AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016216.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016216.01.T01 MTR_3g085740 63.588 379 60 6 1 365 1 315 1.55e-147 420
MsG0380016216.01.T01 MTR_3g101040 85.714 49 7 0 1 49 1 49 3.33e-22 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016216.01.T01 AT1G24360 42.513 374 143 7 2 365 3 314 1.92e-79 246
MsG0380016216.01.T01 AT2G30670 47.297 74 36 2 294 365 176 248 8.34e-11 62.4

Find 93 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATATGGTACACTATTA+TGG 0.246388 3:+80571587 MsG0380016216.01.T01:five_prime_UTR
ATTATTGTTACAAGTGGTTT+TGG 0.259270 3:+80572864 MsG0380016216.01.T01:CDS
AATCATCTGCGTCCTGTTTC+CGG 0.282070 3:+80571913 MsG0380016216.01.T01:CDS
TGCTGGATTAGTGGAATTCT+TGG 0.283631 3:+80575339 MsG0380016216.01.T01:CDS
GGTTGAGTTAAACGAAATAT+TGG 0.295744 3:-80571950 None:intergenic
TCATCAGTTGTTGGTTTGAT+TGG 0.305542 3:+80574941 MsG0380016216.01.T01:CDS
TACAATCTTGTTTGAGTATG+AGG 0.306114 3:-80574405 None:intergenic
GCTGCAAAAGCAGGAGTAAT+TGG 0.309144 3:+80574989 MsG0380016216.01.T01:CDS
ACTCCTACAAGAAATCAAAA+TGG 0.314075 3:-80574682 None:intergenic
CTCAAGGTCATTTCCTAACT+TGG 0.314108 3:-80575180 None:intergenic
AAACAAGATTGTATGGTTAT+AGG 0.326554 3:+80574415 MsG0380016216.01.T01:CDS
ACAGCAATGGCTTCTCTTAC+CGG 0.335931 3:+80571802 MsG0380016216.01.T01:exon
GGAAACCTCTTCAGCTTCCT+TGG 0.347864 3:-80573028 None:intergenic
TCATTTCATTTCATTTCCTC+TGG 0.350340 3:+80571756 MsG0380016216.01.T01:five_prime_UTR
ACTAATCCAGCAACTTCTTC+TGG 0.371540 3:-80575328 None:intergenic
ACGTTGAATTTAGGACGATA+TGG 0.382624 3:+80575301 MsG0380016216.01.T01:intron
AATATTTCGTTTAACTCAAC+CGG 0.391775 3:+80571952 MsG0380016216.01.T01:CDS
AAAGCAATTGCGTTAGCGTT+AGG 0.392256 3:+80572163 MsG0380016216.01.T01:CDS
CAGGTTAATGCTGTTGCTCC+AGG 0.394323 3:+80575134 MsG0380016216.01.T01:intron
TTCCACTTTCTGAACTGCTT+CGG 0.396378 3:-80572098 None:intergenic
TCGCCGGTTGTGATTGTTAC+CGG 0.401377 3:+80572121 MsG0380016216.01.T01:CDS
ATCAATATTTCATCAGTTGT+TGG 0.404399 3:+80574932 MsG0380016216.01.T01:CDS
GAGTATGAGGGAAGATAGAA+AGG 0.409737 3:-80574392 None:intergenic
TTTGTAGGCAGTAGATGCTT+GGG 0.417671 3:+80574308 MsG0380016216.01.T01:intron
TCTGACATGACTGCCAAGTT+AGG 0.421559 3:+80575167 MsG0380016216.01.T01:CDS
TGCGTTAGCGTTAGGTAAGC+AGG 0.430933 3:+80572171 MsG0380016216.01.T01:CDS
GTTGGTTTGATTGGCAATGC+TGG 0.445619 3:+80574950 MsG0380016216.01.T01:CDS
