCTGTTGGATT+GGG + Chr1:1213648-1213667 None:intergenic 55.0%
TCTACCCGACCCAATCCAAC+AGG - Chr1:1213636-1213655 MsG0180000080.01.T01:CDS 55.0%
! CACTCCTGTTGGATTGGGTC+GGG + Chr1:1213643-1213662 None:intergenic 55.0%
! GCACTCCTGTTGGATTGGGT+CGG + Chr1:1213644-1213663 None:intergenic 55.0%
! GTTGGATTGGGTCGGGTAGA+CGG + Chr1:1213636-1213655 None:intergenic 55.0%
CGGCAGCACTCCTGTTGGAT+TGG + Chr1:1213649-1213668 None:intergenic 60.0%
!! AGTGTCGGCAGCACTCCTGT+TGG + Chr1:1213654-1213673 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 1208961 1213795 1208961 ID=MsG0180000080.01;Name=MsG0180000080.01
Chr1 mRNA 1208961 1213795 1208961 ID=MsG0180000080.01.T01;Parent=MsG0180000080.01;Name=MsG0180000080.01.T01;_AED=0.83;_eAED=0.84;_QI=0|0|0|1|1|1|3|0|1068
Chr1 exon 1212522 1213795 1212522 ID=MsG0180000080.01.T01:exon:7413;Parent=MsG0180000080.01.T01
Chr1 exon 1210871 1211308 1210871 ID=MsG0180000080.01.T01:exon:7414;Parent=MsG0180000080.01.T01
Chr1 exon 1208961 1210455 1208961 ID=MsG0180000080.01.T01:exon:7415;Parent=MsG0180000080.01.T01
Chr1 CDS 1212522 1213795 1212522 ID=MsG0180000080.01.T01:cds;Parent=MsG0180000080.01.T01
Chr1 CDS 1210871 1211308 1210871 ID=MsG0180000080.01.T01:cds;Parent=MsG0180000080.01.T01
Chr1 CDS 1208961 1210455 1208961 ID=MsG0180000080.01.T01:cds;Parent=MsG0180000080.01.T01
Gene Sequence

>MsG0180000080.01.T01

ATGGCTACTTTAGACATAAGTGAAAAAGAATCCATTAAGGAAGAACCTGAATCTAAAGATCTAGAAGATATTATCTACGACTTTAGTTCCGATGATGATTCAAAAGACGACGGAAATTTCGTTAAAATAGAACAATTAGAAATGGGCGAAAGCTCAAGAACAAAAAGAGGACCCTCTTATAATTGGAATACAGAATTCCATAGAGAATTTTCTCAAGCTAAATTCCAAAGAATTCCTATGAGTTATGTTCCCAAACATAGTGTAAATGATGGAAGTGGAATTCTAAACATTGATTGTGTTGACAATCTAGCTCAAGCCATAAGAAGTTGGTATAATAAAAACATTATCCAAATACAGCTAGATAGTGATTTAAAAAATCTAACTCCAAAACAGATTTTTAATTATCTTTTGTGTAGAACAGAAGGTAATGCATATAAATTTTTAGCTGAGAAACCTGACGAGGAACAAACTGCAGAAAATAGTATCGGAATGATTAATAAAGTCTTTGAATGGCTTTTAAATGAGTTTAAAGGATGGCAAGATACGGTAGACTCAAATGTCGCTTTTAATGCCGAAAAATTATGGAGAATAATGAATCTATCCATATGTAATCCTTGTTACATAGAAAATTATATTTGTGAATTCTCACAATTATATTATGATCTAAACAAAGACACTAGAGAAAACCAAAAGGTTGTCGAATTATTTTACCAAAAATTACCTATGGCAATGTCCCAAATAATCCAAACTGAATTTAACAGTGCAGTATCTTCAGGAAAGGTTAAAGATACTTTAGGAGCTAGAATTTCTATCCTTAGAAATTGGATGCAAGAACAATGCCTAAAGAAACAATCAAAAAGAGACGCACGAATAGGATTGTGCTGTGATAGAATCCAAGGTAGAATTGGAGCATATGGTTGTGAAAAAACTAGGAGAAAAAGAAAATACCCTAGAAGAAAGAAATTTAAGAAATTTTCCTATGACAAAAAGAAACATAGGAAGAAAAGATTCTATAGAAAAAAGAGGGAGTATCCTAGAAAAAATAAAACCTGTCCTAAAGGTAAAAAATCATGCACATGCTGGTTATGTCATGAAACAGGACATTATGCGAATGAATGTCCAAAGAAAGTTTCTAAAGAAAAGAAACAAGTTTTAAACATGATCTATAGAATAGGTTATGAACCAGTAGAATCAGATTCAGATTCTGATTGGGAGCAACAAAGTTTCTATGAACTCTGCACAGATTCCGAAGATGAGCAAAACCAAAATTTTGAAGAAAATGGCACCCTCGATTTATCTCCACATGTTCAGGAAAAGATCCAAGCTTTCCCTGATGAATTGAAAGACCGAAAACAAATTCAAAGATTTTTAGGATGTTTGAATTATATTGCCAATGAAGGATTTTTCAAAAATTTGGCAACTGAAAGAAAGATTTTACAGAAAAAGATATCTGAGAAAGTTCCATGGTCATGGACTGAACAAGATACTCTAACTGTAAAAACTATTAAAAGAAAAATTAAGGTTTTACCCAGCTTATACAATCCAACAGAAAATGATTTTTTAATTGTTGAGATTGATGCTGATAAAACAACCTGGGCAGGTTGTATGAGAGCTCTACCTAATGGTAAAGCGATACTGAATCTCGATGATTCAGGAAACTATGTTGATGATGTAACCCATCAACAAGGAATGAAAGATACTGGAGCAACCCAATGCATTGACAAGAGAATGGAAGCAGCTATAAAGACATTACAGAATTCTCTCAGGCAAAAGCAGGAGCAAATTGCCTCTGCAAAAAATCGTCTAGAAACTCTTCTTTCTGAAGAGGGGGAGATGATATTAACAATCCAAAACCTTGAAAAACTATGCAAAAAAGAAACATCAATAGTTTCAGAATCCAAAAATACTGAAAACTGGGATCTGCTAGGTCAAGATTCTGGAAAATTCAACTACTATGTAAAATACTCAGCTCCAAAAGAGTCAAATATCCCAATTGAGTCAATAGAACCAAAAGGATGGAAATCTTCAACAAACCCAACAACTGTCCTTGCAGATTTACCAAAAACATCTTGGGCCGATAAAGTCGAAGAAGAAGAAAGAAAAAATGGAAAAGAAAAAGAATCCATTGATCAACAAACAAGTCAAAAGATTGATAGTCAACTTGGAGGCAAAAAGAAAGCTTATGTGATTTTCGATGGACCTATGAAAGGTATCTACCAAAACTGGGAAACCACAAAGTTACATACAAATGGCAAAAATGTCAGATACAAAGGCTATGAGACCCTTGAAGAAGCAAAGGCAGCTTACAACGCTGTTTACAAGGAAGTTACAATAGCAAGCAATATAGTCCAGCCATCAAAAATGGAGACTAAGAAGAAAATATCTGTAGATAGAATTATCTATGGAGAAAGCAAATTTGTTAAAGAAGTCACCATTGGAGACTACTACAAAAACTGGAGATGGTTAACCAACTACTCAGAAGAGTTAAAAACAGAATGTTTTTATCCCAGCAACAACGGGATAGAAGTAAAAGCTGTAACAGTCCCAGGCGTAAGCAAAGAGTTAGTCAGATCATTCTATGATTGTGGAATGATTAAAACAATGTATCTTCAAGAAGATGCAGGAAGAAAAATTCATGAACTAGAACTTCTTCCAAAAGATATAGGCGAAATCGCTTATAAATTCAATACTAGCTTCGCGAAAGGTAAAGAGTTCTTTTTATCTTTTACTTCAACTTATCCATGGTTCGAAGACGATGAAGTTATTAAAGCCAGACACTTAATCAAGATTGGCATTTCAAATCATTCATATCCAACAAATGATGGAAGAAATGTAGATCCAAGACCAGAATGTTTTCTGCATCAAATGGAAAAATTCTACGATACTCTCATTAGATTTGGAGTAAAATTACCAAATTTCAGGGTAATTACTGCAAAAGAAAGTTTTCTAGTCTATAGTGATTCAAGGAAACAAGCAAAAGAGGAGCATCTTCAGCAAATCCTAAAGTTTGAAGAAAACTTTAGTGGGCTTGAAGCAGACTTGGGCCGTCTACCCGACCCAATCCAACAGGAGTGCTGCCGACACTTTCAAAAATACAAAGGACACCAATGCAAGTGGTGTGCAAAAGACATAAATAACGTGGCAGACAAAGAATCGTTGTATGACAGTGACGTTTCACCAAACAACGAAGAAAATGTAGAAAATTAG
Protein sequence

>MsG0180000080.01.T01

MATLDISEKESIKEEPESKDLEDIIYDFSSDDDSKDDGNFVKIEQLEMGESSRTKRGPSYNWNTEFHREFSQAKFQRIPMSYVPKHSVNDGSGILNIDCVDNLAQAIRSWYNKNIIQIQLDSDLKNLTPKQIFNYLLCRTEGNAYKFLAEKPDEEQTAENSIGMINKVFEWLLNEFKGWQDTVDSNVAFNAEKLWRIMNLSICNPCYIENYICEFSQLYYDLNKDTRENQKVVELFYQKLPMAMSQIIQTEFNSAVSSGKVKDTLGARISILRNWMQEQCLKKQSKRDARIGLCCDRIQGRIGAYGCEKTRRKRKYPRRKKFKKFSYDKKKHRKKRFYRKKREYPRKNKTCPKGKKSCTCWLCHETGHYANECPKKVSKEKKQVLNMIYRIGYEPVESDSDSDWEQQSFYELCTDSEDEQNQNFEENGTLDLSPHVQEKIQAFPDELKDRKQIQRFLGCLNYIANEGFFKNLATERKILQKKISEKVPWSWTEQDTLTVKTIKRKIKVLPSLYNPTENDFLIVEIDADKTTWAGCMRALPNGKAILNLDDSGNYVDDVTHQQGMKDTGATQCIDKRMEAAIKTLQNSLRQKQEQIASAKNRLETLLSEEGEMILTIQNLEKLCKKETSIVSESKNTENWDLLGQDSGKFNYYVKYSAPKESNIPIESIEPKGWKSSTNPTTVLADLPKTSWADKVEEEERKNGKEKESIDQQTSQKIDSQLGGKKKAYVIFDGPMKGIYQNWETTKLHTNGKNVRYKGYETLEEAKAAYNAVYKEVTIASNIVQPSKMETKKKISVDRIIYGESKFVKEVTIGDYYKNWRWLTNYSEELKTECFYPSNNGIEVKAVTVPGVSKELVRSFYDCGMIKTMYLQEDAGRKIHELELLPKDIGEIAYKFNTSFAKGKEFFLSFTSTYPWFEDDEVIKARHLIKIGISNHSYPTNDGRNVDPRPECFLHQMEKFYDTLIRFGVKLPNFRVITAKESFLVYSDSRKQAKEEHLQQILKFEENFSGLEADLGRLPDPIQQECCRHFQKYKGHQCKWCAKDINNVADKESLYDSDVSPNNEENVEN*