Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000110.01.T01 | XP_003589348.2 | 94.961 | 258 | 9 | 1 | 1 | 254 | 1 | 258 | 1.70E-178 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000110.01.T01 | P25804 | 85.656 | 244 | 28 | 2 | 15 | 254 | 15 | 255 | 7.02E-154 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000110.01.T01 | A0A396JH07 | 94.961 | 258 | 9 | 1 | 1 | 254 | 1 | 258 | 8.14e-179 | 505 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000109.01 | MsG0180000110.01 | 0.906175 | 1.963216e-80 | 3.285935e-76 |
| MsG0180000110.01 | MsG0180000383.01 | 0.819095 | 1.390010e-52 | 1.059526e-49 |
| MsG0180000110.01 | MsG0380016242.01 | 0.819361 | 1.209216e-52 | 9.284651e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000110.01.T01 | MTR_1g023210 | 94.961 | 258 | 9 | 1 | 1 | 254 | 1 | 258 | 0.0 | 505 |
| MsG0180000110.01.T01 | MTR_4g071060 | 64.122 | 262 | 79 | 6 | 1 | 254 | 1 | 255 | 4.64e-112 | 327 |
| MsG0180000110.01.T01 | MTR_1g094135 | 48.062 | 258 | 116 | 5 | 7 | 254 | 15 | 264 | 8.15e-80 | 245 |
| MsG0180000110.01.T01 | MTR_4g072790 | 51.200 | 250 | 76 | 7 | 8 | 252 | 13 | 221 | 1.95e-71 | 222 |
| MsG0180000110.01.T01 | MTR_4g073660 | 49.004 | 251 | 84 | 7 | 8 | 254 | 12 | 222 | 1.87e-68 | 214 |
| MsG0180000110.01.T01 | MTR_4g072340 | 48.289 | 263 | 87 | 9 | 1 | 254 | 1 | 223 | 1.95e-68 | 214 |
| MsG0180000110.01.T01 | MTR_1g107550 | 42.342 | 222 | 107 | 6 | 41 | 252 | 43 | 253 | 9.59e-47 | 162 |
| MsG0180000110.01.T01 | MTR_1g018840 | 44.974 | 189 | 86 | 4 | 57 | 235 | 61 | 241 | 2.11e-44 | 155 |
| MsG0180000110.01.T01 | MTR_1g018840 | 44.974 | 189 | 86 | 4 | 57 | 235 | 61 | 241 | 3.54e-44 | 155 |
| MsG0180000110.01.T01 | MTR_4g079440 | 38.164 | 207 | 114 | 4 | 51 | 252 | 46 | 243 | 4.26e-44 | 152 |
| MsG0180000110.01.T01 | MTR_3g116080 | 41.753 | 194 | 100 | 3 | 51 | 239 | 47 | 232 | 7.94e-44 | 151 |
| MsG0180000110.01.T01 | MTR_4g125300 | 40.000 | 250 | 123 | 8 | 9 | 246 | 7 | 241 | 1.32e-42 | 148 |
| MsG0180000110.01.T01 | MTR_3g102220 | 35.769 | 260 | 142 | 7 | 5 | 252 | 13 | 259 | 9.35e-42 | 149 |
| MsG0180000110.01.T01 | MTR_4g094918 | 42.105 | 190 | 90 | 4 | 57 | 235 | 41 | 221 | 1.14e-41 | 146 |
| MsG0180000110.01.T01 | MTR_2g090890 | 38.974 | 195 | 105 | 3 | 51 | 241 | 39 | 223 | 5.89e-41 | 144 |
| MsG0180000110.01.T01 | MTR_3g075390 | 42.246 | 187 | 91 | 4 | 67 | 244 | 55 | 233 | 1.01e-40 | 144 |
| MsG0180000110.01.T01 | MTR_4g080730 | 40.000 | 210 | 105 | 6 | 54 | 254 | 43 | 240 | 1.34e-39 | 140 |
| MsG0180000110.01.T01 | MTR_5g022560 | 37.611 | 226 | 113 | 6 | 33 | 245 | 23 | 233 | 1.60e-39 | 140 |
| MsG0180000110.01.T01 | MTR_2g015850 | 38.428 | 229 | 121 | 8 | 31 | 249 | 41 | 259 | 4.32e-39 | 139 |
| MsG0180000110.01.T01 | MTR_4g047610 | 38.916 | 203 | 100 | 6 | 54 | 244 | 41 | 231 | 7.98e-39 | 138 |
| MsG0180000110.01.T01 | MTR_3g112430 | 40.299 | 201 | 102 | 5 | 51 | 241 | 36 | 228 | 9.82e-39 | 140 |
| MsG0180000110.01.T01 | MTR_4g079770 | 35.659 | 258 | 121 | 9 | 1 | 244 | 7 | 233 | 1.01e-38 | 138 |
| MsG0180000110.01.T01 | MTR_4g080700 | 37.900 | 219 | 115 | 6 | 45 | 254 | 34 | 240 | 3.89e-38 | 136 |
| MsG0180000110.01.T01 | MTR_4g079470 | 36.364 | 242 | 112 | 8 | 14 | 244 | 23 | 233 | 5.05e-38 | 136 |
| MsG0180000110.01.T01 | MTR_4g104370 | 42.391 | 184 | 86 | 6 | 66 | 239 | 54 | 227 | 6.55e-38 | 136 |
| MsG0180000110.01.T01 | MTR_4g065077 | 37.089 | 213 | 112 | 8 | 51 | 252 | 51 | 252 | 6.94e-38 | 136 |
