Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000276.01.T01 | XP_003589169.1 | 100 | 306 | 0 | 0 | 1 | 306 | 35 | 340 | 0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000276.01.T01 | Q9LDD1 | 29.839 | 248 | 159 | 4 | 74 | 306 | 86 | 333 | 2.76E-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000276.01.T01 | G7I3I5 | 100.000 | 306 | 0 | 0 | 1 | 306 | 35 | 340 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000276.01 | MsG0180001816.01 | 0.809234 | 2.092915e-50 | 1.222194e-47 |
| MsG0180000276.01 | MsG0180003428.01 | 0.807323 | 5.345904e-50 | 2.968764e-47 |
| MsG0180000276.01 | MsG0180004867.01 | 0.813923 | 2.001936e-51 | 1.324599e-48 |
| MsG0180000276.01 | MsG0180006069.01 | 0.805715 | 1.167725e-49 | 6.222322e-47 |
| MsG0180000276.01 | MsG0280007073.01 | 0.806780 | 6.964680e-50 | 3.813476e-47 |
| MsG0180000276.01 | MsG0280007579.01 | 0.819250 | 1.281605e-52 | 9.810859e-50 |
| MsG0180000276.01 | MsG0480018333.01 | 0.800246 | 1.576690e-48 | 7.305808e-46 |
| MsG0180000276.01 | MsG0480019816.01 | 0.819881 | 9.199597e-53 | 7.167525e-50 |
| MsG0180000276.01 | MsG0480022732.01 | 0.826271 | 2.973739e-54 | 2.775595e-51 |
| MsG0180000276.01 | MsG0580024275.01 | 0.826696 | 2.354158e-54 | 2.224033e-51 |
| MsG0180000276.01 | MsG0580024921.01 | 0.830930 | 2.224506e-55 | 2.378010e-52 |
| MsG0180000276.01 | MsG0580025143.01 | 0.823486 | 1.349871e-53 | 1.163853e-50 |
| MsG0180000276.01 | MsG0580029497.01 | 0.875816 | 2.285862e-68 | 1.082725e-64 |
| MsG0180000276.01 | MsG0680035575.01 | 0.823376 | 1.431883e-53 | 1.230630e-50 |
| MsG0180000276.01 | MsG0880043745.01 | 0.805364 | 1.383735e-49 | 7.306727e-47 |
| MsG0180000276.01 | MsG0880047148.01 | 0.812461 | 4.191656e-51 | 2.666872e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000276.01.T01 | MTR_1g019250 | 100.000 | 306 | 0 | 0 | 1 | 306 | 35 | 340 | 0.0 | 634 |
| MsG0180000276.01.T01 | MTR_5g013690 | 32.627 | 236 | 142 | 4 | 84 | 306 | 40 | 271 | 7.14e-34 | 125 |
| MsG0180000276.01.T01 | MTR_5g013690 | 32.627 | 236 | 142 | 4 | 84 | 306 | 103 | 334 | 7.28e-34 | 126 |
| MsG0180000276.01.T01 | MTR_2g069350 | 27.941 | 340 | 196 | 10 | 4 | 306 | 38 | 365 | 1.66e-33 | 126 |
| MsG0180000276.01.T01 | MTR_4g099060 | 30.980 | 255 | 149 | 5 | 72 | 306 | 38 | 285 | 7.85e-26 | 104 |
| MsG0180000276.01.T01 | MTR_4g099060 | 30.980 | 255 | 149 | 5 | 72 | 306 | 83 | 330 | 1.18e-25 | 104 |
| MsG0180000276.01.T01 | MTR_2g028830 | 29.947 | 187 | 130 | 1 | 111 | 296 | 122 | 308 | 4.93e-22 | 94.4 |
| MsG0180000276.01.T01 | MTR_4g083540 | 29.302 | 215 | 136 | 5 | 85 | 296 | 81 | 282 | 9.89e-20 | 87.8 |
| MsG0180000276.01.T01 | MTR_3g117970 | 32.386 | 176 | 95 | 4 | 119 | 294 | 32 | 183 | 4.21e-19 | 84.0 |
| MsG0180000276.01.T01 | MTR_4g036485 | 29.050 | 179 | 114 | 4 | 116 | 294 | 34 | 199 | 7.79e-18 | 80.9 |
| MsG0180000276.01.T01 | MTR_5g034280 | 41.346 | 104 | 58 | 2 | 131 | 232 | 15 | 117 | 1.03e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000276.01.T01 | AT1G45976 | 66.452 | 310 | 93 | 3 | 1 | 306 | 23 | 325 | 1.57e-150 | 425 |
