AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000204.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000204.01.T01 MTR_1g021500 86.504 452 16 4 29 435 40 491 0.0 773
MsG0180000204.01.T01 MTR_1g021500 85.750 400 13 3 29 384 40 439 0.0 679
MsG0180000204.01.T01 MTR_1g021440 35.736 333 149 12 29 320 36 344 1.22e-40 149
MsG0180000204.01.T01 MTR_1g021440 34.006 347 162 11 25 320 32 362 3.86e-38 142
MsG0180000204.01.T01 MTR_1g021330 33.434 332 155 11 29 320 40 345 2.08e-35 135
MsG0180000204.01.T01 MTR_1g021320 30.445 427 184 13 4 323 170 590 8.38e-35 137
MsG0180000204.01.T01 MTR_1g021320 44.776 134 35 3 29 126 39 169 4.52e-20 93.6
MsG0180000204.01.T01 MTR_1g021440 40.773 233 80 8 30 224 37 249 4.55e-34 129
MsG0180000204.01.T01 MTR_1g021440 40.724 221 74 7 25 207 32 233 4.50e-33 127
MsG0180000204.01.T01 MTR_1g021435 32.659 346 137 11 30 320 37 341 4.66e-33 128
MsG0180000204.01.T01 MTR_1g021350 33.754 317 142 12 29 320 35 308 1.24e-30 121
MsG0180000204.01.T01 MTR_1g021410 31.595 326 194 11 30 341 37 347 2.54e-28 115
MsG0180000204.01.T01 MTR_1g021400 29.752 363 143 15 29 336 44 349 4.75e-24 103
MsG0180000204.01.T01 MTR_1g021380 27.711 332 151 10 29 320 35 317 6.05e-24 102
MsG0180000204.01.T01 MTR_1g021360 28.916 332 124 11 29 320 196 455 2.34e-20 93.6
MsG0180000204.01.T01 MTR_1g021360 45.038 131 39 3 29 126 39 169 1.63e-18 87.8
MsG0180000204.01.T01 MTR_1g021290 44.800 125 30 3 30 118 170 291 6.87e-19 87.8
MsG0180000204.01.T01 MTR_1g021290 63.265 49 18 0 30 78 42 90 6.38e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000204.01.T01 AT4G33280 36.607 112 71 0 226 337 208 319 6.50e-19 87.8
MsG0180000204.01.T01 AT4G33280 36.607 112 71 0 226 337 269 380 8.06e-19 88.2

Find 124 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTAGTATCCACTTATT+AGG 0.155011 1:+2817514 None:intergenic
CACATAATCCTTGAGGTATT+TGG 0.165984 1:+2816085 None:intergenic
ATACAAAATTCATAATAATT+TGG 0.185311 1:-2815816 MsG0180000204.01.T01:three_prime_UTR
AATATATCCTCTAAAGAATT+TGG 0.199831 1:+2815951 None:intergenic
CAATGGCCTCCAGTTCTGTT+TGG 0.239462 1:+2817167 None:intergenic
TTTACTGCTTTGTATTCTTA+TGG 0.247999 1:-2815845 MsG0180000204.01.T01:three_prime_UTR
GACATTGTTTGAAAATGTTT+TGG 0.262691 1:+2819424 None:intergenic
GTATATAGTTCCTGCGTCTT+TGG 0.290182 1:+2817837 None:intergenic
CTCAAGCCCCTCTTCTTTCC+TGG 0.311310 1:+2817238 None:intergenic
ATCCACCACCTTGTTCAGTT+TGG 0.318706 1:+2819137 None:intergenic
TGTGACAGGCCTTCTATTTG+AGG 0.325138 1:+2817815 None:intergenic
CGTAACAATGGAGGACTTAC+TGG 0.329858 1:-2817412 MsG0180000204.01.T01:CDS
AATGGCCTCCAGTTCTGTTT+GGG 0.333107 1:+2817168 None:intergenic
GGTTTAGTATCCACTTATTA+GGG 0.333478 1:+2817515 None:intergenic
GTATTATCCAAATTCTTTAG+AGG 0.338668 1:-2815958 MsG0180000204.01.T01:three_prime_UTR
TCCACCACCTTGTTCAGTTT+GGG 0.342784 1:+2819138 None:intergenic
TTGTCCGTTTACCAGTTGTT+TGG 0.357600 1:+2818873 None:intergenic
CCTGAAAATGTGGTCCTAAA+AGG 0.366161 1:-2819389 MsG0180000204.01.T01:CDS
TTCAGTTTGGGCGGCAGCCT+CGG 0.376086 1:+2819150 None:intergenic
TGTCCGTTTACCAGTTGTTT+GGG 0.377248 1:+2818874 None:intergenic
GGTGGAGTGACATGGAATAT+AGG 0.380908 1:-2819362 MsG0180000204.01.T01:CDS
TGCGTCTTTGGAGAGCCCTT+TGG 0.384532 1:+2817849 None:intergenic
GTACCTTCTGAAACTACTAA+TGG 0.385556 1:-2818989 MsG0180000204.01.T01:CDS
GGAGAGCCCTTTGGAGACGC+TGG 0.392912 1:+2817858 None:intergenic
ATGAACTCTTATCTCAAATA+CGG 0.420688 1:-2816133 MsG0180000204.01.T01:CDS
CGGTGCTGCCCAAACAGAAC+TGG 0.423283 1:-2817176 MsG0180000204.01.T01:CDS
TGCTTTAGTCATTAAACAAA+AGG 0.425797 1:+2815920 None:intergenic
CCCTTTGGAGACGCTGGGGC+AGG 0.428621 1:+2817864 None:intergenic
GAAGTCAATACTCCTTCTAA+TGG 0.429462 1:-2819076 MsG0180000204.01.T01:CDS
AACACACGTCAAACTCTTCA+AGG 0.430454 1:+2817359 None:intergenic
ACACAATTACGCACCTTCAA+TGG 0.435249 1:+2817150 None:intergenic
AACTATATACCTCAAATAGA+AGG 0.436916 1:-2817824 MsG0180000204.01.T01:CDS
GCATCAGACATTAATTGCTC+AGG 0.442937 1:+2818932 None:intergenic
GTGGAGTGACATGGAATATA+GGG 0.454700 1:-2819361 MsG0180000204.01.T01:CDS
CAGTTCTGTTTGGGCAGCAC+CGG 0.454969 1:+2817177 None:intergenic
AAAACCAGCTTAGATCTAGA+AGG 0.457413 1:-2816050 MsG0180000204.01.T01:CDS