CATACTCAAACAAGATTGTA+TGG 0.449816 3:+80574408 MsG0380016216.01.T01:CDS
AGAAGAAGTTGCTGGATTAG+TGG 0.457509 3:+80575330 MsG0380016216.01.T01:CDS
TCTCATCAATAAACCATCTC+TGG 0.460320 3:-80574443 None:intergenic
TCCGATACCTCTGGAAGCTC+CGG 0.461105 3:-80572140 None:intergenic
ATTTGTAGGCAGTAGATGCT+TGG 0.464311 3:+80574307 MsG0380016216.01.T01:intron
CTCCTACAAGAAATCAAAAT+GGG 0.474493 3:-80574681 None:intergenic
TATGTACCCTTTGTAGCATA+TGG 0.483390 3:+80571574 None:intergenic
AATTATGCTGCTGCAAAAGC+AGG 0.487568 3:+80574980 MsG0380016216.01.T01:CDS
CTAGTTTGAAGACCGGAAAC+AGG 0.488153 3:-80571925 None:intergenic
GGAACGGAGAGCGACGCAAT+TGG 0.488510 3:-80571827 None:intergenic
GGCCAACCAGAAGAAGTTGC+TGG 0.489361 3:+80575322 MsG0380016216.01.T01:CDS
CAAGCTGCCAGCTACATCAC+TGG 0.490614 3:+80575370 MsG0380016216.01.T01:CDS
CGTTGTGTTTGTTAGTACTT+TGG 0.494267 3:-80571699 None:intergenic
TGTTAGTACTTTGGAAGCTC+CGG 0.497080 3:-80571690 None:intergenic
GAAATGAAGAGAAGAGAGGA+TGG 0.509610 3:-80571740 None:intergenic
GGAAGCTGAAGAGGTTTCCA+AGG 0.510390 3:+80573032 MsG0380016216.01.T01:CDS
TTTCTCTTTCAAAACAGCAA+TGG 0.512327 3:+80571789 MsG0380016216.01.T01:exon
TTTGATATTATTGTTACAAG+TGG 0.517141 3:+80572858 MsG0380016216.01.T01:CDS
ATGTCAGATGCAATGAATCC+TGG 0.521848 3:-80575152 None:intergenic
GGTGGGCAAGCTCTAACATA+TGG 0.524116 3:+80574173 MsG0380016216.01.T01:CDS
ACCGGAGCTTCCAGAGGTAT+CGG 0.526611 3:+80572139 MsG0380016216.01.T01:CDS
GAGAGCGACGCAATTGGATC+CGG 0.528319 3:-80571821 None:intergenic
ATTGGATCTAGTTTGAAGAC+CGG 0.529069 3:-80571932 None:intergenic
ATCCAGCAACTTCTTCTGGT+TGG 0.533238 3:-80575324 None:intergenic
GGTTGCTACACTGGCGGACG+CGG 0.533600 3:+80572072 MsG0380016216.01.T01:CDS
GTTACCGGCGGCGGCAAAAG+TGG 0.536568 3:-80571851 None:intergenic
GATTATGATGAAGAATAAGA+AGG 0.545866 3:+80574632 MsG0380016216.01.T01:CDS
GTGAGAATGTTGTTATTGAG+TGG 0.546998 3:-80571664 None:intergenic
ACAATCTTGTTTGAGTATGA+GGG 0.557094 3:-80574404 None:intergenic
GCTCCGGTAACAATCACAAC+CGG 0.558097 3:-80572124 None:intergenic
GAGAGCACAGGTTGCTACAC+TGG 0.559959 3:+80572063 MsG0380016216.01.T01:CDS
GCCTGACAAAATCTGTTGCA+AGG 0.563266 3:+80575011 MsG0380016216.01.T01:CDS
TGCCAGCTACATCACTGGGC+AGG 0.563723 3:+80575375 MsG0380016216.01.T01:CDS
GATTGAGAAGTGGAGAGTAA+TGG 0.569836 3:-80571894 None:intergenic
ATTGTTTATCAATACATCAA+CGG 0.570986 3:-80574334 None:intergenic