| MsG0180000276.01.T01 | AT1G60610 | 37.449 | 243 | 124 | 4 | 84 | 306 | 105 | 339 | 2.53e-45 | 157 |
| MsG0180000276.01.T01 | AT1G60610 | 37.449 | 243 | 124 | 4 | 84 | 306 | 105 | 339 | 2.53e-45 | 157 |
| MsG0180000276.01.T01 | AT1G60610 | 37.449 | 243 | 124 | 4 | 84 | 306 | 105 | 339 | 2.53e-45 | 157 |
| MsG0180000276.01.T01 | AT1G60610 | 37.449 | 243 | 124 | 4 | 84 | 306 | 105 | 339 | 2.53e-45 | 157 |
| MsG0180000276.01.T01 | AT1G60610 | 37.449 | 243 | 124 | 4 | 84 | 306 | 105 | 339 | 2.53e-45 | 157 |
| MsG0180000276.01.T01 | AT1G10650 | 34.701 | 268 | 153 | 4 | 57 | 306 | 19 | 282 | 1.21e-40 | 143 |
| MsG0180000276.01.T01 | AT1G10650 | 34.701 | 268 | 153 | 4 | 57 | 306 | 75 | 338 | 1.60e-40 | 144 |
| MsG0180000276.01.T01 | AT3G12920 | 29.839 | 248 | 159 | 4 | 74 | 306 | 86 | 333 | 2.81e-29 | 114 |
| MsG0180000276.01.T01 | AT5G47050 | 32.618 | 233 | 139 | 5 | 81 | 305 | 76 | 298 | 4.64e-28 | 110 |
| MsG0180000276.01.T01 | AT1G32740 | 35.398 | 226 | 112 | 8 | 84 | 294 | 49 | 255 | 1.55e-27 | 108 |
| MsG0180000276.01.T01 | AT1G32740 | 35.398 | 226 | 112 | 8 | 84 | 294 | 49 | 255 | 1.55e-27 | 108 |
| MsG0180000276.01.T01 | AT1G32740 | 35.398 | 226 | 112 | 8 | 84 | 294 | 93 | 299 | 2.46e-27 | 108 |
| MsG0180000276.01.T01 | AT1G32740 | 35.398 | 226 | 112 | 8 | 84 | 294 | 82 | 288 | 2.72e-27 | 108 |
| MsG0180000276.01.T01 | AT4G17680 | 31.405 | 242 | 143 | 5 | 73 | 304 | 12 | 240 | 2.24e-26 | 104 |
| MsG0180000276.01.T01 | AT1G79110 | 32.365 | 241 | 139 | 4 | 90 | 306 | 113 | 353 | 4.46e-26 | 106 |
| MsG0180000276.01.T01 | AT1G79110 | 32.365 | 241 | 139 | 4 | 90 | 306 | 91 | 331 | 4.49e-26 | 105 |
| MsG0180000276.01.T01 | AT4G17680 | 31.466 | 232 | 138 | 4 | 81 | 304 | 94 | 312 | 4.76e-26 | 105 |
| MsG0180000276.01.T01 | AT4G35070 | 35.294 | 187 | 110 | 5 | 116 | 298 | 77 | 256 | 1.44e-25 | 103 |
| MsG0180000276.01.T01 | AT4G35070 | 35.294 | 187 | 110 | 5 | 116 | 298 | 22 | 201 | 2.49e-25 | 100 |
| MsG0180000276.01.T01 | AT1G79110 | 32.377 | 244 | 138 | 5 | 90 | 306 | 113 | 356 | 1.06e-24 | 102 |
| MsG0180000276.01.T01 | AT5G45100 | 29.954 | 217 | 115 | 5 | 107 | 306 | 69 | 265 | 2.85e-20 | 88.6 |
| MsG0180000276.01.T01 | AT4G17680 | 31.892 | 185 | 109 | 3 | 128 | 304 | 13 | 188 | 3.77e-20 | 86.7 |
| MsG0180000276.01.T01 | AT5G45100 | 29.954 | 217 | 115 | 5 | 107 | 306 | 96 | 292 | 4.55e-20 | 88.6 |
| MsG0180000276.01.T01 | AT4G19700 | 27.305 | 282 | 164 | 8 | 23 | 294 | 40 | 290 | 4.29e-17 | 80.5 |
Find 69 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATCAAGTCTTTCATAT+TGG | 0.300589 | 1:+3699952 | None:intergenic |
| GTTGATTTGCATTGGAATTT+CGG | 0.328434 | 1:-3701225 | MsG0180000276.01.T01:CDS |
| CGATCTGTGTCCACGGGGTT+AGG | 0.331116 | 1:-3701117 | MsG0180000276.01.T01:CDS |
| AAACATCAACAAGAGGAATA+TGG | 0.343288 | 1:-3700197 | MsG0180000276.01.T01:CDS |