GAGAGCCCTTTGGAGACGCT+GGG 0.458201 1:+2817859 None:intergenic
CGTCCCAAACAACTGGTAAA+CGG 0.458610 1:-2818877 MsG0180000204.01.T01:CDS
ACTGTTCCGTCCCAAACAAC+TGG 0.462388 1:-2818884 MsG0180000204.01.T01:CDS
AGGAGCCGAGACAGACGAGC+AGG 0.462676 1:-2816174 MsG0180000204.01.T01:CDS
CCTTCATCAACACCATTAGA+AGG 0.467182 1:+2819064 None:intergenic
AAGAGGGGCTTGAGTTCTAC+AGG 0.469641 1:-2817229 MsG0180000204.01.T01:CDS
GGAGAATGCACCGCAGTAAG+AGG 0.480989 1:+2817259 None:intergenic
ACAGACGCAACAGCATAAAC+AGG 0.486042 1:+2818845 None:intergenic
ACAGAACTGGAGGCCATTGA+AGG 0.495326 1:-2817163 MsG0180000204.01.T01:intron
TACGCATGGGTAAGAATGAA+TGG 0.495657 1:-2817462 MsG0180000204.01.T01:CDS
CTTACTGCGGTGCATTCTCC+AGG 0.496763 1:-2817256 MsG0180000204.01.T01:CDS
TGGGTAAGAATGAATGGCTT+GGG 0.497908 1:-2817456 MsG0180000204.01.T01:CDS
ATGGGTAAGAATGAATGGCT+TGG 0.510570 1:-2817457 MsG0180000204.01.T01:CDS
TATTAGTGCCGTGGTTTGTG+TGG 0.512890 1:-2819566 MsG0180000204.01.T01:CDS
GTTTGGGACGGAACAGTTGT+TGG 0.513367 1:+2818890 None:intergenic
ACCTGCCCCAGCGTCTCCAA+AGG 0.514129 1:-2817865 MsG0180000204.01.T01:CDS
ATACAAAGCAGTAAAATAGC+AGG 0.514813 1:+2815853 None:intergenic
CAGTCCCTGCTCGTCTGTCT+CGG 0.515385 1:+2816169 None:intergenic
CCTTCTAATGGTGTTGATGA+AGG 0.519085 1:-2819064 MsG0180000204.01.T01:CDS
ACTAGTCATTCCCTAATAAG+TGG 0.519210 1:-2817525 MsG0180000204.01.T01:intron
GTTTCAGAAGGTACAGCAAA+TGG 0.520424 1:+2818998 None:intergenic
GGTGCCTTCTAGATCTAAGC+TGG 0.524684 1:+2816046 None:intergenic
CTAGCTGAGTCATCACCAAT+GGG 0.530350 1:-2816019 MsG0180000204.01.T01:exon
ATATTCCATGTCACTCCACC+AGG 0.530935 1:+2819365 None:intergenic
CCTGCCCCAGCGTCTCCAAA+GGG 0.534279 1:-2817864 MsG0180000204.01.T01:CDS
CAAATACCTCAAGGATTATG+TGG 0.537700 1:-2816084 MsG0180000204.01.T01:CDS
TCTTAGTACGTAATTCCCAT+TGG 0.539388 1:+2816004 None:intergenic
ATGTCATGCAAATGACCAGC+TGG 0.547589 1:+2817328 None:intergenic
TCAAGATGTGATATTACGCA+TGG 0.548312 1:-2817476 MsG0180000204.01.T01:CDS
CATCAGACATTAATTGCTCA+GGG 0.548758 1:+2818933 None:intergenic
CGTTTACCAGTTGTTTGGGA+CGG 0.549463 1:+2818878 None:intergenic
TTTGTTTAATGACTAAAGCA+TGG 0.553197 1:-2815917 MsG0180000204.01.T01:three_prime_UTR
GCTAGCTGAGTCATCACCAA+TGG 0.559490 1:-2816020 MsG0180000204.01.T01:exon
AAGGTCCTGGTGGAGTGACA+TGG 0.566287 1:-2819370 MsG0180000204.01.T01:CDS
TGTATACAAGAGATTCTTCG+TGG 0.566958 1:-2817709 MsG0180000204.01.T01:intron
AATCTCTTGTATACATGTGA+AGG 0.571018 1:+2817717 None:intergenic
CTTGAGACGATGGAGCAAGA+TGG 0.572879 1:+2817494 None:intergenic
TTTCCATTAGTAGTTTCAGA+AGG 0.573429 1:+2818986 None:intergenic
GAGTTCTACAGGAAAGAAGA+GGG 0.574907 1:-2817218 MsG0180000204.01.T01:CDS
AAAGAAGCTGCCTGAAAATG+TGG 0.583717 1:-2819399 MsG0180000204.01.T01:CDS
GTGTGTTTGTTCAAACCAGC+TGG 0.583771 1:-2817343 MsG0180000204.01.T01:CDS
GCTGCCGCCCAAACTGAACA+AGG 0.584723 1:-2819145 MsG0180000204.01.T01:CDS
ACATGTCAATATTAGTGCCG+TGG 0.589545 1:-2819575 MsG0180000204.01.T01:CDS
GCATTCTCCAGGAAAGAAGA+GGG 0.592388 1:-2817245 MsG0180000204.01.T01:CDS
AAAATCATCCAAATACCTCA+AGG 0.596480 1:-2816093 MsG0180000204.01.T01:CDS
TGAACTCTTATCTCAAATAC+GGG 0.597831 1:-2816132 MsG0180000204.01.T01:CDS
AAACAACTGGTAAACGGACA+AGG 0.598332 1:-2818871 MsG0180000204.01.T01:CDS
TGCATTCTCCAGGAAAGAAG+AGG 0.603183 1:-2817246 MsG0180000204.01.T01:CDS
ACGAAGACCCACACAAACCA+CGG 0.603291 1:+2819558 None:intergenic
TGCTGCCCAAACAGAACTGG+AGG 0.604957 1:-2817173 MsG0180000204.01.T01:CDS
AGTTACAAGCAAGCTCTCCT+CGG 0.605075 1:+2817746 None:intergenic
AAGGTACAGCAAATGGCACT+CGG 0.606956 1:+2819005 None:intergenic
CATAATATTCGTAACAATGG+AGG 0.607755 1:-2817421 MsG0180000204.01.T01:CDS
AGGTGGTGGATGTTCTAGCA+AGG 0.607880 1:-2819125 MsG0180000204.01.T01:CDS
GCCCAAACTGAACAAGGTGG+TGG 0.609494 1:-2819139 MsG0180000204.01.T01:CDS
ATTAGTGCCGTGGTTTGTGT+GGG 0.611186 1:-2819565 MsG0180000204.01.T01:CDS
AATGTGGTCCTAAAAGGTCC+TGG 0.611828 1:-2819383 MsG0180000204.01.T01:CDS
GTGGATGTTCTAGCAAGGGA+AGG 0.613993 1:-2819120 MsG0180000204.01.T01:CDS
TGAGTTCTACAGGAAAGAAG+AGG 0.614505 1:-2817219 MsG0180000204.01.T01:CDS
AACAATGGAGGACTTACTGG+TGG 0.616719 1:-2817409 MsG0180000204.01.T01:CDS
GTTCGGAAGTGGGCACGCCG+AGG 0.616819 1:-2819167 MsG0180000204.01.T01:CDS