ATCATCCAAGGAAGCTGAAG+AGG 0.573441 3:+80573023 MsG0380016216.01.T01:CDS
GTTATAGGAATAACCAGAGA+TGG 0.573576 3:+80574430 MsG0380016216.01.T01:CDS
CGGCGGCAAAAGTGGCGGAA+CGG 0.576146 3:-80571843 None:intergenic
TACAAGAAATCAAAATGGGA+AGG 0.576954 3:-80574677 None:intergenic
AGTATGAGGGAAGATAGAAA+GGG 0.581580 3:-80574391 None:intergenic
CGTTAGGTAAGCAGGTTGCA+AGG 0.581972 3:+80572179 MsG0380016216.01.T01:CDS
AACCGAAGCAGTTCAGAAAG+TGG 0.583413 3:+80572096 MsG0380016216.01.T01:CDS
GATGTATTGATAAACAATGC+CGG 0.584295 3:+80574339 MsG0380016216.01.T01:CDS
AAATGAAATGAAGAGAAGAG+AGG 0.590934 3:-80571744 None:intergenic
AGTTCAGAAAGTGGAATCGC+CGG 0.598878 3:+80572105 MsG0380016216.01.T01:CDS
TGTAGATTGAAGCACTCGGT+GGG 0.599744 3:+80574156 MsG0380016216.01.T01:intron
ACCGGCGGCGGCAAAAGTGG+CGG 0.604634 3:-80571848 None:intergenic
CAACTATGCAAGATCATCCA+AGG 0.609283 3:+80573011 MsG0380016216.01.T01:CDS
TCATTGCAAGGACTAAAAGA+CGG 0.610354 3:-80572902 None:intergenic
GGGCAAGCTCTAACATATGG+TGG 0.611395 3:+80574176 MsG0380016216.01.T01:CDS
ACGTGATGTGTAGTCTCAGT+AGG 0.613682 3:-80571633 None:intergenic
GGACGCAGATGATTGAGAAG+TGG 0.616684 3:-80571904 None:intergenic
GAGAAAATGGAAGAAGCCAG+AGG 0.621180 3:-80571772 None:intergenic
TTGTAGATTGAAGCACTCGG+TGG 0.621839 3:+80574155 MsG0380016216.01.T01:intron
AAGCTGCCAGCTACATCACT+GGG 0.623670 3:+80575371 MsG0380016216.01.T01:CDS
TGCAAGGAATATTCTAGCAG+AGG 0.642151 3:+80575027 MsG0380016216.01.T01:CDS
TTGTAGGCAGTAGATGCTTG+GGG 0.648579 3:+80574309 MsG0380016216.01.T01:intron
ATAACAACATTCTCACACTC+CGG 0.650450 3:+80571671 MsG0380016216.01.T01:five_prime_UTR
ATTGTTACCGGAGCTTCCAG+AGG 0.650765 3:+80572133 MsG0380016216.01.T01:CDS
GAATGTTGTTATTGAGTGGA+CGG 0.655046 3:-80571660 None:intergenic
TGAGCTGTGAAGCTTAGCAA+TGG 0.656875 3:-80571610 None:intergenic
TGAGAAGTGGAGAGTAATGG+CGG 0.660025 3:-80571891 None:intergenic
AGCTGAAGAGGTTTCCAAGG+AGG 0.661491 3:+80573035 MsG0380016216.01.T01:CDS
AGCACAGGTTGCTACACTGG+CGG 0.662783 3:+80572066 MsG0380016216.01.T01:CDS
TATTTGTAGATTGAAGCACT+CGG 0.665627 3:+80574152 MsG0380016216.01.T01:intron
GACCTGCCCAGTGATGTAGC+TGG 0.695510 3:-80575377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAGAATCAAACTT+TGG - Chr3:80574823-80574842 None:intergenic 15.0%
!! AAGCACAATATTAAAAATTA+TGG - Chr3:80573985-80574004 None:intergenic 15.0%
!! ACATTACATATTAAAAGTAA+CGG - Chr3:80573234-80573253 None:intergenic 15.0%
