AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000088.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000088.01.T01 MTR_7g015420 34.656 378 187 10 756 1121 809 1138 1.58e-47 186
MsG0180000088.01.T01 MTR_6g059420 27.197 239 151 8 46 266 1 234 2.76e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 147 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTCAGTTTGGATTATT+TGG 0.060926 1:+1290071 None:intergenic
CCAAATATGTAACTGGATTT+TGG 0.106067 1:-1287603 MsG0180000088.01.T01:CDS
AATCACTATCTAGCTGTATT+TGG 0.135219 1:+1290458 None:intergenic
CCAAAATCCAGTTACATATT+TGG 0.139581 1:+1287603 None:intergenic
GTTTCCTTTACTCAAAATTT+TGG 0.161223 1:+1289543 None:intergenic
ATTGGGATATTTGACTCTTT+TGG 0.176459 1:+1287206 None:intergenic
TTACTTTGTAAATATGTTTC+AGG 0.178884 1:-1287748 MsG0180000088.01.T01:CDS
GAGTAAAATTACCAAATTTC+AGG 0.195192 1:-1286278 MsG0180000088.01.T01:CDS
GCAGTAATTACCCTGAAATT+TGG 0.196187 1:+1286267 None:intergenic
TACTTCTATCCCGTTGTTGC+TGG 0.222323 1:+1286671 None:intergenic
TTCTTCTTCTTCGACTTTAT+CGG 0.234574 1:+1287103 None:intergenic
GAATTTCTATCCTTAGAAAT+TGG 0.236992 1:-1290003 MsG0180000088.01.T01:CDS
CATAACTCATAGGAATTCTT+TGG 0.249955 1:+1290581 None:intergenic
TTCTTAAATTTCTTTCTTCT+AGG 0.256554 1:+1289857 None:intergenic
AGATTCAGGTTCTTCCTTAA+TGG 0.262360 1:+1290774 None:intergenic
TACGATACTCTCATTAGATT+TGG 0.262791 1:-1286300 MsG0180000088.01.T01:CDS
GTTGAAGATTTCCATCCTTT+TGG 0.263264 1:+1287170 None:intergenic
TGAAAGGTATCTACCAAAAC+TGG 0.267449 1:-1286974 MsG0180000088.01.T01:CDS
GCGATTTCGCCTATATCTTT+TGG 0.270486 1:+1286525 None:intergenic
GTTCTTGCATCCAATTTCTA+AGG 0.272277 1:+1289993 None:intergenic
TATCTTTCATTCCTTGTTGA+TGG 0.272294 1:+1287917 None:intergenic
CTTCGCGTCAATTATAAATA+TGG 0.273747 1:-1287571 MsG0180000088.01.T01:CDS
TTTATTATACCAACTTCTTA+TGG 0.275002 1:+1290489 None:intergenic
TCCATCATTTACACTATGTT+TGG 0.275943 1:+1290555 None:intergenic
AAAGAGGACCCTCTTATAAT+TGG 0.278798 1:-1290642 MsG0180000088.01.T01:CDS
TTTGGTTCTATTGACTCAAT+TGG 0.279131 1:+1287188 None:intergenic
AATGTTTCTAATTCATGAAT+TGG 0.292373 1:+1287697 None:intergenic
AAAATAATTCGACAACCTTT+TGG 0.294442 1:+1290119 None:intergenic
GGAAAGGTTAAAGATACTTT+AGG 0.297444 1:-1290031 MsG0180000088.01.T01:CDS
CGATTTATCTCCACATGTTC+AGG 0.303515 1:-1288304 MsG0180000088.01.T01:CDS
TCTTCTAGATCTTTAGATTC+AGG 0.303572 1:+1290760 None:intergenic
ACTTTGTGGTTTCCCAGTTT+TGG 0.319312 1:+1286961 None:intergenic
TAGCTTGAGAAAATTCTCTA+TGG 0.333849 1:+1290608 None:intergenic
AAATTCAGTTTGGATTATTT+GGG 0.338129 1:+1290072 None:intergenic
CTGCACTGTTAAATTCAGTT+TGG 0.338938 1:+1290062 None:intergenic
CGGCAGCACTCCTGTTGGAT+TGG 0.347690 1:+1286120 None:intergenic
TAGTAGCTCGAAAGAGAAAT+TGG 0.349793 1:-1287869 MsG0180000088.01.T01:CDS
TGCAGAAAACATTCTGGTCT+TGG 0.357127 1:+1286339 None:intergenic
TAAAATAGAACAATTAGAAA+TGG 0.358170 1:-1290683 MsG0180000088.01.T01:CDS
AAGCTGCCTTTGCTTCTTCA+AGG 0.360635 1:+1286895 None:intergenic
TTTCGGTCTTTCAATTCATC+AGG 0.368132 1:+1288264 None:intergenic
ACATTTCTTCCATCATTTGT+TGG 0.374903 1:+1286366 None:intergenic
GCCATTTGTATGTAACTTTG+TGG 0.376569 1:+1286947 None:intergenic
CCATCATTTACACTATGTTT+GGG 0.377296 1:+1290556 None:intergenic
GCCAATCTTGATTAAGTGTC+TGG 0.377449 1:+1286407 None:intergenic
TTCAGTATCGCTTTACCATT+AGG 0.378679 1:+1287976 None:intergenic
AAGAAAATGTAGAAAATTAG+TGG 0.379355 1:-1285990 None:intergenic
ACAGATTCCAAATATGTAAC+TGG 0.379388 1:-1287610 MsG0180000088.01.T01:CDS
CAACAAGGAATGAAAGATAC+TGG 0.383949 1:-1287913 MsG0180000088.01.T01:CDS
ACTAACTCTTTGCTTACGCC+TGG 0.386034 1:+1286633 None:intergenic
GATAGAATCCAAGGTAGAAT+TGG 0.387295 1:-1289920 MsG0180000088.01.T01:CDS
ATTTGATGCAGAAAACATTC+TGG 0.395086 1:+1286333 None:intergenic
GGCAGCACTCCTGTTGGATT+GGG 0.395123 1:+1286121 None:intergenic
TTCTGTTGGATTGTATAAGC+TGG 0.396028 1:+1288065 None:intergenic
TTTAACAGTGCAGTATCTTC+AGG 0.396899 1:-1290052 MsG0180000088.01.T01:CDS
AATCAGATTCAGATTCTGAT+TGG 0.399740 1:-1289616 MsG0180000088.01.T01:CDS
TTCTGTATTCCAATTATAAG+AGG 0.402053 1:+1290633 None:intergenic
GAACTTCTTCCAAAAGATAT+AGG 0.403358 1:-1286534 MsG0180000088.01.T01:CDS
ATACTGAATCTCGATGATTC+AGG 0.409471 1:-1287961 MsG0180000088.01.T01:CDS
TTCTAGTCTATAGTGATTCA+AGG 0.411181 1:-1286233 MsG0180000088.01.T01:CDS
TCTGCAGTTTGTTCCTCGTC+AGG 0.412696 1:+1290352 None:intergenic
TTGAATTATATTGCCAATGA+AGG 0.413188 1:-1288216 MsG0180000088.01.T01:CDS
TTGACTTGTTTGTTGATCAA+TGG 0.416478 1:+1287055 None:intergenic
ATGAATTGGATATCTTGTTT+CGG 0.417558 1:+1287711 None:intergenic
GATCTGCTAGGTCAAGATTC+TGG 0.420897 1:-1287260 MsG0180000088.01.T01:CDS
TTGGTTCTATTGACTCAATT+GGG 0.424911 1:+1287189 None:intergenic
TCAATTCATCAGGGAAAGCT+TGG 0.427426 1:+1288274 None:intergenic
AGTAAAATTACCAAATTTCA+GGG 0.432065 1:-1286277 MsG0180000088.01.T01:CDS
