AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000350.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000350.01.T01 MTR_1g017490 95.614 342 15 0 174 515 312 653 0.0 662
MsG0180000350.01.T01 MTR_1g017490 73.529 238 4 4 1 179 1 238 1.23e-107 335
MsG0180000350.01.T01 MTR_1g017490 95.614 342 15 0 174 515 179 520 0.0 659
MsG0180000350.01.T01 MTR_1g017490 92.381 105 2 1 81 179 1 105 4.78e-64 217
MsG0180000350.01.T01 MTR_2g041430 52.632 95 45 0 85 179 7 101 8.00e-28 114
MsG0180000350.01.T01 MTR_2g041430 52.632 95 45 0 85 179 7 101 8.14e-28 114
MsG0180000350.01.T01 MTR_2g041430 52.632 95 45 0 85 179 7 101 8.24e-28 114
MsG0180000350.01.T01 MTR_8g020560 47.872 94 45 1 86 179 12 101 2.35e-26 110
MsG0180000350.01.T01 MTR_4g125490 52.083 96 40 2 85 179 9 99 4.05e-26 110
MsG0180000350.01.T01 MTR_5g027030 53.684 95 28 2 85 179 16 94 1.48e-24 104
MsG0180000350.01.T01 MTR_0001s0490 49.474 95 43 2 85 179 25 114 2.92e-22 98.2
MsG0180000350.01.T01 MTR_3g092330 49.485 97 23 3 85 179 113 185 3.58e-20 94.0
MsG0180000350.01.T01 MTR_7g104050 48.454 97 46 2 83 179 76 168 8.32e-20 91.3
MsG0180000350.01.T01 MTR_7g104050 48.485 99 43 3 83 179 76 168 9.11e-20 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000350.01.T01 AT2G22840 36.282 554 159 22 27 473 22 488 6.48e-65 220
MsG0180000350.01.T01 AT4G37740 38.976 449 146 18 84 490 163 525 2.28e-63 216
MsG0180000350.01.T01 AT3G13960 56.842 95 37 1 85 179 16 106 3.58e-31 125
MsG0180000350.01.T01 AT2G06200 49.505 101 44 2 85 179 6 105 1.67e-22 97.1
MsG0180000350.01.T01 AT2G06200 48.077 104 47 2 85 182 45 147 2.69e-22 97.4
MsG0180000350.01.T01 AT2G36400 50.515 97 47 1 83 179 74 169 4.53e-21 95.9
MsG0180000350.01.T01 AT3G52910 45.631 103 44 2 83 179 80 176 2.07e-19 90.5
MsG0180000350.01.T01 AT4G24150 44.330 97 54 0 83 179 109 205 3.54e-17 84.3
MsG0180000350.01.T01 AT4G24150 44.330 97 54 0 83 179 147 243 5.10e-17 84.0
MsG0180000350.01.T01 AT4G24150 41.803 122 46 5 83 179 147 268 1.05e-14 77.0
MsG0180000350.01.T01 AT5G53660 41.584 101 38 2 79 179 53 132 1.61e-13 72.4
MsG0180000350.01.T01 AT2G45480 41.935 93 46 3 89 179 28 114 4.86e-12 67.4
MsG0180000350.01.T01 AT2G45480 45.882 85 38 3 89 171 28 106 8.85e-12 67.4
MsG0180000350.01.T01 AT2G45480 45.882 85 38 3 89 171 26 104 9.03e-12 67.4

Find 138 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTCTCCCAAGTTAT+TGG 0.152774 1:+4754143 None:intergenic
AAGAATATGAACAACCTTAT+TGG 0.157641 1:-4755339 MsG0180000350.01.T01:CDS
AATAAGGTTGTTCATATTCT+TGG 0.221832 1:+4755341 None:intergenic
AACCATCAGTCATGAGATTT+AGG 0.225448 1:+4754024 None:intergenic
TTCTTCATCTTGTTCCTCTA+AGG 0.256559 1:+4753810 None:intergenic
ATGATATTACATTACATATA+TGG 0.264920 1:-4753699 MsG0180000350.01.T01:three_prime_UTR
GTGATCATCATTTGCATTGT+AGG 0.266573 1:+4754076 None:intergenic
CTTGGTGGAGTGAGTTTAGA+AGG 0.269348 1:-4757692 MsG0180000350.01.T01:CDS
TCTGTTCTCCTACACCTTCC+TGG 0.276185 1:+4755645 None:intergenic
ATGCTTCCTTTACTCCTTAG+AGG 0.278362 1:-4753824 MsG0180000350.01.T01:exon
TTTCCTTTGGTTTCAACTCT+AGG 0.292261 1:+4754666 None:intergenic
ATACTACAAAGCAAGCTAAT+TGG 0.301022 1:-4754169 MsG0180000350.01.T01:CDS
CTCCTACACCTTCCTGGTTC+CGG 0.301178 1:+4755651 None:intergenic
ACAGAAAACCTCCACTTTGC+TGG 0.307229 1:-4754543 MsG0180000350.01.T01:CDS
AAGCATTATCTTGTCCAATA+AGG 0.312606 1:+4755325 None:intergenic
ATACCAATGCCAACATGATT+TGG 0.330711 1:-4753626 MsG0180000350.01.T01:three_prime_UTR
GAGCCGGCATCTCGGTTTGT+AGG 0.338051 1:+4754488 None:intergenic
GTTTGAACAGGTTATAGTTC+TGG 0.342225 1:-4756635 MsG0180000350.01.T01:intron
AGTTTGTGCAATGATCTTCT+AGG 0.349835 1:-4753864 MsG0180000350.01.T01:CDS
TGGAGTGAGTTTAGAAGGTT+TGG 0.355173 1:-4757687 MsG0180000350.01.T01:CDS
TCCTCGAGGAACAATGAATT+CGG 0.355251 1:-4754599 MsG0180000350.01.T01:CDS
ACACCTAACCCCATTTGAAT+AGG 0.359219 1:+4754236 None:intergenic
AACTCACACTTTCACCTCTT+AGG 0.372743 1:-4754277 MsG0180000350.01.T01:CDS
CTAATTGGATTCCAATAACT+TGG 0.378217 1:-4754154 MsG0180000350.01.T01:CDS
TTGATTGATGCAGTGGGATG+GGG 0.381772 1:-4755708 MsG0180000350.01.T01:intron
TTGGTGATCTGAGTGAGTTT+TGG 0.385367 1:+4754430 None:intergenic
GTGAAGATGAACCGAAGGTT+CGG 0.390750 1:+4754516 None:intergenic
ATGTTTCATGTGATGTTTGT+TGG 0.392993 1:-4753565 MsG0180000350.01.T01:three_prime_UTR
CAACATGATTTGGATATGTT+AGG 0.394707 1:-4753616 MsG0180000350.01.T01:three_prime_UTR
GAAATAGACCCTATTCAAAT+GGG 0.406443 1:-4754245 MsG0180000350.01.T01:CDS
AGAAATAGACCCTATTCAAA+TGG 0.409611 1:-4754246 MsG0180000350.01.T01:CDS
ACCATCAGTCATGAGATTTA+GGG 0.418748 1:+4754025 None:intergenic
TTCCTTTGGTTTCAACTCTA+GGG 0.420432 1:+4754667 None:intergenic
TAACTGTACATACATGCATT+TGG 0.424628 1:+4756440 None:intergenic