!! TGGATGAAATTAATAAATAA+GGG - Chr3:80573791-80573810 None:intergenic 15.0%
!! TTGGATGAAATTAATAAATA+AGG - Chr3:80573792-80573811 None:intergenic 15.0%
!! AATATCTAAAGAATATCTTG+CGG + Chr3:80572502-80572521 MsG0380016216.01.T01:intron 20.0%
!! ATTGTTTATCAATACATCAA+CGG - Chr3:80574337-80574356 None:intergenic 20.0%
!! ATTTAACAATTGACAATATC+AGG - Chr3:80575088-80575107 None:intergenic 20.0%
!! CATAAAAACAGAAACATTAA+TGG - Chr3:80573111-80573130 None:intergenic 20.0%
!! CATATCAGATTAAAAGAAAA+GGG - Chr3:80574579-80574598 None:intergenic 20.0%
!! CTAAAACTATAATATTGTTG+AGG - Chr3:80573378-80573397 None:intergenic 20.0%
!! TATAAGTCTACCAAATATTT+GGG - Chr3:80573327-80573346 None:intergenic 20.0%
!! TCATATCAGATTAAAAGAAA+AGG - Chr3:80574580-80574599 None:intergenic 20.0%
!! TCTTATTAATTGTTAGTTAG+TGG - Chr3:80573825-80573844 None:intergenic 20.0%
!! TTAACAACATCTTCAAATTA+CGG - Chr3:80575261-80575280 None:intergenic 20.0%
!! TTATAAGTCTACCAAATATT+TGG - Chr3:80573328-80573347 None:intergenic 20.0%
!! TTTAGTATAAACTTTAACCA+TGG - Chr3:80573151-80573170 None:intergenic 20.0%
!! TTTGATATTATTGTTACAAG+TGG + Chr3:80572858-80572877 MsG0380016216.01.T01:CDS 20.0%
!!! TCAACATTCATGTTATTTTT+TGG + Chr3:80572246-80572265 MsG0380016216.01.T01:intron 20.0%
!!! TGATTAATTGTTGATTTCAA+TGG - Chr3:80573875-80573894 None:intergenic 20.0%
! AAAAGTAGATACTCTACTTT+AGG - Chr3:80574877-80574896 None:intergenic 25.0%
! AAACAAGATTGTATGGTTAT+AGG + Chr3:80574415-80574434 MsG0380016216.01.T01:CDS 25.0%
! AATATTTCGTTTAACTCAAC+CGG + Chr3:80571952-80571971 MsG0380016216.01.T01:CDS 25.0%
! AATTCTTATTGTTCCTAGAT+AGG - Chr3:80574796-80574815 None:intergenic 25.0%
! ATAAGTCTACCAAATATTTG+GGG - Chr3:80573326-80573345 None:intergenic 25.0%
! ATAATCACACATATTTCAGA+AGG - Chr3:80573071-80573090 None:intergenic 25.0%
! ATCAATATTTCATCAGTTGT+TGG + Chr3:80574932-80574951 MsG0380016216.01.T01:CDS 25.0%
! ATTTGGTAGACTTATAAAGT+TGG + Chr3:80573331-80573350 MsG0380016216.01.T01:intron 25.0%
! CACAATTAATGTTAATGACT+TGG + Chr3:80573641-80573660 MsG0380016216.01.T01:intron 25.0%
! CATTATCAGTTTATGTCTAA+CGG - Chr3:80572219-80572238 None:intergenic 25.0%
! GATTATGATGAAGAATAAGA+AGG + Chr3:80574632-80574651 MsG0380016216.01.T01:CDS 25.0%
! GGAATAATTAATGACTTGAA+CGG - Chr3:80574727-80574746 None:intergenic 25.0%
! GTCATTAATTATTCCTAAAG+TGG + Chr3:80574732-80574751 MsG0380016216.01.T01:intron 25.0%
! TATTTCTTGCATTTACCTAA+TGG - Chr3:80575227-80575246 None:intergenic 25.0%