| CTCCATGCCGATGAATTTAG+AGG | 0.351654 | 1:+3699820 | None:intergenic |
| TCGGCTTTATTGTCTCTCAT+AGG | 0.391703 | 1:-3701054 | MsG0180000276.01.T01:CDS |
| TGCTCCGGGTCCTGTCATTC+CGG | 0.393035 | 1:-3701268 | MsG0180000276.01.T01:CDS |
| CATGGAGGTCTACATGTAAC+TGG | 0.398646 | 1:-3699804 | MsG0180000276.01.T01:exon |
| CGGCTTTATTGTCTCTCATA+GGG | 0.421365 | 1:-3701053 | MsG0180000276.01.T01:CDS |
| AACACTCGCCTGGCTTCAAC+AGG | 0.433505 | 1:-3701081 | MsG0180000276.01.T01:CDS |
| TATGGAACTTGAAGATCAAA+TGG | 0.436027 | 1:-3700179 | MsG0180000276.01.T01:CDS |
| GAGGAAAAGACTAAAAGAAC+AGG | 0.439039 | 1:-3701190 | MsG0180000276.01.T01:CDS |
| TTTGCATTGGAATTTCGGTT+TGG | 0.453573 | 1:-3701220 | MsG0180000276.01.T01:CDS |
| CTTCTTTACTGTCCCTACCT+TGG | 0.456069 | 1:+3700059 | None:intergenic |
| TGCATACATGGAGGAATGTA+AGG | 0.466674 | 1:+3701765 | None:intergenic |
| GAAAGACTTGATGAAATGTA+AGG | 0.468795 | 1:-3699945 | MsG0180000276.01.T01:CDS |
| GGTCCTGTCATTCCGGCTGA+TGG | 0.469575 | 1:-3701261 | MsG0180000276.01.T01:CDS |
| CAACCTCGATCTGTGTCCAC+GGG | 0.471862 | 1:-3701123 | MsG0180000276.01.T01:CDS |
| GATACAGCTTCTTGCTGTAA+TGG | 0.478491 | 1:-3700013 | MsG0180000276.01.T01:CDS |
| CTTCCATCAGCCGGAATGAC+AGG | 0.496376 | 1:+3701258 | None:intergenic |
| CAAGGTAGGGACAGTAAAGA+AGG | 0.497061 | 1:-3700058 | MsG0180000276.01.T01:CDS |
| TGATCGTGAGTTACAGCAGC+AGG | 0.505797 | 1:-3701022 | MsG0180000276.01.T01:CDS |
| GCAACCTCGATCTGTGTCCA+CGG | 0.508164 | 1:-3701124 | MsG0180000276.01.T01:CDS |
| AATTTAGAGGATTGACATAG+AGG | 0.508849 | 1:+3699833 | None:intergenic |
| TCTCAAGTTTAACCTCCAAC+AGG | 0.509968 | 1:-3700089 | MsG0180000276.01.T01:CDS |
| ATGGTGGTGTTGATTTGCAT+TGG | 0.512381 | 1:-3701233 | MsG0180000276.01.T01:CDS |
| CCGAGTCTCCTGTTGAAGCC+AGG | 0.516637 | 1:+3701073 | None:intergenic |
| AAAACTTCGCGAGAAAGAAA+CGG | 0.522431 | 1:-3700227 | MsG0180000276.01.T01:CDS |
| GTCGCTCGATAACACTCGCC+TGG | 0.522524 | 1:-3701091 | MsG0180000276.01.T01:CDS |
| GGACAGATTTCTCAAACTGC+AGG | 0.527660 | 1:-3700989 | MsG0180000276.01.T01:intron |
| TACCTTGGAGATATGCCTGT+TGG | 0.532431 | 1:+3700074 | None:intergenic |
| ATCCTCTAAATTCATCGGCA+TGG | 0.537187 | 1:-3699822 | MsG0180000276.01.T01:CDS |
| AGGTCAGATGTCGCAGCAGA+TGG | 0.539736 | 1:-3701832 | None:intergenic |
| CTTGGAGATATGCCTGTTGG+AGG | 0.541227 | 1:+3700077 | None:intergenic |
| CAGAGGCAAAGATGCTTGCA+AGG | 0.548296 | 1:+3699887 | None:intergenic |
| TGTCAATCCTCTAAATTCAT+CGG | 0.564430 | 1:-3699827 | MsG0180000276.01.T01:CDS |
| GACTGATCTTGCAAATCAGT+AGG | 0.565941 | 1:+3701798 | None:intergenic |
| AGGGACAGTAAAGAAGGGTG+TGG | 0.567717 | 1:-3700052 | MsG0180000276.01.T01:CDS |
| CCTGGCTTCAACAGGAGACT+CGG | 0.567720 | 1:-3701073 | MsG0180000276.01.T01:CDS |
| CCACCATCACTTCCATCAGC+CGG | 0.574524 | 1:+3701249 | None:intergenic |
| AACAGGCATATCTCCAAGGT+AGG | 0.579800 | 1:-3700072 | MsG0180000276.01.T01:CDS |
| TAATTCTCAGATATCTTCTG+TGG | 0.580087 | 1:-3701154 | MsG0180000276.01.T01:CDS |