TATCATAATATTCGTAACAA+TGG 0.617731 1:-2817424 MsG0180000204.01.T01:CDS
ACCACCTTGTTCAGTTTGGG+CGG 0.621987 1:+2819141 None:intergenic
GGTGGTGGATGTTCTAGCAA+GGG 0.623883 1:-2819124 MsG0180000204.01.T01:CDS
AAAGGGCTCTCCAAAGACGC+AGG 0.627367 1:-2817847 MsG0180000204.01.T01:CDS
CAAGATGTGATATTACGCAT+GGG 0.629761 1:-2817475 MsG0180000204.01.T01:CDS
AGACATTAATTGCTCAGGGG+TGG 0.633255 1:+2818937 None:intergenic
ATGGAGGACTTACTGGTGGG+TGG 0.638391 1:-2817405 MsG0180000204.01.T01:CDS
AATATCACATCTTGAGACGA+TGG 0.639490 1:+2817484 None:intergenic
GGAGATTACTCCTCTTACTG+CGG 0.639926 1:-2817269 MsG0180000204.01.T01:CDS
AGAGCCCTTTGGAGACGCTG+GGG 0.640012 1:+2817860 None:intergenic
GGAGTTAAGAGAACACTGAC+CGG 0.646401 1:-2817196 MsG0180000204.01.T01:CDS
TGGATGTTCTAGCAAGGGAA+GGG 0.650202 1:-2819119 MsG0180000204.01.T01:CDS
AAGGGACACAAACAATTCTG+TGG 0.651587 1:-2819101 MsG0180000204.01.T01:CDS
AGTTATGATCTTCGTAACGC+CGG 0.659614 1:-2819603 MsG0180000204.01.T01:CDS
TTGGTACCACATAATCCTTG+AGG 0.659780 1:+2816078 None:intergenic
TAATATTGACATGTTGACAC+CGG 0.662143 1:+2819584 None:intergenic
GGCTCAGGCAGCATGTACCG+AGG 0.663486 1:-2817763 MsG0180000204.01.T01:CDS
GTGGTCCTAAAAGGTCCTGG+TGG 0.664078 1:-2819380 MsG0180000204.01.T01:CDS
GGAGCCGAGACAGACGAGCA+GGG 0.667982 1:-2816173 MsG0180000204.01.T01:CDS
ATAGGGCTGACAAGTAGAGA+CGG 0.678435 1:-2819344 MsG0180000204.01.T01:CDS
ACAATGGAGGACTTACTGGT+GGG 0.682704 1:-2817408 MsG0180000204.01.T01:CDS
GGTGATGACTCAGCTAGCAG+AGG 0.684062 1:+2816025 None:intergenic
AGTTCTACAGGAAAGAAGAG+GGG 0.697073 1:-2817217 MsG0180000204.01.T01:CDS
CATTCTCCAGGAAAGAAGAG+GGG 0.708428 1:-2817244 MsG0180000204.01.T01:CDS
GCCGCCCAAACTGAACAAGG+TGG 0.731431 1:-2819142 MsG0180000204.01.T01:CDS
ATCAGACATTAATTGCTCAG+GGG 0.741591 1:+2818934 None:intergenic
CAACTGGTAAACGGACAAGG+AGG 0.752519 1:-2818868 MsG0180000204.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAAATTCATAATAATT+TGG - Chr1:2819615-2819634 MsG0180000204.01.T01:CDS 10.0%
!! GTAATAAAAATAATCATAAT+TGG - Chr1:2817114-2817133 MsG0180000204.01.T01:intron 10.0%
!!! TTAATTGTACATTATTTTTA+TGG - Chr1:2819230-2819249 MsG0180000204.01.T01:intron 10.0%
!! AAGTTAAAAAAGTAAAGTAA+GGG + Chr1:2817761-2817780 None:intergenic 15.0%
!! ATAAAAATAAAAACACAATG+AGG + Chr1:2817817-2817836 None:intergenic 15.0%
!! TATAATAAAGTTAAAAATGC+AGG + Chr1:2817850-2817869 None:intergenic 15.0%
!!! AATGAATATTTTATTACATG+AGG + Chr1:2819147-2819166 None:intergenic 15.0%
!! AAATCTCTCATTACTAAATT+TGG + Chr1:2817143-2817162 None:intergenic 20.0%
!! AACTAAAATCATGTAAAACA+AGG - Chr1:2818866-2818885 MsG0180000204.01.T01:CDS 20.0%
!! CAAGTTAAAAAAGTAAAGTA+AGG + Chr1:2817762-2817781 None:intergenic 20.0%
!! TATCATAATATTCGTAACAA+TGG - Chr1:2818007-2818026 MsG0180000204.01.T01:intron 20.0%
!!! AATATATCCTCTAAAGAATT+TGG + Chr1:2819483-2819502 None:intergenic 20.0%
!!! AATTTAGTAATGAGAGATTT+TGG - Chr1:2817143-2817162 MsG0180000204.01.T01:intron 20.0%
!!! ACATTGTTTGAAAATGTTTT+GGG + Chr1:2816009-2816028 None:intergenic 20.0%
!!! ATTTAGTAATGAGAGATTTT+GGG - Chr1:2817144-2817163 MsG0180000204.01.T01:intron 20.0%
!!! TACATTATTTTTATGGATCA+AGG - Chr1:2819237-2819256 MsG0180000204.01.T01:intron 20.0%
!!! TCAGTTTTGCAAAATAATTA+GGG + Chr1:2818525-2818544 None:intergenic 20.0%
!!! TGATTTTACTATGTTTCTTT+TGG + Chr1:2819325-2819344 None:intergenic 20.0%
!!! TTCAGTTTTGCAAAATAATT+AGG + Chr1:2818526-2818545 None:intergenic 20.0%
!!! TTTGAGGTTTTAATATTTGA+TGG - Chr1:2816207-2816226 MsG0180000204.01.T01:intron 20.0%
! AAAGAAACATTTAACACTTG+TGG - Chr1:2816706-2816725 MsG0180000204.01.T01:intron 25.0%
! AACTATATACCTCAAATAGA+AGG - Chr1:2817607-2817626 MsG0180000204.01.T01:intron 25.0%
! AGTTACATGAAATTGGAATT+TGG + Chr1:2816971-2816990 None:intergenic 25.0%
! ATGAACTCTTATCTCAAATA+CGG - Chr1:2819298-2819317 MsG0180000204.01.T01:intron 25.0%
! CCAATTTCATGTAACTATAT+AGG - Chr1:2816975-2816994 MsG0180000204.01.T01:intron 25.0%
! CCTATATAGTTACATGAAAT+TGG + Chr1:2816978-2816997 None:intergenic 25.0%
! GTATTATCCAAATTCTTTAG+AGG - Chr1:2819473-2819492 MsG0180000204.01.T01:intron 25.0%
! TATATGTTAACAGTTGTGTT+AGG - Chr1:2818341-2818360 MsG0180000204.01.T01:intron 25.0%
! TGCTTTAGTCATTAAACAAA+AGG + Chr1:2819514-2819533 None:intergenic 25.0%