| MsG0180000110.01.T01 | MTR_4g107930 | 39.706 | 204 | 99 | 6 | 54 | 245 | 43 | 234 | 9.92e-38 | 135 |
| MsG0180000110.01.T01 | MTR_2g016180 | 36.321 | 212 | 117 | 6 | 51 | 253 | 51 | 253 | 2.17e-37 | 137 |
| MsG0180000110.01.T01 | MTR_2g075830 | 39.698 | 199 | 99 | 6 | 60 | 250 | 48 | 233 | 3.79e-37 | 134 |
| MsG0180000110.01.T01 | MTR_4g079800 | 37.327 | 217 | 111 | 7 | 41 | 246 | 33 | 235 | 5.82e-37 | 133 |
| MsG0180000110.01.T01 | MTR_4g080360 | 33.591 | 259 | 139 | 8 | 3 | 252 | 5 | 239 | 9.87e-37 | 132 |
| MsG0180000110.01.T01 | MTR_2g016270 | 35.545 | 211 | 105 | 6 | 51 | 253 | 51 | 238 | 9.16e-36 | 132 |
| MsG0180000110.01.T01 | MTR_2g083930 | 37.143 | 210 | 105 | 8 | 44 | 239 | 31 | 227 | 2.49e-34 | 126 |
| MsG0180000110.01.T01 | MTR_8g086470 | 35.071 | 211 | 103 | 7 | 51 | 252 | 67 | 252 | 3.98e-34 | 126 |
| MsG0180000110.01.T01 | MTR_2g015920 | 33.503 | 197 | 108 | 5 | 51 | 236 | 53 | 237 | 1.00e-31 | 120 |
| MsG0180000110.01.T01 | MTR_2g015930 | 34.328 | 201 | 102 | 5 | 51 | 236 | 52 | 237 | 1.32e-30 | 117 |
| MsG0180000110.01.T01 | MTR_7g079230 | 34.343 | 198 | 115 | 4 | 42 | 234 | 30 | 217 | 3.56e-29 | 112 |
| MsG0180000110.01.T01 | MTR_7g078600 | 34.328 | 201 | 115 | 5 | 42 | 236 | 33 | 222 | 5.80e-28 | 109 |
| MsG0180000110.01.T01 | MTR_2g067560 | 32.589 | 224 | 123 | 8 | 48 | 253 | 13 | 226 | 5.93e-26 | 106 |
| MsG0180000110.01.T01 | MTR_8g087510 | 58.025 | 81 | 25 | 1 | 172 | 252 | 23 | 94 | 7.15e-26 | 100 |
| MsG0180000110.01.T01 | MTR_2g067900 | 30.180 | 222 | 131 | 6 | 45 | 252 | 10 | 221 | 3.61e-23 | 96.3 |
| MsG0180000110.01.T01 | MTR_2g064475 | 27.843 | 255 | 123 | 9 | 45 | 252 | 10 | 250 | 2.47e-21 | 91.7 |
| MsG0180000110.01.T01 | MTR_1g023810 | 45.536 | 112 | 46 | 3 | 133 | 238 | 47 | 149 | 1.74e-19 | 85.5 |
| MsG0180000110.01.T01 | MTR_7g078630 | 31.604 | 212 | 96 | 7 | 40 | 236 | 698 | 875 | 2.93e-19 | 87.4 |
| MsG0180000110.01.T01 | MTR_2g066980 | 30.808 | 198 | 93 | 7 | 58 | 235 | 41 | 214 | 2.76e-18 | 82.8 |
| MsG0180000110.01.T01 | MTR_1g025450 | 42.478 | 113 | 49 | 3 | 133 | 238 | 53 | 156 | 6.31e-18 | 83.2 |
| MsG0180000110.01.T01 | MTR_2g047960 | 44.565 | 92 | 39 | 2 | 139 | 226 | 2 | 85 | 2.49e-15 | 70.1 |
| MsG0180000110.01.T01 | MTR_2g015840 | 28.235 | 170 | 94 | 5 | 5 | 166 | 7 | 156 | 7.02e-14 | 70.1 |
| MsG0180000110.01.T01 | MTR_7g078310 | 37.864 | 103 | 51 | 3 | 134 | 230 | 151 | 246 | 1.51e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000110.01.T01 | AT4G39090 | 69.068 | 236 | 68 | 2 | 24 | 254 | 24 | 259 | 2.14e-118 | 343 |
| MsG0180000110.01.T01 | AT2G21430 | 64.940 | 251 | 75 | 3 | 9 | 254 | 14 | 256 | 3.31e-117 | 340 |
| MsG0180000110.01.T01 | AT4G16190 | 62.041 | 245 | 86 | 4 | 5 | 242 | 8 | 252 | 4.60e-102 | 301 |
| MsG0180000110.01.T01 | AT3G54940 | 45.833 | 264 | 119 | 5 | 4 | 254 | 8 | 260 | 3.10e-82 | 248 |
| MsG0180000110.01.T01 | AT3G54940 | 45.833 | 264 | 119 | 5 | 4 | 254 | 8 | 260 | 8.06e-81 | 247 |
| MsG0180000110.01.T01 | AT1G06260 | 43.500 | 200 | 98 | 5 | 48 | 241 | 40 | 230 | 5.71e-48 | 162 |
| MsG0180000110.01.T01 | AT4G35350 | 40.826 | 218 | 108 | 5 | 36 | 242 | 33 | 240 | 1.15e-46 | 157 |
| MsG0180000110.01.T01 | AT4G36880 | 43.719 | 199 | 91 | 6 | 67 | 252 | 69 | 259 | 3.76e-46 | 158 |
| MsG0180000110.01.T01 | AT5G60360 | 41.778 | 225 | 115 | 4 | 37 | 254 | 42 | 257 | 5.51e-46 | 157 |
| MsG0180000110.01.T01 | AT5G60360 | 41.778 | 225 | 115 | 4 | 37 | 254 | 42 | 257 | 7.27e-46 | 157 |