! TTGAGAAAAAATTCCACTTT+AGG - Chr3:80574748-80574767 None:intergenic 25.0%
! TTTATGACTTTCACATTTGT+AGG + Chr3:80574293-80574312 MsG0380016216.01.T01:intron 25.0%
!! AATAAATAAGGGCATAATAG+TGG - Chr3:80573780-80573799 None:intergenic 25.0%
!! ATACTCTACTTTAGGAATAA+AGG - Chr3:80574869-80574888 None:intergenic 25.0%
!! ATTATTGTTACAAGTGGTTT+TGG + Chr3:80572864-80572883 MsG0380016216.01.T01:CDS 25.0%
!! TACATGCACTTAATATTTTC+AGG + Chr3:80572981-80573000 MsG0380016216.01.T01:intron 25.0%
!! TTTTATCAATTTCACCTCAA+TGG - Chr3:80573616-80573635 None:intergenic 25.0%
!! TTTTATGCCAATCTAATATC+AGG + Chr3:80573124-80573143 MsG0380016216.01.T01:intron 25.0%
!!! AAACGACTATTATTTTGAGA+TGG + Chr3:80573921-80573940 MsG0380016216.01.T01:intron 25.0%
!!! AAGAGACAATTATTTTGAGA+CGG - Chr3:80573692-80573711 None:intergenic 25.0%
!!! AGACTGTTAATTTTTTTTGC+AGG + Chr3:80574599-80574618 MsG0380016216.01.T01:intron 25.0%
!!! ATTCTATGATTTTTTTAGCC+AGG + Chr3:80573544-80573563 MsG0380016216.01.T01:intron 25.0%
!!! ATTTTTTGCACGTTGAATTT+AGG + Chr3:80575292-80575311 MsG0380016216.01.T01:intron 25.0%
!!! CACTTAATATTTTCAGGTTT+TGG + Chr3:80572987-80573006 MsG0380016216.01.T01:intron 25.0%
!!! TAAATCAACCAGAACTTTTT+TGG - Chr3:80572700-80572719 None:intergenic 25.0%
!!! TTCTATGATTTTTTTAGCCA+GGG + Chr3:80573545-80573564 MsG0380016216.01.T01:intron 25.0%
AAATGAAATGAAGAGAAGAG+AGG - Chr3:80571747-80571766 None:intergenic 30.0%
AAGTTTGTGCACGATATTTA+AGG - Chr3:80573901-80573920 None:intergenic 30.0%
ACAAGTTACATAAATTGCGA+TGG - Chr3:80572372-80572391 None:intergenic 30.0%
ACTCCTACAAGAAATCAAAA+TGG - Chr3:80574685-80574704 None:intergenic 30.0%
AGATTTCTAACAAGATTACC+AGG - Chr3:80572541-80572560 None:intergenic 30.0%
ATGTTATATTGATGCATGCT+TGG + Chr3:80574036-80574055 MsG0380016216.01.T01:intron 30.0%
CAATAGTTAGAATTCCTTGT+AGG + Chr3:80572604-80572623 MsG0380016216.01.T01:intron 30.0%
CATACTCAAACAAGATTGTA+TGG + Chr3:80574408-80574427 MsG0380016216.01.T01:CDS 30.0%
CGTGCAAAAAATAAGTTAAG+CGG - Chr3:80575284-80575303 None:intergenic 30.0%
CTCCTACAAGAAATCAAAAT+GGG - Chr3:80574684-80574703 None:intergenic 30.0%
CTTCATTTCCAAAAAAGTTC+TGG + Chr3:80572689-80572708 MsG0380016216.01.T01:intron 30.0%
GGTTGAGTTAAACGAAATAT+TGG - Chr3:80571953-80571972 None:intergenic 30.0%
GTTATTGATCTAAATCTCAC+TGG + Chr3:80574490-80574509 MsG0380016216.01.T01:intron 30.0%