! TGTAAATACTGCATTACAAA+TGG + Chr1:2818722-2818741 None:intergenic 25.0%
! TTTACTGCTTTGTATTCTTA+TGG - Chr1:2819586-2819605 MsG0180000204.01.T01:CDS 25.0%
! TTTGTTTAATGACTAAAGCA+TGG - Chr1:2819514-2819533 MsG0180000204.01.T01:intron 25.0%
!! AATAACCGAACATTTTCAAA+GGG - Chr1:2816944-2816963 MsG0180000204.01.T01:intron 25.0%
!! ATCGTTTTATGTCTATGTTT+TGG - Chr1:2818386-2818405 MsG0180000204.01.T01:intron 25.0%
!! GACATTGTTTGAAAATGTTT+TGG + Chr1:2816010-2816029 None:intergenic 25.0%
!! TTTTTACTTATGAATGACGA+CGG - Chr1:2816683-2816702 MsG0180000204.01.T01:intron 25.0%
!!! GAAGTTTATATTTTGTTTGC+AGG - Chr1:2815978-2815997 MsG0180000204.01.T01:three_prime_UTR 25.0%
!!! GTAGGTTATAATTGACTTTT+AGG - Chr1:2815894-2815913 MsG0180000204.01.T01:three_prime_UTR 25.0%
!!! GTGACATTTGTTGTTTATAA+TGG + Chr1:2816832-2816851 None:intergenic 25.0%
AAAATCATCCAAATACCTCA+AGG - Chr1:2819338-2819357 MsG0180000204.01.T01:CDS 30.0%
AAACATTAAAAACAGCCGTT+TGG - Chr1:2819028-2819047 MsG0180000204.01.T01:CDS 30.0%
AATCTCTTGTATACATGTGA+AGG + Chr1:2817717-2817736 None:intergenic 30.0%
ATACAAAGCAGTAAAATAGC+AGG + Chr1:2819581-2819600 None:intergenic 30.0%
ATATAGGTGATAGGAAAAGT+GGG - Chr1:2816991-2817010 MsG0180000204.01.T01:intron 30.0%
CAAATGTTTGAATGAATGAG+TGG - Chr1:2817017-2817036 MsG0180000204.01.T01:intron 30.0%
CACTCATTCATTCAAACATT+TGG + Chr1:2817019-2817038 None:intergenic 30.0%
CATAATATTCGTAACAATGG+AGG - Chr1:2818010-2818029 MsG0180000204.01.T01:intron 30.0%
CATGTAACTATATAGGTGAT+AGG - Chr1:2816982-2817001 MsG0180000204.01.T01:intron 30.0%
CTGTTATCCCAATTAAATAG+AGG - Chr1:2819087-2819106 MsG0180000204.01.T01:CDS 30.0%
GCTGACATGAATTTCTTTAT+TGG - Chr1:2818896-2818915 MsG0180000204.01.T01:CDS 30.0%
GGTTTAGTATCCACTTATTA+GGG + Chr1:2817919-2817938 None:intergenic 30.0%
GTCTTAACTATTGCATTCAT+TGG + Chr1:2816791-2816810 None:intergenic 30.0%
TAATATTGACATGTTGACAC+CGG + Chr1:2815850-2815869 None:intergenic 30.0%
TATATAGGTGATAGGAAAAG+TGG - Chr1:2816990-2817009 MsG0180000204.01.T01:intron 30.0%
TATGCATTTAGTACTGTGTT+AGG - Chr1:2818995-2819014 MsG0180000204.01.T01:CDS 30.0%
TCTCTCATTACTAAATTTGG+TGG + Chr1:2817140-2817159 None:intergenic 30.0%
TGAACTCTTATCTCAAATAC+GGG - Chr1:2819299-2819318 MsG0180000204.01.T01:intron 30.0%
TGAGATTGAAAAAACTCTTC+AGG - Chr1:2817644-2817663 MsG0180000204.01.T01:intron 30.0%
TGGTTTAGTATCCACTTATT+AGG + Chr1:2817920-2817939 None:intergenic 30.0%
TTACACATAGTGAATTACCT+AGG + Chr1:2818445-2818464 None:intergenic 30.0%
TTCCTGTTCTTTAAGTACAA+CGG - Chr1:2816174-2816193 MsG0180000204.01.T01:CDS 30.0%
TTTAACACTTGTGGTAAAAG+CGG - Chr1:2816715-2816734 MsG0180000204.01.T01:intron 30.0%
TTTAGTCTAATCTTCTACCT+AGG - Chr1:2818425-2818444 MsG0180000204.01.T01:intron 30.0%
TTTCCATTAGTAGTTTCAGA+AGG + Chr1:2816448-2816467 None:intergenic 30.0%
! ATAACCGAACATTTTCAAAG+GGG - Chr1:2816945-2816964 MsG0180000204.01.T01:intron 30.0%
! GAATAACCGAACATTTTCAA+AGG - Chr1:2816943-2816962 MsG0180000204.01.T01:intron 30.0%
! GGATATTCCATCATTACTTT+TGG - Chr1:2817038-2817057 MsG0180000204.01.T01:intron 30.0%
! GTTTTGCAAAATAATTAGGG+TGG + Chr1:2818522-2818541 None:intergenic 30.0%
! TGTGGTCTAGAATTAAATTG+AGG + Chr1:2817067-2817086 None:intergenic 30.0%
!! CTATGTTTTGGATGTTATGA+TGG - Chr1:2818398-2818417 MsG0180000204.01.T01:intron 30.0%
!! TTGTTGTTTATAATGGTCCA+CGG + Chr1:2816825-2816844 None:intergenic 30.0%
AAAACCAGCTTAGATCTAGA+AGG - Chr1:2819381-2819400 MsG0180000204.01.T01:CDS 35.0%
AATATCACATCTTGAGACGA+TGG + Chr1:2817950-2817969 None:intergenic 35.0%
ACCTTCATATTCTCATTCAC+GGG - Chr1:2818608-2818627 MsG0180000204.01.T01:intron 35.0%
ACTAGTCATTCCCTAATAAG+TGG - Chr1:2817906-2817925 MsG0180000204.01.T01:intron 35.0%
AGGCATTTAGTCTACTAAGA+TGG - Chr1:2815914-2815933 MsG0180000204.01.T01:three_prime_UTR 35.0%
ATCAGACATTAATTGCTCAG+GGG + Chr1:2816500-2816519 None:intergenic 35.0%
CAAATACCTCAAGGATTATG+TGG - Chr1:2819347-2819366 MsG0180000204.01.T01:CDS 35.0%
CAAGATGTGATATTACGCAT+GGG - Chr1:2817956-2817975 MsG0180000204.01.T01:intron 35.0%
CAAGTTTACTATGCTTCTTG+TGG + Chr1:2817085-2817104 None:intergenic 35.0%
CACCTTCATATTCTCATTCA+CGG - Chr1:2818607-2818626 MsG0180000204.01.T01:intron 35.0%