| MsG0180000110.01.T01 | AT5G60360 | 41.778 | 225 | 115 | 4 | 37 | 254 | 42 | 257 | 7.38e-46 | 157 |
| MsG0180000110.01.T01 | AT4G35350 | 40.826 | 218 | 108 | 5 | 36 | 242 | 33 | 240 | 2.59e-45 | 155 |
| MsG0180000110.01.T01 | AT1G47128 | 43.655 | 197 | 87 | 5 | 67 | 252 | 68 | 251 | 3.94e-45 | 157 |
| MsG0180000110.01.T01 | AT3G45310 | 39.147 | 258 | 136 | 7 | 7 | 254 | 11 | 257 | 4.16e-45 | 155 |
| MsG0180000110.01.T01 | AT3G45310 | 39.147 | 258 | 136 | 7 | 7 | 254 | 11 | 257 | 4.62e-45 | 155 |
| MsG0180000110.01.T01 | AT1G20850 | 43.147 | 197 | 95 | 4 | 51 | 239 | 51 | 238 | 1.65e-44 | 153 |
| MsG0180000110.01.T01 | AT5G43060 | 44.324 | 185 | 90 | 3 | 55 | 235 | 59 | 234 | 7.57e-44 | 154 |
| MsG0180000110.01.T01 | AT3G43960 | 43.204 | 206 | 98 | 7 | 60 | 254 | 50 | 247 | 1.72e-43 | 151 |
| MsG0180000110.01.T01 | AT3G19390 | 44.385 | 187 | 89 | 5 | 60 | 239 | 52 | 230 | 3.78e-43 | 152 |
| MsG0180000110.01.T01 | AT3G19400 | 42.021 | 188 | 95 | 5 | 60 | 240 | 53 | 233 | 4.05e-43 | 148 |
| MsG0180000110.01.T01 | AT3G48340 | 39.906 | 213 | 106 | 5 | 41 | 239 | 24 | 228 | 2.57e-42 | 148 |
| MsG0180000110.01.T01 | AT1G09850 | 42.132 | 197 | 100 | 4 | 51 | 241 | 32 | 220 | 4.32e-42 | 149 |
| MsG0180000110.01.T01 | AT3G19400 | 42.021 | 188 | 95 | 5 | 60 | 240 | 53 | 233 | 9.97e-42 | 146 |
| MsG0180000110.01.T01 | AT5G50260 | 45.902 | 183 | 82 | 4 | 66 | 239 | 52 | 226 | 4.42e-41 | 144 |
| MsG0180000110.01.T01 | AT1G29090 | 38.532 | 218 | 112 | 6 | 47 | 252 | 44 | 251 | 4.92e-41 | 144 |
| MsG0180000110.01.T01 | AT4G23520 | 42.289 | 201 | 100 | 5 | 47 | 240 | 43 | 234 | 1.37e-40 | 143 |
| MsG0180000110.01.T01 | AT5G45890 | 37.200 | 250 | 116 | 10 | 7 | 240 | 6 | 230 | 2.01e-40 | 142 |
| MsG0180000110.01.T01 | AT2G34080 | 37.619 | 210 | 111 | 5 | 54 | 252 | 42 | 242 | 1.75e-38 | 137 |
| MsG0180000110.01.T01 | AT3G48350 | 42.105 | 171 | 82 | 4 | 71 | 232 | 57 | 219 | 7.54e-36 | 129 |
| MsG0180000110.01.T01 | AT3G48350 | 42.105 | 171 | 82 | 4 | 71 | 232 | 57 | 219 | 9.79e-35 | 128 |
| MsG0180000110.01.T01 | AT2G27420 | 37.879 | 198 | 82 | 7 | 54 | 228 | 38 | 217 | 3.97e-34 | 126 |
| MsG0180000110.01.T01 | AT4G11310 | 32.231 | 242 | 140 | 6 | 2 | 235 | 7 | 232 | 2.07e-31 | 119 |
| MsG0180000110.01.T01 | AT4G11320 | 31.837 | 245 | 139 | 6 | 5 | 236 | 11 | 240 | 1.13e-29 | 114 |
| MsG0180000110.01.T01 | AT4G11320 | 31.837 | 245 | 139 | 6 | 5 | 236 | 11 | 240 | 1.13e-29 | 114 |
| MsG0180000110.01.T01 | AT3G49340 | 32.701 | 211 | 120 | 6 | 54 | 252 | 38 | 238 | 2.07e-28 | 110 |
| MsG0180000110.01.T01 | AT1G29080 | 35.714 | 196 | 97 | 6 | 57 | 236 | 45 | 227 | 2.19e-28 | 110 |
| MsG0180000110.01.T01 | AT1G29110 | 31.390 | 223 | 116 | 9 | 28 | 236 | 15 | 214 | 6.93e-19 | 84.7 |
Find 56 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCCGTCGTCAGTTTCT+TGG | 0.223807 | 1:-1591586 | MsG0180000110.01.T01:CDS |
| TTTGGAAGGAGCAAATTATT+TGG | 0.286718 | 1:-1591276 | MsG0180000110.01.T01:CDS |
| GAAGAACATGATTACCGATT+TGG | 0.310705 | 1:-1591706 | MsG0180000110.01.T01:CDS |
| GAACAAACGTCTCCGTTTAC+CGG | 0.333947 | 1:-1591560 | MsG0180000110.01.T01:CDS |
| GCGCAGAAGGATCAAGCTTC+TGG | 0.386901 | 1:+1591647 | None:intergenic |
| GAACTCAGACGCCGTTAAAT+CGG | 0.390963 | 1:+1591603 | None:intergenic |
| TTCGAATACATACTCCAGTC+TGG | 0.403345 | 1:-1590080 | MsG0180000110.01.T01:CDS |
| GGGTTCATGCGGTTCGTGTT+GGG | 0.409026 | 1:-1591318 | MsG0180000110.01.T01:CDS |