TACAAGAAATCAAAATGGGA+AGG - Chr3:80574680-80574699 None:intergenic 30.0%
TAGCATATGGTACACTATTA+TGG + Chr3:80571587-80571606 MsG0380016216.01.T01:five_prime_UTR 30.0%
TCATAGAATGATCAACATCT+TGG - Chr3:80573533-80573552 None:intergenic 30.0%
TCATTTCATTTCATTTCCTC+TGG + Chr3:80571756-80571775 MsG0380016216.01.T01:five_prime_UTR 30.0%
TTGTTCTTTCTTTACCATTG+AGG + Chr3:80573599-80573618 MsG0380016216.01.T01:intron 30.0%
TTTCTCAACAAATCCTATCT+AGG + Chr3:80574780-80574799 MsG0380016216.01.T01:intron 30.0%
TTTCTCTTTCAAAACAGCAA+TGG + Chr3:80571789-80571808 MsG0380016216.01.T01:exon 30.0%
! ACAACTTTGATTTCATTGCA+AGG - Chr3:80572917-80572936 None:intergenic 30.0%
! ACAAGATCTTTTCAACTTAC+CGG - Chr3:80574361-80574380 None:intergenic 30.0%
! ACAATCTTGTTTGAGTATGA+GGG - Chr3:80574407-80574426 None:intergenic 30.0%
! GATGTATTGATAAACAATGC+CGG + Chr3:80574339-80574358 MsG0380016216.01.T01:CDS 30.0%
! TACAATCTTGTTTGAGTATG+AGG - Chr3:80574408-80574427 None:intergenic 30.0%
! TATTTGTAGATTGAAGCACT+CGG + Chr3:80574152-80574171 MsG0380016216.01.T01:intron 30.0%
! TGACCTTGAGAAAAAGATTT+TGG + Chr3:80575193-80575212 MsG0380016216.01.T01:CDS 30.0%
! TGCTGTAAATGTAATGCTTT+TGG + Chr3:80572943-80572962 MsG0380016216.01.T01:intron 30.0%
!! AGAGTATCTACTTTTAAACG+TGG + Chr3:80574882-80574901 MsG0380016216.01.T01:intron 30.0%
!! AGGATTTGTTGAGAAATTAG+AGG - Chr3:80574776-80574795 None:intergenic 30.0%
!!! CAGAACTTTTTTGGAAATGA+AGG - Chr3:80572691-80572710 None:intergenic 30.0%
!!! CTGTTAATTTTTTTTGCAGG+CGG + Chr3:80574602-80574621 MsG0380016216.01.T01:intron 30.0%
!!! GACTATTATTTTGAGATGGA+GGG + Chr3:80573925-80573944 MsG0380016216.01.T01:intron 30.0%
!!! TGCTGTTTTGAAAGAGAAAA+TGG - Chr3:80571788-80571807 None:intergenic 30.0%
!!! TGGATGCTTGTATTTTTTCA+GGG + Chr3:80574902-80574921 MsG0380016216.01.T01:intron 30.0%
!!! TTCCCATTTTGATTTCTTGT+AGG + Chr3:80574679-80574698 MsG0380016216.01.T01:intron 30.0%
AGTATGAGGGAAGATAGAAA+GGG - Chr3:80574394-80574413 None:intergenic 35.0%
ATAACAACATTCTCACACTC+CGG + Chr3:80571671-80571690 MsG0380016216.01.T01:five_prime_UTR 35.0%
ATTAACCTGGCAAGAAAAAC+AGG - Chr3:80575123-80575142 None:intergenic 35.0%
CAATTCTGACAGAAATTTGG+GGG - Chr3:80572583-80572602 None:intergenic 35.0%
CCAATTCTGACAGAAATTTG+GGG - Chr3:80572584-80572603 None:intergenic 35.0%
CTTCAAAATATTCACCTGTG+TGG - Chr3:80574528-80574547 None:intergenic 35.0%
GCCAATTCTGACAGAAATTT+GGG - Chr3:80572585-80572604 None:intergenic 35.0%