CAGTAGACAGATATGTTTCT+TGG + Chr1:2816854-2816873 None:intergenic 35.0%
CATCAGACATTAATTGCTCA+GGG + Chr1:2816501-2816520 None:intergenic 35.0%
GAAGTCAATACTCCTTCTAA+TGG - Chr1:2816355-2816374 MsG0180000204.01.T01:intron 35.0%
GATTGAAAAAACTCTTCAGG+TGG - Chr1:2817647-2817666 MsG0180000204.01.T01:intron 35.0%
TAGCGTGCCTCTATTTAATT+GGG + Chr1:2819097-2819116 None:intergenic 35.0%
TCAAGATGTGATATTACGCA+TGG - Chr1:2817955-2817974 MsG0180000204.01.T01:intron 35.0%
TCAGGAGAAAGCTCTTAATT+GGG - Chr1:2816649-2816668 MsG0180000204.01.T01:intron 35.0%
TCCATGTTTCAAGAAAGCAA+TGG + Chr1:2818584-2818603 None:intergenic 35.0%
TCCATTGCTTTCTTGAAACA+TGG - Chr1:2818580-2818599 MsG0180000204.01.T01:intron 35.0%
TCTTAGTACGTAATTCCCAT+TGG + Chr1:2819430-2819449 None:intergenic 35.0%
TCTTTATTGGAACTCTCTGT+TGG - Chr1:2818909-2818928 MsG0180000204.01.T01:CDS 35.0%
TGTATACAAGAGATTCTTCG+TGG - Chr1:2817722-2817741 MsG0180000204.01.T01:CDS 35.0%
TTAGCGTGCCTCTATTTAAT+TGG + Chr1:2819098-2819117 None:intergenic 35.0%
! CACATAATCCTTGAGGTATT+TGG + Chr1:2819349-2819368 None:intergenic 35.0%
! GCAGTTTTCTCACTTATCAA+AGG - Chr1:2817329-2817348 MsG0180000204.01.T01:CDS 35.0%
! TCAATCTCATCTTTTGTGAC+AGG + Chr1:2817633-2817652 None:intergenic 35.0%
! TTAACAGAAAGAGTACACTG+AGG - Chr1:2818957-2818976 MsG0180000204.01.T01:CDS 35.0%
!! ACACTTAGCTGATGTTTTTG+TGG - Chr1:2817280-2817299 MsG0180000204.01.T01:CDS 35.0%
!! GTACCTTCTGAAACTACTAA+TGG - Chr1:2816442-2816461 MsG0180000204.01.T01:intron 35.0%
!!! AGCTTATTTTGTTCGGAAGT+GGG - Chr1:2816254-2816273 MsG0180000204.01.T01:intron 35.0%
!!! GAGCATTTTTAGAGTTGTTG+AGG - Chr1:2818141-2818160 MsG0180000204.01.T01:intron 35.0%
!!! GCAGTAGCTAGACTTTTTTA+AGG - Chr1:2818475-2818494 MsG0180000204.01.T01:intron 35.0%
!!! TCTAAGCTGGTTTTCTTCTT+TGG + Chr1:2819375-2819394 None:intergenic 35.0%
AAACAACTGGTAAACGGACA+AGG - Chr1:2816560-2816579 MsG0180000204.01.T01:intron 40.0%
AAAGAAGCTGCCTGAAAATG+TGG - Chr1:2816032-2816051 MsG0180000204.01.T01:exon 40.0%
AAAGCTCTTAATTGGGTGAC+TGG - Chr1:2816656-2816675 MsG0180000204.01.T01:intron 40.0%
AACACACGTCAAACTCTTCA+AGG + Chr1:2818075-2818094 None:intergenic 40.0%
AAGGGACACAAACAATTCTG+TGG - Chr1:2816330-2816349 MsG0180000204.01.T01:intron 40.0%
ACACAATTACGCACCTTCAA+TGG + Chr1:2818284-2818303 None:intergenic 40.0%
ACATGTCAATATTAGTGCCG+TGG - Chr1:2815856-2815875 MsG0180000204.01.T01:three_prime_UTR 40.0%
AGTCGTTCTCTTTCAAAGAG+TGG + Chr1:2816155-2816174 None:intergenic 40.0%
AGTTATGATCTTCGTAACGC+CGG - Chr1:2815828-2815847 MsG0180000204.01.T01:three_prime_UTR 40.0%
AGTTCTACAGGAAAGAAGAG+GGG - Chr1:2818214-2818233 MsG0180000204.01.T01:intron 40.0%
ATGGGTAAGAATGAATGGCT+TGG - Chr1:2817974-2817993 MsG0180000204.01.T01:intron 40.0%
CACCGTTGTACTTAAAGAAC+AGG + Chr1:2816179-2816198 None:intergenic 40.0%
CCTGAAAATGTGGTCCTAAA+AGG - Chr1:2816042-2816061 MsG0180000204.01.T01:CDS 40.0%
CCTTCATCAACACCATTAGA+AGG + Chr1:2816370-2816389 None:intergenic 40.0%
CGTGAATGAGAATATGAAGG+TGG + Chr1:2818609-2818628 None:intergenic 40.0%
CTCAGGAGAAAGCTCTTAAT+TGG - Chr1:2816648-2816667 MsG0180000204.01.T01:intron 40.0%
GAAAGCAATGGACAAACACT+TGG + Chr1:2818572-2818591 None:intergenic 40.0%
GAGGACTCCAAAAGTAATGA+TGG + Chr1:2817048-2817067 None:intergenic 40.0%
GAGTTCTACAGGAAAGAAGA+GGG - Chr1:2818213-2818232 MsG0180000204.01.T01:intron 40.0%
GCATCAGACATTAATTGCTC+AGG + Chr1:2816502-2816521 None:intergenic 40.0%
GTATATAGTTCCTGCGTCTT+TGG + Chr1:2817597-2817616 None:intergenic 40.0%
GTGGAGTGACATGGAATATA+GGG - Chr1:2816070-2816089 MsG0180000204.01.T01:CDS 40.0%
TACGCATGGGTAAGAATGAA+TGG - Chr1:2817969-2817988 MsG0180000204.01.T01:intron 40.0%
TATCAAATCAATGTCCTGCC+AGG + Chr1:2817210-2817229 None:intergenic 40.0%
TCAGCTAAGTGTCACAATGT+TGG + Chr1:2817272-2817291 None:intergenic 40.0%
TGAGTTCTACAGGAAAGAAG+AGG - Chr1:2818212-2818231 MsG0180000204.01.T01:intron 40.0%
TGGGTAAGAATGAATGGCTT+GGG - Chr1:2817975-2817994 MsG0180000204.01.T01:intron 40.0%
TGTCCGTTTACCAGTTGTTT+GGG + Chr1:2816560-2816579 None:intergenic 40.0%
TGTCTGTGTTGTGTTTGTGT+TGG - Chr1:2817434-2817453 MsG0180000204.01.T01:CDS 40.0%
TTGGTACCACATAATCCTTG+AGG + Chr1:2819356-2819375 None:intergenic 40.0%