| CTTGCAGGATCCATCTCTTC+CGG | 0.413354 | 1:+1590025 | None:intergenic |
| AGGGTTCATGCGGTTCGTGT+TGG | 0.415010 | 1:-1591319 | MsG0180000110.01.T01:CDS |
| TCGCGCCAATCGAAATCCTC+TGG | 0.427298 | 1:+1591496 | None:intergenic |
| TCTGAGCGTGAGCCGGTAAA+CGG | 0.474751 | 1:+1591548 | None:intergenic |
| GGAGCAAATTATTTGGCGAC+TGG | 0.478944 | 1:-1591269 | MsG0180000110.01.T01:CDS |
| TTGATTTGAACACGCCAAAT+CGG | 0.479498 | 1:+1591692 | None:intergenic |
| GTGATTCCGTGTTGCGCAGA+AGG | 0.484794 | 1:+1591634 | None:intergenic |
| CAGCGGTGTCGACGACTTGT+CGG | 0.487131 | 1:+1591803 | None:intergenic |
| GATTTCGATTGGCGCGAGAA+AGG | 0.501806 | 1:-1591490 | MsG0180000110.01.T01:CDS |
| ATCGTCGGAGTTGGTGTCAT+CGG | 0.513790 | 1:+1591834 | None:intergenic |
| GATGAGAAGATCGTCGGAGT+TGG | 0.521387 | 1:+1591825 | None:intergenic |
| CGCGCCAATCGAAATCCTCT+GGG | 0.522385 | 1:+1591497 | None:intergenic |
| TCTTAGTGAGCAACAGCTTG+TGG | 0.523786 | 1:-1591234 | MsG0180000110.01.T01:CDS |
| TCGAATACATACTCCAGTCT+GGG | 0.524172 | 1:-1590079 | MsG0180000110.01.T01:CDS |
| TTGTGCGGCGGTTGCAACAG+CGG | 0.528593 | 1:+1591864 | None:intergenic |
| GGAGTTGGTGTCATCGGAGA+GGG | 0.533186 | 1:+1591840 | None:intergenic |
| GAACGTAATTCTTGTGACTC+TGG | 0.537907 | 1:-1590131 | MsG0180000110.01.T01:CDS |
| AGATTGTTAGTAGGAAGAAT+CGG | 0.540576 | 1:+1591520 | None:intergenic |
| ATCGGAGAGGGTTTGTGCGG+CGG | 0.540988 | 1:+1591852 | None:intergenic |
| TATGCTTACACCGGAAGAGA+TGG | 0.544908 | 1:-1590035 | MsG0180000110.01.T01:CDS |
| TGTGACTCTGGCTGTAACGG+TGG | 0.548240 | 1:-1590119 | MsG0180000110.01.T01:CDS |
| GGAGCCTTCTGAGCGTGAGC+CGG | 0.555112 | 1:+1591541 | None:intergenic |
| AGTACAACTGGAGCTTTGGA+AGG | 0.555301 | 1:-1591290 | MsG0180000110.01.T01:CDS |
| TCTTGTGACTCTGGCTGTAA+CGG | 0.557182 | 1:-1590122 | MsG0180000110.01.T01:CDS |
| ATCTCCCAGAGGATTTCGAT+TGG | 0.557822 | 1:-1591501 | MsG0180000110.01.T01:CDS |
| CGGTTGCAACAGCGGCGAAG+AGG | 0.560629 | 1:+1591872 | None:intergenic |
| AACGACACTGAAGTTAGATA+CGG | 0.563918 | 1:+1589977 | None:intergenic |
| TCCTCTGGGAGATTGTTAGT+AGG | 0.565410 | 1:+1591511 | None:intergenic |
| TTTACCGGCTCACGCTCAGA+AGG | 0.571687 | 1:-1591545 | MsG0180000110.01.T01:CDS |
| GATGAGGAAACGATGGGCCA+TGG | 0.573673 | 1:+1591903 | None:intergenic |
| GAGCAAATTATTTGGCGACT+GGG | 0.581395 | 1:-1591268 | MsG0180000110.01.T01:CDS |
| AGAGAGCGATGAGGAAACGA+TGG | 0.593669 | 1:+1591896 | None:intergenic |
| CTGATCCTTGACGGGAGTGA+CGG | 0.594529 | 1:+1591465 | None:intergenic |
| TGGTGTGATTAGGGTTCATG+CGG | 0.605339 | 1:-1591329 | MsG0180000110.01.T01:intron |
| CTTGATCCTTCTGCGCAACA+CGG | 0.608322 | 1:-1591640 | MsG0180000110.01.T01:CDS |
| TTGTCGGATGAGAAGATCGT+CGG | 0.630035 | 1:+1591819 | None:intergenic |
| CGAATACATACTCCAGTCTG+GGG | 0.633443 | 1:-1590078 | MsG0180000110.01.T01:CDS |
| GTTTAGTATGTGATCTTCAG+CGG | 0.633912 | 1:+1591786 | None:intergenic |
| GAGAGCGATGAGGAAACGAT+GGG | 0.634967 | 1:+1591897 | None:intergenic |
| GTCATCGGAGAGGGTTTGTG+CGG | 0.646567 | 1:+1591849 | None:intergenic |
| CGGAGTTGGTGTCATCGGAG+AGG | 0.647919 | 1:+1591839 | None:intergenic |
| CGAAGAGGAAGAGAGCGATG+AGG | 0.654036 | 1:+1591887 | None:intergenic |
| GCTTGTGGATTGTGATCATG+TGG | 0.675150 | 1:-1591219 | MsG0180000110.01.T01:intron |
| GAAAAGGACTATGCTTACAC+CGG | 0.677300 | 1:-1590044 | MsG0180000110.01.T01:CDS |
| TCCTACTAACAATCTCCCAG+AGG | 0.684912 | 1:-1591512 | MsG0180000110.01.T01:CDS |
| TGTGATCCAGAGGAACGAAG+AGG | 0.707395 | 1:-1590153 | MsG0180000110.01.T01:intron |