TGAAGATGAACCGAAGGTTC+GGG 0.426118 1:+4754517 None:intergenic
TGTTTCATGTGATGTTTGTT+GGG 0.426448 1:-4753564 MsG0180000350.01.T01:three_prime_UTR
TTTGATTGATGCAGTGGGAT+GGG 0.426520 1:-4755709 MsG0180000350.01.T01:intron
AACAACACCGATCCGGAACC+AGG 0.428029 1:-4755663 MsG0180000350.01.T01:CDS
TTGCTGGGAACCCGAACCTT+CGG 0.432840 1:-4754527 MsG0180000350.01.T01:CDS
AATAACTTGGGAGAGTTCAA+TGG 0.434636 1:-4754141 MsG0180000350.01.T01:CDS
ATTTGGATATGTTAGGCAAA+TGG 0.438818 1:-4753609 MsG0180000350.01.T01:three_prime_UTR
CACCTAACCCCATTTGAATA+GGG 0.440538 1:+4754237 None:intergenic
CCTCGAGGAACAATGAATTC+GGG 0.441663 1:-4754598 MsG0180000350.01.T01:CDS
AAATCTCATGACTGATGGTT+GGG 0.448530 1:-4754021 MsG0180000350.01.T01:CDS
ATGGATGGAGTTGGAACATC+AGG 0.449683 1:-4756579 MsG0180000350.01.T01:CDS
AATGCAAATGATGATCACTA+TGG 0.452218 1:-4754071 MsG0180000350.01.T01:CDS
TTACTTAAACAAGAGAGATC+TGG 0.453042 1:-4757611 MsG0180000350.01.T01:CDS
TTCTGCCCTTGGACTACTAC+CGG 0.453252 1:+4753914 None:intergenic
GTCCTTCAAAAGACTGCATT+CGG 0.456928 1:-4753957 MsG0180000350.01.T01:CDS
GGTGGCAGCATTGGTAGTGC+AGG 0.459850 1:+4754692 None:intergenic
AGAAAAGCCCTTGATTCTGC+TGG 0.462621 1:-4756494 MsG0180000350.01.T01:CDS
CTGCTGCCAACACCATCAAC+AGG 0.462743 1:-4755299 MsG0180000350.01.T01:intron
GATGTTTGTTGGGAGTGATT+TGG 0.465064 1:-4753554 MsG0180000350.01.T01:three_prime_UTR
CAGAAAACCTCCACTTTGCT+GGG 0.465527 1:-4754542 MsG0180000350.01.T01:CDS
TTTGGTTTCAACTCTAGGGT+GGG 0.469835 1:+4754671 None:intergenic
TTCTGACCTGTTGATGGTGT+TGG 0.470559 1:+4755293 None:intergenic
ATTTCTCTTGATAGCCTAAG+AGG 0.472531 1:+4754263 None:intergenic
CCGGTTGGCGATGATCCAAT+TGG 0.472751 1:+4753981 None:intergenic
TGGTACAACAACAATGGATC+TGG 0.476248 1:-4757635 MsG0180000350.01.T01:CDS
TCTAGGGTGGGTGGCAGCAT+TGG 0.476278 1:+4754683 None:intergenic
GGGATGGGGAGGATTCCATC+TGG 0.478367 1:-4755694 MsG0180000350.01.T01:CDS
CTTGTTCCTCTAAGGAGTAA+AGG 0.479994 1:+4753818 None:intergenic
TGTTTCTAAATGGATCTTGG+TGG 0.483588 1:-4757707 None:intergenic
AGCCGGCATCTCGGTTTGTA+GGG 0.485238 1:+4754489 None:intergenic
CTTTGGTTTCAACTCTAGGG+TGG 0.485260 1:+4754670 None:intergenic
TAGATAAGCCAGCAGAATCA+AGG 0.485816 1:+4756486 None:intergenic
ATTCAAATGGGGTTAGGTGT+TGG 0.489350 1:-4754233 MsG0180000350.01.T01:CDS
AGTTCAATGGGTGGTCCACT+TGG 0.489957 1:-4754128 MsG0180000350.01.T01:CDS
AACAGTAAAGTGATGTTGGT+TGG 0.490751 1:-4753502 None:intergenic
AATCACAATAGTCCTCCAAT+TGG 0.497889 1:-4753996 MsG0180000350.01.T01:CDS
CCAATTGGATCATCGCCAAC+CGG 0.498011 1:-4753981 MsG0180000350.01.T01:CDS
AGCTCGACATGCAGTCTGAT+AGG 0.498577 1:-4754373 MsG0180000350.01.T01:CDS
GACCATTCACACCTTCTCAA+TGG 0.498886 1:-4756598 MsG0180000350.01.T01:CDS
GACCCTATTCAAATGGGGTT+AGG 0.500567 1:-4754239 MsG0180000350.01.T01:CDS
TTCAACACCGATGACTTCCT+CGG 0.501884 1:-4754336 MsG0180000350.01.T01:CDS
AACCCTACAAACCGAGATGC+CGG 0.507851 1:-4754491 MsG0180000350.01.T01:CDS
TGAAGGGTTCAGAAGGGAAT+CGG 0.508397 1:+4754565 None:intergenic
CCGGCTCTCAGCAATCCCTT+AGG 0.514380 1:-4754472 MsG0180000350.01.T01:CDS
GATATGTTAGGCAAATGGTT+TGG 0.516188 1:-4753604 MsG0180000350.01.T01:three_prime_UTR
AACAATAAAACAACTCAAGA+AGG 0.516329 1:-4753891 MsG0180000350.01.T01:CDS
ATTGATGCAGTGGGATGGGG+AGG 0.517801 1:-4755705 MsG0180000350.01.T01:intron
ATACTCGAACAACACCGATC+CGG 0.522042 1:-4755670 MsG0180000350.01.T01:CDS
TATCCAAATCATGTTGGCAT+TGG 0.526730 1:+4753623 None:intergenic
AGTCGTCGATAAAATGCCTA+AGG 0.528289 1:+4754456 None:intergenic
ATCCATTGAGAAGGTGTGAA+TGG 0.529637 1:+4756596 None:intergenic
ATAACTTGGGAGAGTTCAAT+GGG 0.532863 1:-4754140 MsG0180000350.01.T01:CDS
TATAGTTCTGGAAGCATGCA+TGG 0.536987 1:-4756623 MsG0180000350.01.T01:CDS
TAAATCTCATGACTGATGGT+TGG 0.537129 1:-4754022 MsG0180000350.01.T01:CDS
GGAGAACAGATGGAAAGAAA+TGG 0.537455 1:-4755632 MsG0180000350.01.T01:CDS
ACACCTTCCTGGTTCCGGAT+CGG 0.539895 1:+4755656 None:intergenic
CGCAGTACTTTGATCAACAA+CGG 0.542708 1:+4755593 None:intergenic
CCTAAGGGATTGCTGAGAGC+CGG 0.542797 1:+4754472 None:intergenic
AAATCATGTTGGCATTGGTA+TGG 0.546597 1:+4753628 None:intergenic
AATGGGTGGTCCACTTGGAG+AGG 0.548361 1:-4754123 MsG0180000350.01.T01:CDS
CACCAACATCATAACCGCTC+AGG 0.548639 1:-4754413 MsG0180000350.01.T01:CDS
ATTCACACCTTCTCAATGGA+TGG 0.550208 1:-4756594 MsG0180000350.01.T01:CDS
GGTTTCAACTCTAGGGTGGG+TGG 0.557674 1:+4754674 None:intergenic
ATTGCTGAGAGCCGGCATCT+CGG 0.560473 1:+4754480 None:intergenic
ACCTTCTCAATGGATGGAGT+TGG 0.562452 1:-4756588 MsG0180000350.01.T01:CDS
TCAGACTGCATGTCGAGCTC+CGG 0.562970 1:+4754377 None:intergenic
AGATAAGCCAGCAGAATCAA+GGG 0.564902 1:+4756487 None:intergenic
GATCTTCTAGGATCAACTCT+TGG 0.567836 1:-4753852 MsG0180000350.01.T01:CDS
ATGAAGTCCGAGGAAGTCAT+CGG 0.569735 1:+4754329 None:intergenic