TTGTCCGTTTACCAGTTGTT+TGG + Chr1:2816561-2816580 None:intergenic 40.0%
! ACTTATCAAAGGTGTGTCCA+GGG - Chr1:2817340-2817359 MsG0180000204.01.T01:CDS 40.0%
! ATTTTACTTCACGCAAGGGT+GGG - Chr1:2816113-2816132 MsG0180000204.01.T01:CDS 40.0%
! GCACATTTTACTTCACGCAA+GGG - Chr1:2816109-2816128 MsG0180000204.01.T01:CDS 40.0%
! GTTTCAGAAGGTACAGCAAA+TGG + Chr1:2816436-2816455 None:intergenic 40.0%
! TTGGCCCCTTTGAAAATGTT+CGG + Chr1:2816952-2816971 None:intergenic 40.0%
! TTTTACCAGTGTCACATGTC+TGG - Chr1:2817411-2817430 MsG0180000204.01.T01:CDS 40.0%
!! ACATGGACTTGCTGTTAATG+TGG - Chr1:2817511-2817530 MsG0180000204.01.T01:CDS 40.0%
!! CCTTCTAATGGTGTTGATGA+AGG - Chr1:2816367-2816386 MsG0180000204.01.T01:intron 40.0%
!! GAGATTTTGGGTAGAAACAG+TGG - Chr1:2817156-2817175 MsG0180000204.01.T01:intron 40.0%
!!! CAGCTTATTTTGTTCGGAAG+TGG - Chr1:2816253-2816272 MsG0180000204.01.T01:intron 40.0%
!!! CCTTTTAGGACCACATTTTC+AGG + Chr1:2816045-2816064 None:intergenic 40.0%
!!! CTCATTCACGGGCATTTTTT+TGG - Chr1:2818619-2818638 MsG0180000204.01.T01:intron 40.0%
AAAAACTCTTCAGGTGGCTC+AGG - Chr1:2817653-2817672 MsG0180000204.01.T01:intron 45.0%
AACAATGGAGGACTTACTGG+TGG - Chr1:2818022-2818041 MsG0180000204.01.T01:intron 45.0%
AAGGTACAGCAAATGGCACT+CGG + Chr1:2816429-2816448 None:intergenic 45.0%
AATGGCCTCCAGTTCTGTTT+GGG + Chr1:2818266-2818285 None:intergenic 45.0%
AATGTGGTCCTAAAAGGTCC+TGG - Chr1:2816048-2816067 MsG0180000204.01.T01:CDS 45.0%
ACAATGGAGGACTTACTGGT+GGG - Chr1:2818023-2818042 MsG0180000204.01.T01:intron 45.0%
ACAGACGCAACAGCATAAAC+AGG + Chr1:2816589-2816608 None:intergenic 45.0%
ACCACGAACGTCTAATTCTC+AGG - Chr1:2816631-2816650 MsG0180000204.01.T01:intron 45.0%
AGACATTAATTGCTCAGGGG+TGG + Chr1:2816497-2816516 None:intergenic 45.0%
AGTTACAAGCAAGCTCTCCT+CGG + Chr1:2817688-2817707 None:intergenic 45.0%
ATAGGGCTGACAAGTAGAGA+CGG - Chr1:2816087-2816106 MsG0180000204.01.T01:CDS 45.0%
ATATTCCATGTCACTCCACC+AGG + Chr1:2816069-2816088 None:intergenic 45.0%
ATCCACCACCTTGTTCAGTT+TGG + Chr1:2816297-2816316 None:intergenic 45.0%
ATGTCATGCAAATGACCAGC+TGG + Chr1:2818106-2818125 None:intergenic 45.0%
CAACGGTGAATCGTTGTTTG+AGG - Chr1:2816191-2816210 MsG0180000204.01.T01:intron 45.0%
CATTCTCCAGGAAAGAAGAG+GGG - Chr1:2818187-2818206 MsG0180000204.01.T01:intron 45.0%
CGTAACAATGGAGGACTTAC+TGG - Chr1:2818019-2818038 MsG0180000204.01.T01:intron 45.0%
CGTCCCAAACAACTGGTAAA+CGG - Chr1:2816554-2816573 MsG0180000204.01.T01:intron 45.0%
CGTTTACCAGTTGTTTGGGA+CGG + Chr1:2816556-2816575 None:intergenic 45.0%
CTAGCTGAGTCATCACCAAT+GGG - Chr1:2819412-2819431 MsG0180000204.01.T01:CDS 45.0%
GAGCCATGTGAAGAACCAAA+CGG + Chr1:2819046-2819065 None:intergenic 45.0%
GCATTCTCCAGGAAAGAAGA+GGG - Chr1:2818186-2818205 MsG0180000204.01.T01:intron 45.0%
GCCCGTGAATGAGAATATGA+AGG + Chr1:2818612-2818631 None:intergenic 45.0%
GGAACTCTCTGTTGGACTTT+CGG - Chr1:2818917-2818936 MsG0180000204.01.T01:CDS 45.0%
GGAGATTACTCCTCTTACTG+CGG - Chr1:2818162-2818181 MsG0180000204.01.T01:intron 45.0%
GGAGTTAAGAGAACACTGAC+CGG - Chr1:2818235-2818254 MsG0180000204.01.T01:intron 45.0%
GGTGGAGTGACATGGAATAT+AGG - Chr1:2816069-2816088 MsG0180000204.01.T01:CDS 45.0%
GTCTGAGGAAGTTACGTTGT+TGG - Chr1:2818305-2818324 MsG0180000204.01.T01:intron 45.0%
GTGGTCTTCCTCTTCTTACT+CGG + Chr1:2816613-2816632 None:intergenic 45.0%
GTGTGTTTGTTCAAACCAGC+TGG - Chr1:2818088-2818107 MsG0180000204.01.T01:intron 45.0%
TAAGACTATCTGCGTATCCG+TGG - Chr1:2816805-2816824 MsG0180000204.01.T01:intron 45.0%
TCCACCACCTTGTTCAGTTT+GGG + Chr1:2816296-2816315 None:intergenic 45.0%
TCCTGAGAATTAGACGTTCG+TGG + Chr1:2816635-2816654 None:intergenic 45.0%
TGAGAATTAGACGTTCGTGG+TGG + Chr1:2816632-2816651 None:intergenic 45.0%
TGCATTCTCCAGGAAAGAAG+AGG - Chr1:2818185-2818204 MsG0180000204.01.T01:intron 45.0%
TGGATGTTCTAGCAAGGGAA+GGG - Chr1:2816312-2816331 MsG0180000204.01.T01:intron 45.0%
TGGTCTTCCTCTTCTTACTC+GGG + Chr1:2816612-2816631 None:intergenic 45.0%
TGTGACAGGCCTTCTATTTG+AGG + Chr1:2817619-2817638 None:intergenic 45.0%
! ATTAGTGCCGTGGTTTGTGT+GGG - Chr1:2815866-2815885 MsG0180000204.01.T01:three_prime_UTR 45.0%
! CACTTATCAAAGGTGTGTCC+AGG - Chr1:2817339-2817358 MsG0180000204.01.T01:CDS 45.0%