| GAATACATACTCCAGTCTGG+GGG | 0.711512 | 1:-1590077 | MsG0180000110.01.T01:CDS |
| TCAGTCCAAGAAACTGACGA+CGG | 0.796203 | 1:+1591581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAATTTAAACAAAAA+AGG | + | Chr1:1590700-1590719 | None:intergenic | 10.0% |
| !! | TAGCATAAATAATAATATTA+TGG | + | Chr1:1591499-1591518 | None:intergenic | 10.0% |
| !! | TTTGTTTATTTATTTATATG+TGG | - | Chr1:1590868-1590887 | MsG0180000110.01.T01:intron | 10.0% |
| !!! | TACTAATTTTCTTTTATATT+TGG | - | Chr1:1590438-1590457 | MsG0180000110.01.T01:intron | 10.0% |
| !! | AAACAAAAACATCAAAAATA+AGG | + | Chr1:1591549-1591568 | None:intergenic | 15.0% |
| !! | AAATAATAATATTATGGATG+AGG | + | Chr1:1591493-1591512 | None:intergenic | 15.0% |
| !! | AACAAAAACATCAAAAATAA+GGG | + | Chr1:1591548-1591567 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTATATTTGGAA+CGG | - | Chr1:1590443-1590462 | MsG0180000110.01.T01:intron | 15.0% |
| !!! | TATCTTTTAGCATAAAAAAA+TGG | + | Chr1:1591645-1591664 | None:intergenic | 15.0% |
| !!! | TTAATTTTATAGTGATGTAA+AGG | - | Chr1:1591567-1591586 | MsG0180000110.01.T01:CDS | 15.0% |
| !! | ACAAAAACATCAAAAATAAG+GGG | + | Chr1:1591547-1591566 | None:intergenic | 20.0% |
| !! | GTAATAATCATAATCAAAAG+AGG | + | Chr1:1591398-1591417 | None:intergenic | 20.0% |
| !! | GTTTGAATTGAATCAATAAT+TGG | - | Chr1:1590770-1590789 | MsG0180000110.01.T01:intron | 20.0% |
| !! | TTAATGATTAAGCATGATTA+TGG | - | Chr1:1590490-1590509 | MsG0180000110.01.T01:intron | 20.0% |
| !!! | AGTACTTTCATTTTTAAAGA+TGG | - | Chr1:1591234-1591253 | MsG0180000110.01.T01:CDS | 20.0% |
| !!! | ATTGATGATTTGTTTTGATT+TGG | - | Chr1:1590520-1590539 | MsG0180000110.01.T01:intron | 20.0% |
| !!! | TTTGTTTAAATTTTTGTTGC+AGG | - | Chr1:1590702-1590721 | MsG0180000110.01.T01:intron | 20.0% |
| ! | AGACTCTAATTATTGTAAAG+AGG | + | Chr1:1591297-1591316 | None:intergenic | 25.0% |
| ! | CCATCGATGTATATTATTAA+TGG | - | Chr1:1591678-1591697 | MsG0180000110.01.T01:CDS | 25.0% |
| ! | CCATTAATAATATACATCGA+TGG | + | Chr1:1591681-1591700 | None:intergenic | 25.0% |
| ! | GACTCTAATTATTGTAAAGA+GGG | + | Chr1:1591296-1591315 | None:intergenic | 25.0% |
| ! | GTTTGTGGTTATTATTTGTT+TGG | - | Chr1:1590748-1590767 | MsG0180000110.01.T01:intron | 25.0% |
| ! | TTAATAATATACATCGATGG+TGG | + | Chr1:1591678-1591697 | None:intergenic | 25.0% |
| !! | CACTAAATTTTCCGATTTAA+CGG | - | Chr1:1590255-1590274 | MsG0180000110.01.T01:intron | 25.0% |
| !!! | TCTTTTTATTTTGGTGTGTA+TGG | - | Chr1:1590726-1590745 | MsG0180000110.01.T01:intron | 25.0% |
| AGATTGTTAGTAGGAAGAAT+CGG | + | Chr1:1590352-1590371 | None:intergenic | 30.0% | |
| GATCATAATGTGTTCCTATA+TGG | - | Chr1:1591079-1591098 | MsG0180000110.01.T01:intron | 30.0% | |
| GTTTCAAAGAAAAGACTCTA+GGG | + | Chr1:1591367-1591386 | None:intergenic | 30.0% | |
| TGTTTCAAAGAAAAGACTCT+AGG | + | Chr1:1591368-1591387 | None:intergenic | 30.0% | |
| TTATGGATGAGGATAAAACT+CGG | + | Chr1:1591482-1591501 | None:intergenic | 30.0% | |
| TTCTTGAGATGTTCTGTTAT+TGG | - | Chr1:1590807-1590826 | MsG0180000110.01.T01:intron | 30.0% | |
| TTTCAAAGAAAAGACTCTAG+GGG | + | Chr1:1591366-1591385 | None:intergenic | 30.0% | |
| TTTGGAAGGAGCAAATTATT+TGG | - | Chr1:1590593-1590612 | MsG0180000110.01.T01:intron | 30.0% | |
| ! | TTATATGTGGATTACAAACC+TGG | - | Chr1:1590881-1590900 | MsG0180000110.01.T01:intron | 30.0% |
| ! | TTCTTCTTAAGCTGTTTCAA+CGG | - | Chr1:1591152-1591171 | MsG0180000110.01.T01:intron | 30.0% |