ATCTTTCATTCCTTGTTGAT+GGG 0.432512 1:+1287918 None:intergenic
TCTTAAATTTCTTTCTTCTA+GGG 0.438843 1:+1289858 None:intergenic
TTAAACATGATCTATAGAAT+AGG 0.445975 1:-1289653 MsG0180000088.01.T01:CDS
CATTCATATCCAACAAATGA+TGG 0.446131 1:-1286375 MsG0180000088.01.T01:CDS
TATGTAACAAGGATTACATA+TGG 0.448515 1:+1290204 None:intergenic
GCCAGACACTTAATCAAGAT+TGG 0.450355 1:-1286408 MsG0180000088.01.T01:CDS
TGATTAATAAAGTCTTTGAA+TGG 0.451324 1:-1290315 MsG0180000088.01.T01:CDS
CAAAAGATTGATAGTCAACT+TGG 0.452577 1:-1287035 MsG0180000088.01.T01:CDS
TCTGTAGATAGAATTATCTA+TGG 0.455797 1:-1286795 MsG0180000088.01.T01:CDS
TGCTGGTTATGTCATGAAAC+AGG 0.456188 1:-1289728 MsG0180000088.01.T01:CDS
TAGTGGGCTTGAAGCAGACT+TGG 0.456753 1:-1286157 MsG0180000088.01.T01:CDS
CAAGGTAGAATTGGAGCATA+TGG 0.457798 1:-1289911 MsG0180000088.01.T01:CDS
AAATCTGCAAGGACAGTTGT+TGG 0.459606 1:+1287143 None:intergenic
ACCACAAAGTTACATACAAA+TGG 0.460165 1:-1286948 MsG0180000088.01.T01:CDS
GTTGGATTGGGTCGGGTAGA+CGG 0.463813 1:+1286133 None:intergenic
AAAATAGAACAATTAGAAAT+GGG 0.466764 1:-1290682 MsG0180000088.01.T01:CDS
CACTCCTGTTGGATTGGGTC+GGG 0.468177 1:+1286126 None:intergenic
ACTTCTATCCCGTTGTTGCT+GGG 0.468477 1:+1286672 None:intergenic
AGAAACTCTTCTTTCTGAAG+AGG 0.471501 1:-1287372 MsG0180000088.01.T01:CDS
AGCTGCCTTTGCTTCTTCAA+GGG 0.473579 1:+1286896 None:intergenic
AGCTTACAACGCTGTTTACA+AGG 0.475751 1:-1286877 MsG0180000088.01.T01:CDS
AATCTGCAAGGACAGTTGTT+GGG 0.476787 1:+1287144 None:intergenic
GTCAGATCATTCTATGATTG+TGG 0.478585 1:-1286612 MsG0180000088.01.T01:CDS
ATCAGATTCAGATTCTGATT+GGG 0.485677 1:-1289615 MsG0180000088.01.T01:CDS
TGTTTGGGAACATAACTCAT+AGG 0.490756 1:+1290571 None:intergenic
CCCAAACATAGTGTAAATGA+TGG 0.495071 1:-1290556 MsG0180000088.01.T01:CDS
GAAACTCTTCTTTCTGAAGA+GGG 0.496733 1:-1287371 MsG0180000088.01.T01:CDS
GAATCTGAATCTGATTCTAC+TGG 0.497480 1:+1289623 None:intergenic
TCTACCCGACCCAATCCAAC+AGG 0.498593 1:-1286130 MsG0180000088.01.T01:CDS
GCACTCCTGTTGGATTGGGT+CGG 0.499875 1:+1286125 None:intergenic
TCTGTTGGATTGTATAAGCT+GGG 0.501680 1:+1288066 None:intergenic
CATATGCTCCAATTCTACCT+TGG 0.508912 1:+1289912 None:intergenic
CTAACTCTTTGCTTACGCCT+GGG 0.512622 1:+1286634 None:intergenic
AGCTACTAGACTTAGCGTAC+TGG 0.512695 1:+1287884 None:intergenic
CATAGTGTAAATGATGGAAG+TGG 0.519664 1:-1290550 MsG0180000088.01.T01:CDS
CTGAGAAAGTTCCATGGTCA+TGG 0.521543 1:-1288143 MsG0180000088.01.T01:CDS
TGTATGAGAGCTCTACCTAA+TGG 0.523123 1:-1287991 MsG0180000088.01.T01:CDS
TTCAAGGAAACAAGCAAAAG+AGG 0.531119 1:-1286217 MsG0180000088.01.T01:CDS
TTTGTTAAAGAAGTCACCGT+TGG 0.533067 1:-1286762 MsG0180000088.01.T01:CDS
TAGCTCAAGCCATAAGAAGT+TGG 0.533778 1:-1290498 MsG0180000088.01.T01:CDS
ATTGAGTCAATAGAACCAAA+AGG 0.537061 1:-1287185 MsG0180000088.01.T01:CDS
GAATTCTCTCAGGCAAAAGC+AGG 0.538301 1:-1287423 MsG0180000088.01.T01:CDS
AGTGGGCTTGAAGCAGACTT+GGG 0.544386 1:-1286156 MsG0180000088.01.T01:CDS
ATTATTTGGGACATTGCCAT+AGG 0.546022 1:+1290085 None:intergenic
AGACATTACAGAATTCTCTC+AGG 0.548576 1:-1287433 MsG0180000088.01.T01:intron
GCTACTAGACTTAGCGTACT+GGG 0.550223 1:+1287885 None:intergenic
CATATTTATAATTGACGCGA+AGG 0.550684 1:+1287572 None:intergenic
ATGTATCTTCAAGAAGATGC+AGG 0.554490 1:-1286576 MsG0180000088.01.T01:CDS
AACTCTTCTTTCTGAAGAGG+GGG 0.562354 1:-1287369 MsG0180000088.01.T01:CDS
AAGATTGATAGTCAACTTGG+AGG 0.562508 1:-1287032 MsG0180000088.01.T01:CDS
CAGTGCAGTATCTTCAGGAA+AGG 0.567036 1:-1290047 MsG0180000088.01.T01:CDS
GCTGATAAAACAACCTGGGC+AGG 0.567068 1:-1288015 MsG0180000088.01.T01:CDS
ACTGAAAACTGGGATCTGCT+AGG 0.568544 1:-1287272 MsG0180000088.01.T01:CDS
TTCAATAATAGCTTCGCGAA+AGG 0.569421 1:-1286495 MsG0180000088.01.T01:CDS
AGCTCTCATACAACCTGCCC+AGG 0.571879 1:+1288002 None:intergenic
GTAAAAGCTGTAACAGTCCC+AGG 0.575657 1:-1286651 MsG0180000088.01.T01:CDS
CAAACTGCAGAAAATAGTAT+CGG 0.576329 1:-1290340 MsG0180000088.01.T01:CDS
TTGTGCTGTGATAGAATCCA+AGG 0.581034 1:-1289929 MsG0180000088.01.T01:CDS
TTCGGTCTTTCAATTCATCA+GGG 0.583186 1:+1288265 None:intergenic
AGTCAATAGAACCAAAAGGA+TGG 0.585856 1:-1287181 MsG0180000088.01.T01:CDS
ACTTCATCGTCTTCGAACCA+TGG 0.587820 1:+1286438 None:intergenic
TCTGTATTCCAATTATAAGA+GGG 0.595899 1:+1290634 None:intergenic
GTTTAAAGGATGGCAAGATA+CGG 0.597363 1:-1290281 MsG0180000088.01.T01:CDS
TGAGACCCTTGAAGAAGCAA+AGG 0.609616 1:-1286901 MsG0180000088.01.T01:CDS
AGACACTAGAGAAAACCAAA+AGG 0.610390 1:-1290134 MsG0180000088.01.T01:CDS
GAAAGGTATCTACCAAAACT+GGG 0.613427 1:-1286973 MsG0180000088.01.T01:CDS
AAACTCTTCTTTCTGAAGAG+GGG 0.613562 1:-1287370 MsG0180000088.01.T01:CDS
TTGATGCTGATAAAACAACC+TGG 0.621338 1:-1288020 MsG0180000088.01.T01:CDS
AGTGTCGGCAGCACTCCTGT+TGG 0.622979 1:+1286115 None:intergenic
ACAAAGGACACCAATGCAAG+TGG 0.634278 1:-1286083 MsG0180000088.01.T01:CDS