! CATTTTACTTCACGCAAGGG+TGG - Chr1:2816112-2816131 MsG0180000204.01.T01:CDS 45.0%
! GGCACATTTTACTTCACGCA+AGG - Chr1:2816108-2816127 MsG0180000204.01.T01:CDS 45.0%
! TATTAGTGCCGTGGTTTGTG+TGG - Chr1:2815865-2815884 MsG0180000204.01.T01:three_prime_UTR 45.0%
!! GATTTGTTATGTGAACCGCC+TGG - Chr1:2817189-2817208 MsG0180000204.01.T01:CDS 45.0%
!! TCTGTTGGACTTTCGGTGTT+AGG - Chr1:2818924-2818943 MsG0180000204.01.T01:CDS 45.0%
!!! AGGCGGCAGCTTATTTTGTT+CGG - Chr1:2816247-2816266 MsG0180000204.01.T01:intron 45.0%
!!! ATATTTTGATTAATTAATTT+AGG + Chr1:2818788-2818807 None:intergenic 5.0%
!!! TTTTTATTAAAATTAATACA+TGG - Chr1:2817494-2817513 MsG0180000204.01.T01:CDS 5.0%
AAGAGGGGCTTGAGTTCTAC+AGG - Chr1:2818202-2818221 MsG0180000204.01.T01:intron 50.0%
ACAGAACTGGAGGCCATTGA+AGG - Chr1:2818268-2818287 MsG0180000204.01.T01:intron 50.0%
ACCACCTTGTTCAGTTTGGG+CGG + Chr1:2816293-2816312 None:intergenic 50.0%
ACGAAGACCCACACAAACCA+CGG + Chr1:2815876-2815895 None:intergenic 50.0%
ACTGTTCCGTCCCAAACAAC+TGG - Chr1:2816547-2816566 MsG0180000204.01.T01:intron 50.0%
AGAATGAAGTCACGCGTGTC+AGG + Chr1:2817372-2817391 None:intergenic 50.0%
AGACACCAGACATGTGACAC+TGG + Chr1:2817419-2817438 None:intergenic 50.0%
CAAATCAATGTCCTGCCAGG+CGG + Chr1:2817207-2817226 None:intergenic 50.0%
CAACTGGTAAACGGACAAGG+AGG - Chr1:2816563-2816582 MsG0180000204.01.T01:intron 50.0%
CAATGGCCTCCAGTTCTGTT+TGG + Chr1:2818267-2818286 None:intergenic 50.0%
CGAGAGTTTCTGTGAGAAGG+CGG - Chr1:2816230-2816249 MsG0180000204.01.T01:intron 50.0%
CTTGAGACGATGGAGCAAGA+TGG + Chr1:2817940-2817959 None:intergenic 50.0%
GAATGAAGTCACGCGTGTCA+GGG + Chr1:2817371-2817390 None:intergenic 50.0%
GCTAGCTGAGTCATCACCAA+TGG - Chr1:2819411-2819430 MsG0180000204.01.T01:CDS 50.0%
GGTGCCTTCTAGATCTAAGC+TGG + Chr1:2819388-2819407 None:intergenic 50.0%
GTGCGTAATTGTGTCGTCTG+AGG - Chr1:2818290-2818309 MsG0180000204.01.T01:intron 50.0%
GTGGATGTTCTAGCAAGGGA+AGG - Chr1:2816311-2816330 MsG0180000204.01.T01:intron 50.0%
TGGCGAGAGTTTCTGTGAGA+AGG - Chr1:2816227-2816246 MsG0180000204.01.T01:intron 50.0%
! GTTTGGGACGGAACAGTTGT+TGG + Chr1:2816544-2816563 None:intergenic 50.0%
! TCACTCCACCAGGACCTTTT+AGG + Chr1:2816059-2816078 None:intergenic 50.0%
! TGGTTTGTGTGGGTCTTCGT+AGG - Chr1:2815876-2815895 MsG0180000204.01.T01:three_prime_UTR 50.0%
!! AGGTGGTGGATGTTCTAGCA+AGG - Chr1:2816306-2816325 MsG0180000204.01.T01:intron 50.0%
!! CAGCCGTTTGGTTCTTCACA+TGG - Chr1:2819040-2819059 MsG0180000204.01.T01:CDS 50.0%
!! GGTGGTGGATGTTCTAGCAA+GGG - Chr1:2816307-2816326 MsG0180000204.01.T01:intron 50.0%
AAAGGGCTCTCCAAAGACGC+AGG - Chr1:2817584-2817603 MsG0180000204.01.T01:intron 55.0%
AAGGTCCTGGTGGAGTGACA+TGG - Chr1:2816061-2816080 MsG0180000204.01.T01:CDS 55.0%
ATGGAGGACTTACTGGTGGG+TGG - Chr1:2818026-2818045 MsG0180000204.01.T01:intron 55.0%
CAGTTCTGTTTGGGCAGCAC+CGG + Chr1:2818257-2818276 None:intergenic 55.0%
CGTCTGTCCCGAGTAAGAAG+AGG - Chr1:2816602-2816621 MsG0180000204.01.T01:intron 55.0%
CTCAAGCCCCTCTTCTTTCC+TGG + Chr1:2818196-2818215 None:intergenic 55.0%
CTTACTGCGGTGCATTCTCC+AGG - Chr1:2818175-2818194 MsG0180000204.01.T01:intron 55.0%
GCCCAAACTGAACAAGGTGG+TGG - Chr1:2816292-2816311 MsG0180000204.01.T01:intron 55.0%
GGAGAATGCACCGCAGTAAG+AGG + Chr1:2818175-2818194 None:intergenic 55.0%
GGTGATGACTCAGCTAGCAG+AGG + Chr1:2819409-2819428 None:intergenic 55.0%
GTGGTCCTAAAAGGTCCTGG+TGG - Chr1:2816051-2816070 MsG0180000204.01.T01:CDS 55.0%
TGCTGCCCAAACAGAACTGG+AGG - Chr1:2818258-2818277 MsG0180000204.01.T01:intron 55.0%
TGTTATGTGAACCGCCTGGC+AGG - Chr1:2817193-2817212 MsG0180000204.01.T01:CDS 55.0%
! TGCGTCTTTGGAGAGCCCTT+TGG + Chr1:2817585-2817604 None:intergenic 55.0%
CAGTCCCTGCTCGTCTGTCT+CGG + Chr1:2819265-2819284 None:intergenic 60.0%
GAAGTCACGCGTGTCAGGGT+CGG + Chr1:2817367-2817386 None:intergenic 60.0%
GCCGCCCAAACTGAACAAGG+TGG - Chr1:2816289-2816308 MsG0180000204.01.T01:intron 60.0%
GCTGCCGCCCAAACTGAACA+AGG - Chr1:2816286-2816305 MsG0180000204.01.T01:intron 60.0%
TTCAGTTTGGGCGGCAGCCT+CGG + Chr1:2816284-2816303 None:intergenic 60.0%
! AGAGCCCTTTGGAGACGCTG+GGG + Chr1:2817574-2817593 None:intergenic 60.0%
! GAGAGCCCTTTGGAGACGCT+GGG + Chr1:2817575-2817594 None:intergenic 60.0%