GCCCTAAATCTCATGACTGA+TGG 0.570545 1:-4754026 MsG0180000350.01.T01:CDS
GGAAGGTGTAGGAGAACAGA+TGG 0.576607 1:-4755642 MsG0180000350.01.T01:CDS
CAACACTAGTGAGAGGATGC+AGG 0.577864 1:-4754720 MsG0180000350.01.T01:CDS
AATAAATGGTACAACAACAA+TGG 0.583357 1:-4757641 MsG0180000350.01.T01:CDS
GGATGGGGAGGATTCCATCT+GGG 0.587603 1:-4755693 MsG0180000350.01.T01:CDS
AATGATGATCACTATGGCAG+AGG 0.596008 1:-4754065 MsG0180000350.01.T01:CDS
TAATTGGATTCCAATAACTT+GGG 0.596671 1:-4754153 MsG0180000350.01.T01:CDS
GTTGGCGATGATCCAATTGG+AGG 0.597813 1:+4753984 None:intergenic
TCGGGTTCCCAGCAAAGTGG+AGG 0.601917 1:+4754535 None:intergenic
ACATACATGCATTTGGTCTG+AGG 0.604587 1:+4756447 None:intergenic
TAGCGCCGGTAGTAGTCCAA+GGG 0.611402 1:-4753919 MsG0180000350.01.T01:CDS
GTAGCGCCGGTAGTAGTCCA+AGG 0.615873 1:-4753920 MsG0180000350.01.T01:CDS
CACCTGAGCGGTTATGATGT+TGG 0.615910 1:+4754411 None:intergenic
CTAACATATCCAAATCATGT+TGG 0.620967 1:+4753617 None:intergenic
TCCAACTCCATCCATTGAGA+AGG 0.621452 1:+4756587 None:intergenic
CAACATCATAACCGCTCAGG+TGG 0.625010 1:-4754410 MsG0180000350.01.T01:CDS
GTCGTCGATAAAATGCCTAA+GGG 0.628833 1:+4754457 None:intergenic
TCACTTTCGAATAGTAGCGC+CGG 0.636444 1:-4753933 MsG0180000350.01.T01:CDS
CACCCTAGAGTTGAAACCAA+AGG 0.638527 1:-4754669 MsG0180000350.01.T01:CDS
GGTTCGGGTTCCCAGCAAAG+TGG 0.643195 1:+4754532 None:intergenic
TTTCTGTGAAGGGTTCAGAA+GGG 0.643231 1:+4754559 None:intergenic
CCCGAATTCATTGTTCCTCG+AGG 0.649213 1:+4754598 None:intergenic
AGATGAAGAACCTCTCCAAG+TGG 0.649574 1:+4754113 None:intergenic
ATCCGGAACCAGGAAGGTGT+AGG 0.650872 1:-4755653 MsG0180000350.01.T01:CDS
ATAGGTAAAAGCAAATGATG+AGG 0.652672 1:+4756518 None:intergenic
AGAATAACAACACTAGTGAG+AGG 0.653602 1:-4754727 MsG0180000350.01.T01:CDS
ACACCGATCCGGAACCAGGA+AGG 0.656785 1:-4755659 MsG0180000350.01.T01:CDS
TGTTGTTCGAGTATCCCAGA+TGG 0.657354 1:+4755679 None:intergenic
ATCAGTCATGAGATTTAGGG+CGG 0.658516 1:+4754028 None:intergenic
ACTAGTGAGAGGATGCAGGA+TGG 0.682389 1:-4754716 MsG0180000350.01.T01:CDS
AAATAGACCCTATTCAAATG+GGG 0.682714 1:-4754244 MsG0180000350.01.T01:CDS
CGTGAACGACATGAAGTCCG+AGG 0.693679 1:+4754319 None:intergenic
ACTTGGGAGAGTTCAATGGG+TGG 0.696784 1:-4754137 MsG0180000350.01.T01:CDS
TTTCATATGATGAGTCCTCG+AGG 0.724605 1:-4754613 MsG0180000350.01.T01:CDS
AGTTCTGGAAGCATGCATGG+AGG 0.751541 1:-4756620 MsG0180000350.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAAATTTATATATTT+TGG - Chr1:4753908-4753927 MsG0180000350.01.T01:CDS 0.0%
!!! AAATTTATATATTTTGGATT+TGG - Chr1:4753914-4753933 MsG0180000350.01.T01:CDS 10.0%
!!! TTTTTATTTATTTTCATGTA+AGG + Chr1:4754343-4754362 None:intergenic 10.0%
!! ATAATGTTGTTATAGTTATA+AGG - Chr1:4753995-4754014 MsG0180000350.01.T01:CDS 15.0%
!! ATGATATTACATTACATATA+TGG - Chr1:4757502-4757521 MsG0180000350.01.T01:CDS 15.0%
!! TATCTTTGTTAGTATTAATT+AGG + Chr1:4754803-4754822 None:intergenic 15.0%
!! TATGTATTTATGAATCTATA+TGG - Chr1:4753946-4753965 MsG0180000350.01.T01:CDS 15.0%
!! TTGCATTATATTAGAAAATA+AGG - Chr1:4755154-4755173 MsG0180000350.01.T01:intron 15.0%
!!! AGTTATTTTTAACAAAATCA+AGG + Chr1:4755969-4755988 None:intergenic 15.0%
!!! ATTATTTTTTTCCAATCATT+TGG - Chr1:4754912-4754931 MsG0180000350.01.T01:intron 15.0%
!!! ATTTTCTAATATAATGCAAA+GGG + Chr1:4755153-4755172 None:intergenic 15.0%
!!! TATTTTCTAATATAATGCAA+AGG + Chr1:4755154-4755173 None:intergenic 15.0%
!!! TTGTAATTTTGGTTAATTTA+AGG - Chr1:4755101-4755120 MsG0180000350.01.T01:intron 15.0%
!! ATTTATGAGCTATAATATGT+AGG - Chr1:4754235-4754254 MsG0180000350.01.T01:CDS 20.0%
!! CTAACAAAGATAAACATTAT+TGG - Chr1:4754811-4754830 MsG0180000350.01.T01:intron 20.0%
!! TATAGTACTAATCAATATGT+AGG - Chr1:4756010-4756029 MsG0180000350.01.T01:intron 20.0%
!! TTGAAAAAAAAATTGATCGT+TGG - Chr1:4755281-4755300 MsG0180000350.01.T01:intron 20.0%
!!! AAAAGCTACAAAATTTTGAT+TGG - Chr1:4754262-4754281 MsG0180000350.01.T01:CDS 20.0%
!!! AATTGTTACTTTTGTGTATA+AGG - Chr1:4756365-4756384 MsG0180000350.01.T01:intron 20.0%
!!! ATCAACTTTTTTTTGTGTTT+TGG - Chr1:4754482-4754501 MsG0180000350.01.T01:CDS 20.0%
!!! ATTGTTACTTTTGTGTATAA+GGG - Chr1:4756366-4756385 MsG0180000350.01.T01:intron 20.0%
!!! GGTACAACATTTTTTTTTTT+AGG - Chr1:4753858-4753877 MsG0180000350.01.T01:CDS 20.0%
!!! TACATATTGATTAGTACTAT+AGG + Chr1:4756011-4756030 None:intergenic 20.0%
!!! TATTTATTTTCATGTAAGGA+GGG + Chr1:4754339-4754358 None:intergenic 20.0%
!!! TTATTTATTTTCATGTAAGG+AGG + Chr1:4754340-4754359 None:intergenic 20.0%
! AAAAAACAGTAAAGTGATGT+TGG - Chr1:4757695-4757714 MsG0180000350.01.T01:CDS 25.0%
! AACAATAAAACAACTCAAGA+AGG - Chr1:4757310-4757329 MsG0180000350.01.T01:intron 25.0%
! AAGAATATGAACAACCTTAT+TGG - Chr1:4755862-4755881 MsG0180000350.01.T01:intron 25.0%