| TCAGCCGGAATGACAGGACC+CGG | 0.584748 | 1:+3701264 | None:intergenic |
| GAACAGCTAAGTGTAGAAGC+AGG | 0.592248 | 1:-3700157 | MsG0180000276.01.T01:CDS |
| TCTAATAGGGTGAACAATTG+CGG | 0.596973 | 1:-3700321 | MsG0180000276.01.T01:intron |
| ACAGCAGCAGGATTTAGAGA+TGG | 0.603378 | 1:-3701010 | MsG0180000276.01.T01:CDS |
| TAAGTGTAGAAGCAGGCGCA+TGG | 0.605128 | 1:-3700150 | MsG0180000276.01.T01:CDS |
| TGTTTCAATCATTGAAGACA+AGG | 0.609124 | 1:-3700257 | MsG0180000276.01.T01:CDS |
| ACTGATCTTGCAAATCAGTA+GGG | 0.612381 | 1:+3701799 | None:intergenic |
| CTCCAACAGGCATATCTCCA+AGG | 0.619146 | 1:-3700076 | MsG0180000276.01.T01:CDS |
| TACTTTCACAATCTTTACAG+AGG | 0.619763 | 1:+3699870 | None:intergenic |
| ACAGGCATATCTCCAAGGTA+GGG | 0.623265 | 1:-3700071 | MsG0180000276.01.T01:CDS |
| CCGGCTGATGGAAGTGATGG+TGG | 0.631778 | 1:-3701249 | MsG0180000276.01.T01:CDS |
| AGGTAGAAAACATCAACAAG+AGG | 0.632388 | 1:-3700204 | MsG0180000276.01.T01:CDS |
| CAGAGTCAACGAAGTGACGA+TGG | 0.636128 | 1:-3699918 | MsG0180000276.01.T01:CDS |
| CTCTAAATTCATCGGCATGG+AGG | 0.640451 | 1:-3699819 | MsG0180000276.01.T01:CDS |
| ATTCCGGCTGATGGAAGTGA+TGG | 0.641493 | 1:-3701252 | MsG0180000276.01.T01:CDS |
| GGCTTTATTGTCTCTCATAG+GGG | 0.643215 | 1:-3701052 | MsG0180000276.01.T01:CDS |
| AAGGTAGGGACAGTAAAGAA+GGG | 0.646022 | 1:-3700057 | MsG0180000276.01.T01:CDS |
| TGTCACGGTACTTGTTACAA+TGG | 0.651312 | 1:+3699684 | None:intergenic |
| AAACTAGTTACAATGTGTCA+CGG | 0.654021 | 1:+3699669 | None:intergenic |
| AACCCCGTGGACACAGATCG+AGG | 0.671438 | 1:+3701120 | None:intergenic |
| ATTTCGGTTTGGAACCAGAG+AGG | 0.674088 | 1:-3701209 | MsG0180000276.01.T01:CDS |
| AACCTCGATCTGTGTCCACG+GGG | 0.677662 | 1:-3701122 | MsG0180000276.01.T01:CDS |
| ACTATGATAAGCAACAACAC+AGG | 0.683625 | 1:+3699729 | None:intergenic |
| GAGCGACAATCCTAACCCCG+TGG | 0.690626 | 1:+3701107 | None:intergenic |
| AGAAGGGTGTGGTGACAGCG+AGG | 0.695907 | 1:-3700041 | MsG0180000276.01.T01:CDS |
| ACTTCGCGAGAAAGAAACGG+AGG | 0.727027 | 1:-3700224 | MsG0180000276.01.T01:CDS |
| ATACATGGAGGAATGTAAGG+TGG | 0.751566 | 1:+3701768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTGTAAATATTAAATAATA+TGG | + | Chr1:3700588-3700607 | None:intergenic | 10.0% |
| !!! | TAATGAAAAATATGAATTTT+TGG | - | Chr1:3699764-3699783 | MsG0180000276.01.T01:three_prime_UTR | 10.0% |
| !!! | TATTTTGTTTTTGATTTTTT+GGG | - | Chr1:3700109-3700128 | MsG0180000276.01.T01:CDS | 10.0% |
| !!! | TTAAAAATTTCAATTTTTAG+AGG | + | Chr1:3699747-3699766 | None:intergenic | 10.0% |
| !! | TAATTAATTTCTCTCTAATA+GGG | - | Chr1:3701089-3701108 | MsG0180000276.01.T01:CDS | 15.0% |
| !! | TTTAATTCAAATAACCAAAA+GGG | + | Chr1:3699930-3699949 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTTGATTTTTTG+GGG | - | Chr1:3700110-3700129 | MsG0180000276.01.T01:CDS | 15.0% |
| !!! | CTATTTTGTTTTTGATTTTT+TGG | - | Chr1:3700108-3700127 | MsG0180000276.01.T01:CDS | 15.0% |
| !!! | TATTCAGTTTTAGTAAATTT+TGG | - | Chr1:3701813-3701832 | MsG0180000276.01.T01:CDS | 15.0% |