GAACATGTGGAGATAAATCG+AGG 0.637791 1:+1288307 None:intergenic
TCTTGTTCAGTCCATGACCA+TGG 0.640314 1:+1288132 None:intergenic
AGATATCTGAGAAAGTTCCA+TGG 0.642488 1:-1288149 MsG0180000088.01.T01:CDS
AACATGTGGAGATAAATCGA+GGG 0.664334 1:+1288308 None:intergenic
TGATGCTGATAAAACAACCT+GGG 0.665277 1:-1288019 MsG0180000088.01.T01:CDS
GATGATGTAACCCATCAACA+AGG 0.679569 1:-1287928 MsG0180000088.01.T01:CDS
TTTAGCTGAGAAACCTGACG+AGG 0.692058 1:-1290365 MsG0180000088.01.T01:CDS
GATGATGATTCAAAAGACGA+CGG 0.705876 1:-1290715 MsG0180000088.01.T01:CDS
TGCAAAAGACATAAATAACG+TGG 0.724731 1:-1286058 MsG0180000088.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATTAAAAGAAAAATTA+AGG - Chr1:1288704-1288723 MsG0180000088.01.T01:intron 10.0%
!!! GATTTTATATATTCAATATA+TGG + Chr1:1289293-1289312 None:intergenic 10.0%
!!! TATATTTTGCAAAAAATAAA+AGG - Chr1:1288093-1288112 MsG0180000088.01.T01:CDS 10.0%
!! AAAATAGAACAATTAGAAAT+GGG - Chr1:1286116-1286135 MsG0180000088.01.T01:CDS 15.0%
!! AGATAAAATAGAATTTCAAA+AGG - Chr1:1287892-1287911 MsG0180000088.01.T01:CDS 15.0%
!! TAAAATAGAACAATTAGAAA+TGG - Chr1:1286115-1286134 MsG0180000088.01.T01:CDS 15.0%
!!! AAAATCTTTGAATTTGTTTT+CGG + Chr1:1288554-1288573 None:intergenic 15.0%
!!! AAACAAATTCAAAGATTTTT+AGG - Chr1:1288555-1288574 MsG0180000088.01.T01:intron 15.0%
!!! AGATAATTAAAAATCTGTTT+TGG + Chr1:1286380-1286399 None:intergenic 15.0%
!!! ATATAATTTTCTATGTAACA+AGG + Chr1:1286608-1286627 None:intergenic 15.0%
!!! ATGAAGTTTTATTTTGATAA+AGG + Chr1:1287291-1287310 None:intergenic 15.0%
!!! ATTAAAAAATCATTTTCTGT+TGG + Chr1:1288750-1288769 None:intergenic 15.0%
!!! GATATTTTAGTTTTTACAAA+AGG - Chr1:1288328-1288347 MsG0180000088.01.T01:intron 15.0%
!!! TAAAGTTTTTTTCAAACTTT+AGG + Chr1:1290623-1290642 None:intergenic 15.0%
!!! TTAAAACTATTTCTTTACTT+TGG - Chr1:1287582-1287601 MsG0180000088.01.T01:CDS 15.0%
!! AAAAAATAAAAGGATGTGAT+TGG - Chr1:1288103-1288122 MsG0180000088.01.T01:CDS 20.0%
!! AAAGATTCTATAGAAAAAAG+AGG - Chr1:1286996-1287015 MsG0180000088.01.T01:CDS 20.0%
!! AAATTCAGTTTGGATTATTT+GGG + Chr1:1286729-1286748 None:intergenic 20.0%
!! AACGAAACATATCAAAAAAT+TGG - Chr1:1287363-1287382 MsG0180000088.01.T01:CDS 20.0%
!! AAGATTCTATAGAAAAAAGA+GGG - Chr1:1286997-1287016 MsG0180000088.01.T01:CDS 20.0%
!! AAGTTTGAAAAAAACTTTAG+TGG - Chr1:1290624-1290643 MsG0180000088.01.T01:CDS 20.0%
!! AATCACAATGAAATAAAAAG+AGG - Chr1:1287992-1288011 MsG0180000088.01.T01:CDS 20.0%
!! ACGAAACATATCAAAAAATT+GGG - Chr1:1287364-1287383 MsG0180000088.01.T01:CDS 20.0%
!! AGTAAAATTACCAAATTTCA+GGG - Chr1:1290521-1290540 MsG0180000088.01.T01:CDS 20.0%
!! AGTTTGAAAAAAACTTTAGT+GGG - Chr1:1290625-1290644 MsG0180000088.01.T01:CDS 20.0%
!! ATAAATCTTTGGTATATAGA+TGG + Chr1:1288259-1288278 None:intergenic 20.0%
!! ATAAGTCAAAACATCAAATA+TGG - Chr1:1287423-1287442 MsG0180000088.01.T01:CDS 20.0%
!! ATCTATATACCAAAGATTTA+TGG - Chr1:1288258-1288277 MsG0180000088.01.T01:CDS 20.0%
!! ATCTGTTCTTAATAAAAATC+TGG + Chr1:1289174-1289193 None:intergenic 20.0%
!! CAAAATAAAACTTCATAAGA+AGG - Chr1:1287295-1287314 MsG0180000088.01.T01:CDS 20.0%
!! TAAATTCAGTTTGGATTATT+TGG + Chr1:1286730-1286749 None:intergenic 20.0%
!! TCTTAAATTTCTTTCTTCTA+GGG + Chr1:1286943-1286962 None:intergenic 20.0%
!! TGATTAATAAAGTCTTTGAA+TGG - Chr1:1286483-1286502 MsG0180000088.01.T01:CDS 20.0%
!! TTAAACAGAATTTCAGAAAA+AGG - Chr1:1288388-1288407 MsG0180000088.01.T01:intron 20.0%
!! TTAAACATGATCTATAGAAT+AGG - Chr1:1287145-1287164 MsG0180000088.01.T01:CDS 20.0%
!! TTACTTTGTAAATATGTTTC+AGG - Chr1:1289050-1289069 MsG0180000088.01.T01:intron 20.0%
!! TTCTTAAATTTCTTTCTTCT+AGG + Chr1:1286944-1286963 None:intergenic 20.0%
!! TTTACATTAATCTCCTTATT+AGG + Chr1:1287848-1287867 None:intergenic 20.0%
!! TTTATTATACCAACTTCTTA+TGG + Chr1:1286312-1286331 None:intergenic 20.0%
!!! AAAACCAAAATTTTGAGTAA+AGG - Chr1:1287251-1287270 MsG0180000088.01.T01:CDS 20.0%
!!! AAATACTCTTTAGGTTTATA+AGG + Chr1:1287697-1287716 None:intergenic 20.0%
!!! AATGTTTCTAATTCATGAAT+TGG + Chr1:1289104-1289123 None:intergenic 20.0%
!!! ATAACTTTTGTCTTTTCTTT+GGG + Chr1:1287623-1287642 None:intergenic 20.0%
!!! ATTTTACCAAAAATTACCTA+TGG - Chr1:1286697-1286716 MsG0180000088.01.T01:CDS 20.0%
!!! ATTTTATCTTGAACTGAATA+AGG + Chr1:1287881-1287900 None:intergenic 20.0%
!!! ATTTTTGAAAAATCCTTCAT+TGG + Chr1:1288598-1288617 None:intergenic 20.0%
!!! CATTATTCTCCATAATTTTT+CGG + Chr1:1286567-1286586 None:intergenic 20.0%
!!! GTGTTAAAGTTTTAACAAAA+TGG - Chr1:1289129-1289148 MsG0180000088.01.T01:intron 20.0%
!!! TATAAACCTAAAGAGTATTT+GGG - Chr1:1287697-1287716 MsG0180000088.01.T01:CDS 20.0%
!!! TATAACTTTTGTCTTTTCTT+TGG + Chr1:1287624-1287643 None:intergenic 20.0%
!!! TGAAGGATTTTTCAAAAATT+TGG - Chr1:1288599-1288618 MsG0180000088.01.T01:intron 20.0%
!!! TTATAAACCTAAAGAGTATT+TGG - Chr1:1287696-1287715 MsG0180000088.01.T01:CDS 20.0%