! AATAAATGGTACAACAACAA+TGG - Chr1:4753560-4753579 MsG0180000350.01.T01:three_prime_UTR 25.0%
! AATAAGGTTGTTCATATTCT+TGG + Chr1:4755863-4755882 None:intergenic 25.0%
! AATCTATATGGTATCCATTT+GGG - Chr1:4753958-4753977 MsG0180000350.01.T01:CDS 25.0%
! AATCTCACACATTCAATTTA+AGG + Chr1:4754939-4754958 None:intergenic 25.0%
! AATGTACCAAAATTGCAAAA+AGG - Chr1:4754975-4754994 MsG0180000350.01.T01:intron 25.0%
! ATCCTGAGTCAAAAAATAAA+TGG - Chr1:4753546-4753565 MsG0180000350.01.T01:three_prime_UTR 25.0%
! ATGTACCAAAATTGCAAAAA+GGG - Chr1:4754976-4754995 MsG0180000350.01.T01:intron 25.0%
! ATTAATTAGGCAAGGAAAAA+GGG + Chr1:4754790-4754809 None:intergenic 25.0%
! CAAATCAAATTTGTGTTTGA+AGG - Chr1:4755178-4755197 MsG0180000350.01.T01:intron 25.0%
! CTTCAAACACAAATTTGATT+TGG + Chr1:4755180-4755199 None:intergenic 25.0%
! TAATTGGATTCCAATAACTT+GGG - Chr1:4757048-4757067 MsG0180000350.01.T01:intron 25.0%
! TAGAGAATCACAATCAATTA+CGG + Chr1:4756188-4756207 None:intergenic 25.0%
! TAGTTGAAAACTAACAATCA+AGG + Chr1:4755398-4755417 None:intergenic 25.0%
! TATTAATTAGGCAAGGAAAA+AGG + Chr1:4754791-4754810 None:intergenic 25.0%
! TTAAGTCATGTCAAGAAAAA+AGG - Chr1:4754082-4754101 MsG0180000350.01.T01:CDS 25.0%
! TTGTTAGTATTAATTAGGCA+AGG + Chr1:4754798-4754817 None:intergenic 25.0%
!! AAAAGATTCAGATTTGAAGT+AGG + Chr1:4753758-4753777 None:intergenic 25.0%
!! TGTATTTTATGTCTCTATGA+CGG - Chr1:4756144-4756163 MsG0180000350.01.T01:intron 25.0%
!!! ACAGATTTTTTAGAGAAAGA+TGG + Chr1:4754300-4754319 None:intergenic 25.0%
!!! ATGAAAGATTGATTTTCCTT+TGG + Chr1:4756551-4756570 None:intergenic 25.0%
!!! CAAGGATGTTTTTGTAATTT+TGG - Chr1:4755090-4755109 MsG0180000350.01.T01:intron 25.0%
!!! CATGGAAATATATTTTTGAG+TGG - Chr1:4754049-4754068 MsG0180000350.01.T01:CDS 25.0%
!!! TACCATTTATTTTTTGACTC+AGG + Chr1:4753551-4753570 None:intergenic 25.0%
!!! TTGCAATTTTGGTACATTTA+GGG + Chr1:4754973-4754992 None:intergenic 25.0%
!!! TTTGCAATTTTGGTACATTT+AGG + Chr1:4754974-4754993 None:intergenic 25.0%
!!! TTTTTTTGTTTCTTGTTTGC+AGG - Chr1:4756432-4756451 MsG0180000350.01.T01:intron 25.0%
AAATAGACCCTATTCAAATG+GGG - Chr1:4756957-4756976 MsG0180000350.01.T01:intron 30.0%
AAATTCTAATCACATTCCGT+TGG + Chr1:4756306-4756325 None:intergenic 30.0%
AACATTAAACATGTCATGTG+AGG - Chr1:4755448-4755467 MsG0180000350.01.T01:intron 30.0%
AAGCATTATCTTGTCCAATA+AGG + Chr1:4755879-4755898 None:intergenic 30.0%
AATGCAAATGATGATCACTA+TGG - Chr1:4757130-4757149 MsG0180000350.01.T01:intron 30.0%
ACAGTATTCAACAAACATCA+AGG + Chr1:4754548-4754567 None:intergenic 30.0%
ACATAAAATACATGATGCCA+CGG + Chr1:4756136-4756155 None:intergenic 30.0%
AGAAATAGACCCTATTCAAA+TGG - Chr1:4756955-4756974 MsG0180000350.01.T01:intron 30.0%
ATACTACAAAGCAAGCTAAT+TGG - Chr1:4757032-4757051 MsG0180000350.01.T01:intron 30.0%
ATAGGTAAAAGCAAATGATG+AGG + Chr1:4754686-4754705 None:intergenic 30.0%
ATCTATATGGTATCCATTTG+GGG - Chr1:4753959-4753978 MsG0180000350.01.T01:CDS 30.0%
ATGTTTCATGTGATGTTTGT+TGG - Chr1:4757636-4757655 MsG0180000350.01.T01:CDS 30.0%
ATTTGGATATGTTAGGCAAA+TGG - Chr1:4757592-4757611 MsG0180000350.01.T01:CDS 30.0%
CAATTTAAGGACCAAATGAT+TGG + Chr1:4754926-4754945 None:intergenic 30.0%
CATCAAGGTAAAGTCAAAAA+AGG + Chr1:4754533-4754552 None:intergenic 30.0%
CTAACATATCCAAATCATGT+TGG + Chr1:4757587-4757606 None:intergenic 30.0%
CTAATTGGATTCCAATAACT+TGG - Chr1:4757047-4757066 MsG0180000350.01.T01:intron 30.0%
GAAATAGACCCTATTCAAAT+GGG - Chr1:4756956-4756975 MsG0180000350.01.T01:intron 30.0%
GAATCATTCAAAAGTCAATG+TGG - Chr1:4755233-4755252 MsG0180000350.01.T01:intron 30.0%
GAATCTATATGGTATCCATT+TGG - Chr1:4753957-4753976 MsG0180000350.01.T01:CDS 30.0%
GTTGTAAATCAGTTTAGTCT+TGG + Chr1:4755053-4755072 None:intergenic 30.0%
TAACTGTACATACATGCATT+TGG + Chr1:4754764-4754783 None:intergenic 30.0%
TATTGCAAGAAATGTACCAA+CGG - Chr1:4756287-4756306 MsG0180000350.01.T01:intron 30.0%
TCTAGTTACAACAGAAATAC+AGG - Chr1:4753837-4753856 MsG0180000350.01.T01:CDS 30.0%
TGTACCAAAATTGCAAAAAG+GGG - Chr1:4754977-4754996 MsG0180000350.01.T01:intron 30.0%
TGTCAAGAAAAAAGGAACAT+AGG - Chr1:4754090-4754109 MsG0180000350.01.T01:CDS 30.0%
TGTGTATAAGGGATAAATTC+AGG - Chr1:4756377-4756396 MsG0180000350.01.T01:intron 30.0%
TGTTTCATGTGATGTTTGTT+GGG - Chr1:4757637-4757656 MsG0180000350.01.T01:CDS 30.0%
TGTTTCTTATAGTTTAGTGC+AGG + Chr1:4755026-4755045 None:intergenic 30.0%
TTACTTAAACAAGAGAGATC+TGG - Chr1:4753590-4753609 MsG0180000350.01.T01:three_prime_UTR 30.0%
TTCATATTCTTGGAATTTCC+TGG + Chr1:4755853-4755872 None:intergenic 30.0%
TTGTTGAATACTGTTTGAAC+AGG - Chr1:4754554-4754573 MsG0180000350.01.T01:CDS 30.0%
TTTCTGTTGTAACTAGACAT+AGG + Chr1:4753834-4753853 None:intergenic 30.0%
! AAGAGCACACAACAAAAAAA+AGG + Chr1:4754445-4754464 None:intergenic 30.0%