!! CGGTGCTGCCCAAACAGAAC+TGG - Chr1:2818255-2818274 MsG0180000204.01.T01:intron 60.0%
ACCTGCCCCAGCGTCTCCAA+AGG - Chr1:2817566-2817585 MsG0180000204.01.T01:intron 65.0%
AGGAGCCGAGACAGACGAGC+AGG - Chr1:2819257-2819276 MsG0180000204.01.T01:intron 65.0%
CCTGCCCCAGCGTCTCCAAA+GGG - Chr1:2817567-2817586 MsG0180000204.01.T01:intron 65.0%
GGAGCCGAGACAGACGAGCA+GGG - Chr1:2819258-2819277 MsG0180000204.01.T01:intron 65.0%
GGCTCAGGCAGCATGTACCG+AGG - Chr1:2817668-2817687 MsG0180000204.01.T01:intron 65.0%
! GGAGAGCCCTTTGGAGACGC+TGG + Chr1:2817576-2817595 None:intergenic 65.0%
GTTCGGAAGTGGGCACGCCG+AGG - Chr1:2816264-2816283 MsG0180000204.01.T01:intron 70.0%
! CCCTTTGGAGACGCTGGGGC+AGG + Chr1:2817570-2817589 None:intergenic 70.0%
CGCGTGTCAGGGTCGGACCC+TGG + Chr1:2817360-2817379 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 2815807 2819646 2815807 ID=MsG0180000204.01;Name=MsG0180000204.01
Chr1 mRNA 2815807 2819646 2815807 ID=MsG0180000204.01.T01;Parent=MsG0180000204.01;Name=MsG0180000204.01.T01;_AED=0.34;_eAED=0.38;_QI=0|0.4|0.5|1|1|1|6|227|435
Chr1 exon 2819560 2819646 2819560 ID=MsG0180000204.01.T01:exon:6426;Parent=MsG0180000204.01.T01
Chr1 exon 2819323 2819453 2819323 ID=MsG0180000204.01.T01:exon:6427;Parent=MsG0180000204.01.T01
Chr1 exon 2818840 2819204 2818840 ID=MsG0180000204.01.T01:exon:6428;Parent=MsG0180000204.01.T01
Chr1 exon 2817710 2817894 2817710 ID=MsG0180000204.01.T01:exon:6429;Parent=MsG0180000204.01.T01
Chr1 exon 2817164 2817542 2817164 ID=MsG0180000204.01.T01:exon:6430;Parent=MsG0180000204.01.T01
Chr1 exon 2815807 2816194 2815807 ID=MsG0180000204.01.T01:exon:6431;Parent=MsG0180000204.01.T01
Chr1 CDS 2819560 2819646 2819560 ID=MsG0180000204.01.T01:cds;Parent=MsG0180000204.01.T01
Chr1 CDS 2819323 2819453 2819323 ID=MsG0180000204.01.T01:cds;Parent=MsG0180000204.01.T01
Chr1 CDS 2818840 2819204 2818840 ID=MsG0180000204.01.T01:cds;Parent=MsG0180000204.01.T01
Chr1 CDS 2817710 2817894 2817710 ID=MsG0180000204.01.T01:cds;Parent=MsG0180000204.01.T01
Chr1 CDS 2817164 2817542 2817164 ID=MsG0180000204.01.T01:cds;Parent=MsG0180000204.01.T01
Chr1 CDS 2816034 2816194 2816034 ID=MsG0180000204.01.T01:cds;Parent=MsG0180000204.01.T01
Chr1 three_prime_UTR 2815807 2816033 2815807 ID=MsG0180000204.01.T01:three_prime_utr;Parent=MsG0180000204.01.T01
Gene Sequence

>MsG0180000204.01.T01

ATGGCTGTTTTTGAATCGGATAGTTATGATCTTCGTAACGCCGGTGTCAACATGTCAATATTAGTGCCGTGGTTTGTGTGGGTCTTCGCACTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGCTGCCTGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTGACATGGAATATAGGGCTGACAAGTAGAGACGGCACATTTTACTTCACGCAAGGGCGGCAGCTTATTTTGTTCGGAAGTGGGCACGCCGAGGCTGCCGCCCAAACTGAACAAGGTGGTGGATGTTCTAGCAAGGGAAGGGACACAAACAATTCTGTGGATGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACATGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCATTTGCTGTACCTTCTGAAACTACTAATGGAAAGACTTCTAATGCAGCTGTTGAATCTGCCACCCCTGAGCAATTAATGTCTGATGCAGCAGTCACTGAGACTGAGCCAACAACTGTTCCGTCCCAAACAACTGGTAAACGGACAAGGAGGCCTGTTTATGCTGTTGCGTCTGTCCCGAATGCTGAACCTGCCCCAGCGTCTCCAAAGGGCTCTCCAAAGACGCAGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGATGAGATTGAAAAAACTCTTCAGGTGGCTCAGGCAGCATGTACCGAGGAGAGCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTGCTCCATCGTCTCAAGATGTGATATTACGCATGGGTAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAGTATTTTGCGCTCGACAACAACCTTGAAGAGTTTGACGTGTGTTTGTTCAAACCAGCTGGTCATTTGCATGACATATTGATCTTAGAAATGAGCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTCCAGGAAAGAAGAGGGGCTTGAGTTCTACAGGAAAGAAGAGGGGAGTTAAGAGAACACTGACCGGTGCTGCCCAAACAGAACTGGAGGCCATTGAAGGAGCCGAGACAGACGAGCAGGGACTGCAAGCTGAAGATGATGAACTCTTATCTCAAATACGGGCCAAAAGAAACATAGTAAAATCATCCAAATACCTCAAGGATTATGTGGTACCAAAGAAGAAAACCAGCTTAGATCTAGAAGGCACCTCTGCTAGCTGA
Protein sequence

>MsG0180000204.01.T01

MAVFESDSYDLRNAGVNMSILVPWFVWVFALPKTFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGRQLILFGSGHAEAAAQTEQGGGCSSKGRDTNNSVDEVNTPSNGVDEGVSHEKSLHLNSIRVPFAVPSETTNGKTSNAAVESATPEQLMSDAAVTETEPTTVPSQTTGKRTRRPVYAVASVPNAEPAPASPKGSPKTQELYTSNRRPVTKDEIEKTLQVAQAACTEESLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRVVEEITPLTAVHSPGKKRGLSSTGKKRGVKRTLTGAAQTELEAIEGAETDEQGLQAEDDELLSQIRAKRNIVKSSKYLKDYVVPKKKTSLDLEGTSAS*