Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000377.01.T01 | XP_039688445.1 | 95.567 | 203 | 9 | 0 | 1 | 203 | 1 | 203 | 6.20E-117 | 364 |
| MsG0180000377.01.T01 | XP_039688445.1 | 30.464 | 151 | 103 | 1 | 43 | 193 | 217 | 365 | 6.09E-16 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000377.01.T01 | A0A1P8AWH8 | 45.455 | 209 | 98 | 4 | 1 | 193 | 1 | 209 | 1.08E-47 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000377.01.T01 | A0A396JLI0 | 95.567 | 203 | 9 | 0 | 1 | 203 | 1 | 203 | 2.96e-117 | 364 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000376.01 | MsG0180000377.01 | 0.872774 | 2.455710e-67 | 1.040330e-63 |
| MsG0180000377.01 | MsG0380014807.01 | 0.805278 | 1.441977e-49 | 7.597351e-47 |
| MsG0180000377.01 | MsG0480023188.01 | 0.812182 | 4.820677e-51 | 3.044052e-48 |
| MsG0180000377.01 | MsG0880041912.01 | 0.838232 | 3.249655e-57 | 4.324804e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000377.01.T01 | MTR_1g017020 | 94.886 | 176 | 9 | 0 | 28 | 203 | 1 | 176 | 1.36e-113 | 344 |
| MsG0180000377.01.T01 | MTR_1g017020 | 30.464 | 151 | 103 | 1 | 43 | 193 | 190 | 338 | 7.20e-20 | 87.4 |
| MsG0180000377.01.T01 | MTR_1g017020 | 28.000 | 175 | 100 | 7 | 35 | 193 | 350 | 514 | 1.85e-14 | 71.6 |
| MsG0180000377.01.T01 | MTR_3g103610 | 33.146 | 178 | 111 | 2 | 22 | 193 | 2 | 177 | 1.08e-23 | 98.6 |
| MsG0180000377.01.T01 | MTR_3g103610 | 25.882 | 170 | 110 | 4 | 35 | 193 | 189 | 353 | 7.73e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000377.01.T01 | AT1G58370 | 45.455 | 209 | 98 | 4 | 1 | 193 | 1 | 209 | 1.10e-48 | 170 |
| MsG0180000377.01.T01 | AT1G58370 | 29.801 | 151 | 104 | 1 | 43 | 193 | 227 | 375 | 9.06e-19 | 84.3 |
| MsG0180000377.01.T01 | AT1G58370 | 25.455 | 110 | 77 | 1 | 84 | 193 | 448 | 552 | 4.33e-11 | 62.0 |
| MsG0180000377.01.T01 | AT1G58370 | 51.220 | 164 | 79 | 1 | 31 | 193 | 18 | 181 | 1.55e-47 | 167 |
| MsG0180000377.01.T01 | AT1G58370 | 29.801 | 151 | 104 | 1 | 43 | 193 | 199 | 347 | 1.00e-18 | 84.3 |
| MsG0180000377.01.T01 | AT1G58370 | 25.455 | 110 | 77 | 1 | 84 | 193 | 420 | 524 | 4.92e-11 | 61.6 |
| MsG0180000377.01.T01 | AT1G10050 | 53.374 | 163 | 62 | 2 | 40 | 199 | 181 | 332 | 2.31e-45 | 160 |
| MsG0180000377.01.T01 | AT1G10050 | 53.378 | 148 | 68 | 1 | 42 | 188 | 5 | 152 | 7.06e-42 | 150 |
| MsG0180000377.01.T01 | AT1G10050 | 37.179 | 156 | 91 | 3 | 33 | 188 | 342 | 490 | 1.81e-21 | 92.0 |
| MsG0180000377.01.T01 | AT1G10050 | 30.357 | 112 | 72 | 2 | 83 | 193 | 568 | 674 | 1.72e-12 | 66.2 |
| MsG0180000377.01.T01 | AT1G10050 | 53.374 | 163 | 62 | 2 | 40 | 199 | 181 | 332 | 2.31e-45 | 160 |