! ATAAGACAATGCAGCATTTT+GGG + Chr1:4753796-4753815 None:intergenic 30.0%
! ATTTTTGCACAGTATACTAG+AGG - Chr1:4754196-4754215 MsG0180000350.01.T01:CDS 30.0%
! CAACATGATTTGGATATGTT+AGG - Chr1:4757585-4757604 MsG0180000350.01.T01:CDS 30.0%
! CTTATCTTCTTCCTGTTTTA+GGG - Chr1:4754157-4754176 MsG0180000350.01.T01:CDS 30.0%
! TCTTATCTTCTTCCTGTTTT+AGG - Chr1:4754156-4754175 MsG0180000350.01.T01:CDS 30.0%
! TGTTGCTGTTGAATGAATAA+CGG + Chr1:4756252-4756271 None:intergenic 30.0%
! TTTTTGCACAGTATACTAGA+GGG - Chr1:4754197-4754216 MsG0180000350.01.T01:CDS 30.0%
!! ATGTTTTTGATTGATGCAGT+GGG - Chr1:4755487-4755506 MsG0180000350.01.T01:intron 30.0%
!! TATGTTTTTGATTGATGCAG+TGG - Chr1:4755486-4755505 MsG0180000350.01.T01:intron 30.0%
!! TGAAAGTGTGAGTTTTTCAT+TGG + Chr1:4756918-4756937 None:intergenic 30.0%
!!! AAATTTTTTAGCTCCCCAAA+TGG + Chr1:4753975-4753994 None:intergenic 30.0%
!!! ACTACACTTTTTTCTTCTGA+TGG - Chr1:4753704-4753723 MsG0180000350.01.T01:three_prime_UTR 30.0%
AAATCTCATGACTGATGGTT+GGG - Chr1:4757180-4757199 MsG0180000350.01.T01:intron 35.0%
AAATTGCAAAAAGGGGCTAA+TGG - Chr1:4754984-4755003 MsG0180000350.01.T01:intron 35.0%
AACCATCAGTCATGAGATTT+AGG + Chr1:4757180-4757199 None:intergenic 35.0%
AATAACTTGGGAGAGTTCAA+TGG - Chr1:4757060-4757079 MsG0180000350.01.T01:intron 35.0%
AATCACAATAGTCCTCCAAT+TGG - Chr1:4757205-4757224 MsG0180000350.01.T01:intron 35.0%
ACCATCAGTCATGAGATTTA+GGG + Chr1:4757179-4757198 None:intergenic 35.0%
AGAATAACAACACTAGTGAG+AGG - Chr1:4756474-4756493 MsG0180000350.01.T01:CDS 35.0%
AGTTTGTGCAATGATCTTCT+AGG - Chr1:4757337-4757356 MsG0180000350.01.T01:intron 35.0%
ATAACTTGGGAGAGTTCAAT+GGG - Chr1:4757061-4757080 MsG0180000350.01.T01:intron 35.0%
ATACCAATGCCAACATGATT+TGG - Chr1:4757575-4757594 MsG0180000350.01.T01:CDS 35.0%
ATATGTGAATTGTTACGCTG+TGG + Chr1:4755213-4755232 None:intergenic 35.0%
ATTAAACATGTCATGTGAGG+TGG - Chr1:4755451-4755470 MsG0180000350.01.T01:intron 35.0%
ATTGAACTCTCCCAAGTTAT+TGG + Chr1:4757061-4757080 None:intergenic 35.0%
CTTGACAAGAGATACATTCA+AGG - Chr1:4755072-4755091 MsG0180000350.01.T01:intron 35.0%
GATATGTTAGGCAAATGGTT+TGG - Chr1:4757597-4757616 MsG0180000350.01.T01:CDS 35.0%
GGAACAACAATAGATGAAGA+AGG + Chr1:4755791-4755810 None:intergenic 35.0%
GTATGATTCTACAGTACTGT+TGG - Chr1:4754017-4754036 MsG0180000350.01.T01:CDS 35.0%
GTGATCATCATTTGCATTGT+AGG + Chr1:4757128-4757147 None:intergenic 35.0%
GTTTGAACAGGTTATAGTTC+TGG - Chr1:4754566-4754585 MsG0180000350.01.T01:CDS 35.0%
TAAATCTCATGACTGATGGT+TGG - Chr1:4757179-4757198 MsG0180000350.01.T01:intron 35.0%
TAGTAGTAGTAGCTGTATTG+TGG + Chr1:4755712-4755731 None:intergenic 35.0%
TATCCAAATCATGTTGGCAT+TGG + Chr1:4757581-4757600 None:intergenic 35.0%
TGATGTCATCAACTCATCAT+TGG - Chr1:4755420-4755439 MsG0180000350.01.T01:intron 35.0%
TGTTGTAACTAGACATAGGA+TGG + Chr1:4753830-4753849 None:intergenic 35.0%
TTAAGGACTATAGTGATGCA+AGG - Chr1:4755118-4755137 MsG0180000350.01.T01:intron 35.0%
TTCTTCATCTTGTTCCTCTA+AGG + Chr1:4757394-4757413 None:intergenic 35.0%
! AAACAAATTAGAGTGTCACG+AGG - Chr1:4756080-4756099 MsG0180000350.01.T01:intron 35.0%
! AACAAATTAGAGTGTCACGA+GGG - Chr1:4756081-4756100 MsG0180000350.01.T01:intron 35.0%
! ATTTCTCTTGATAGCCTAAG+AGG + Chr1:4756941-4756960 None:intergenic 35.0%
! CATAAGACAATGCAGCATTT+TGG + Chr1:4753797-4753816 None:intergenic 35.0%
! TCTTCATCTATTGTTGTTCC+TGG - Chr1:4755791-4755810 MsG0180000350.01.T01:intron 35.0%
! TTAGCCCCTTTTTGCAATTT+TGG + Chr1:4754984-4755003 None:intergenic 35.0%
! TTCCTTTGGTTTCAACTCTA+GGG + Chr1:4756537-4756556 None:intergenic 35.0%
! TTTCCTTTGGTTTCAACTCT+AGG + Chr1:4756538-4756557 None:intergenic 35.0%
!! AAATCATGTTGGCATTGGTA+TGG + Chr1:4757576-4757595 None:intergenic 35.0%
!! GTTTTATTGTTTTCTGCCCT+TGG + Chr1:4757301-4757320 None:intergenic 35.0%
!! TGTGAGTTTTTCATTGGTTG+CGG + Chr1:4756912-4756931 None:intergenic 35.0%
AAAACCCATCTCCCTAAAAC+AGG + Chr1:4754171-4754190 None:intergenic 40.0%
AACTCACACTTTCACCTCTT+AGG - Chr1:4756924-4756943 MsG0180000350.01.T01:intron 40.0%
AATGATGATCACTATGGCAG+AGG - Chr1:4757136-4757155 MsG0180000350.01.T01:intron 40.0%
ACACCTAACCCCATTTGAAT+AGG + Chr1:4756968-4756987 None:intergenic 40.0%
ACATACATGCATTTGGTCTG+AGG + Chr1:4754757-4754776 None:intergenic 40.0%
ACTTCAACCATTACTCCAAG+TGG - Chr1:4755731-4755750 MsG0180000350.01.T01:intron 40.0%
AGAATTGTGACTGAACATCG+TGG - Chr1:4756216-4756235 MsG0180000350.01.T01:intron 40.0%
AGATAAGCCAGCAGAATCAA+GGG + Chr1:4754717-4754736 None:intergenic 40.0%
AGTCGTCGATAAAATGCCTA+AGG + Chr1:4756748-4756767 None:intergenic 40.0%
ATCAGTCATGAGATTTAGGG+CGG + Chr1:4757176-4757195 None:intergenic 40.0%
ATCTGCTTTGATGAACCACT+TGG + Chr1:4755749-4755768 None:intergenic 40.0%