!!! TTTTAAATGAGTTTAAAGGA+TGG - Chr1:1286507-1286526 MsG0180000088.01.T01:CDS 20.0%
!!! TTTTCTTTAGAAACTTTCTT+TGG + Chr1:1287115-1287134 None:intergenic 20.0%
! AAAAATAAAACCTGTCCTAA+AGG - Chr1:1287031-1287050 MsG0180000088.01.T01:CDS 25.0%
! AAGTGAAAAAGAATCCATTA+AGG - Chr1:1286010-1286029 MsG0180000088.01.T01:CDS 25.0%
! AATCCAAAAATACTGAAAAC+TGG - Chr1:1289515-1289534 MsG0180000088.01.T01:intron 25.0%
! AGATTTACCAAAAACATCTT+GGG - Chr1:1289672-1289691 MsG0180000088.01.T01:CDS 25.0%
! AGGATTAGAACATATATGTT+TGG - Chr1:1288294-1288313 MsG0180000088.01.T01:CDS 25.0%
! ATCCAAAAATACTGAAAACT+GGG - Chr1:1289516-1289535 MsG0180000088.01.T01:intron 25.0%
! CAAAAAGGAAATGAGTATTT+AGG - Chr1:1288444-1288463 MsG0180000088.01.T01:intron 25.0%
! CGAAGAAAATGTAGAAAATT+AGG - Chr1:1290806-1290825 MsG0180000088.01.T01:CDS 25.0%
! GAAGAAGAAGAAAGAAAAAA+TGG - Chr1:1289706-1289725 MsG0180000088.01.T01:CDS 25.0%
! GAATTTCTATCCTTAGAAAT+TGG - Chr1:1286795-1286814 MsG0180000088.01.T01:CDS 25.0%
! GAGTAAAATTACCAAATTTC+AGG - Chr1:1290520-1290539 MsG0180000088.01.T01:CDS 25.0%
! GATATCTCAATTACTATAGA+AGG - Chr1:1287458-1287477 MsG0180000088.01.T01:intron 25.0%
! GTTCTTAATAAAAATCTGGT+TGG + Chr1:1289170-1289189 None:intergenic 25.0%
! TATGTAACAAGGATTACATA+TGG + Chr1:1286597-1286616 None:intergenic 25.0%
! TATTCAATATATGGGTGAAA+CGG + Chr1:1289284-1289303 None:intergenic 25.0%
! TCAAAAAATTGGGAAAGATT+AGG - Chr1:1287374-1287393 MsG0180000088.01.T01:CDS 25.0%
! TCAGGATTAGATTTAATCAT+TGG - Chr1:1287518-1287537 MsG0180000088.01.T01:intron 25.0%
! TCTGTAGATAGAATTATCTA+TGG - Chr1:1290003-1290022 MsG0180000088.01.T01:CDS 25.0%
! TCTGTATTCCAATTATAAGA+GGG + Chr1:1286167-1286186 None:intergenic 25.0%
! TTAAATCTAATCCTGAATCA+TGG + Chr1:1287514-1287533 None:intergenic 25.0%
! TTCTGTATTCCAATTATAAG+AGG + Chr1:1286168-1286187 None:intergenic 25.0%
! TTCTTATAAATTACCACGAA+AGG - Chr1:1288068-1288087 MsG0180000088.01.T01:CDS 25.0%
! TTGAATTATATTGCCAATGA+AGG - Chr1:1288582-1288601 MsG0180000088.01.T01:intron 25.0%
!! AAAATAATTCGACAACCTTT+TGG + Chr1:1286682-1286701 None:intergenic 25.0%
!! ATCTGCAACAATTATTTCTT+TGG + Chr1:1287405-1287424 None:intergenic 25.0%
!! ATGAATTGGATATCTTGTTT+CGG + Chr1:1289090-1289109 None:intergenic 25.0%
!! CTAAATACTCATTTCCTTTT+TGG + Chr1:1288446-1288465 None:intergenic 25.0%
!! CTTTTAATGCCGAAAAATTA+TGG - Chr1:1286555-1286574 MsG0180000088.01.T01:CDS 25.0%
!! GTTTCCTTTACTCAAAATTT+TGG + Chr1:1287258-1287277 None:intergenic 25.0%
!! TAACTTTTGTCTTTTCTTTG+GGG + Chr1:1287622-1287641 None:intergenic 25.0%
!! TCTGCAACAATTATTTCTTT+GGG + Chr1:1287404-1287423 None:intergenic 25.0%
!! TGGCTTTTAAATGAGTTTAA+AGG - Chr1:1286503-1286522 MsG0180000088.01.T01:CDS 25.0%
!!! AGTTTTAACAAAATGGCAAA+TGG - Chr1:1289136-1289155 MsG0180000088.01.T01:intron 25.0%
!!! ATTTTAGCCTATTTAGATAC+AGG - Chr1:1287320-1287339 MsG0180000088.01.T01:CDS 25.0%
!!! CTCTTTTTGATTGTTTCTTT+AGG + Chr1:1286835-1286854 None:intergenic 25.0%
!!! CTTTGTATTTTTGAAAGTGT+CGG + Chr1:1290701-1290720 None:intergenic 25.0%
!!! CTTTTTTGCATAGTTTTTCA+AGG + Chr1:1289477-1289496 None:intergenic 25.0%
!!! GTTTTAACATTTTGCACAAA+CGG + Chr1:1287569-1287588 None:intergenic 25.0%
!!! TGCCATTTTCTCTAAAAATA+AGG + Chr1:1288470-1288489 None:intergenic 25.0%
AAAAAGAGGAAAAGCTAGAA+TGG - Chr1:1288006-1288025 MsG0180000088.01.T01:CDS 30.0%
AATATGGAAGACTTGTAAGA+TGG - Chr1:1289243-1289262 MsG0180000088.01.T01:intron 30.0%
AATCACTATCTAGCTGTATT+TGG + Chr1:1286343-1286362 None:intergenic 30.0%
AATCAGATTCAGATTCTGAT+TGG - Chr1:1287182-1287201 MsG0180000088.01.T01:CDS 30.0%
ACAATTTATCTCCATGATTC+AGG - Chr1:1287500-1287519 MsG0180000088.01.T01:intron 30.0%
ACAGATTCCAAATATGTAAC+TGG - Chr1:1289188-1289207 MsG0180000088.01.T01:intron 30.0%
ACATTTCTTCCATCATTTGT+TGG + Chr1:1290435-1290454 None:intergenic 30.0%
ACCACAAAGTTACATACAAA+TGG - Chr1:1289850-1289869 MsG0180000088.01.T01:CDS 30.0%
ATCAGATTCAGATTCTGATT+GGG - Chr1:1287183-1287202 MsG0180000088.01.T01:CDS 30.0%
ATCTTTCATTCCTTGTTGAT+GGG + Chr1:1288883-1288902 None:intergenic 30.0%
ATTGAGTCAATAGAACCAAA+AGG - Chr1:1289613-1289632 MsG0180000088.01.T01:CDS 30.0%
ATTTGATGCAGAAAACATTC+TGG + Chr1:1290468-1290487 None:intergenic 30.0%
CAAACTGCAGAAAATAGTAT+CGG - Chr1:1286458-1286477 MsG0180000088.01.T01:CDS 30.0%
CAAATTACGAGATCCTAATA+AGG - Chr1:1287832-1287851 MsG0180000088.01.T01:CDS 30.0%
CAGATTTACCAAAAACATCT+TGG - Chr1:1289671-1289690 MsG0180000088.01.T01:CDS 30.0%
CATAACTCATAGGAATTCTT+TGG + Chr1:1286220-1286239 None:intergenic 30.0%
CATATGGTTGTGAAAAAACT+AGG - Chr1:1286903-1286922 MsG0180000088.01.T01:CDS 30.0%
CATATTTATAATTGACGCGA+AGG + Chr1:1289229-1289248 None:intergenic 30.0%
CATTCATATCCAACAAATGA+TGG - Chr1:1290423-1290442 MsG0180000088.01.T01:CDS 30.0%
CCAAAATCCAGTTACATATT+TGG + Chr1:1289198-1289217 None:intergenic 30.0%