| !! | GTTGCAGGTTCTTTTTATTT+TGG | - | Chr1:1590717-1590736 | MsG0180000110.01.T01:intron | 30.0% |
| !!! | GTTTTGATTTGGTGTGATTA+GGG | - | Chr1:1590531-1590550 | MsG0180000110.01.T01:intron | 30.0% |
| !!! | TGTAACCAGTTGTTTTAGAA+TGG | - | Chr1:1590983-1591002 | MsG0180000110.01.T01:intron | 30.0% |
| !!! | TGTTTTGATTTGGTGTGATT+AGG | - | Chr1:1590530-1590549 | MsG0180000110.01.T01:intron | 30.0% |
| AACAACTGGTTACATCTCTT+TGG | + | Chr1:1590977-1590996 | None:intergenic | 35.0% | |
| AACGACACTGAAGTTAGATA+CGG | + | Chr1:1591895-1591914 | None:intergenic | 35.0% | |
| CACATGAAATACAACAAGCA+TGG | + | Chr1:1591618-1591637 | None:intergenic | 35.0% | |
| GATTCAACTCTACTCCATAT+AGG | + | Chr1:1591096-1591115 | None:intergenic | 35.0% | |
| GTTTAGTATGTGATCTTCAG+CGG | + | Chr1:1590086-1590105 | None:intergenic | 35.0% | |
| TTAAACCTGAGGTCAAAGAT+GGG | - | Chr1:1591450-1591469 | MsG0180000110.01.T01:intron | 35.0% | |
| TTCAAAGAAAAGACTCTAGG+GGG | + | Chr1:1591365-1591384 | None:intergenic | 35.0% | |
| TTTAAACCTGAGGTCAAAGA+TGG | - | Chr1:1591449-1591468 | MsG0180000110.01.T01:intron | 35.0% | |
| ! | GAAGAACATGATTACCGATT+TGG | - | Chr1:1590163-1590182 | MsG0180000110.01.T01:intron | 35.0% |
| ! | TCTTCTTAAGCTGTTTCAAC+GGG | - | Chr1:1591153-1591172 | MsG0180000110.01.T01:intron | 35.0% |
| ! | TTGATTTGAACACGCCAAAT+CGG | + | Chr1:1590180-1590199 | None:intergenic | 35.0% |
| ! | TTTTAGTACAACTGGAGCTT+TGG | - | Chr1:1590575-1590594 | MsG0180000110.01.T01:intron | 35.0% |
| !! | ATTTTGGTGTGTATGGTTTG+TGG | - | Chr1:1590733-1590752 | MsG0180000110.01.T01:intron | 35.0% |
| !! | GACAACCATTCTAAAACAAC+TGG | + | Chr1:1590991-1591010 | None:intergenic | 35.0% |
| !!! | GACTGAGTTTTTTAAACCTG+AGG | - | Chr1:1591439-1591458 | MsG0180000110.01.T01:intron | 35.0% |
| AACCAACTCAACCAAGATGT+GGG | + | Chr1:1590921-1590940 | None:intergenic | 40.0% | |
| ACTGAATTGAACCCACATCT+TGG | - | Chr1:1590907-1590926 | MsG0180000110.01.T01:intron | 40.0% | |
| CTTGAGGACTTCCTTAAGAT+CGG | - | Chr1:1591325-1591344 | MsG0180000110.01.T01:intron | 40.0% | |
| GAAAAGGACTATGCTTACAC+CGG | - | Chr1:1591825-1591844 | MsG0180000110.01.T01:CDS | 40.0% | |
| GAACGTAATTCTTGTGACTC+TGG | - | Chr1:1591738-1591757 | MsG0180000110.01.T01:CDS | 40.0% | |
| GAGCAAATTATTTGGCGACT+GGG | - | Chr1:1590601-1590620 | MsG0180000110.01.T01:intron | 40.0% | |
| TAACCAACTCAACCAAGATG+TGG | + | Chr1:1590922-1590941 | None:intergenic | 40.0% | |
| TAAGAAGAATCCCACCAAAC+AGG | + | Chr1:1591141-1591160 | None:intergenic | 40.0% | |
| TAGAGTCTGAGAAAGACTTG+AGG | - | Chr1:1591309-1591328 | MsG0180000110.01.T01:CDS | 40.0% | |
| TCGAATACATACTCCAGTCT+GGG | - | Chr1:1591790-1591809 | MsG0180000110.01.T01:CDS | 40.0% | |
| TGGAGTAGAGTTGAATCACT+TGG | - | Chr1:1591099-1591118 | MsG0180000110.01.T01:intron | 40.0% | |
| TTCGAATACATACTCCAGTC+TGG | - | Chr1:1591789-1591808 | MsG0180000110.01.T01:CDS | 40.0% | |
| ! | ACTTCCTTAAGATCGGTTCT+GGG | - | Chr1:1591332-1591351 | MsG0180000110.01.T01:intron | 40.0% |
| ! | TGTTGGGCTTTTAGTACAAC+TGG | - | Chr1:1590567-1590586 | MsG0180000110.01.T01:intron | 40.0% |
| !! | CATCTTGGTTGAGTTGGTTA+TGG | - | Chr1:1590922-1590941 | MsG0180000110.01.T01:intron | 40.0% |
| !! | CTTGCTTTTGTCAAACTTGC+AGG | + | Chr1:1591862-1591881 | None:intergenic | 40.0% |
| !! | GGTTGAGTTGGTTATGGTTT+GGG | - | Chr1:1590928-1590947 | MsG0180000110.01.T01:intron | 40.0% |
| !! | TGGTTGAGTTGGTTATGGTT+TGG | - | Chr1:1590927-1590946 | MsG0180000110.01.T01:intron | 40.0% |