ATGCTTCCTTTACTCCTTAG+AGG - Chr1:4757377-4757396 MsG0180000350.01.T01:intron 40.0%
ATTCAAATGGGGTTAGGTGT+TGG - Chr1:4756968-4756987 MsG0180000350.01.T01:intron 40.0%
ATTCACACCTTCTCAATGGA+TGG - Chr1:4754607-4754626 MsG0180000350.01.T01:CDS 40.0%
CACCTAACCCCATTTGAATA+GGG + Chr1:4756967-4756986 None:intergenic 40.0%
CGCAGTACTTTGATCAACAA+CGG + Chr1:4755611-4755630 None:intergenic 40.0%
GATTCTACAGTACTGTTGGA+GGG - Chr1:4754021-4754040 MsG0180000350.01.T01:CDS 40.0%
GGAGAACAGATGGAAAGAAA+TGG - Chr1:4755569-4755588 MsG0180000350.01.T01:intron 40.0%
GGTTGAAAACATGTCATGTG+AGG - Chr1:4755302-4755321 MsG0180000350.01.T01:CDS 40.0%
GTCCTTCAAAAGACTGCATT+CGG - Chr1:4757244-4757263 MsG0180000350.01.T01:intron 40.0%
GTCGTCGATAAAATGCCTAA+GGG + Chr1:4756747-4756766 None:intergenic 40.0%
TAGATAAGCCAGCAGAATCA+AGG + Chr1:4754718-4754737 None:intergenic 40.0%
TCCTCGAGGAACAATGAATT+CGG - Chr1:4756602-4756621 MsG0180000350.01.T01:CDS 40.0%
TGAAAACATGTCATGTGAGG+TGG - Chr1:4755305-4755324 MsG0180000350.01.T01:CDS 40.0%
TGATGAACCACTTGGAGTAA+TGG + Chr1:4755741-4755760 None:intergenic 40.0%
TGATTCTACAGTACTGTTGG+AGG - Chr1:4754020-4754039 MsG0180000350.01.T01:CDS 40.0%
TGGAGTGAGTTTAGAAGGTT+TGG - Chr1:4753514-4753533 MsG0180000350.01.T01:three_prime_UTR 40.0%
TGGTACAACAACAATGGATC+TGG - Chr1:4753566-4753585 MsG0180000350.01.T01:three_prime_UTR 40.0%
TGTGAGGTGGAGTAGTAATA+TGG - Chr1:4755318-4755337 MsG0180000350.01.T01:CDS 40.0%
TTTCATATGATGAGTCCTCG+AGG - Chr1:4756588-4756607 MsG0180000350.01.T01:CDS 40.0%
TTTCTGTGAAGGGTTCAGAA+GGG + Chr1:4756645-4756664 None:intergenic 40.0%
TTTGATTGATGCAGTGGGAT+GGG - Chr1:4755492-4755511 MsG0180000350.01.T01:intron 40.0%
! AAAGTGGAGGTTTTCTGTGA+AGG + Chr1:4756656-4756675 None:intergenic 40.0%
! AAGTGGAGGTTTTCTGTGAA+GGG + Chr1:4756655-4756674 None:intergenic 40.0%
! ATCCATTGAGAAGGTGTGAA+TGG + Chr1:4754608-4754627 None:intergenic 40.0%
! ATCCGAATGCAGTCTTTTGA+AGG + Chr1:4757249-4757268 None:intergenic 40.0%
! ATGTAAGGAGGGTGTAGAAA+AGG + Chr1:4754328-4754347 None:intergenic 40.0%
! CTTGTTCCTCTAAGGAGTAA+AGG + Chr1:4757386-4757405 None:intergenic 40.0%
! GAATCAAGGGCTTTTCTGAT+AGG + Chr1:4754704-4754723 None:intergenic 40.0%
! GATGTTTGTTGGGAGTGATT+TGG - Chr1:4757647-4757666 MsG0180000350.01.T01:CDS 40.0%
! GTTTTGTGAAGATGAACCGA+AGG + Chr1:4756693-4756712 None:intergenic 40.0%
! TCATCTATTGTTGTTCCTGG+TGG - Chr1:4755794-4755813 MsG0180000350.01.T01:intron 40.0%
! TGGTGATCTGAGTGAGTTTT+GGG + Chr1:4756773-4756792 None:intergenic 40.0%
! TTTTCTGTGAAGGGTTCAGA+AGG + Chr1:4756646-4756665 None:intergenic 40.0%
!! CTAGTTTTCTGACCTGTTGA+TGG + Chr1:4755917-4755936 None:intergenic 40.0%
!! GATCTTCTAGGATCAACTCT+TGG - Chr1:4757349-4757368 MsG0180000350.01.T01:intron 40.0%
!! GTTGATCAAAGTACTGCGAA+AGG - Chr1:4755613-4755632 MsG0180000350.01.T01:CDS 40.0%
!! TATAGTTCTGGAAGCATGCA+TGG - Chr1:4754578-4754597 MsG0180000350.01.T01:CDS 40.0%
!! TTGGTGATCTGAGTGAGTTT+TGG + Chr1:4756774-4756793 None:intergenic 40.0%
!! TTTGGTTTCAACTCTAGGGT+GGG + Chr1:4756533-4756552 None:intergenic 40.0%
!! TTTTGATTGATGCAGTGGGA+TGG - Chr1:4755491-4755510 MsG0180000350.01.T01:intron 40.0%
!!! TCTTCCTGTTTTAGGGAGAT+GGG - Chr1:4754164-4754183 MsG0180000350.01.T01:CDS 40.0%
!!! TTCTTCCTGTTTTAGGGAGA+TGG - Chr1:4754163-4754182 MsG0180000350.01.T01:CDS 40.0%
AAACATGTCATGTGAGGTGG+TGG - Chr1:4755308-4755327 MsG0180000350.01.T01:CDS 45.0%
ACAGAAAACCTCCACTTTGC+TGG - Chr1:4756658-4756677 MsG0180000350.01.T01:intron 45.0%
ACCTTCTCAATGGATGGAGT+TGG - Chr1:4754613-4754632 MsG0180000350.01.T01:CDS 45.0%
AGAAAAGCCCTTGATTCTGC+TGG - Chr1:4754707-4754726 MsG0180000350.01.T01:CDS 45.0%
AGATGAAGAACCTCTCCAAG+TGG + Chr1:4757091-4757110 None:intergenic 45.0%
ATACTCGAACAACACCGATC+CGG - Chr1:4755531-4755550 MsG0180000350.01.T01:intron 45.0%
ATGAAGTCCGAGGAAGTCAT+CGG + Chr1:4756875-4756894 None:intergenic 45.0%
ATGGATGGAGTTGGAACATC+AGG - Chr1:4754622-4754641 MsG0180000350.01.T01:CDS 45.0%
CACCCTAGAGTTGAAACCAA+AGG - Chr1:4756532-4756551 MsG0180000350.01.T01:CDS 45.0%
CAGAAAACCTCCACTTTGCT+GGG - Chr1:4756659-4756678 MsG0180000350.01.T01:intron 45.0%
CCTCGAGGAACAATGAATTC+GGG - Chr1:4756603-4756622 MsG0180000350.01.T01:CDS 45.0%
CTTGGTGGAGTGAGTTTAGA+AGG - Chr1:4753509-4753528 MsG0180000350.01.T01:three_prime_UTR 45.0%
GACCATTCACACCTTCTCAA+TGG - Chr1:4754603-4754622 MsG0180000350.01.T01:CDS 45.0%
GACCCTATTCAAATGGGGTT+AGG - Chr1:4756962-4756981 MsG0180000350.01.T01:intron 45.0%
GCCCTAAATCTCATGACTGA+TGG - Chr1:4757175-4757194 MsG0180000350.01.T01:intron 45.0%
GTGAAGATGAACCGAAGGTT+CGG + Chr1:4756688-4756707 None:intergenic 45.0%
TACTGTTGGAGGGTCTTTCA+TGG - Chr1:4754031-4754050 MsG0180000350.01.T01:CDS 45.0%