| MsG0180000377.01.T01 | AT1G10050 | 53.378 | 148 | 68 | 1 | 42 | 188 | 5 | 152 | 7.06e-42 | 150 |
| MsG0180000377.01.T01 | AT1G10050 | 37.179 | 156 | 91 | 3 | 33 | 188 | 342 | 490 | 1.81e-21 | 92.0 |
| MsG0180000377.01.T01 | AT1G10050 | 30.357 | 112 | 72 | 2 | 83 | 193 | 568 | 674 | 1.72e-12 | 66.2 |
| MsG0180000377.01.T01 | AT1G10050 | 53.374 | 163 | 62 | 2 | 40 | 199 | 213 | 364 | 2.64e-45 | 160 |
| MsG0180000377.01.T01 | AT1G10050 | 53.378 | 148 | 68 | 1 | 42 | 188 | 37 | 184 | 7.67e-42 | 150 |
| MsG0180000377.01.T01 | AT1G10050 | 37.179 | 156 | 91 | 3 | 33 | 188 | 374 | 522 | 2.00e-21 | 92.0 |
| MsG0180000377.01.T01 | AT1G10050 | 30.357 | 112 | 72 | 2 | 83 | 193 | 600 | 706 | 2.09e-12 | 65.9 |
| MsG0180000377.01.T01 | AT4G08160 | 31.788 | 151 | 101 | 1 | 43 | 193 | 27 | 175 | 8.01e-21 | 90.1 |
| MsG0180000377.01.T01 | AT4G08160 | 35.345 | 116 | 65 | 3 | 83 | 193 | 247 | 357 | 3.66e-15 | 73.9 |
| MsG0180000377.01.T01 | AT4G08160 | 31.788 | 151 | 101 | 1 | 43 | 193 | 27 | 175 | 1.12e-20 | 89.7 |
| MsG0180000377.01.T01 | AT4G08160 | 35.345 | 116 | 65 | 3 | 83 | 193 | 247 | 357 | 4.93e-15 | 73.6 |
Find 46 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTCTGCTTACACGGTTT+CGG | 0.290637 | 1:-5168261 | MsG0180000377.01.T01:CDS |
| GCTACAAATTATTTGTTCAT+TGG | 0.326978 | 1:-5168161 | MsG0180000377.01.T01:CDS |
| GTATGATATACGTTGTCATT+TGG | 0.365712 | 1:+5167903 | None:intergenic |
| AGGTGTAAATTTGATGGATT+CGG | 0.376961 | 1:-5168363 | MsG0180000377.01.T01:CDS |
| CTACAGAACTTCTGTTATGA+AGG | 0.391792 | 1:-5168054 | MsG0180000377.01.T01:intron |
| TGATCAAGGTGTAAATTTGA+TGG | 0.401599 | 1:-5168369 | MsG0180000377.01.T01:CDS |
| TACACCTTGATCACCTGCTT+TGG | 0.402831 | 1:+5168379 | None:intergenic |
| CTTCTGTTATGAAGGGTAGC+TGG | 0.404922 | 1:-5168046 | MsG0180000377.01.T01:CDS |
| GAAGGGTAGCTGGGAAAAGT+TGG | 0.414542 | 1:-5168036 | MsG0180000377.01.T01:CDS |
| GACCTTGCCAGCATTCGTTT+CGG | 0.423092 | 1:+5168315 | None:intergenic |
| AATTGAGATGCCAAGAGTTC+AGG | 0.433547 | 1:+5168426 | None:intergenic |
| TGGAGTATCCGGCCTTTCTC+AGG | 0.437664 | 1:-5168231 | MsG0180000377.01.T01:CDS |
| CTTATAAGCAAGTCAATTCC+AGG | 0.441038 | 1:+5167951 | None:intergenic |
| AAATAAAATACAACCCGATC+GGG | 0.455406 | 1:+5167987 | None:intergenic |
| TATTTGGAAGGACCTGCTCC+TGG | 0.458649 | 1:-5167969 | MsG0180000377.01.T01:CDS |
| ACAAATTATTTGTTCATTGG+AGG | 0.463668 | 1:-5168158 | MsG0180000377.01.T01:CDS |
| TCTCAAATGACCTGAACTCT+TGG | 0.471487 | 1:-5168436 | MsG0180000377.01.T01:CDS |
| CTGCTTTGGACGAAATTACA+TGG | 0.475645 | 1:+5168393 | None:intergenic |
| TTCTGTTATGAAGGGTAGCT+GGG | 0.476279 | 1:-5168045 | MsG0180000377.01.T01:CDS |
| TGGCATCTCAATTGCTGCAA+TGG | 0.476409 | 1:-5168416 | MsG0180000377.01.T01:CDS |