| !!! | TTTTAATTCAAATAACCAAA+AGG | + | Chr1:3699931-3699950 | None:intergenic | 15.0% |
| !! | AAATGTAAATTCATCATGAT+CGG | - | Chr1:3700554-3700573 | MsG0180000276.01.T01:intron | 20.0% |
| !! | CTAATTAATTTCTCTCTAAT+AGG | - | Chr1:3701088-3701107 | MsG0180000276.01.T01:CDS | 20.0% |
| !!! | AACTGGATATTTTATTTCAA+CGG | - | Chr1:3701636-3701655 | MsG0180000276.01.T01:intron | 20.0% |
| !!! | ATTTTCTTTAGGTTTTTCTT+AGG | - | Chr1:3699884-3699903 | MsG0180000276.01.T01:CDS | 20.0% |
| !!! | GGGTTTTTAGATTTAATTTT+GGG | - | Chr1:3700045-3700064 | MsG0180000276.01.T01:CDS | 20.0% |
| !!! | GTCTATTTAGTATTTTCTTT+AGG | - | Chr1:3699873-3699892 | MsG0180000276.01.T01:CDS | 20.0% |
| !!! | TTCTTTAGCATTTTATTGAA+GGG | - | Chr1:3700024-3700043 | MsG0180000276.01.T01:CDS | 20.0% |
| !!! | TTTCATATTGGAATTTTCAT+TGG | + | Chr1:3701462-3701481 | None:intergenic | 20.0% |
| !!! | TTTCTTTAGCATTTTATTGA+AGG | - | Chr1:3700023-3700042 | MsG0180000276.01.T01:CDS | 20.0% |
| !!! | TTTTCTTTAGGTTTTTCTTA+GGG | - | Chr1:3699885-3699904 | MsG0180000276.01.T01:CDS | 20.0% |
| !!! | TTTTGTTTTTGATTTTTTGG+GGG | - | Chr1:3700111-3700130 | MsG0180000276.01.T01:CDS | 20.0% |
| ! | AAATCATTCTACAACACAAA+AGG | + | Chr1:3699826-3699845 | None:intergenic | 25.0% |
| ! | TTCTTCATAGATGCTAAATT+AGG | + | Chr1:3701034-3701053 | None:intergenic | 25.0% |
| ! | TTTCATCAAGTCTTTCATAT+TGG | + | Chr1:3701474-3701493 | None:intergenic | 25.0% |
| !! | AATCATGTTTTCGTTATATC+TGG | + | Chr1:3701309-3701328 | None:intergenic | 25.0% |
| !! | TCTTTAGCATTTTATTGAAG+GGG | - | Chr1:3700025-3700044 | MsG0180000276.01.T01:CDS | 25.0% |
| !!! | AACAATTTTAGAGAAAGTTC+AGG | - | Chr1:3701127-3701146 | MsG0180000276.01.T01:CDS | 25.0% |
| !!! | ACTAAAAGAACAGGATTTTT+TGG | - | Chr1:3700242-3700261 | MsG0180000276.01.T01:CDS | 25.0% |
| !!! | CAGTTTTAGTAAATTTTGGA+AGG | - | Chr1:3701817-3701836 | MsG0180000276.01.T01:CDS | 25.0% |
| !!! | GGGGTTTTTAGATTTAATTT+TGG | - | Chr1:3700044-3700063 | MsG0180000276.01.T01:CDS | 25.0% |
| !!! | TTAGCATCTTATTGGTTTAT+GGG | - | Chr1:3700481-3700500 | MsG0180000276.01.T01:intron | 25.0% |
| !!! | TTTAGCATCTTATTGGTTTA+TGG | - | Chr1:3700480-3700499 | MsG0180000276.01.T01:intron | 25.0% |
| !!! | TTTCTTTAGGTTTTTCTTAG+GGG | - | Chr1:3699886-3699905 | MsG0180000276.01.T01:CDS | 25.0% |
| AAACATCAACAAGAGGAATA+TGG | - | Chr1:3701226-3701245 | MsG0180000276.01.T01:CDS | 30.0% | |
| AAACTAGTTACAATGTGTCA+CGG | + | Chr1:3701757-3701776 | None:intergenic | 30.0% | |
| AATTTAGAGGATTGACATAG+AGG | + | Chr1:3701593-3701612 | None:intergenic | 30.0% | |
| AGATGAAGAATTTGCATACA+TGG | + | Chr1:3699673-3699692 | None:intergenic | 30.0% | |
| GAAAGACTTGATGAAATGTA+AGG | - | Chr1:3701478-3701497 | MsG0180000276.01.T01:intron | 30.0% | |
| TAATTCTCAGATATCTTCTG+TGG | - | Chr1:3700269-3700288 | MsG0180000276.01.T01:CDS | 30.0% | |
| TACTTTCACAATCTTTACAG+AGG | + | Chr1:3701556-3701575 | None:intergenic | 30.0% | |