CCATCATTTACACTATGTTT+GGG + Chr1:1286245-1286264 None:intergenic 30.0%
CCTATGACAAAAAGAAACAT+AGG - Chr1:1286969-1286988 MsG0180000088.01.T01:CDS 30.0%
CGACACTTTCAAAAATACAA+AGG - Chr1:1290699-1290718 MsG0180000088.01.T01:CDS 30.0%
CTTCGCGTCAATTATAAATA+TGG - Chr1:1289227-1289246 MsG0180000088.01.T01:intron 30.0%
GAAATCACAATTAGCCAAAA+AGG - Chr1:1288429-1288448 MsG0180000088.01.T01:intron 30.0%
GAACTTCTTCCAAAAGATAT+AGG - Chr1:1290264-1290283 MsG0180000088.01.T01:CDS 30.0%
GAATCATGGAGATAAATTGT+TGG + Chr1:1287500-1287519 None:intergenic 30.0%
GAGCATTATCCATAAATCTT+TGG + Chr1:1288270-1288289 None:intergenic 30.0%
GGAAAGGTTAAAGATACTTT+AGG - Chr1:1286767-1286786 MsG0180000088.01.T01:CDS 30.0%
TACGATACTCTCATTAGATT+TGG - Chr1:1290498-1290517 MsG0180000088.01.T01:CDS 30.0%
TAGCTTGAGAAAATTCTCTA+TGG + Chr1:1286193-1286212 None:intergenic 30.0%
TATCTTTCATTCCTTGTTGA+TGG + Chr1:1288884-1288903 None:intergenic 30.0%
TCCATCATTTACACTATGTT+TGG + Chr1:1286246-1286265 None:intergenic 30.0%
TCTTCTAGATCTTTAGATTC+AGG + Chr1:1286041-1286060 None:intergenic 30.0%
TGCAAAAGACATAAATAACG+TGG - Chr1:1290740-1290759 MsG0180000088.01.T01:CDS 30.0%
TGCAAAATATAATCCTTTCG+TGG + Chr1:1288084-1288103 None:intergenic 30.0%
TTCTAGTCTATAGTGATTCA+AGG - Chr1:1290565-1290584 MsG0180000088.01.T01:CDS 30.0%
TTCTTCTTCTTCGACTTTAT+CGG + Chr1:1289698-1289717 None:intergenic 30.0%
TTTATGGATAATGCTCTTAG+AGG - Chr1:1288274-1288293 MsG0180000088.01.T01:CDS 30.0%
! AAAGCTTATGTGATTTTCGA+TGG - Chr1:1289796-1289815 MsG0180000088.01.T01:CDS 30.0%
! ACATTGCCATAGGTAATTTT+TGG + Chr1:1286706-1286725 None:intergenic 30.0%
! AGAATGTTTTCTGCATCAAA+TGG - Chr1:1290467-1290486 MsG0180000088.01.T01:CDS 30.0%
! ATCCCAGTTTTCAGTATTTT+TGG + Chr1:1289521-1289540 None:intergenic 30.0%
! ATTGGGATATTTGACTCTTT+TGG + Chr1:1289595-1289614 None:intergenic 30.0%
! CAAAAGATTGATAGTCAACT+TGG - Chr1:1289763-1289782 MsG0180000088.01.T01:CDS 30.0%
! CCAAATATGTAACTGGATTT+TGG - Chr1:1289195-1289214 MsG0180000088.01.T01:intron 30.0%
! CCTATGTTTCTTTTTGTCAT+AGG + Chr1:1286972-1286991 None:intergenic 30.0%
! CTTTTACTTCAACTTATCCA+TGG - Chr1:1290343-1290362 MsG0180000088.01.T01:CDS 30.0%
! GTGATTTGTCACATAAAAAG+CGG + Chr1:1287978-1287997 None:intergenic 30.0%
! TATCTTTTGTGTAGAACAGA+AGG - Chr1:1286395-1286414 MsG0180000088.01.T01:CDS 30.0%
! TCATCTTTTGATGCAAAATC+AGG - Chr1:1288129-1288148 MsG0180000088.01.T01:CDS 30.0%
! TCTACATTTTCTTCGTTGTT+TGG + Chr1:1290801-1290820 None:intergenic 30.0%
! TGATTTGTCACATAAAAAGC+GGG + Chr1:1287977-1287996 None:intergenic 30.0%
! TTTTGATAAAGGTAGCACTA+GGG + Chr1:1287280-1287299 None:intergenic 30.0%
! TTTTGGTAGATACCTTTCAT+AGG + Chr1:1289823-1289842 None:intergenic 30.0%
!! ATTTTGATAAAGGTAGCACT+AGG + Chr1:1287281-1287300 None:intergenic 30.0%
!! GTGTTTTTCAGATTATCCAA+AGG + Chr1:1287791-1287810 None:intergenic 30.0%
!! TTGACTTGTTTGTTGATCAA+TGG + Chr1:1289746-1289765 None:intergenic 30.0%
!! TTGGTTCTATTGACTCAATT+GGG + Chr1:1289612-1289631 None:intergenic 30.0%
!! TTTGGTTCTATTGACTCAAT+TGG + Chr1:1289613-1289632 None:intergenic 30.0%
!! TTTTAACTCTTCTGAGTAGT+TGG + Chr1:1290091-1290110 None:intergenic 30.0%
!!! ATGTTTTTGGTAAATCTGCA+AGG + Chr1:1289669-1289688 None:intergenic 30.0%
!!! ATTTTGGTTTTGCTCATCTT+CGG + Chr1:1287242-1287261 None:intergenic 30.0%
!!! GGACAGGTTTTATTTTTTCT+AGG + Chr1:1287028-1287047 None:intergenic 30.0%
!!! GGCCTTATTTTTAGAGAAAA+TGG - Chr1:1288465-1288484 MsG0180000088.01.T01:intron 30.0%
!!! GTGCATGATTTTTTACCTTT+AGG + Chr1:1287049-1287068 None:intergenic 30.0%
!!! TGATTTTTTACCTTTAGGAC+AGG + Chr1:1287044-1287063 None:intergenic 30.0%
!!! TGCATAGTTTTTCAAGGTTT+TGG + Chr1:1289471-1289490 None:intergenic 30.0%
AAAGAGGACCCTCTTATAAT+TGG - Chr1:1286156-1286175 MsG0180000088.01.T01:CDS 35.0%
AACATGTGGAGATAAATCGA+GGG + Chr1:1288493-1288512 None:intergenic 35.0%
ACTACTACAAAAACTGGAGA+TGG - Chr1:1290061-1290080 MsG0180000088.01.T01:CDS 35.0%
AGACACTAGAGAAAACCAAA+AGG - Chr1:1286664-1286683 MsG0180000088.01.T01:CDS 35.0%
AGACATTACAGAATTCTCTC+AGG - Chr1:1289365-1289384 MsG0180000088.01.T01:intron 35.0%
AGATATCTGAGAAAGTTCCA+TGG - Chr1:1288649-1288668 MsG0180000088.01.T01:intron 35.0%
AGTCAATAGAACCAAAAGGA+TGG - Chr1:1289617-1289636 MsG0180000088.01.T01:CDS 35.0%
ATACTGAATCTCGATGATTC+AGG - Chr1:1288837-1288856 MsG0180000088.01.T01:intron 35.0%
ATGTATCTTCAAGAAGATGC+AGG - Chr1:1290222-1290241 MsG0180000088.01.T01:CDS 35.0%
CAACAAGGAATGAAAGATAC+TGG - Chr1:1288885-1288904 MsG0180000088.01.T01:intron 35.0%
CCCAAACATAGTGTAAATGA+TGG - Chr1:1286242-1286261 MsG0180000088.01.T01:CDS 35.0%
CTGCACTGTTAAATTCAGTT+TGG + Chr1:1286739-1286758 None:intergenic 35.0%
GAAACTCAATGATGCTACAA+TGG - Chr1:1288042-1288061 MsG0180000088.01.T01:CDS 35.0%
GAAAGCTCAAGAACAAAAAG+AGG - Chr1:1286140-1286159 MsG0180000088.01.T01:CDS 35.0%