| AAAGAGGGAGTGAGCACTTA+AGG | + | Chr1:1591281-1591300 | None:intergenic | 45.0% | |
| AACCCACATCTTGGTTGAGT+TGG | - | Chr1:1590916-1590935 | MsG0180000110.01.T01:intron | 45.0% | |
| AAGAATCCCACCAAACAGGT+AGG | + | Chr1:1591137-1591156 | None:intergenic | 45.0% | |
| AATCTTGCAGTGTGATCCAG+AGG | - | Chr1:1591706-1591725 | MsG0180000110.01.T01:CDS | 45.0% | |
| AATGAGTCCTACCTGTTTGG+TGG | - | Chr1:1591127-1591146 | MsG0180000110.01.T01:intron | 45.0% | |
| ATACATGCCTGATCCTTGAC+GGG | + | Chr1:1590415-1590434 | None:intergenic | 45.0% | |
| ATCTCCCAGAGGATTTCGAT+TGG | - | Chr1:1590368-1590387 | MsG0180000110.01.T01:intron | 45.0% | |
| ATGAGTCCTACCTGTTTGGT+GGG | - | Chr1:1591128-1591147 | MsG0180000110.01.T01:intron | 45.0% | |
| CGAATACATACTCCAGTCTG+GGG | - | Chr1:1591791-1591810 | MsG0180000110.01.T01:CDS | 45.0% | |
| GAACAAACGTCTCCGTTTAC+CGG | - | Chr1:1590309-1590328 | MsG0180000110.01.T01:intron | 45.0% | |
| GAACTCAGACGCCGTTAAAT+CGG | + | Chr1:1590269-1590288 | None:intergenic | 45.0% | |
| GAATACATACTCCAGTCTGG+GGG | - | Chr1:1591792-1591811 | MsG0180000110.01.T01:CDS | 45.0% | |
| GATACATGCCTGATCCTTGA+CGG | + | Chr1:1590416-1590435 | None:intergenic | 45.0% | |
| GGAGCAAATTATTTGGCGAC+TGG | - | Chr1:1590600-1590619 | MsG0180000110.01.T01:intron | 45.0% | |
| TATGCTTACACCGGAAGAGA+TGG | - | Chr1:1591834-1591853 | MsG0180000110.01.T01:CDS | 45.0% | |
| TCAGTCCAAGAAACTGACGA+CGG | + | Chr1:1590291-1590310 | None:intergenic | 45.0% | |
| TCCTACTAACAATCTCCCAG+AGG | - | Chr1:1590357-1590376 | MsG0180000110.01.T01:intron | 45.0% | |
| TCTTAGTGAGCAACAGCTTG+TGG | - | Chr1:1590635-1590654 | MsG0180000110.01.T01:intron | 45.0% | |
| TCTTGTGACTCTGGCTGTAA+CGG | - | Chr1:1591747-1591766 | MsG0180000110.01.T01:CDS | 45.0% | |
| TGCAATGAGTCCTACCTGTT+TGG | - | Chr1:1591124-1591143 | MsG0180000110.01.T01:intron | 45.0% | |
| TGGGTTCAATTCAGTTCACC+AGG | + | Chr1:1590902-1590921 | None:intergenic | 45.0% | |
| TGGTGTGATTAGGGTTCATG+CGG | - | Chr1:1590540-1590559 | MsG0180000110.01.T01:intron | 45.0% | |
| TTGTCGGATGAGAAGATCGT+CGG | + | Chr1:1590053-1590072 | None:intergenic | 45.0% | |
| ! | GACTTCCTTAAGATCGGTTC+TGG | - | Chr1:1591331-1591350 | MsG0180000110.01.T01:intron | 45.0% |
| ! | GCTTGTGGATTGTGATCATG+TGG | - | Chr1:1590650-1590669 | MsG0180000110.01.T01:intron | 45.0% |
| ! | TCCTCTGGGAGATTGTTAGT+AGG | + | Chr1:1590361-1590380 | None:intergenic | 45.0% |
| !! | AGTACAACTGGAGCTTTGGA+AGG | - | Chr1:1590579-1590598 | MsG0180000110.01.T01:intron | 45.0% |
| ACCTGAGGTCAAAGATGGGT+TGG | - | Chr1:1591454-1591473 | MsG0180000110.01.T01:intron | 50.0% | |
| AGAGAGCGATGAGGAAACGA+TGG | + | Chr1:1589976-1589995 | None:intergenic | 50.0% | |
| CACGCTCTGATGTCAACGTA+AGG | - | Chr1:1591180-1591199 | MsG0180000110.01.T01:intron | 50.0% | |
| CTTGATCCTTCTGCGCAACA+CGG | - | Chr1:1590229-1590248 | MsG0180000110.01.T01:intron | 50.0% | |
| CTTGCAGGATCCATCTCTTC+CGG | + | Chr1:1591847-1591866 | None:intergenic | 50.0% | |
| GAGAGCGATGAGGAAACGAT+GGG | + | Chr1:1589975-1589994 | None:intergenic | 50.0% | |
| GAGTTCCGTCGTCAGTTTCT+TGG | - | Chr1:1590283-1590302 | MsG0180000110.01.T01:intron | 50.0% | |
| GATGAGAAGATCGTCGGAGT+TGG | + | Chr1:1590047-1590066 | None:intergenic | 50.0% | |
| GATTTCGATTGGCGCGAGAA+AGG | - | Chr1:1590379-1590398 | MsG0180000110.01.T01:intron | 50.0% | |
| GTGTCCCAGAACCGATCTTA+AGG | + | Chr1:1591339-1591358 | None:intergenic | 50.0% | |