| TATGGAACTTGAAGATCAAA+TGG | - | Chr1:3701244-3701263 | MsG0180000276.01.T01:CDS | 30.0% | |
| TGTCAATCCTCTAAATTCAT+CGG | - | Chr1:3701596-3701615 | MsG0180000276.01.T01:intron | 30.0% | |
| TGTTTCAATCATTGAAGACA+AGG | - | Chr1:3701166-3701185 | MsG0180000276.01.T01:CDS | 30.0% | |
| TTGACTCAAAATGACCAAAA+GGG | + | Chr1:3699796-3699815 | None:intergenic | 30.0% | |
| TTTGACTCAAAATGACCAAA+AGG | + | Chr1:3699797-3699816 | None:intergenic | 30.0% | |
| ! | CACAATCTTTTCTCTATCTT+TGG | + | Chr1:3700794-3700813 | None:intergenic | 30.0% |
| ! | TGATTTGTGAAGTAATCGAT+TGG | + | Chr1:3700896-3700915 | None:intergenic | 30.0% |
| ! | TGTCTAGTTTAGCATCTTAT+TGG | - | Chr1:3700473-3700492 | MsG0180000276.01.T01:intron | 30.0% |
| ! | TTTTCTCTATCTTTGGACAA+TGG | + | Chr1:3700787-3700806 | None:intergenic | 30.0% |
| !! | GTTGATTTGCATTGGAATTT+CGG | - | Chr1:3700198-3700217 | MsG0180000276.01.T01:CDS | 30.0% |
| !! | TTTTTGTGCTTGTTAGACAA+TGG | - | Chr1:3700736-3700755 | MsG0180000276.01.T01:intron | 30.0% |
| AAAACTTCGCGAGAAAGAAA+CGG | - | Chr1:3701196-3701215 | MsG0180000276.01.T01:CDS | 35.0% | |
| AATTCATCATGATCGGTAAC+TGG | - | Chr1:3700561-3700580 | MsG0180000276.01.T01:intron | 35.0% | |
| ACTATGATAAGCAACAACAC+AGG | + | Chr1:3701697-3701716 | None:intergenic | 35.0% | |
| ACTGATCTTGCAAATCAGTA+GGG | + | Chr1:3699627-3699646 | None:intergenic | 35.0% | |
| AGGTAGAAAACATCAACAAG+AGG | - | Chr1:3701219-3701238 | MsG0180000276.01.T01:CDS | 35.0% | |
| AGTCACAACACATGAAATGT+AGG | + | Chr1:3700090-3700109 | None:intergenic | 35.0% | |
| CTCTTACGAGTACAATATAC+AGG | + | Chr1:3701011-3701030 | None:intergenic | 35.0% | |
| GAGGAAAAGACTAAAAGAAC+AGG | - | Chr1:3700233-3700252 | MsG0180000276.01.T01:CDS | 35.0% | |
| GGTTAGAATGCATCACAATA+CGG | + | Chr1:3700990-3701009 | None:intergenic | 35.0% | |
| GTCACAACACATGAAATGTA+GGG | + | Chr1:3700089-3700108 | None:intergenic | 35.0% | |
| TCTAATAGGGTGAACAATTG+CGG | - | Chr1:3701102-3701121 | MsG0180000276.01.T01:CDS | 35.0% | |
| TGAAGAATTTGCATACATGG+AGG | + | Chr1:3699670-3699689 | None:intergenic | 35.0% | |
| TTTGCATTGGAATTTCGGTT+TGG | - | Chr1:3700203-3700222 | MsG0180000276.01.T01:CDS | 35.0% | |
| ! | GTAGATATAAGCTACCCTTT+TGG | - | Chr1:3699913-3699932 | MsG0180000276.01.T01:CDS | 35.0% |
| ! | GTATGCTGATGATTTGTAAG+TGG | - | Chr1:3700621-3700640 | MsG0180000276.01.T01:intron | 35.0% |
| ! | TTTCTTTCTCGCGAAGTTTT+TGG | + | Chr1:3701196-3701215 | None:intergenic | 35.0% |
| !! | TCTTTTAGTCTTTTCCTCTC+TGG | + | Chr1:3700231-3700250 | None:intergenic | 35.0% |
| !!! | ATTTTTGGTAGCTACCCTTT+TGG | - | Chr1:3699779-3699798 | MsG0180000276.01.T01:three_prime_UTR | 35.0% |
| AAGGTAGGGACAGTAAAGAA+GGG | - | Chr1:3701366-3701385 | MsG0180000276.01.T01:intron | 40.0% | |
| ATACATGGAGGAATGTAAGG+TGG | + | Chr1:3699658-3699677 | None:intergenic | 40.0% | |
| ATCCTCTAAATTCATCGGCA+TGG | - | Chr1:3701601-3701620 | MsG0180000276.01.T01:intron | 40.0% | |
| GACTGATCTTGCAAATCAGT+AGG | + | Chr1:3699628-3699647 | None:intergenic | 40.0% | |