TCACTTTCGAATAGTAGCGC+CGG - Chr1:4757268-4757287 MsG0180000350.01.T01:intron 45.0%
TCCAACTCCATCCATTGAGA+AGG + Chr1:4754617-4754636 None:intergenic 45.0%
TGAAGATGAACCGAAGGTTC+GGG + Chr1:4756687-4756706 None:intergenic 45.0%
TGAAGGGTTCAGAAGGGAAT+CGG + Chr1:4756639-4756658 None:intergenic 45.0%
TGTTGTTCGAGTATCCCAGA+TGG + Chr1:4755525-4755544 None:intergenic 45.0%
TTCAACACCGATGACTTCCT+CGG - Chr1:4756865-4756884 MsG0180000350.01.T01:intron 45.0%
TTGATTGATGCAGTGGGATG+GGG - Chr1:4755493-4755512 MsG0180000350.01.T01:intron 45.0%
TTGCAAAAAGGGGCTAATGG+AGG - Chr1:4754987-4755006 MsG0180000350.01.T01:intron 45.0%
! CTTTGGTTTCAACTCTAGGG+TGG + Chr1:4756534-4756553 None:intergenic 45.0%
! GTGTGCAAAGCTAAGAGTGT+TGG + Chr1:4755831-4755850 None:intergenic 45.0%
! TGCGAAAGGCATATGAACAG+AGG - Chr1:4755627-4755646 MsG0180000350.01.T01:CDS 45.0%
!! GAGTTTTTCATTGGTTGCGG+AGG + Chr1:4756909-4756928 None:intergenic 45.0%
!! TGCAGTCTTTTGAAGGACTC+CGG + Chr1:4757242-4757261 None:intergenic 45.0%
!! TTCTGACCTGTTGATGGTGT+TGG + Chr1:4755911-4755930 None:intergenic 45.0%
AACCCTACAAACCGAGATGC+CGG - Chr1:4756710-4756729 MsG0180000350.01.T01:intron 50.0%
ACTAGTGAGAGGATGCAGGA+TGG - Chr1:4756485-4756504 MsG0180000350.01.T01:CDS 50.0%
ACTTGGGAGAGTTCAATGGG+TGG - Chr1:4757064-4757083 MsG0180000350.01.T01:intron 50.0%
AGCTCGACATGCAGTCTGAT+AGG - Chr1:4756828-4756847 MsG0180000350.01.T01:intron 50.0%
AGTTCAATGGGTGGTCCACT+TGG - Chr1:4757073-4757092 MsG0180000350.01.T01:intron 50.0%
CAACACTAGTGAGAGGATGC+AGG - Chr1:4756481-4756500 MsG0180000350.01.T01:CDS 50.0%
CAACATCATAACCGCTCAGG+TGG - Chr1:4756791-4756810 MsG0180000350.01.T01:intron 50.0%
CACCAACATCATAACCGCTC+AGG - Chr1:4756788-4756807 MsG0180000350.01.T01:intron 50.0%
CACCTGAGCGGTTATGATGT+TGG + Chr1:4756793-4756812 None:intergenic 50.0%
CCAATTGGATCATCGCCAAC+CGG - Chr1:4757220-4757239 MsG0180000350.01.T01:intron 50.0%
CCCGAATTCATTGTTCCTCG+AGG + Chr1:4756606-4756625 None:intergenic 50.0%
CTGTATTGTGGTTCCACCAG+TGG + Chr1:4755700-4755719 None:intergenic 50.0%
GCCAAGAAAAACCACCTGAG+CGG + Chr1:4756805-4756824 None:intergenic 50.0%
GTTGGCGATGATCCAATTGG+AGG + Chr1:4757220-4757239 None:intergenic 50.0%
TCCACAGGCTTTCTGAACGA+TGG + Chr1:4755656-4755675 None:intergenic 50.0%
TCGTTCAGAAAGCCTGTGGA+AGG - Chr1:4755656-4755675 MsG0180000350.01.T01:CDS 50.0%
TCTGTTCTCCTACACCTTCC+TGG + Chr1:4755559-4755578 None:intergenic 50.0%
TGTCTCTATGACGGCTGTTG+AGG - Chr1:4756153-4756172 MsG0180000350.01.T01:intron 50.0%
TTCTGCCCTTGGACTACTAC+CGG + Chr1:4757290-4757309 None:intergenic 50.0%
TTGGAAACAGTGTTGCCACC+AGG + Chr1:4755812-4755831 None:intergenic 50.0%
! ACCGCTCAGGTGGTTTTTCT+TGG - Chr1:4756801-4756820 MsG0180000350.01.T01:intron 50.0%
! CTCAGGTGGTTTTTCTTGGC+CGG - Chr1:4756805-4756824 MsG0180000350.01.T01:intron 50.0%
! GGAAGGTGTAGGAGAACAGA+TGG - Chr1:4755559-4755578 MsG0180000350.01.T01:intron 50.0%
!! AGTTCTGGAAGCATGCATGG+AGG - Chr1:4754581-4754600 MsG0180000350.01.T01:CDS 50.0%
!! CACTCTTAGCTTTGCACACC+AGG - Chr1:4755832-4755851 MsG0180000350.01.T01:intron 50.0%
!! GTCTTTTGAAGGACTCCGGT+TGG + Chr1:4757238-4757257 None:intergenic 50.0%
AACAACACCGATCCGGAACC+AGG - Chr1:4755538-4755557 MsG0180000350.01.T01:intron 55.0%
AATGGGTGGTCCACTTGGAG+AGG - Chr1:4757078-4757097 MsG0180000350.01.T01:intron 55.0%
ACACCTTCCTGGTTCCGGAT+CGG + Chr1:4755548-4755567 None:intergenic 55.0%
ACGGCTCAGATCATAGTCGC+AGG + Chr1:4756117-4756136 None:intergenic 55.0%
ATTGATGCAGTGGGATGGGG+AGG - Chr1:4755496-4755515 MsG0180000350.01.T01:intron 55.0%
ATTGCTGAGAGCCGGCATCT+CGG + Chr1:4756724-4756743 None:intergenic 55.0%
CCGGTTGGCGATGATCCAAT+TGG + Chr1:4757223-4757242 None:intergenic 55.0%
CCTAAGGGATTGCTGAGAGC+CGG + Chr1:4756732-4756751 None:intergenic 55.0%
CGTGAACGACATGAAGTCCG+AGG + Chr1:4756885-4756904 None:intergenic 55.0%
CTCCTACACCTTCCTGGTTC+CGG + Chr1:4755553-4755572 None:intergenic 55.0%
CTGCTGCCAACACCATCAAC+AGG - Chr1:4755902-4755921 MsG0180000350.01.T01:intron 55.0%
GAAAGCCTGTGGAAGGCCAA+TGG - Chr1:4755663-4755682 MsG0180000350.01.T01:CDS 55.0%
GCCATCGTTCAGAAAGCCTG+TGG - Chr1:4755652-4755671 MsG0180000350.01.T01:CDS 55.0%
GGATGGGGAGGATTCCATCT+GGG - Chr1:4755508-4755527 MsG0180000350.01.T01:intron 55.0%
TCAGACTGCATGTCGAGCTC+CGG + Chr1:4756827-4756846 None:intergenic 55.0%
TGCGACTATGATCTGAGCCG+TGG - Chr1:4756116-4756135 MsG0180000350.01.T01:intron 55.0%
TTGCTGGGAACCCGAACCTT+CGG - Chr1:4756674-4756693 MsG0180000350.01.T01:intron 55.0%
! AGCCGGCATCTCGGTTTGTA+GGG + Chr1:4756715-4756734 None:intergenic 55.0%
! ATCCGGAACCAGGAAGGTGT+AGG - Chr1:4755548-4755567 MsG0180000350.01.T01:intron 55.0%
!! GGTTTCAACTCTAGGGTGGG+TGG + Chr1:4756530-4756549 None:intergenic 55.0%