GAATCTGAATCTGATTCTAC+TGG + Chr1:1287178-1287197 None:intergenic 35.0%
GATAGAATCCAAGGTAGAAT+TGG - Chr1:1286878-1286897 MsG0180000088.01.T01:CDS 35.0%
GATGATGATTCAAAAGACGA+CGG - Chr1:1286083-1286102 MsG0180000088.01.T01:CDS 35.0%
GCAGTAATTACCCTGAAATT+TGG + Chr1:1290534-1290553 None:intergenic 35.0%
GCCATTTGTATGTAACTTTG+TGG + Chr1:1289854-1289873 None:intergenic 35.0%
GGACATGAAAAAGCTGTTAA+AGG + Chr1:1288188-1288207 None:intergenic 35.0%
GGCAAAAATGTCAGATACAA+AGG - Chr1:1289871-1289890 MsG0180000088.01.T01:CDS 35.0%
GTAAAAAATCATGCACATGC+TGG - Chr1:1287053-1287072 MsG0180000088.01.T01:CDS 35.0%
GTCAGATCATTCTATGATTG+TGG - Chr1:1290186-1290205 MsG0180000088.01.T01:CDS 35.0%
GTTCTTGCATCCAATTTCTA+AGG + Chr1:1286808-1286827 None:intergenic 35.0%
GTTTAAAGGATGGCAAGATA+CGG - Chr1:1286517-1286536 MsG0180000088.01.T01:CDS 35.0%
TAGTAGCTCGAAAGAGAAAT+TGG - Chr1:1288929-1288948 MsG0180000088.01.T01:intron 35.0%
TATAGTCCAGCCATCAAAAA+TGG - Chr1:1289963-1289982 MsG0180000088.01.T01:CDS 35.0%
TATCCTCCCAAATACTCTTT+AGG + Chr1:1287706-1287725 None:intergenic 35.0%
TCTGTTGGATTGTATAAGCT+GGG + Chr1:1288735-1288754 None:intergenic 35.0%
TGATGCTGATAAAACAACCT+GGG - Chr1:1288779-1288798 MsG0180000088.01.T01:intron 35.0%
TGTATGTTCAGAAGATCCTT+TGG - Chr1:1287772-1287791 MsG0180000088.01.T01:CDS 35.0%
TGTTTGGGAACATAACTCAT+AGG + Chr1:1286230-1286249 None:intergenic 35.0%
TTCAAGGAAACAAGCAAAAG+AGG - Chr1:1290581-1290600 MsG0180000088.01.T01:CDS 35.0%
TTCAATAATAGCTTCGCGAA+AGG - Chr1:1290303-1290322 MsG0180000088.01.T01:CDS 35.0%
TTCAGTATCGCTTTACCATT+AGG + Chr1:1288825-1288844 None:intergenic 35.0%
TTCGGTCTTTCAATTCATCA+GGG + Chr1:1288536-1288555 None:intergenic 35.0%
TTCTGTTGGATTGTATAAGC+TGG + Chr1:1288736-1288755 None:intergenic 35.0%
TTGATGCTGATAAAACAACC+TGG - Chr1:1288778-1288797 MsG0180000088.01.T01:intron 35.0%
TTGGAGACTACTACAAAAAC+TGG - Chr1:1290055-1290074 MsG0180000088.01.T01:CDS 35.0%
TTTAACAGTGCAGTATCTTC+AGG - Chr1:1286746-1286765 MsG0180000088.01.T01:CDS 35.0%
TTTCGGTCTTTCAATTCATC+AGG + Chr1:1288537-1288556 None:intergenic 35.0%
TTTGTTAAAGAAGTCACCGT+TGG - Chr1:1290036-1290055 MsG0180000088.01.T01:CDS 35.0%
! AAACTCTTCTTTCTGAAGAG+GGG - Chr1:1289428-1289447 MsG0180000088.01.T01:intron 35.0%
! AAGATTGATAGTCAACTTGG+AGG - Chr1:1289766-1289785 MsG0180000088.01.T01:CDS 35.0%
! AGAAACTCTTCTTTCTGAAG+AGG - Chr1:1289426-1289445 MsG0180000088.01.T01:intron 35.0%
! AGATTCAGGTTCTTCCTTAA+TGG + Chr1:1286027-1286046 None:intergenic 35.0%
! ATTATTTGGGACATTGCCAT+AGG + Chr1:1286716-1286735 None:intergenic 35.0%
! ATTTTCGATGGACCTATGAA+AGG - Chr1:1289808-1289827 MsG0180000088.01.T01:CDS 35.0%
! CATAGTGTAAATGATGGAAG+TGG - Chr1:1286248-1286267 MsG0180000088.01.T01:CDS 35.0%
! GAAACTCTTCTTTCTGAAGA+GGG - Chr1:1289427-1289446 MsG0180000088.01.T01:intron 35.0%
! GTCGTCTTTTGAATCATCAT+CGG + Chr1:1286084-1286103 None:intergenic 35.0%
! GTTGAAGATTTCCATCCTTT+TGG + Chr1:1289631-1289650 None:intergenic 35.0%
! GTTTTTGTAGTAGTCTCCAA+CGG + Chr1:1290055-1290074 None:intergenic 35.0%
!! AAACCTAAAGAGTATTTGGG+AGG - Chr1:1287700-1287719 MsG0180000088.01.T01:CDS 35.0%
!! ATTCCATTGGTAATGACTTG+TGG + Chr1:1288209-1288228 None:intergenic 35.0%
!! GAAAGGTATCTACCAAAACT+GGG - Chr1:1289825-1289844 MsG0180000088.01.T01:CDS 35.0%
!! TGAAAGGTATCTACCAAAAC+TGG - Chr1:1289824-1289843 MsG0180000088.01.T01:CDS 35.0%
!! TGTTTTTATCCCAGCAACAA+CGG - Chr1:1290117-1290136 MsG0180000088.01.T01:CDS 35.0%
!!! TTCTAGACGATTTTTTGCAG+AGG + Chr1:1289410-1289429 None:intergenic 35.0%
AAATCTGCAAGGACAGTTGT+TGG + Chr1:1289658-1289677 None:intergenic 40.0%
AATCTGCAAGGACAGTTGTT+GGG + Chr1:1289657-1289676 None:intergenic 40.0%
AGCTTACAACGCTGTTTACA+AGG - Chr1:1289921-1289940 MsG0180000088.01.T01:CDS 40.0%
CAAGGTAGAATTGGAGCATA+TGG - Chr1:1286887-1286906 MsG0180000088.01.T01:CDS 40.0%
CAATATATGGGTGAAACGGT+TGG + Chr1:1289280-1289299 None:intergenic 40.0%
CATATGCTCCAATTCTACCT+TGG + Chr1:1286889-1286908 None:intergenic 40.0%
CGATTTATCTCCACATGTTC+AGG - Chr1:1288494-1288513 MsG0180000088.01.T01:intron 40.0%
GAACATGTGGAGATAAATCG+AGG + Chr1:1288494-1288513 None:intergenic 40.0%
GATGATGTAACCCATCAACA+AGG - Chr1:1288870-1288889 MsG0180000088.01.T01:intron 40.0%
GCCAATCTTGATTAAGTGTC+TGG + Chr1:1290394-1290413 None:intergenic 40.0%
GCCAGACACTTAATCAAGAT+TGG - Chr1:1290390-1290409 MsG0180000088.01.T01:CDS 40.0%
TAGCTCAAGCCATAAGAAGT+TGG - Chr1:1286300-1286319 MsG0180000088.01.T01:CDS 40.0%
TCAAAAAGAGACGCACGAAT+AGG - Chr1:1286845-1286864 MsG0180000088.01.T01:CDS 40.0%
TCAATTCATCAGGGAAAGCT+TGG + Chr1:1288527-1288546 None:intergenic 40.0%
TGCAGAAAACATTCTGGTCT+TGG + Chr1:1290462-1290481 None:intergenic 40.0%
TGTATGAGAGCTCTACCTAA+TGG - Chr1:1288807-1288826 MsG0180000088.01.T01:intron 40.0%