| AGCAAGTCAATTCCAGGAGC+AGG | 0.502349 | 1:+5167957 | None:intergenic |
| TTCCATTGGTTCTGCTTACA+CGG | 0.506731 | 1:-5168267 | MsG0180000377.01.T01:CDS |
| TTTGTTTGACAGATAATGGC+AGG | 0.509365 | 1:-5168515 | MsG0180000377.01.T01:intron |
| GAAATCTCACTCTCACTCTC+AGG | 0.509622 | 1:-5169114 | MsG0180000377.01.T01:intron |
| CAAATTATTTGTTCATTGGA+GGG | 0.512221 | 1:-5168157 | MsG0180000377.01.T01:intron |
| TCACCGACCGAAACGAATGC+TGG | 0.517919 | 1:-5168322 | MsG0180000377.01.T01:CDS |
| TTAGCAGCATTGCTCCCACT+TGG | 0.518845 | 1:+5168479 | None:intergenic |
| ATATACGTTGTCATTTGGAA+TGG | 0.520996 | 1:+5167908 | None:intergenic |
| AGCAGATTCCTGAGAAAGGC+CGG | 0.525243 | 1:+5168223 | None:intergenic |
| CACTGTCGACTAAACCCGAT+CGG | 0.527900 | 1:-5168001 | MsG0180000377.01.T01:CDS |
| TCGTCCAAAGCAGGTGATCA+AGG | 0.532341 | 1:-5168383 | MsG0180000377.01.T01:CDS |
| CAAATAAAATACAACCCGAT+CGG | 0.533364 | 1:+5167986 | None:intergenic |
| CATGTAATTTCGTCCAAAGC+AGG | 0.534471 | 1:-5168392 | MsG0180000377.01.T01:CDS |
| CATCAGCAGATTCCTGAGAA+AGG | 0.537612 | 1:+5168219 | None:intergenic |
| ATAATGGCAGGAAACATCTC+TGG | 0.543211 | 1:-5168503 | MsG0180000377.01.T01:CDS |
| ACTGTCGACTAAACCCGATC+GGG | 0.543731 | 1:-5168000 | MsG0180000377.01.T01:CDS |
| ATCACAGACAGAATTTCCAT+TGG | 0.553945 | 1:-5168281 | MsG0180000377.01.T01:CDS |
| GGAAACATCTCTGGTCCAAG+TGG | 0.555841 | 1:-5168494 | MsG0180000377.01.T01:CDS |
| GAGATTTCTTATGTTTCGAG+TGG | 0.565861 | 1:+5169129 | None:intergenic |
| AGATTTCTTATGTTTCGAGT+GGG | 0.566960 | 1:+5169130 | None:intergenic |
| TACAGAACTTCTGTTATGAA+GGG | 0.577471 | 1:-5168053 | MsG0180000377.01.T01:intron |
| GACCGAAACGAATGCTGGCA+AGG | 0.591612 | 1:-5168317 | MsG0180000377.01.T01:CDS |
| AACCGTGTAAGCAGAACCAA+TGG | 0.602847 | 1:+5168265 | None:intergenic |
| TTGCCAGCATTCGTTTCGGT+CGG | 0.605263 | 1:+5168319 | None:intergenic |
| GAAACATCTCTGGTCCAAGT+GGG | 0.659237 | 1:-5168493 | MsG0180000377.01.T01:CDS |
| GGTAGCTGGGAAAAGTTGGA+AGG | 0.662560 | 1:-5168032 | MsG0180000377.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTCAAATTATTAC+CGG | + | Chr1:5168401-5168420 | None:intergenic | 15.0% |
| !! | AGAGAATCTTAAAAAATAAC+TGG | + | Chr1:5168001-5168020 | None:intergenic | 20.0% |
| !! | GAGAATCTTAAAAAATAACT+GGG | + | Chr1:5168000-5168019 | None:intergenic | 20.0% |
| !!! | AAATTACAAAGTCTGAAATA+TGG | + | Chr1:5168091-5168110 | None:intergenic | 20.0% |
| !!! | TCTATCTTTTAAAGAAATTG+AGG | - | Chr1:5168962-5168981 | MsG0180000377.01.T01:intron | 20.0% |
| ! | AAAATAATGGTGAACATGTA+AGG | + | Chr1:5168995-5169014 | None:intergenic | 25.0% |