| TCTCAAGTTTAACCTCCAAC+AGG | - | Chr1:3701334-3701353 | MsG0180000276.01.T01:intron | 40.0% | |
| TGCATACATGGAGGAATGTA+AGG | + | Chr1:3699661-3699680 | None:intergenic | 40.0% | |
| ! | GATACAGCTTCTTGCTGTAA+TGG | - | Chr1:3701410-3701429 | MsG0180000276.01.T01:intron | 40.0% |
| ! | TGTCACGGTACTTGTTACAA+TGG | + | Chr1:3701742-3701761 | None:intergenic | 40.0% |
| !! | ATGGTGGTGTTGATTTGCAT+TGG | - | Chr1:3700190-3700209 | MsG0180000276.01.T01:CDS | 40.0% |
| !! | CGGCTTTATTGTCTCTCATA+GGG | - | Chr1:3700370-3700389 | MsG0180000276.01.T01:intron | 40.0% |
| !! | GGCTTTATTGTCTCTCATAG+GGG | - | Chr1:3700371-3700390 | MsG0180000276.01.T01:intron | 40.0% |
| !! | TCGGCTTTATTGTCTCTCAT+AGG | - | Chr1:3700369-3700388 | MsG0180000276.01.T01:intron | 40.0% |
| !!! | TCATGTAGTTGGTTTTGCTC+CGG | - | Chr1:3700140-3700159 | MsG0180000276.01.T01:CDS | 40.0% |
| AACAGGCATATCTCCAAGGT+AGG | - | Chr1:3701351-3701370 | MsG0180000276.01.T01:intron | 45.0% | |
| ACAGCAGCAGGATTTAGAGA+TGG | - | Chr1:3700413-3700432 | MsG0180000276.01.T01:intron | 45.0% | |
| ACAGGCATATCTCCAAGGTA+GGG | - | Chr1:3701352-3701371 | MsG0180000276.01.T01:intron | 45.0% | |
| CAAGGTAGGGACAGTAAAGA+AGG | - | Chr1:3701365-3701384 | MsG0180000276.01.T01:intron | 45.0% | |
| CATGGAGGTCTACATGTAAC+TGG | - | Chr1:3701619-3701638 | MsG0180000276.01.T01:intron | 45.0% | |
| CTCCATGCCGATGAATTTAG+AGG | + | Chr1:3701606-3701625 | None:intergenic | 45.0% | |
| CTCTAAATTCATCGGCATGG+AGG | - | Chr1:3701604-3701623 | MsG0180000276.01.T01:intron | 45.0% | |
| CTTCTTTACTGTCCCTACCT+TGG | + | Chr1:3701367-3701386 | None:intergenic | 45.0% | |
| GAACAGCTAAGTGTAGAAGC+AGG | - | Chr1:3701266-3701285 | MsG0180000276.01.T01:CDS | 45.0% | |
| GGACAGATTTCTCAAACTGC+AGG | - | Chr1:3700434-3700453 | MsG0180000276.01.T01:intron | 45.0% | |
| TACCTTGGAGATATGCCTGT+TGG | + | Chr1:3701352-3701371 | None:intergenic | 45.0% | |
| ! | GGGGGTTTAGTTCATGTAGT+TGG | - | Chr1:3700129-3700148 | MsG0180000276.01.T01:CDS | 45.0% |
| !! | ATTTCGGTTTGGAACCAGAG+AGG | - | Chr1:3700214-3700233 | MsG0180000276.01.T01:CDS | 45.0% |
| !! | CTTTCTCGCGAAGTTTTTGG+AGG | + | Chr1:3701193-3701212 | None:intergenic | 45.0% |
| !!! | CATGTAGTTGGTTTTGCTCC+GGG | - | Chr1:3700141-3700160 | MsG0180000276.01.T01:CDS | 45.0% |
| ACTTCGCGAGAAAGAAACGG+AGG | - | Chr1:3701199-3701218 | MsG0180000276.01.T01:CDS | 50.0% | |
| AGGGACAGTAAAGAAGGGTG+TGG | - | Chr1:3701371-3701390 | MsG0180000276.01.T01:intron | 50.0% | |
| ATTCCGGCTGATGGAAGTGA+TGG | - | Chr1:3700171-3700190 | MsG0180000276.01.T01:CDS | 50.0% | |
| CAGAGGCAAAGATGCTTGCA+AGG | + | Chr1:3701539-3701558 | None:intergenic | 50.0% | |
| CAGAGTCAACGAAGTGACGA+TGG | - | Chr1:3701505-3701524 | MsG0180000276.01.T01:intron | 50.0% | |
| CTCCAACAGGCATATCTCCA+AGG | - | Chr1:3701347-3701366 | MsG0180000276.01.T01:intron | 50.0% | |
| CTTGGAGATATGCCTGTTGG+AGG | + | Chr1:3701349-3701368 | None:intergenic | 50.0% | |
| TAAGTGTAGAAGCAGGCGCA+TGG | - | Chr1:3701273-3701292 | MsG0180000276.01.T01:CDS | 50.0% | |
| TGATCGTGAGTTACAGCAGC+AGG | - | Chr1:3700401-3700420 | MsG0180000276.01.T01:intron | 50.0% | |
| ! | CTCAAACTGCAGGTTAGCTC+AGG | - | Chr1:3700444-3700463 | MsG0180000276.01.T01:intron | 50.0% |
| AACACTCGCCTGGCTTCAAC+AGG | - | Chr1:3700342-3700361 | MsG0180000276.01.T01:intron | 55.0% | |
| AACCTCGATCTGTGTCCACG+GGG | - | Chr1:3700301-3700320 | MsG0180000276.01.T01:CDS | 55.0% | |
| CAACCTCGATCTGTGTCCAC+GGG | - | Chr1:3700300-3700319 | MsG0180000276.01.T01:CDS | 55.0% | |
| CCACCATCACTTCCATCAGC+CGG | + | Chr1:3700177-3700196 | None:intergenic | 55.0% | |
| CCTGGCTTCAACAGGAGACT+CGG | - | Chr1:3700350-3700369 | MsG0180000276.01.T01:intron | 55.0% | |
| CTTCCATCAGCCGGAATGAC+AGG | + | Chr1:3700168-3700187 | None:intergenic | 55.0% | |
| GCAACCTCGATCTGTGTCCA+CGG | - | Chr1:3700299-3700318 | MsG0180000276.01.T01:CDS | 55.0% | |
| AACCCCGTGGACACAGATCG+AGG | + | Chr1:3700306-3700325 | None:intergenic | 60.0% | |
| CCGAGTCTCCTGTTGAAGCC+AGG | + | Chr1:3700353-3700372 | None:intergenic | 60.0% | |
| CCGGCTGATGGAAGTGATGG+TGG | - | Chr1:3700174-3700193 | MsG0180000276.01.T01:CDS | 60.0% | |
| CGATCTGTGTCCACGGGGTT+AGG | - | Chr1:3700306-3700325 | MsG0180000276.01.T01:CDS | 60.0% | |
| GAGCGACAATCCTAACCCCG+TGG | + | Chr1:3700319-3700338 | None:intergenic | 60.0% | |
| GGTCCTGTCATTCCGGCTGA+TGG | - | Chr1:3700162-3700181 | MsG0180000276.01.T01:CDS | 60.0% | |
| GTCGCTCGATAACACTCGCC+TGG | - | Chr1:3700332-3700351 | MsG0180000276.01.T01:intron | 60.0% | |
| TCAGCCGGAATGACAGGACC+CGG | + | Chr1:3700162-3700181 | None:intergenic | 60.0% | |
| TGCTCCGGGTCCTGTCATTC+CGG | - | Chr1:3700155-3700174 | MsG0180000276.01.T01:CDS | 60.0% | |
| ! | AGAAGGGTGTGGTGACAGCG+AGG | - | Chr1:3701382-3701401 | MsG0180000276.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 3699598 | 3701847 | 3699598 | ID=MsG0180000276.01;Name=MsG0180000276.01 |
| Chr1 | mRNA | 3699598 | 3701847 | 3699598 | ID=MsG0180000276.01.T01;Parent=MsG0180000276.01;Name=MsG0180000276.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0.5|0.55|0.88|1|1|9|210|306 |
| Chr1 | exon | 3701772 | 3701847 | 3701772 | ID=MsG0180000276.01.T01:exon:5899;Parent=MsG0180000276.01.T01 |
| Chr1 | exon | 3700990 | 3701306 | 3700990 | ID=MsG0180000276.01.T01:exon:5900;Parent=MsG0180000276.01.T01 |
| Chr1 | exon | 3699598 | 3700335 | 3699598 | ID=MsG0180000276.01.T01:exon:5901;Parent=MsG0180000276.01.T01 |
| Chr1 | CDS | 3701772 | 3701847 | 3701772 | ID=MsG0180000276.01.T01:cds;Parent=MsG0180000276.01.T01 |
| Chr1 | CDS | 3700990 | 3701306 | 3700990 | ID=MsG0180000276.01.T01:cds;Parent=MsG0180000276.01.T01 |
| Chr1 | CDS | 3699808 | 3700335 | 3699808 | ID=MsG0180000276.01.T01:cds;Parent=MsG0180000276.01.T01 |
| Chr1 | three_prime_UTR | 3699598 | 3699807 | 3699598 | ID=MsG0180000276.01.T01:three_prime_utr;Parent=MsG0180000276.01.T01 |
| Gene Sequence |
| Protein sequence |