TGTCCACAAGTCATTACCAA+TGG - Chr1:1288203-1288222 MsG0180000088.01.T01:CDS 40.0%
TGTTGCGCCTGTATCTAAAT+AGG + Chr1:1287330-1287349 None:intergenic 40.0%
TTGTGCTGTGATAGAATCCA+AGG - Chr1:1286869-1286888 MsG0180000088.01.T01:CDS 40.0%
! AACTCTTCTTTCTGAAGAGG+GGG - Chr1:1289429-1289448 MsG0180000088.01.T01:intron 40.0%
! ACAGGCGCAACATTATGTTT+TGG - Chr1:1287338-1287357 MsG0180000088.01.T01:CDS 40.0%
! ACTTTGTGGTTTCCCAGTTT+TGG + Chr1:1289840-1289859 None:intergenic 40.0%
! CAGATGCATTGACAAGAGAA+TGG - Chr1:1289330-1289349 MsG0180000088.01.T01:intron 40.0%
! GCGATTTCGCCTATATCTTT+TGG + Chr1:1290276-1290295 None:intergenic 40.0%
! GTTTTTATCCCAGCAACAAC+GGG - Chr1:1290118-1290137 MsG0180000088.01.T01:CDS 40.0%
! TGCTGGTTATGTCATGAAAC+AGG - Chr1:1287070-1287089 MsG0180000088.01.T01:CDS 40.0%
! TGGATCTTTTCCTGAACATG+TGG + Chr1:1288507-1288526 None:intergenic 40.0%
! TTATCGGCCCAAGATGTTTT+TGG + Chr1:1289682-1289701 None:intergenic 40.0%
!! TAGTCTCCATTTTTGATGGC+TGG + Chr1:1289972-1289991 None:intergenic 40.0%
!!! CTTGTTTTAGTCCAAACGGA+AGG + Chr1:1288234-1288253 None:intergenic 40.0%
!!! GGTGCTTGTTTTAGTCCAAA+CGG + Chr1:1288238-1288257 None:intergenic 40.0%
AAGCTGCCTTTGCTTCTTCA+AGG + Chr1:1289906-1289925 None:intergenic 45.0%
ACAAAGGACACCAATGCAAG+TGG - Chr1:1290715-1290734 MsG0180000088.01.T01:CDS 45.0%
ACTAACTCTTTGCTTACGCC+TGG + Chr1:1290168-1290187 None:intergenic 45.0%
ACTGAAAACTGGGATCTGCT+AGG - Chr1:1289526-1289545 MsG0180000088.01.T01:intron 45.0%
ACTTCATCGTCTTCGAACCA+TGG + Chr1:1290363-1290382 None:intergenic 45.0%
ACTTCTATCCCGTTGTTGCT+GGG + Chr1:1290129-1290148 None:intergenic 45.0%
AGCTACTAGACTTAGCGTAC+TGG + Chr1:1288917-1288936 None:intergenic 45.0%
AGCTGCCTTTGCTTCTTCAA+GGG + Chr1:1289905-1289924 None:intergenic 45.0%
CAAACGGAAGGACATTCCAT+TGG + Chr1:1288222-1288241 None:intergenic 45.0%
CAATGGAATGTCCTTCCGTT+TGG - Chr1:1288220-1288239 MsG0180000088.01.T01:CDS 45.0%
CAGTGCAGTATCTTCAGGAA+AGG - Chr1:1286751-1286770 MsG0180000088.01.T01:CDS 45.0%
CTAACTCTTTGCTTACGCCT+GGG + Chr1:1290167-1290186 None:intergenic 45.0%
CTGAGAAAGTTCCATGGTCA+TGG - Chr1:1288655-1288674 MsG0180000088.01.T01:intron 45.0%
GAATTCTCTCAGGCAAAAGC+AGG - Chr1:1289375-1289394 MsG0180000088.01.T01:intron 45.0%
GATCTGCTAGGTCAAGATTC+TGG - Chr1:1289538-1289557 MsG0180000088.01.T01:intron 45.0%
GCTACTAGACTTAGCGTACT+GGG + Chr1:1288916-1288935 None:intergenic 45.0%
GTAAAAGCTGTAACAGTCCC+AGG - Chr1:1290147-1290166 MsG0180000088.01.T01:CDS 45.0%
TACTTCTATCCCGTTGTTGC+TGG + Chr1:1290130-1290149 None:intergenic 45.0%
TCTTGTTCAGTCCATGACCA+TGG + Chr1:1288669-1288688 None:intergenic 45.0%
TGAGACCCTTGAAGAAGCAA+AGG - Chr1:1289897-1289916 MsG0180000088.01.T01:CDS 45.0%
TTTAGCTGAGAAACCTGACG+AGG - Chr1:1286433-1286452 MsG0180000088.01.T01:CDS 45.0%
! CTTTTGCACACCACTTGCAT+TGG + Chr1:1290728-1290747 None:intergenic 45.0%
!! TAAAAAGCGGGTGCTGAATG+TGG + Chr1:1287965-1287984 None:intergenic 45.0%
!!! ATTTTATATATTCAATATAT+GGG + Chr1:1289292-1289311 None:intergenic 5.0%
GCTGAATGTGGACTTGCAGA+TGG + Chr1:1287953-1287972 None:intergenic 50.0%
GCTGATAAAACAACCTGGGC+AGG - Chr1:1288783-1288802 MsG0180000088.01.T01:intron 50.0%
! AGTGGGCTTGAAGCAGACTT+GGG - Chr1:1290642-1290661 MsG0180000088.01.T01:CDS 50.0%
! TCTGCAGTTTGTTCCTCGTC+AGG + Chr1:1286449-1286468 None:intergenic 50.0%
!! TAGTGGGCTTGAAGCAGACT+TGG - Chr1:1290641-1290660 MsG0180000088.01.T01:CDS 50.0%
AGCTCTCATACAACCTGCCC+AGG + Chr1:1288799-1288818 None:intergenic 55.0%
GGCAGCACTCCTGTTGGATT+GGG + Chr1:1290680-1290699 None:intergenic 55.0%
TCTACCCGACCCAATCCAAC+AGG - Chr1:1290668-1290687 MsG0180000088.01.T01:CDS 55.0%
! CACTCCTGTTGGATTGGGTC+GGG + Chr1:1290675-1290694 None:intergenic 55.0%
! GCACTCCTGTTGGATTGGGT+CGG + Chr1:1290676-1290695 None:intergenic 55.0%
! GTTGGATTGGGTCGGGTAGA+CGG + Chr1:1290668-1290687 None:intergenic 55.0%
CGGCAGCACTCCTGTTGGAT+TGG + Chr1:1290681-1290700 None:intergenic 60.0%
!! AGTGTCGGCAGCACTCCTGT+TGG + Chr1:1290686-1290705 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 1285993 1290827 1285993 ID=MsG0180000088.01;Name=MsG0180000088.01
Chr1 mRNA 1285993 1290827 1285993 ID=MsG0180000088.01.T01;Parent=MsG0180000088.01;Name=MsG0180000088.01.T01;_AED=0.38;_eAED=0.79;_QI=0|0|0|1|1|1|3|0|1167
Chr1 exon 1289554 1290827 1289554 ID=MsG0180000088.01.T01:exon:7352;Parent=MsG0180000088.01.T01
Chr1 exon 1287564 1288341 1287564 ID=MsG0180000088.01.T01:exon:7353;Parent=MsG0180000088.01.T01
Chr1 exon 1285993 1287444 1285993 ID=MsG0180000088.01.T01:exon:7354;Parent=MsG0180000088.01.T01
Chr1 CDS 1289554 1290827 1289554 ID=MsG0180000088.01.T01:cds;Parent=MsG0180000088.01.T01
Chr1 CDS 1287564 1288341 1287564 ID=MsG0180000088.01.T01:cds;Parent=MsG0180000088.01.T01
Chr1 CDS 1285993 1287444 1285993 ID=MsG0180000088.01.T01:cds;Parent=MsG0180000088.01.T01
Gene Sequence

>MsG0180000088.01.T01