| ! | AAATAATGGTGAACATGTAA+GGG | + | Chr1:5168994-5169013 | None:intergenic | 25.0% |
| ! | ACAAATTATTTGTTCATTGG+AGG | - | Chr1:5168911-5168930 | MsG0180000377.01.T01:intron | 25.0% |
| ! | AGAAGTTCTGTAGAAAATAA+TGG | + | Chr1:5169008-5169027 | None:intergenic | 25.0% |
| ! | ATCTTAAAAAATAACTGGGA+AGG | + | Chr1:5167996-5168015 | None:intergenic | 25.0% |
| ! | ATGTGATGTATAATGCTTAA+TGG | - | Chr1:5168267-5168286 | MsG0180000377.01.T01:CDS | 25.0% |
| ! | CAAATTATTTGTTCATTGGA+GGG | - | Chr1:5168912-5168931 | MsG0180000377.01.T01:intron | 25.0% |
| ! | GCTACAAATTATTTGTTCAT+TGG | - | Chr1:5168908-5168927 | MsG0180000377.01.T01:intron | 25.0% |
| ! | TAAGGAAAATAGTTTCTTCT+TGG | - | Chr1:5168502-5168521 | MsG0180000377.01.T01:CDS | 25.0% |
| ! | TCTTAAAAAATAACTGGGAA+GGG | + | Chr1:5167995-5168014 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTTGACAGATAA+TGG | - | Chr1:5168550-5168569 | MsG0180000377.01.T01:intron | 25.0% |
| AAAAAATGAAAGCGACTGAA+TGG | - | Chr1:5168412-5168431 | MsG0180000377.01.T01:CDS | 30.0% | |
| AAATAAAATACAACCCGATC+GGG | + | Chr1:5169085-5169104 | None:intergenic | 30.0% | |
| CAAATAAAATACAACCCGAT+CGG | + | Chr1:5169086-5169105 | None:intergenic | 30.0% | |
| GTATGATATACGTTGTCATT+TGG | + | Chr1:5169169-5169188 | None:intergenic | 30.0% | |
| TACAGAACTTCTGTTATGAA+GGG | - | Chr1:5169016-5169035 | MsG0180000377.01.T01:intron | 30.0% | |
| TAGTGCTTCATAGATTAACA+CGG | + | Chr1:5168344-5168363 | None:intergenic | 30.0% | |
| TATGGATCATCCAATTTGAT+CGG | + | Chr1:5168073-5168092 | None:intergenic | 30.0% | |
| TGATCAAGGTGTAAATTTGA+TGG | - | Chr1:5168700-5168719 | MsG0180000377.01.T01:intron | 30.0% | |
| ! | AGATTTCTTATGTTTCGAGT+GGG | + | Chr1:5167942-5167961 | None:intergenic | 30.0% |
| ! | ATATACGTTGTCATTTGGAA+TGG | + | Chr1:5169164-5169183 | None:intergenic | 30.0% |
| !! | AGGTGTAAATTTGATGGATT+CGG | - | Chr1:5168706-5168725 | MsG0180000377.01.T01:intron | 30.0% |
| !! | TACAGTGAAGCTTTAAAAAC+AGG | + | Chr1:5168216-5168235 | None:intergenic | 30.0% |
| AACACAGATATAGATGAGAC+TGG | - | Chr1:5168363-5168382 | MsG0180000377.01.T01:CDS | 35.0% | |
| ACACACACACTAAACACTTA+AGG | - | Chr1:5168484-5168503 | MsG0180000377.01.T01:CDS | 35.0% | |
| ACACAGATATAGATGAGACT+GGG | - | Chr1:5168364-5168383 | MsG0180000377.01.T01:CDS | 35.0% | |
| ATCACAGACAGAATTTCCAT+TGG | - | Chr1:5168788-5168807 | MsG0180000377.01.T01:intron | 35.0% | |
| CTACAGAACTTCTGTTATGA+AGG | - | Chr1:5169015-5169034 | MsG0180000377.01.T01:intron | 35.0% | |
| CTTATAAGCAAGTCAATTCC+AGG | + | Chr1:5169121-5169140 | None:intergenic | 35.0% | |
| GAGATTTCTTATGTTTCGAG+TGG | + | Chr1:5167943-5167962 | None:intergenic | 35.0% | |