GTTATAGGAATAACCAGAGA+TGG + Chr3:80574430-80574449 MsG0380016216.01.T01:CDS 35.0%
TCATTGCAAGGACTAAAAGA+CGG - Chr3:80572905-80572924 None:intergenic 35.0%
TCTCATCAATAAACCATCTC+TGG - Chr3:80574446-80574465 None:intergenic 35.0%
TGAAAGTCATAAAGCAGCAA+AGG - Chr3:80574286-80574305 None:intergenic 35.0%
TGCCAATTCTGACAGAAATT+TGG - Chr3:80572586-80572605 None:intergenic 35.0%
TGCGGTAATAATGAAATTCC+TGG + Chr3:80572520-80572539 MsG0380016216.01.T01:intron 35.0%
TGGTAGACTTATAAAGTTGG+TGG + Chr3:80573334-80573353 MsG0380016216.01.T01:intron 35.0%
TTAACCTGGCAAGAAAAACA+GGG - Chr3:80575122-80575141 None:intergenic 35.0%
TTCATTCTGCCCCAAATATT+TGG + Chr3:80573314-80573333 MsG0380016216.01.T01:intron 35.0%
TTCTTGTAGGAGTCCTATTT+AGG + Chr3:80574692-80574711 MsG0380016216.01.T01:intron 35.0%
! ACGTTGAATTTAGGACGATA+TGG + Chr3:80575301-80575320 MsG0380016216.01.T01:intron 35.0%
! ATTGGATCTAGTTTGAAGAC+CGG - Chr3:80571935-80571954 None:intergenic 35.0%
! CCTCCAAAATCTTTTTCTCA+AGG - Chr3:80575199-80575218 None:intergenic 35.0%
! CCTTGAGAAAAAGATTTTGG+AGG + Chr3:80575196-80575215 MsG0380016216.01.T01:CDS 35.0%
! CGTTGTGTTTGTTAGTACTT+TGG - Chr3:80571702-80571721 None:intergenic 35.0%
! GAAGAATTGAAGAAGAGTAC+CGG - Chr3:80571974-80571993 None:intergenic 35.0%
! GAATGTTGTTATTGAGTGGA+CGG - Chr3:80571663-80571682 None:intergenic 35.0%
! GTGAGAATGTTGTTATTGAG+TGG - Chr3:80571667-80571686 None:intergenic 35.0%
!! ATTTTGGAGGCAATTCCATT+AGG + Chr3:80575209-80575228 MsG0380016216.01.T01:CDS 35.0%
!! GTAACTTGTTCATGAATCAC+TGG + Chr3:80572383-80572402 MsG0380016216.01.T01:intron 35.0%
!! TCATCAGTTGTTGGTTTGAT+TGG + Chr3:80574941-80574960 MsG0380016216.01.T01:CDS 35.0%
!!! AGACAATTATTTTGAGACGG+AGG - Chr3:80573689-80573708 None:intergenic 35.0%
!!! ATTTTTTTAGCCAGGGTTCA+TGG + Chr3:80573552-80573571 MsG0380016216.01.T01:intron 35.0%
!!! CGACTATTATTTTGAGATGG+AGG + Chr3:80573924-80573943 MsG0380016216.01.T01:intron 35.0%
!!! GACAATTATTTTGAGACGGA+GGG - Chr3:80573688-80573707 None:intergenic 35.0%
!!! GTGGATGCTTGTATTTTTTC+AGG + Chr3:80574901-80574920 MsG0380016216.01.T01:intron 35.0%
!!! TGCTTGTATTTTTTCAGGGA+AGG + Chr3:80574906-80574925 MsG0380016216.01.T01:intron 35.0%
AAAGCAATTGCGTTAGCGTT+AGG + Chr3:80572163-80572182 MsG0380016216.01.T01:CDS 40.0%
AAATAGAAGACCATGAACCC+TGG - Chr3:80573565-80573584 None:intergenic 40.0%
AATTATGCTGCTGCAAAAGC+AGG + Chr3:80574980-80574999 MsG0380016216.01.T01:CDS 40.0%