!! TAGCGCCGGTAGTAGTCCAA+GGG - Chr1:4757282-4757301 MsG0180000350.01.T01:intron 55.0%
AATGGCCAGGCTCTCACCAC+TGG - Chr1:4755681-4755700 MsG0180000350.01.T01:CDS 60.0%
ACACCGATCCGGAACCAGGA+AGG - Chr1:4755542-4755561 MsG0180000350.01.T01:intron 60.0%
AGTGGTGAGAGCCTGGCCAT+TGG + Chr1:4755682-4755701 None:intergenic 60.0%
CCGGCTCTCAGCAATCCCTT+AGG - Chr1:4756729-4756748 MsG0180000350.01.T01:intron 60.0%
GGGATGGGGAGGATTCCATC+TGG - Chr1:4755507-4755526 MsG0180000350.01.T01:intron 60.0%
TCGGGTTCCCAGCAAAGTGG+AGG + Chr1:4756669-4756688 None:intergenic 60.0%
TTCCACCAGTGGTGAGAGCC+TGG + Chr1:4755689-4755708 None:intergenic 60.0%
! GAGCCGGCATCTCGGTTTGT+AGG + Chr1:4756716-4756735 None:intergenic 60.0%
! GGTTCGGGTTCCCAGCAAAG+TGG + Chr1:4756672-4756691 None:intergenic 60.0%
! TCTAGGGTGGGTGGCAGCAT+TGG + Chr1:4756521-4756540 None:intergenic 60.0%
!! GGTGGCAGCATTGGTAGTGC+AGG + Chr1:4756512-4756531 None:intergenic 60.0%
!! GTAGCGCCGGTAGTAGTCCA+AGG - Chr1:4757281-4757300 MsG0180000350.01.T01:intron 60.0%
CCTGTGGAAGGCCAATGGCC+AGG - Chr1:4755668-4755687 MsG0180000350.01.T01:CDS 65.0%
!! CCTGGCCATTGGCCTTCCAC+AGG + Chr1:4755671-4755690 None:intergenic 65.0%
GGCCAGGCTCTCACCACTGG+TGG - Chr1:4755684-4755703 MsG0180000350.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 4753503 4757720 4753503 ID=MsG0180000350.01;Name=MsG0180000350.01
Chr1 mRNA 4753503 4757720 4753503 ID=MsG0180000350.01.T01;Parent=MsG0180000350.01;Name=MsG0180000350.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.5|0.4|1|1|1|5|324|515
Chr1 exon 4757498 4757720 4757498 ID=MsG0180000350.01.T01:exon:5333;Parent=MsG0180000350.01.T01
Chr1 exon 4756453 4756647 4756453 ID=MsG0180000350.01.T01:exon:5334;Parent=MsG0180000350.01.T01
Chr1 exon 4755601 4755717 4755601 ID=MsG0180000350.01.T01:exon:5335;Parent=MsG0180000350.01.T01
Chr1 exon 4755300 4755369 4755300 ID=MsG0180000350.01.T01:exon:5336;Parent=MsG0180000350.01.T01
Chr1 exon 4753503 4754769 4753503 ID=MsG0180000350.01.T01:exon:5337;Parent=MsG0180000350.01.T01
Chr1 CDS 4757498 4757720 4757498 ID=MsG0180000350.01.T01:cds;Parent=MsG0180000350.01.T01
Chr1 CDS 4756453 4756647 4756453 ID=MsG0180000350.01.T01:cds;Parent=MsG0180000350.01.T01
Chr1 CDS 4755601 4755717 4755601 ID=MsG0180000350.01.T01:cds;Parent=MsG0180000350.01.T01
Chr1 CDS 4755300 4755369 4755300 ID=MsG0180000350.01.T01:cds;Parent=MsG0180000350.01.T01
Chr1 CDS 4753827 4754769 4753827 ID=MsG0180000350.01.T01:cds;Parent=MsG0180000350.01.T01
Chr1 three_prime_UTR 4753503 4753826 4753503 ID=MsG0180000350.01.T01:three_prime_utr;Parent=MsG0180000350.01.T01
Gene Sequence

>MsG0180000350.01.T01

ATGGATCTTGGTGGAGTGAGTTTAGAAGGTTTGGTTAGTTCAGATCCTGAGTCAAAAAATAAATGGTACAACAACAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACTGATCAACAAAGAAACTCTTCTTCACTTTTGAGATCTAATGCTACTACTACACTTTTTTCTTCTGATGGTTATAGTTCTGGAAGCATGCATGGAGGACCATTCACACCTTCTCAATGGATGGAGTTGGAACATCAGGCTTTGATCTATAAGTACATCACTGCAAATGTTGCTGTACCTCATCATTTGCTTTTACCTATCAGAAAAGCCCTTGATTCTGCTGGCTTATCTAGCTTCTCAACTGCTCTCCTCAGACCAAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAGAAATTCCAAGAATATGAACAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAACAAAGAGAATAACAACACTAGTGAGAGGATGCAGGATGGTCCTGCACTACCAATGCTGCCACCCACCCTAGAGTTGAAACCAAAGGAAAATCAATCTTTCATGATTCAAAAGCAGCACATTTCATATGATGAGTCCTCGAGGAACAATGAATTCGGGTTTGTCACTTCCGATTCCCTTCTGAACCCTTCACAGAAAACCTCCACTTTGCTGGGAACCCGAACCTTCGGTTCATCTTCACAAAACCCTACAAACCGAGATGCCGGCTCTCAGCAATCCCTTAGGCATTTTATCGACGACTTTCCCAAAACTCACTCAGATCACCAACATCATAACCGCTCAGGTGGTTTTTCTTGGCCGGAGCTCGACATGCAGTCTGATAGGACACAACTATCAATTTCAACACCGATGACTTCCTCGGACTTCATGTCGTTCACGTCCTCCGCAACCAATGAAAAACTCACACTTTCACCTCTTAGGCTATCAAGAGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAGTAGTGCTCTCAATAACAACAATGAATCATCAAACACTAATACTACAAAGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTTGGAGAGGTTCTTCATCTTAGTAATACTATTACCTACAATGCAAATGATGATCACTATGGCAGAGGCAACAACAATTCGTCCGCCCTAAATCTCATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATTGGATCATCGCCAACCGGAGTCCTTCAAAAGACTGCATTCGGATCACTTTCGAATAGTAGCGCCGGTAGTAGTCCAAGGGCAGAAAACAATAAAACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATGCTTCCTTTACTCCTTAG
Protein sequence

>MsG0180000350.01.T01

MDLGGVSLEGLVSSDPESKNKWYNNNGSGLLKQERSGTCTEDELRSFKLAKTDQQRNSSSLLRSNATTTLFSSDGYSSGSMHGGPFTPSQWMELEHQALIYKYITANVAVPHHLLLPIRKALDSAGLSSFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQRNSKNMNNLIGQDNASSAANTINRMFMNNKENNNTSERMQDGPALPMLPPTLELKPKENQSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKTSTLLGTRTFGSSSQNPTNRDAGSQQSLRHFIDDFPKTHSDHQHHNRSGGFSWPELDMQSDRTQLSISTPMTSSDFMSFTSSATNEKLTLSPLRLSREIDPIQMGLGVGSSALNNNNESSNTNTTKQANWIPITWESSMGGPLGEVLHLSNTITYNANDDHYGRGNNNSSALNLMTDGWDNHNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNASFTP*