Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000431.01.T01 | XP_003588984.1 | 99.338 | 453 | 3 | 0 | 1 | 453 | 1 | 453 | 0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000431.01.T01 | O04353 | 65.079 | 441 | 154 | 0 | 13 | 453 | 8 | 448 | 0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000431.01.T01 | G7I9X4 | 99.338 | 453 | 3 | 0 | 1 | 453 | 1 | 453 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000431.01 | MsG0380016216.01 | 0.825832 | 3.780694e-54 | 3.485004e-51 |
| MsG0180000431.01 | MsG0480022586.01 | 0.802036 | 6.788552e-49 | 3.291429e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000431.01.T01 | MTR_1g016070 | 99.338 | 453 | 3 | 0 | 1 | 453 | 1 | 453 | 0.0 | 934 |
| MsG0180000431.01.T01 | MTR_8g056100 | 62.921 | 445 | 164 | 1 | 10 | 453 | 5 | 449 | 0.0 | 600 |
| MsG0180000431.01.T01 | MTR_1g016060 | 77.008 | 361 | 79 | 1 | 2 | 362 | 1 | 357 | 0.0 | 578 |
| MsG0180000431.01.T01 | MTR_5g045630 | 35.135 | 74 | 47 | 1 | 13 | 85 | 7 | 80 | 3.24e-12 | 63.9 |
| MsG0180000431.01.T01 | MTR_5g059820 | 33.333 | 123 | 69 | 2 | 4 | 113 | 499 | 621 | 2.25e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000431.01.T01 | AT2G46210 | 62.914 | 453 | 164 | 1 | 1 | 453 | 1 | 449 | 0.0 | 619 |
| MsG0180000431.01.T01 | AT3G61580 | 63.576 | 453 | 161 | 1 | 1 | 453 | 1 | 449 | 0.0 | 618 |
| MsG0180000431.01.T01 | AT1G26340 | 42.308 | 78 | 43 | 2 | 7 | 83 | 2 | 78 | 4.98e-13 | 66.6 |
| MsG0180000431.01.T01 | AT5G48810 | 40.000 | 70 | 41 | 1 | 15 | 83 | 9 | 78 | 6.04e-11 | 60.8 |
Find 110 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACAATTGTGTGTCTTTC+TGG | -0.015328 | 1:-5918725 | MsG0180000431.01.T01:CDS |
| ATGTTCTTTGTCAGTGTTTA+TGG | 0.122801 | 1:-5919569 | MsG0180000431.01.T01:CDS |
| TGGTTTCTTGTTTACCTAAT+TGG | 0.140709 | 1:-5919040 | MsG0180000431.01.T01:CDS |
| CAGTTTATGCAGATTCTTTC+TGG | 0.150958 | 1:-5919416 | MsG0180000431.01.T01:CDS |
| GCATAAACTGATTCCATTTC+CGG | 0.178406 | 1:+5919429 | None:intergenic |
| CGCGGTCGTGCACGTGCTTT+CGG | 0.203504 | 1:-5919528 | MsG0180000431.01.T01:CDS |
| GGTTTCTTGTTTACCTAATT+GGG | 0.245592 | 1:-5919039 | MsG0180000431.01.T01:CDS |
| TCTTGGATGGATTGGTTTCA+TGG | 0.255282 | 1:-5918855 | MsG0180000431.01.T01:CDS |
| CTTTCTGGTAATGTTCTTGC+TGG | 0.262893 | 1:-5919401 | MsG0180000431.01.T01:CDS |
| TTGATGTGAAGTGTTCTTCT+TGG | 0.272066 | 1:-5918872 | MsG0180000431.01.T01:CDS |
| AGCTTCCCAAACTAAATTTC+TGG | 0.273685 | 1:+5918629 | None:intergenic |
| CGTGCTTTCGGGAGGATTAA+TGG | 0.279872 | 1:-5919516 | MsG0180000431.01.T01:CDS |
| TTTGAGGAATGCAGCTTTGC+AGG | 0.282309 | 1:-5918676 | MsG0180000431.01.T01:CDS |
| GAGGATTAATGGGTCTTCTT+TGG | 0.284547 | 1:-5919505 | MsG0180000431.01.T01:CDS |
| GCGGTCGTGCACGTGCTTTC+GGG | 0.286781 | 1:-5919527 | MsG0180000431.01.T01:CDS |
| TCATGATTCTGGTCATTATC+AGG | 0.288041 | 1:-5919462 | MsG0180000431.01.T01:CDS |
| CGGTTCCCAGAAATTTAGTT+TGG | 0.302435 | 1:-5918635 | MsG0180000431.01.T01:CDS |
| GGTTGGATTGGTCATGATTC+TGG | 0.304792 | 1:-5919473 | MsG0180000431.01.T01:CDS |
| AGATCTACGACGTTTCAAAA+TGG | 0.310327 | 1:-5919847 | MsG0180000431.01.T01:CDS |
| AACTGCCAGTGGCAAAGTTT+TGG | 0.314883 | 1:+5919720 | None:intergenic |
| TTCTGGTCATTATCAGGTTA+TGG | 0.330574 | 1:-5919456 | MsG0180000431.01.T01:CDS |
| AAAACCCTCTCACCCCAATT+AGG | 0.338161 | 1:+5919026 | None:intergenic |
| AAAAGTTCCATCTTTCTATT+AGG | 0.338194 | 1:+5919098 | None:intergenic |
| TTTGAGGAAGATTTCGCCTT+TGG | 0.369780 | 1:-5918778 | MsG0180000431.01.T01:CDS |
| TGCTTACTATTCAGACTTTG+AGG | 0.372522 | 1:-5918692 | MsG0180000431.01.T01:CDS |
| GAAGATTTCGCCTTTGGTTA+AGG | 0.373280 | 1:-5918772 | MsG0180000431.01.T01:CDS |
| AAAGAACATGACAGAAATAA+TGG | 0.374416 | 1:+5919583 | None:intergenic |
| TTCTTTGGATTCAAAGTGGT+TGG | 0.376121 | 1:-5919490 | MsG0180000431.01.T01:CDS |
| GTGCTTTCGGGAGGATTAAT+GGG | 0.378598 | 1:-5919515 | MsG0180000431.01.T01:CDS |
| AGGTTATGGTTAACCGGAAA+TGG | 0.379608 | 1:-5919442 | MsG0180000431.01.T01:CDS |
| GTCCACCGACGGCTCATGAT+TGG | 0.391021 | 1:-5918920 | MsG0180000431.01.T01:CDS |
| GCTTGGTTAGTTCGGAGAAA+AGG | 0.393155 | 1:+5919651 | None:intergenic |
| GTCGTAGATCTTGCCGTCAA+TGG | 0.400669 | 1:+5919859 | None:intergenic |
| TAAGCATTGAATGGTGGAAA+TGG | 0.406654 | 1:-5919376 | MsG0180000431.01.T01:CDS |
| CAAACCCAGCTTGGTTAGTT+CGG | 0.411614 | 1:+5919643 | None:intergenic |
| ATTATCAGGTTATGGTTAAC+CGG | 0.413560 | 1:-5919448 | MsG0180000431.01.T01:CDS |
| CAAACTAAATTTCTGGGAAC+CGG | 0.414537 | 1:+5918636 | None:intergenic |
| AATGGTAAATGTTGAAGATC+AGG | 0.419846 | 1:+5919308 | None:intergenic |
| TTGGATTTGGTACCCTTTGT+TGG | 0.423243 | 1:-5919060 | MsG0180000431.01.T01:CDS |
| AGTGTTCTTCTTGGATGGAT+TGG | 0.433868 | 1:-5918863 | MsG0180000431.01.T01:CDS |
| GCTTCCCAAACTAAATTTCT+GGG | 0.439125 | 1:+5918630 | None:intergenic |
| CTTGGTTAGTTCGGAGAAAA+GGG | 0.447211 | 1:+5919652 | None:intergenic |
| CATCTTGGCCGGCGAGGTTG+AGG | 0.457435 | 1:+5919792 | None:intergenic |
| GATCTACGACGTTTCAAAAT+GGG | 0.459792 | 1:-5919846 | MsG0180000431.01.T01:CDS |
| CAGAAAGACACACAATTGTA+AGG | 0.461532 | 1:+5918726 | None:intergenic |
| GTCTTCCACGGTGTAATTTG+AGG | 0.464009 | 1:-5918794 | MsG0180000431.01.T01:CDS |
| CTCTTCGAACAAACCCAGCT+TGG | 0.464229 | 1:+5919634 | None:intergenic |
| CTGGGTTTGTTCGAAGAGAA+AGG | 0.465104 | 1:-5919629 | MsG0180000431.01.T01:CDS |
| TGTGAAGTGTTCTTCTTGGA+TGG | 0.468484 | 1:-5918868 | MsG0180000431.01.T01:CDS |
| TCTTGTAATGAAATGTAGGT+TGG | 0.470709 | 1:+5919920 | None:intergenic |
| GGCGAGGGATCTTACTAAAC+CGG | 0.471922 | 1:-5918655 | MsG0180000431.01.T01:CDS |
| TGGGAAGCTGTTAATACTCA+TGG | 0.473340 | 1:-5918615 | MsG0180000431.01.T01:CDS |
| TTCTCCGAACTAACCAAGCT+GGG | 0.478322 | 1:-5919647 | MsG0180000431.01.T01:CDS |
| TGGATTCAAAGTGGTTGGAT+TGG | 0.479141 | 1:-5919485 | MsG0180000431.01.T01:CDS |
| GGTTCCCAGAAATTTAGTTT+GGG | 0.480040 | 1:-5918634 | MsG0180000431.01.T01:CDS |
| CTCGCCGCCGGGATGGTGGT+TGG | 0.480612 | 1:+5919823 | None:intergenic |
| TCTTGGTTAGTTACCAGCAT+TGG | 0.482920 | 1:-5919202 | MsG0180000431.01.T01:CDS |
| ATTTGTTTCCGCGTCTTCCA+CGG | 0.485220 | 1:-5918806 | MsG0180000431.01.T01:CDS |
| TTTCTCCGAACTAACCAAGC+TGG | 0.489941 | 1:-5919648 | MsG0180000431.01.T01:CDS |
| GGAATGCATCAGTGACATCT+TGG | 0.491255 | 1:+5919777 | None:intergenic |
| GTTTCTTGTTTACCTAATTG+GGG | 0.497767 | 1:-5919038 | MsG0180000431.01.T01:CDS |
| GTTTACCTAATTGGGGTGAG+AGG | 0.499023 | 1:-5919031 | MsG0180000431.01.T01:CDS |
| ATCCTGTGATGTGCTTTGCT+AGG | 0.503274 | 1:-5919172 | MsG0180000431.01.T01:CDS |
| TTTACCTAATTGGGGTGAGA+GGG | 0.503473 | 1:-5919030 | MsG0180000431.01.T01:CDS |
| GAGGAGAGGAAGCTCGCCGC+CGG | 0.506758 | 1:+5919811 | None:intergenic |
| TGGAGATGTTTGTACGCGGA+TGG | 0.507552 | 1:+5919740 | None:intergenic |
| TGGTTTGAGAAGCAAGCTCA+TGG | 0.509660 | 1:-5918900 | MsG0180000431.01.T01:CDS |
| CAATTGTGTGTCTTTCTGGA+GGG | 0.509904 | 1:-5918721 | MsG0180000431.01.T01:CDS |
| AAAAGTGCCTAATAGAAAGA+TGG | 0.513187 | 1:-5919105 | MsG0180000431.01.T01:CDS |
| ACAATTGTGTGTCTTTCTGG+AGG | 0.515434 | 1:-5918722 | MsG0180000431.01.T01:CDS |
| AAGTTCTTGTAATGAAATGT+AGG | 0.520932 | 1:+5919916 | None:intergenic |
| GAAGCTCGCCGCCGGGATGG+TGG | 0.525178 | 1:+5919819 | None:intergenic |
| CAGGATAATAACTCCAATGC+TGG | 0.530353 | 1:+5919189 | None:intergenic |
| TGCATCAGTGACATCTTGGC+CGG | 0.539741 | 1:+5919781 | None:intergenic |
| ACAACACTCGCGGCGATGCA+TGG | 0.546353 | 1:-5919886 | MsG0180000431.01.T01:CDS |
| AGCCTAGCAAAGCACATCAC+AGG | 0.547383 | 1:+5919170 | None:intergenic |
| TTGCTGGTATAAGCATTGAA+TGG | 0.551437 | 1:-5919385 | MsG0180000431.01.T01:CDS |
| GAGGAAGCTCGCCGCCGGGA+TGG | 0.553344 | 1:+5919816 | None:intergenic |
| AAATGGGCCAACCACCATCC+CGG | 0.554203 | 1:-5919830 | MsG0180000431.01.T01:CDS |
| GTAAACAAGAAACCAACAAA+GGG | 0.556044 | 1:+5919048 | None:intergenic |
| AAGTGAAGTAAAGAACTTCG+AGG | 0.560691 | 1:+5919274 | None:intergenic |
| AGGAGAGGAAGCTCGCCGCC+GGG | 0.564363 | 1:+5919812 | None:intergenic |
| CATCTCCAAAACTTTGCCAC+TGG | 0.565056 | 1:-5919725 | MsG0180000431.01.T01:CDS |
| AAGACACACAATTGTAAGGA+AGG | 0.570281 | 1:+5918730 | None:intergenic |
| TGTTTATGTTGGTCCACCGA+CGG | 0.571686 | 1:-5918931 | MsG0180000431.01.T01:CDS |
| GATGTTTGTACGCGGATGGA+GGG | 0.572576 | 1:+5919744 | None:intergenic |
| TTGCACAGATCCTTAACCAA+AGG | 0.580004 | 1:+5918762 | None:intergenic |
| GGAATGCAGCTTTGCAGGCG+AGG | 0.581525 | 1:-5918671 | MsG0180000431.01.T01:CDS |
| GAATGCAGCTTTGCAGGCGA+GGG | 0.584835 | 1:-5918670 | MsG0180000431.01.T01:CDS |
| CAAGACTGTTACAAGCAAGA+TGG | 0.586751 | 1:+5919339 | None:intergenic |
| GATGCATGGATCTCCATTGA+CGG | 0.586989 | 1:-5919872 | MsG0180000431.01.T01:CDS |
| CTTCCTCTCCTCAACCTCGC+CGG | 0.591399 | 1:-5919800 | MsG0180000431.01.T01:CDS |
| GTCGTGCACGTGCTTTCGGG+AGG | 0.591568 | 1:-5919524 | MsG0180000431.01.T01:CDS |
| GTTTGTACGCGGATGGAGGG+TGG | 0.591834 | 1:+5919747 | None:intergenic |
| AACCAATCATGAGCCGTCGG+TGG | 0.594561 | 1:+5918918 | None:intergenic |
| AAATTACACCGTGGAAGACG+CGG | 0.594958 | 1:+5918798 | None:intergenic |
| AGATGTTTGTACGCGGATGG+AGG | 0.612902 | 1:+5919743 | None:intergenic |
| GGTAAACAAGAAACCAACAA+AGG | 0.615111 | 1:+5919047 | None:intergenic |
| GGTCTTCTTTGGATTCAAAG+TGG | 0.627395 | 1:-5919494 | MsG0180000431.01.T01:CDS |
| TCAAACCAATCATGAGCCGT+CGG | 0.628168 | 1:+5918915 | None:intergenic |
| CGGATGGAGGGTGGAAAGCG+AGG | 0.630693 | 1:+5919756 | None:intergenic |
| CAGTGACATCTTGGCCGGCG+AGG | 0.636188 | 1:+5919786 | None:intergenic |
| TTGTTCGAAGAGAAAGGACA+CGG | 0.653082 | 1:-5919623 | MsG0180000431.01.T01:CDS |
| CTGGTATAAGCATTGAATGG+TGG | 0.657971 | 1:-5919382 | MsG0180000431.01.T01:CDS |
| TGGATGGATTGGTTTCATGG+TGG | 0.682579 | 1:-5918852 | MsG0180000431.01.T01:CDS |
| GTCACGTAGGTAACTGCCAG+TGG | 0.687851 | 1:+5919709 | None:intergenic |
| TGGCCGGCGAGGTTGAGGAG+AGG | 0.689110 | 1:+5919797 | None:intergenic |
| CAGAGACGACGTAGTCACGT+AGG | 0.725034 | 1:+5919696 | None:intergenic |
| TGGGCCAACCACCATCCCGG+CGG | 0.736027 | 1:-5919827 | MsG0180000431.01.T01:CDS |
| ATCTTCCTCAAATTACACCG+TGG | 0.747566 | 1:+5918789 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTACTTTGAATCATTTTT+CGG | - | Chr1:5919603-5919622 | MsG0180000431.01.T01:CDS | 15.0% |
| ! | AAAAGTTCCATCTTTCTATT+AGG | + | Chr1:5919466-5919485 | None:intergenic | 25.0% |
| ! | AAAGAACATGACAGAAATAA+TGG | + | Chr1:5918981-5919000 | None:intergenic | 25.0% |
| ! | AAGTTCTTGTAATGAAATGT+AGG | + | Chr1:5918648-5918667 | None:intergenic | 25.0% |
| !! | AATAGAAAGATGGAACTTTT+AGG | - | Chr1:5919466-5919485 | MsG0180000431.01.T01:CDS | 25.0% |
| !! | ATAGAAAGATGGAACTTTTA+GGG | - | Chr1:5919467-5919486 | MsG0180000431.01.T01:CDS | 25.0% |
| !!! | TCACTTACTTCTTGTTTTTA+TGG | - | Chr1:5919304-5919323 | MsG0180000431.01.T01:CDS | 25.0% |
| !!! | TGAATTTTGATTCTTTTGCT+AGG | - | Chr1:5919335-5919354 | MsG0180000431.01.T01:CDS | 25.0% |
| AATGGTAAATGTTGAAGATC+AGG | + | Chr1:5919256-5919275 | None:intergenic | 30.0% | |
| ATGTTCTTTGTCAGTGTTTA+TGG | - | Chr1:5918992-5919011 | MsG0180000431.01.T01:CDS | 30.0% | |
| ATTATCAGGTTATGGTTAAC+CGG | - | Chr1:5919113-5919132 | MsG0180000431.01.T01:CDS | 30.0% | |
| GTAAACAAGAAACCAACAAA+GGG | + | Chr1:5919516-5919535 | None:intergenic | 30.0% | |
| TCTTGTAATGAAATGTAGGT+TGG | + | Chr1:5918644-5918663 | None:intergenic | 30.0% | |
| ! | GGTTTCTTGTTTACCTAATT+GGG | - | Chr1:5919522-5919541 | MsG0180000431.01.T01:CDS | 30.0% |
| ! | GTTTCTTGTTTACCTAATTG+GGG | - | Chr1:5919523-5919542 | MsG0180000431.01.T01:CDS | 30.0% |
| ! | TGGTTTCTTGTTTACCTAAT+TGG | - | Chr1:5919521-5919540 | MsG0180000431.01.T01:CDS | 30.0% |
| !! | AAAAGTGCCTAATAGAAAGA+TGG | - | Chr1:5919456-5919475 | MsG0180000431.01.T01:CDS | 30.0% |
| AAGACACACAATTGTAAGGA+AGG | + | Chr1:5919834-5919853 | None:intergenic | 35.0% | |
| AAGTGAAGTAAAGAACTTCG+AGG | + | Chr1:5919290-5919309 | None:intergenic | 35.0% | |
| AGATCTACGACGTTTCAAAA+TGG | - | Chr1:5918714-5918733 | MsG0180000431.01.T01:CDS | 35.0% | |
| AGCTTCCCAAACTAAATTTC+TGG | + | Chr1:5919935-5919954 | None:intergenic | 35.0% | |
| CAGAAAGACACACAATTGTA+AGG | + | Chr1:5919838-5919857 | None:intergenic | 35.0% | |
| CAGTTTATGCAGATTCTTTC+TGG | - | Chr1:5919145-5919164 | MsG0180000431.01.T01:CDS | 35.0% | |
| CTTACAATTGTGTGTCTTTC+TGG | - | Chr1:5919836-5919855 | MsG0180000431.01.T01:CDS | 35.0% | |
| GATCTACGACGTTTCAAAAT+GGG | - | Chr1:5918715-5918734 | MsG0180000431.01.T01:CDS | 35.0% | |
| GCTTCCCAAACTAAATTTCT+GGG | + | Chr1:5919934-5919953 | None:intergenic | 35.0% | |
| GGTAAACAAGAAACCAACAA+AGG | + | Chr1:5919517-5919536 | None:intergenic | 35.0% | |
| TCATGATTCTGGTCATTATC+AGG | - | Chr1:5919099-5919118 | MsG0180000431.01.T01:CDS | 35.0% | |
| TGCTTACTATTCAGACTTTG+AGG | - | Chr1:5919869-5919888 | MsG0180000431.01.T01:CDS | 35.0% | |
| TTCGAGGAAACAACGAAAAA+TGG | + | Chr1:5919274-5919293 | None:intergenic | 35.0% | |
| TTCTGGTCATTATCAGGTTA+TGG | - | Chr1:5919105-5919124 | MsG0180000431.01.T01:CDS | 35.0% | |
| TTCTTTGGATTCAAAGTGGT+TGG | - | Chr1:5919071-5919090 | MsG0180000431.01.T01:CDS | 35.0% | |
| ! | CAAACTAAATTTCTGGGAAC+CGG | + | Chr1:5919928-5919947 | None:intergenic | 35.0% |
| ! | GCATAAACTGATTCCATTTC+CGG | + | Chr1:5919135-5919154 | None:intergenic | 35.0% |
| ! | GGTTCCCAGAAATTTAGTTT+GGG | - | Chr1:5919927-5919946 | MsG0180000431.01.T01:CDS | 35.0% |
| ! | TGATTCTTTTGCTAGGTTCT+TGG | - | Chr1:5919342-5919361 | MsG0180000431.01.T01:CDS | 35.0% |
| ! | TTGATGTGAAGTGTTCTTCT+TGG | - | Chr1:5919689-5919708 | MsG0180000431.01.T01:CDS | 35.0% |
| ! | TTTTCGGCTAGTGTTTATGT+TGG | - | Chr1:5919619-5919638 | MsG0180000431.01.T01:CDS | 35.0% |
| !! | TAAGCATTGAATGGTGGAAA+TGG | - | Chr1:5919185-5919204 | MsG0180000431.01.T01:CDS | 35.0% |
| !! | TTGCTGGTATAAGCATTGAA+TGG | - | Chr1:5919176-5919195 | MsG0180000431.01.T01:CDS | 35.0% |
| !!! | AAAGATGGAACTTTTAGGGT+TGG | - | Chr1:5919471-5919490 | MsG0180000431.01.T01:CDS | 35.0% |
| !!! | ATGTAGGTTGGTTTTAGCAA+CGG | + | Chr1:5918632-5918651 | None:intergenic | 35.0% |
| !!! | TGTTTTGTTTTGTGAAAGCG+CGG | - | Chr1:5919015-5919034 | MsG0180000431.01.T01:CDS | 35.0% |
| !!! | TTGCTAGTTTTTGTGTGACT+GGG | - | Chr1:5919566-5919585 | MsG0180000431.01.T01:CDS | 35.0% |
| ACAATTGTGTGTCTTTCTGG+AGG | - | Chr1:5919839-5919858 | MsG0180000431.01.T01:CDS | 40.0% | |
| AGGTTATGGTTAACCGGAAA+TGG | - | Chr1:5919119-5919138 | MsG0180000431.01.T01:CDS | 40.0% | |
| AGTGTTCTTCTTGGATGGAT+TGG | - | Chr1:5919698-5919717 | MsG0180000431.01.T01:CDS | 40.0% | |
| ATCTTCCTCAAATTACACCG+TGG | + | Chr1:5919775-5919794 | None:intergenic | 40.0% | |
| CAAGACTGTTACAAGCAAGA+TGG | + | Chr1:5919225-5919244 | None:intergenic | 40.0% | |
| CAATTGTGTGTCTTTCTGGA+GGG | - | Chr1:5919840-5919859 | MsG0180000431.01.T01:CDS | 40.0% | |
| CAGGATAATAACTCCAATGC+TGG | + | Chr1:5919375-5919394 | None:intergenic | 40.0% | |
| CGGTTCCCAGAAATTTAGTT+TGG | - | Chr1:5919926-5919945 | MsG0180000431.01.T01:CDS | 40.0% | |
| CTTCAAAAACACAACACTCG+CGG | - | Chr1:5918665-5918684 | MsG0180000431.01.T01:CDS | 40.0% | |
| GAAGATTTCGCCTTTGGTTA+AGG | - | Chr1:5919789-5919808 | MsG0180000431.01.T01:CDS | 40.0% | |
| GGTCTTCTTTGGATTCAAAG+TGG | - | Chr1:5919067-5919086 | MsG0180000431.01.T01:CDS | 40.0% | |
| TGGATTCAAAGTGGTTGGAT+TGG | - | Chr1:5919076-5919095 | MsG0180000431.01.T01:CDS | 40.0% | |
| TGGGAAGCTGTTAATACTCA+TGG | - | Chr1:5919946-5919965 | MsG0180000431.01.T01:CDS | 40.0% | |
| TTGCACAGATCCTTAACCAA+AGG | + | Chr1:5919802-5919821 | None:intergenic | 40.0% | |
| TTGTTCGAAGAGAAAGGACA+CGG | - | Chr1:5918938-5918957 | MsG0180000431.01.T01:CDS | 40.0% | |
| TTTACCTAATTGGGGTGAGA+GGG | - | Chr1:5919531-5919550 | MsG0180000431.01.T01:CDS | 40.0% | |
| TTTGAGGAAGATTTCGCCTT+TGG | - | Chr1:5919783-5919802 | MsG0180000431.01.T01:CDS | 40.0% | |
| ! | CTTGGTTAGTTCGGAGAAAA+GGG | + | Chr1:5918912-5918931 | None:intergenic | 40.0% |
| ! | CTTTCTGGTAATGTTCTTGC+TGG | - | Chr1:5919160-5919179 | MsG0180000431.01.T01:CDS | 40.0% |
| ! | GAGGATTAATGGGTCTTCTT+TGG | - | Chr1:5919056-5919075 | MsG0180000431.01.T01:CDS | 40.0% |
| ! | TCTTGGTTAGTTACCAGCAT+TGG | - | Chr1:5919359-5919378 | MsG0180000431.01.T01:CDS | 40.0% |
| ! | TGTGAAGTGTTCTTCTTGGA+TGG | - | Chr1:5919693-5919712 | MsG0180000431.01.T01:CDS | 40.0% |
| ! | TTGGATTTGGTACCCTTTGT+TGG | - | Chr1:5919501-5919520 | MsG0180000431.01.T01:CDS | 40.0% |
| !! | CTGGTATAAGCATTGAATGG+TGG | - | Chr1:5919179-5919198 | MsG0180000431.01.T01:CDS | 40.0% |
| !! | TCTTGGATGGATTGGTTTCA+TGG | - | Chr1:5919706-5919725 | MsG0180000431.01.T01:CDS | 40.0% |
| !!! | CTTGCTAGTTTTTGTGTGAC+TGG | - | Chr1:5919565-5919584 | MsG0180000431.01.T01:CDS | 40.0% |
| !!! | GTTTTGGAGATGTTTGTACG+CGG | + | Chr1:5918828-5918847 | None:intergenic | 40.0% |
| !!! | TTTTAGGGTTGGCTCTGTTT+TGG | - | Chr1:5919482-5919501 | MsG0180000431.01.T01:CDS | 40.0% |
| AAAACCCTCTCACCCCAATT+AGG | + | Chr1:5919538-5919557 | None:intergenic | 45.0% | |
| AAATTACACCGTGGAAGACG+CGG | + | Chr1:5919766-5919785 | None:intergenic | 45.0% | |
| ATCCTGTGATGTGCTTTGCT+AGG | - | Chr1:5919389-5919408 | MsG0180000431.01.T01:CDS | 45.0% | |
| ATTTGTTTCCGCGTCTTCCA+CGG | - | Chr1:5919755-5919774 | MsG0180000431.01.T01:CDS | 45.0% | |
| CATCTCCAAAACTTTGCCAC+TGG | - | Chr1:5918836-5918855 | MsG0180000431.01.T01:CDS | 45.0% | |
| GATGCATGGATCTCCATTGA+CGG | - | Chr1:5918689-5918708 | MsG0180000431.01.T01:CDS | 45.0% | |
| GGAATGCATCAGTGACATCT+TGG | + | Chr1:5918787-5918806 | None:intergenic | 45.0% | |
| GTCTTCCACGGTGTAATTTG+AGG | - | Chr1:5919767-5919786 | MsG0180000431.01.T01:CDS | 45.0% | |
| GTGCTTTCGGGAGGATTAAT+GGG | - | Chr1:5919046-5919065 | MsG0180000431.01.T01:CDS | 45.0% | |
| GTTTACCTAATTGGGGTGAG+AGG | - | Chr1:5919530-5919549 | MsG0180000431.01.T01:CDS | 45.0% | |
| TCAAACCAATCATGAGCCGT+CGG | + | Chr1:5919649-5919668 | None:intergenic | 45.0% | |
| TGGTTTGAGAAGCAAGCTCA+TGG | - | Chr1:5919661-5919680 | MsG0180000431.01.T01:CDS | 45.0% | |
| TGTTTATGTTGGTCCACCGA+CGG | - | Chr1:5919630-5919649 | MsG0180000431.01.T01:CDS | 45.0% | |
| TTCTCCGAACTAACCAAGCT+GGG | - | Chr1:5918914-5918933 | MsG0180000431.01.T01:CDS | 45.0% | |
| TTTCTCCGAACTAACCAAGC+TGG | - | Chr1:5918913-5918932 | MsG0180000431.01.T01:CDS | 45.0% | |
| TTTGAGGAATGCAGCTTTGC+AGG | - | Chr1:5919885-5919904 | MsG0180000431.01.T01:CDS | 45.0% | |
| ! | AACTGCCAGTGGCAAAGTTT+TGG | + | Chr1:5918844-5918863 | None:intergenic | 45.0% |
| ! | CAAACCCAGCTTGGTTAGTT+CGG | + | Chr1:5918921-5918940 | None:intergenic | 45.0% |
| ! | CTGGGTTTGTTCGAAGAGAA+AGG | - | Chr1:5918932-5918951 | MsG0180000431.01.T01:CDS | 45.0% |
| ! | GCTTGGTTAGTTCGGAGAAA+AGG | + | Chr1:5918913-5918932 | None:intergenic | 45.0% |
| !! | GGTTGGATTGGTCATGATTC+TGG | - | Chr1:5919088-5919107 | MsG0180000431.01.T01:CDS | 45.0% |
| !! | TGGATGGATTGGTTTCATGG+TGG | - | Chr1:5919709-5919728 | MsG0180000431.01.T01:CDS | 45.0% |
| !!! | GGTTGGCTCTGTTTTGGATT+TGG | - | Chr1:5919488-5919507 | MsG0180000431.01.T01:CDS | 45.0% |
| AGATGTTTGTACGCGGATGG+AGG | + | Chr1:5918821-5918840 | None:intergenic | 50.0% | |
| AGCCTAGCAAAGCACATCAC+AGG | + | Chr1:5919394-5919413 | None:intergenic | 50.0% | |
| CGTGCTTTCGGGAGGATTAA+TGG | - | Chr1:5919045-5919064 | MsG0180000431.01.T01:CDS | 50.0% | |
| CTCTTCGAACAAACCCAGCT+TGG | + | Chr1:5918930-5918949 | None:intergenic | 50.0% | |
| GATGTTTGTACGCGGATGGA+GGG | + | Chr1:5918820-5918839 | None:intergenic | 50.0% | |
| GGCGAGGGATCTTACTAAAC+CGG | - | Chr1:5919906-5919925 | MsG0180000431.01.T01:CDS | 50.0% | |
| GTCGTAGATCTTGCCGTCAA+TGG | + | Chr1:5918705-5918724 | None:intergenic | 50.0% | |
| TGCATCAGTGACATCTTGGC+CGG | + | Chr1:5918783-5918802 | None:intergenic | 50.0% | |
| TGGAGATGTTTGTACGCGGA+TGG | + | Chr1:5918824-5918843 | None:intergenic | 50.0% | |
| AAATGGGCCAACCACCATCC+CGG | - | Chr1:5918731-5918750 | MsG0180000431.01.T01:CDS | 55.0% | |
| AACCAATCATGAGCCGTCGG+TGG | + | Chr1:5919646-5919665 | None:intergenic | 55.0% | |
| CAGAGACGACGTAGTCACGT+AGG | + | Chr1:5918868-5918887 | None:intergenic | 55.0% | |
| GAATGCAGCTTTGCAGGCGA+GGG | - | Chr1:5919891-5919910 | MsG0180000431.01.T01:CDS | 55.0% | |
| GTCACGTAGGTAACTGCCAG+TGG | + | Chr1:5918855-5918874 | None:intergenic | 55.0% | |
| ACAACACTCGCGGCGATGCA+TGG | - | Chr1:5918675-5918694 | MsG0180000431.01.T01:CDS | 60.0% | |
| CTTCCTCTCCTCAACCTCGC+CGG | - | Chr1:5918761-5918780 | MsG0180000431.01.T01:CDS | 60.0% | |
| GGAATGCAGCTTTGCAGGCG+AGG | - | Chr1:5919890-5919909 | MsG0180000431.01.T01:CDS | 60.0% | |
| GTCCACCGACGGCTCATGAT+TGG | - | Chr1:5919641-5919660 | MsG0180000431.01.T01:CDS | 60.0% | |
| GTTTGTACGCGGATGGAGGG+TGG | + | Chr1:5918817-5918836 | None:intergenic | 60.0% | |
| CAGTGACATCTTGGCCGGCG+AGG | + | Chr1:5918778-5918797 | None:intergenic | 65.0% | |
| CATCTTGGCCGGCGAGGTTG+AGG | + | Chr1:5918772-5918791 | None:intergenic | 65.0% | |
| CGCGGTCGTGCACGTGCTTT+CGG | - | Chr1:5919033-5919052 | MsG0180000431.01.T01:CDS | 65.0% | |
| CGGATGGAGGGTGGAAAGCG+AGG | + | Chr1:5918808-5918827 | None:intergenic | 65.0% | |
| GCGGTCGTGCACGTGCTTTC+GGG | - | Chr1:5919034-5919053 | MsG0180000431.01.T01:CDS | 65.0% | |
| GTCGTGCACGTGCTTTCGGG+AGG | - | Chr1:5919037-5919056 | MsG0180000431.01.T01:CDS | 65.0% | |
| AGGAGAGGAAGCTCGCCGCC+GGG | + | Chr1:5918752-5918771 | None:intergenic | 70.0% | |
| GAGGAGAGGAAGCTCGCCGC+CGG | + | Chr1:5918753-5918772 | None:intergenic | 70.0% | |
| TGGCCGGCGAGGTTGAGGAG+AGG | + | Chr1:5918767-5918786 | None:intergenic | 70.0% | |
| TGGGCCAACCACCATCCCGG+CGG | - | Chr1:5918734-5918753 | MsG0180000431.01.T01:CDS | 70.0% | |
| GAAGCTCGCCGCCGGGATGG+TGG | + | Chr1:5918745-5918764 | None:intergenic | 75.0% | |
| GAGGAAGCTCGCCGCCGGGA+TGG | + | Chr1:5918748-5918767 | None:intergenic | 75.0% | |
| ! | CTCGCCGCCGGGATGGTGGT+TGG | + | Chr1:5918741-5918760 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 5918611 | 5919972 | 5918611 | ID=MsG0180000431.01;Name=MsG0180000431.01 |
| Chr1 | mRNA | 5918611 | 5919972 | 5918611 | ID=MsG0180000431.01.T01;Parent=MsG0180000431.01;Name=MsG0180000431.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|453 |
| Chr1 | exon | 5918611 | 5919972 | 5918611 | ID=MsG0180000431.01.T01:exon:28080;Parent=MsG0180000431.01.T01 |
| Chr1 | CDS | 5918611 | 5919972 | 5918611 | ID=MsG0180000431.01.T01:cds;Parent=MsG0180000431.01.T01 |
| Gene Sequence |
| Protein sequence |