| TACGTTCCTCTTCGTTCCTC+TGG | + | Chr1:1591725-1591744 | None:intergenic | 50.0% | |
| TCCAACCCATCTTTGACCTC+AGG | + | Chr1:1591458-1591477 | None:intergenic | 50.0% | |
| TGGGGGAGTAGTGTCAGAAA+AGG | - | Chr1:1591809-1591828 | MsG0180000110.01.T01:CDS | 50.0% | |
| TGTGATCCAGAGGAACGAAG+AGG | - | Chr1:1591716-1591735 | MsG0180000110.01.T01:CDS | 50.0% | |
| !! | ATCGTCGGAGTTGGTGTCAT+CGG | + | Chr1:1590038-1590057 | None:intergenic | 50.0% |
| AGGGTTCATGCGGTTCGTGT+TGG | - | Chr1:1590550-1590569 | MsG0180000110.01.T01:intron | 55.0% | |
| CGAAGAGGAAGAGAGCGATG+AGG | + | Chr1:1589985-1590004 | None:intergenic | 55.0% | |
| CGCGCCAATCGAAATCCTCT+GGG | + | Chr1:1590375-1590394 | None:intergenic | 55.0% | |
| CTGATCCTTGACGGGAGTGA+CGG | + | Chr1:1590407-1590426 | None:intergenic | 55.0% | |
| GCGCAGAAGGATCAAGCTTC+TGG | + | Chr1:1590225-1590244 | None:intergenic | 55.0% | |
| GGGAGTGAGCACTTAAGGCA+TGG | + | Chr1:1591276-1591295 | None:intergenic | 55.0% | |
| GGGTTCATGCGGTTCGTGTT+GGG | - | Chr1:1590551-1590570 | MsG0180000110.01.T01:intron | 55.0% | |
| GTCATCGGAGAGGGTTTGTG+CGG | + | Chr1:1590023-1590042 | None:intergenic | 55.0% | |
| GTGATTCCGTGTTGCGCAGA+AGG | + | Chr1:1590238-1590257 | None:intergenic | 55.0% | |
| TCGCGCCAATCGAAATCCTC+TGG | + | Chr1:1590376-1590395 | None:intergenic | 55.0% | |
| TCTGAGCGTGAGCCGGTAAA+CGG | + | Chr1:1590324-1590343 | None:intergenic | 55.0% | |
| TGTGACTCTGGCTGTAACGG+TGG | - | Chr1:1591750-1591769 | MsG0180000110.01.T01:CDS | 55.0% | |
| !! | GGAGTTGGTGTCATCGGAGA+GGG | + | Chr1:1590032-1590051 | None:intergenic | 55.0% |
| !! | TTTACCGGCTCACGCTCAGA+AGG | - | Chr1:1590324-1590343 | MsG0180000110.01.T01:intron | 55.0% |
| ATCGGAGAGGGTTTGTGCGG+CGG | + | Chr1:1590020-1590039 | None:intergenic | 60.0% | |
| CGTCACTCCCGTCAAGGATC+AGG | - | Chr1:1590405-1590424 | MsG0180000110.01.T01:intron | 60.0% | |
| CTGACACTACTCCCCCAGAC+TGG | + | Chr1:1591806-1591825 | None:intergenic | 60.0% | |
| TTGTGCGGCGGTTGCAACAG+CGG | + | Chr1:1590008-1590027 | None:intergenic | 60.0% | |
| !! | CAGCGGTGTCGACGACTTGT+CGG | + | Chr1:1590069-1590088 | None:intergenic | 60.0% |
| !! | CGGAGTTGGTGTCATCGGAG+AGG | + | Chr1:1590033-1590052 | None:intergenic | 60.0% |
| CGGTTGCAACAGCGGCGAAG+AGG | + | Chr1:1590000-1590019 | None:intergenic | 65.0% | |
| GGAGCCTTCTGAGCGTGAGC+CGG | + | Chr1:1590331-1590350 | None:intergenic | 65.0% | |
| ! | AGGTGCCGTCACTCCCGTCA+AGG | - | Chr1:1590399-1590418 | MsG0180000110.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 1589968 | 1591923 | 1589968 | ID=MsG0180000110.01;Name=MsG0180000110.01 |
| Chr1 | mRNA | 1589968 | 1591923 | 1589968 | ID=MsG0180000110.01.T01;Parent=MsG0180000110.01;Name=MsG0180000110.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|3|0|254 |
| Chr1 | exon | 1591477 | 1591923 | 1591477 | ID=MsG0180000110.01.T01:exon:7203;Parent=MsG0180000110.01.T01 |
| Chr1 | exon | 1591220 | 1591339 | 1591220 | ID=MsG0180000110.01.T01:exon:7204;Parent=MsG0180000110.01.T01 |
| Chr1 | exon | 1589968 | 1590165 | 1589968 | ID=MsG0180000110.01.T01:exon:7205;Parent=MsG0180000110.01.T01 |
| Chr1 | CDS | 1591477 | 1591923 | 1591477 | ID=MsG0180000110.01.T01:cds;Parent=MsG0180000110.01.T01 |
| Chr1 | CDS | 1591220 | 1591339 | 1591220 | ID=MsG0180000110.01.T01:cds;Parent=MsG0180000110.01.T01 |
| Chr1 | CDS | 1589968 | 1590165 | 1589968 | ID=MsG0180000110.01.T01:cds;Parent=MsG0180000110.01.T01 |
| Gene Sequence |
| Protein sequence |