ATGGCTACTTTAGACATAAGTGAAAAAGAATCCATTAAGGAAGAACCTGAATCTAAAGATCTAGAAGATATTATCTACGACTTTAGTTCCGATGATGATTCAAAAGACGACGGAAATTTCGTTAAAATAGAACAATTAGAAATGGGCGAAAGCTCAAGAACAAAAAGAGGACCCTCTTATAATTGGAATACAGAATTCCATAGAGAATTTTCTCAAGCTAAATTCCAAAGAATTCCTATGAGTTATGTTCCCAAACATAGTGTAAATGATGGAAGTGGAATTCTAAACATTGATTGTGTTGACAATCTAGCTCAAGCCATAAGAAGTTGGTATAATAAAAACATTATCCAAATACAGCTAGATAGTGATTTAAAAAATCTAACTCCAAAACAGATTTTTAATTATCTTTTGTGTAGAACAGAAGGTAATGCATATAAATTTTTAGCTGAGAAACCTGACGAGGAACAAACTGCAGAAAATAGTATCGGAATGATTAATAAAGTCTTTGAATGGCTTTTAAATGAGTTTAAAGGATGGCAAGATACGGTAGACTCAAATGTCGCTTTTAATGCCGAAAAATTATGGAGAATAATGAATCTATCCATATGTAATCCTTGTTACATAGAAAATTATATTTGTGAATTCTCACAATTATATTATGATCTAAACAAAGACACTAGAGAAAACCAAAAGGTTGTCGAATTATTTTACCAAAAATTACCTATGGCAATGTCCCAAATAATCCAAACTGAATTTAACAGTGCAGTATCTTCAGGAAAGGTTAAAGATACTTTAGGAGCTAGAATTTCTATCCTTAGAAATTGGATGCAAGAACAATGCCTAAAGAAACAATCAAAAAGAGACGCACGAATAGGATTGTGCTGTGATAGAATCCAAGGTAGAATTGGAGCATATGGTTGTGAAAAAACTAGGAGAAAAAGAAAATACCCTAGAAGAAAGAAATTTAAGAAATTTTCCTATGACAAAAAGAAACATAGGAAGAAAAGATTCTATAGAAAAAAGAGGGAGTATCCTAGAAAAAATAAAACCTGTCCTAAAGGTAAAAAATCATGCACATGCTGGTTATGTCATGAAACAGGACATTATGCGAATGAATGTCCAAAGAAAGTTTCTAAAGAAAAGAAACAAGTTTTAAACATGATCTATAGAATAGGTTATGAACCAGTAGAATCAGATTCAGATTCTGATTGGGAGCAACAAAGTTTCTATGAACTCTGCACAGATTCCGAAGATGAGCAAAACCAAAATTTTGAAGAAAATGGCACCCTCGATTTATCTCCACATGTTCAGGAAAAGATCCAAGCTTTCCCTGATGAATTGAAAGACCGAAAACAAATTCAAAGATTTTTAGGATGTTTGAATTATATTGCCAATGAAGGATTTTTCAAAAATTTGGCAACTGAAAGAAAGATTTTACAGAAAAAGATATCTGAGAAAGTTCCATGGTCATGGACTGAACAAGATACTCTAACTGTAAAAACTATTAAAAGAAAAATTAAGGTTTTACCCAGCTTATACAATCCAACAGAAAATGATTTTTTAATTGTTGAGATTGATGCTGATAAAACAACCTGGGCAGGTTGTATGAGAGCTCTACCTAATGGTAAAGCGATACTGAATCTCGATGATTCAGGAAACTATGTTGATGATGTAACCCATCAACAAGGAATGAAAGATACTGGAGCAACCCAGTACGCTAAGTCTAGTAGCTCGAAAGAGAAATTGGACAAACTATCTGATTCATCAGAAAGATTAGTATCAAAAGATACTAAGATTGATTATTCTTATGAAAATATTAAAAATAAGATAAAAGATGAAGATCTTTTACTTTGTAAATATGTTTCAGGATCATTTACAGATACCGAAACAAGATATCCAATTCATGAATTAGAAACATTGAGTTGTGTTAAAGTTTTAACAAAATGGCAAATGGAATTAATTCCAACCAGATTTTTATTAAGAACAGATTCCAAATATGTAACTGGATTTTGGAAATATGACCTTCGCGTCAATTATAAATATGGAAGACTTAATTCTCTCAGGCAAAAGCAGGAGCAAATTGCCTCTGCAAAAAATCGTCTAGAAACTCTTCTTTCTGAAGAGGGGGAGATGATATTAACAATCCAAAACCTTGAAAAACTATGCAAAAAAGAAACATCAATAGTTTCAGAATCCAAAAATACTGAAAACTGGGATCTGCTAGGTCAAGATTCTGGAAAATTCAACTACTATGTAAAATACTCAGCTCCAAAAGAGTCAAATATCCCAATTGAGTCAATAGAACCAAAAGGATGGAAATCTTCAACAAACCCAACAACTGTCCTTGCAGATTTACCAAAAACATCTTGGGCCGATAAAGTCGAAGAAGAAGAAAGAAAAAATGGAAAAGAAAAAGAATCCATTGATCAACAAACAAGTCAAAAGATTGATAGTCAACTTGGAGGCAAAAAGAAAGCTTATGTGATTTTCGATGGACCTATGAAAGGTATCTACCAAAACTGGGAAACCACAAAGTTACATACAAATGGCAAAAATGTCAGATACAAAGGCTATGAGACCCTTGAAGAAGCAAAGGCAGCTTACAACGCTGTTTACAAGGAAGTTACAATAGCAAGCAATATAGTCCAGCCATCAAAAATGGAGACTAAGAAGAAAATATCTGTAGATAGAATTATCTATGGAGAAAGCAAATTTGTTAAAGAAGTCACCGTTGGAGACTACTACAAAAACTGGAGATGGTTAACCAACTACTCAGAAGAGTTAAAAACAGAATGTTTTTATCCCAGCAACAACGGGATAGAAGTAAAAGCTGTAACAGTCCCAGGCGTAAGCAAAGAGTTAGTCAGATCATTCTATGATTGTGGAATGATTAAAACAATGTATCTTCAAGAAGATGCAGGAAGAAAAATTCATGAACTAGAACTTCTTCCAAAAGATATAGGCGAAATCGCTTATAAATTCAATAATAGCTTCGCGAAAGGTAAAGAGTTCTTTTTATCTTTTACTTCAACTTATCCATGGTTCGAAGACGATGAAGTTATTAAAGCCAGACACTTAATCAAGATTGGCATTTCAAATCATTCATATCCAACAAATGATGGAAGAAATGTAGATCCAAGACCAGAATGTTTTCTGCATCAAATGGAAAAATTCTACGATACTCTCATTAGATTTGGAGTAAAATTACCAAATTTCAGGGTAATTACTGCAAAAGAAAGTTTTCTAGTCTATAGTGATTCAAGGAAACAAGCAAAAGAGGAGCATCTTCAGCAAATCCTAAAGTTTGAAAAAAACTTTAGTGGGCTTGAAGCAGACTTGGGCCGTCTACCCGACCCAATCCAACAGGAGTGCTGCCGACACTTTCAAAAATACAAAGGACACCAATGCAAGTGGTGTGCAAAAGACATAAATAACGTGGCAGACAAAGAATCGTTGTATGACAGTGACGTTTCACCAAACAACGAAGAAAATGTAGAAAATTAG
Protein sequence

>MsG0180000088.01.T01

MATLDISEKESIKEEPESKDLEDIIYDFSSDDDSKDDGNFVKIEQLEMGESSRTKRGPSYNWNTEFHREFSQAKFQRIPMSYVPKHSVNDGSGILNIDCVDNLAQAIRSWYNKNIIQIQLDSDLKNLTPKQIFNYLLCRTEGNAYKFLAEKPDEEQTAENSIGMINKVFEWLLNEFKGWQDTVDSNVAFNAEKLWRIMNLSICNPCYIENYICEFSQLYYDLNKDTRENQKVVELFYQKLPMAMSQIIQTEFNSAVSSGKVKDTLGARISILRNWMQEQCLKKQSKRDARIGLCCDRIQGRIGAYGCEKTRRKRKYPRRKKFKKFSYDKKKHRKKRFYRKKREYPRKNKTCPKGKKSCTCWLCHETGHYANECPKKVSKEKKQVLNMIYRIGYEPVESDSDSDWEQQSFYELCTDSEDEQNQNFEENGTLDLSPHVQEKIQAFPDELKDRKQIQRFLGCLNYIANEGFFKNLATERKILQKKISEKVPWSWTEQDTLTVKTIKRKIKVLPSLYNPTENDFLIVEIDADKTTWAGCMRALPNGKAILNLDDSGNYVDDVTHQQGMKDTGATQYAKSSSSKEKLDKLSDSSERLVSKDTKIDYSYENIKNKIKDEDLLLCKYVSGSFTDTETRYPIHELETLSCVKVLTKWQMELIPTRFLLRTDSKYVTGFWKYDLRVNYKYGRLNSLRQKQEQIASAKNRLETLLSEEGEMILTIQNLEKLCKKETSIVSESKNTENWDLLGQDSGKFNYYVKYSAPKESNIPIESIEPKGWKSSTNPTTVLADLPKTSWADKVEEEERKNGKEKESIDQQTSQKIDSQLGGKKKAYVIFDGPMKGIYQNWETTKLHTNGKNVRYKGYETLEEAKAAYNAVYKEVTIASNIVQPSKMETKKKISVDRIIYGESKFVKEVTVGDYYKNWRWLTNYSEELKTECFYPSNNGIEVKAVTVPGVSKELVRSFYDCGMIKTMYLQEDAGRKIHELELLPKDIGEIAYKFNNSFAKGKEFFLSFTSTYPWFEDDEVIKARHLIKIGISNHSYPTNDGRNVDPRPECFLHQMEKFYDTLIRFGVKLPNFRVITAKESFLVYSDSRKQAKEEHLQQILKFEKNFSGLEADLGRLPDPIQQECCRHFQKYKGHQCKWCAKDINNVADKESLYDSDVSPNNEENVEN*