| GCATCAACACTTCATATTGA+AGG | + | Chr1:5168450-5168469 | None:intergenic | 35.0% | |
| ! | CTTTAAAAACAGGTCTGCAA+CGG | + | Chr1:5168206-5168225 | None:intergenic | 35.0% |
| ! | TTTGTTTGACAGATAATGGC+AGG | - | Chr1:5168554-5168573 | MsG0180000377.01.T01:intron | 35.0% |
| !! | CGATCGGGTTGTATTTTATT+TGG | - | Chr1:5169084-5169103 | MsG0180000377.01.T01:intron | 35.0% |
| !! | CGGGTTGTATTTTATTTGGA+AGG | - | Chr1:5169088-5169107 | MsG0180000377.01.T01:intron | 35.0% |
| AATTGAGATGCCAAGAGTTC+AGG | + | Chr1:5168646-5168665 | None:intergenic | 40.0% | |
| ATAATGGCAGGAAACATCTC+TGG | - | Chr1:5168566-5168585 | MsG0180000377.01.T01:intron | 40.0% | |
| CATGTAATTTCGTCCAAAGC+AGG | - | Chr1:5168677-5168696 | MsG0180000377.01.T01:intron | 40.0% | |
| GATCATCCAATTTGATCGGA+CGG | + | Chr1:5168069-5168088 | None:intergenic | 40.0% | |
| TAGACCGTCCAATCTTTGAT+AGG | - | Chr1:5168135-5168154 | MsG0180000377.01.T01:intron | 40.0% | |
| TCTCAAATGACCTGAACTCT+TGG | - | Chr1:5168633-5168652 | MsG0180000377.01.T01:intron | 40.0% | |
| TTCTGTTATGAAGGGTAGCT+GGG | - | Chr1:5169024-5169043 | MsG0180000377.01.T01:intron | 40.0% | |
| ! | CTGCTTTGGACGAAATTACA+TGG | + | Chr1:5168679-5168698 | None:intergenic | 40.0% |
| ! | CTTCATATTGAAGGCGTGTT+CGG | + | Chr1:5168441-5168460 | None:intergenic | 40.0% |
| !! | TTCCATTGGTTCTGCTTACA+CGG | - | Chr1:5168802-5168821 | MsG0180000377.01.T01:intron | 40.0% |
| AACCGTGTAAGCAGAACCAA+TGG | + | Chr1:5168807-5168826 | None:intergenic | 45.0% | |
| CATCAGCAGATTCCTGAGAA+AGG | + | Chr1:5168853-5168872 | None:intergenic | 45.0% | |
| CCGTCCAATCTTTGATAGGA+CGG | - | Chr1:5168139-5168158 | MsG0180000377.01.T01:intron | 45.0% | |
| CCGTCCTATCAAAGATTGGA+CGG | + | Chr1:5168142-5168161 | None:intergenic | 45.0% | |
| CTTCTGTTATGAAGGGTAGC+TGG | - | Chr1:5169023-5169042 | MsG0180000377.01.T01:intron | 45.0% | |
| GAAACATCTCTGGTCCAAGT+GGG | - | Chr1:5168576-5168595 | MsG0180000377.01.T01:intron | 45.0% | |
| GAAATCTCACTCTCACTCTC+AGG | - | Chr1:5167955-5167974 | MsG0180000377.01.T01:CDS | 45.0% | |
| GTGACCGTCCTATCAAAGAT+TGG | + | Chr1:5168146-5168165 | None:intergenic | 45.0% | |
| TACACCTTGATCACCTGCTT+TGG | + | Chr1:5168693-5168712 | None:intergenic | 45.0% | |
| TGGCATCTCAATTGCTGCAA+TGG | - | Chr1:5168653-5168672 | MsG0180000377.01.T01:intron | 45.0% | |
| ! | TACACGGTTTCGGCTTTTGT+TGG | - | Chr1:5168818-5168837 | MsG0180000377.01.T01:intron | 45.0% |
| ! | TGGTTCTGCTTACACGGTTT+CGG | - | Chr1:5168808-5168827 | MsG0180000377.01.T01:intron | 45.0% |
| !! | TCGGCTTTTGTTGGAGTATC+CGG | - | Chr1:5168827-5168846 | MsG0180000377.01.T01:intron | 45.0% |
| !!! | TTGTAATTTTAATTTTTTAA+AGG | - | Chr1:5168102-5168121 | MsG0180000377.01.T01:intron | 5.0% |
| AGCAAGTCAATTCCAGGAGC+AGG | + | Chr1:5169115-5169134 | None:intergenic | 50.0% | |
| AGCAGATTCCTGAGAAAGGC+CGG | + | Chr1:5168849-5168868 | None:intergenic | 50.0% | |
| GAAGGGTAGCTGGGAAAAGT+TGG | - | Chr1:5169033-5169052 | MsG0180000377.01.T01:intron | 50.0% | |
| GACCTTGCCAGCATTCGTTT+CGG | + | Chr1:5168757-5168776 | None:intergenic | 50.0% | |
| GGAAACATCTCTGGTCCAAG+TGG | - | Chr1:5168575-5168594 | MsG0180000377.01.T01:intron | 50.0% | |
| GGTAGCTGGGAAAAGTTGGA+AGG | - | Chr1:5169037-5169056 | MsG0180000377.01.T01:intron | 50.0% | |
| GGTCTGCAACGGCTACATTA+AGG | + | Chr1:5168195-5168214 | None:intergenic | 50.0% | |
| TATTTGGAAGGACCTGCTCC+TGG | - | Chr1:5169100-5169119 | MsG0180000377.01.T01:intron | 50.0% | |
| TCGTCCAAAGCAGGTGATCA+AGG | - | Chr1:5168686-5168705 | MsG0180000377.01.T01:intron | 50.0% | |
| TTAGCAGCATTGCTCCCACT+TGG | + | Chr1:5168593-5168612 | None:intergenic | 50.0% | |
| TTGCCAGCATTCGTTTCGGT+CGG | + | Chr1:5168753-5168772 | None:intergenic | 50.0% | |
| ! | ACTGTCGACTAAACCCGATC+GGG | - | Chr1:5169069-5169088 | MsG0180000377.01.T01:intron | 50.0% |
| ! | CACTGTCGACTAAACCCGAT+CGG | - | Chr1:5169068-5169087 | MsG0180000377.01.T01:intron | 50.0% |
| GACCGAAACGAATGCTGGCA+AGG | - | Chr1:5168752-5168771 | MsG0180000377.01.T01:intron | 55.0% | |
| GCGTGACCGTCCGATCAAAT+TGG | - | Chr1:5168060-5168079 | MsG0180000377.01.T01:intron | 55.0% | |
| TCACCGACCGAAACGAATGC+TGG | - | Chr1:5168747-5168766 | MsG0180000377.01.T01:intron | 55.0% | |
| ! | TGGAGTATCCGGCCTTTCTC+AGG | - | Chr1:5168838-5168857 | MsG0180000377.01.T01:intron | 55.0% |
| AGACTGGGCACGACTCACAC+CGG | - | Chr1:5168379-5168398 | MsG0180000377.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 5167899 | 5169192 | 5167899 | ID=MsG0180000377.01;Name=MsG0180000377.01 |
| Chr1 | mRNA | 5167899 | 5169192 | 5167899 | ID=MsG0180000377.01.T01;Parent=MsG0180000377.01;Name=MsG0180000377.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0|0|1|0.5|0.66|3|0|205 |
| Chr1 | exon | 5169115 | 5169192 | 5169115 | ID=MsG0180000377.01.T01:exon:2790;Parent=MsG0180000377.01.T01 |
| Chr1 | exon | 5168158 | 5168525 | 5168158 | ID=MsG0180000377.01.T01:exon:2791;Parent=MsG0180000377.01.T01 |
| Chr1 | exon | 5167899 | 5168070 | 5167899 | ID=MsG0180000377.01.T01:exon:2792;Parent=MsG0180000377.01.T01 |
| Chr1 | CDS | 5169115 | 5169192 | 5169115 | ID=MsG0180000377.01.T01:cds;Parent=MsG0180000377.01.T01 |
| Chr1 | CDS | 5168158 | 5168525 | 5168158 | ID=MsG0180000377.01.T01:cds;Parent=MsG0180000377.01.T01 |
| Chr1 | CDS | 5167899 | 5168070 | 5167899 | ID=MsG0180000377.01.T01:cds;Parent=MsG0180000377.01.T01 |
| Gene Sequence |
| Protein sequence |