ACGGTCCATTGTTCCTAAAT+AGG - Chr3:80574708-80574727 None:intergenic 40.0%
ACTAATCCAGCAACTTCTTC+TGG - Chr3:80575331-80575350 None:intergenic 40.0%
AGAATGATCAACATCTTGGC+TGG - Chr3:80573529-80573548 None:intergenic 40.0%
AGTTAGTGGAGTAGTCAAGT+TGG - Chr3:80573811-80573830 None:intergenic 40.0%
ATGTCAGATGCAATGAATCC+TGG - Chr3:80575155-80575174 None:intergenic 40.0%
ATTTGTAGGCAGTAGATGCT+TGG + Chr3:80574307-80574326 MsG0380016216.01.T01:intron 40.0%
CAACTATGCAAGATCATCCA+AGG + Chr3:80573011-80573030 MsG0380016216.01.T01:CDS 40.0%
CCAATCTAATATCAGGACCA+TGG + Chr3:80573131-80573150 MsG0380016216.01.T01:intron 40.0%
CCATGGTCCTGATATTAGAT+TGG - Chr3:80573134-80573153 None:intergenic 40.0%
CCCCAAATTTCTGTCAGAAT+TGG + Chr3:80572581-80572600 MsG0380016216.01.T01:intron 40.0%
CTCAAGGTCATTTCCTAACT+TGG - Chr3:80575183-80575202 None:intergenic 40.0%
GAAATGAAGAGAAGAGAGGA+TGG - Chr3:80571743-80571762 None:intergenic 40.0%
GAATGATCAACATCTTGGCT+GGG - Chr3:80573528-80573547 None:intergenic 40.0%
GAGTATGAGGGAAGATAGAA+AGG - Chr3:80574395-80574414 None:intergenic 40.0%
GATTGAGAAGTGGAGAGTAA+TGG - Chr3:80571897-80571916 None:intergenic 40.0%
GCGAGTTAAAAAATGTGCGT+TGG + Chr3:80572416-80572435 MsG0380016216.01.T01:intron 40.0%
GGAGTCCTATTTAGGAACAA+TGG + Chr3:80574700-80574719 MsG0380016216.01.T01:intron 40.0%
TGAGAATGAAGAAGTCTCAG+TGG + Chr3:80574461-80574480 MsG0380016216.01.T01:intron 40.0%
TGCAAGGAATATTCTAGCAG+AGG + Chr3:80575027-80575046 MsG0380016216.01.T01:CDS 40.0%
TTCCACTTTCTGAACTGCTT+CGG - Chr3:80572101-80572120 None:intergenic 40.0%
TTTGTAGGCAGTAGATGCTT+GGG + Chr3:80574308-80574327 MsG0380016216.01.T01:intron 40.0%
! AGAAGAAGTTGCTGGATTAG+TGG + Chr3:80575330-80575349 MsG0380016216.01.T01:CDS 40.0%
! CTGAGTGATTTTACGGTTAC+CGG - Chr3:80571869-80571888 None:intergenic 40.0%
! TCCTTGCAACAGATTTTGTC+AGG - Chr3:80575015-80575034 None:intergenic 40.0%
! TGCTTTTGCAGCAGCATAAT+TGG - Chr3:80574981-80575000 None:intergenic 40.0%
! TGCTTTTGGATCCTGATGTT+CGG + Chr3:80572957-80572976 MsG0380016216.01.T01:intron 40.0%
! TGTTAGTACTTTGGAAGCTC+CGG - Chr3:80571693-80571712 None:intergenic 40.0%
! TTTACAGCAGTAGTTCTGTG+TGG + Chr3:80574003-80574022 MsG0380016216.01.T01:intron 40.0%
! TTTTCCTCTTCATACGTAGC+AGG + Chr3:80572344-80572363 MsG0380016216.01.T01:intron 40.0%
!! AAAACCCTGTTTTTCTTGCC+AGG + Chr3:80575115-80575134 MsG0380016216.01.T01:intron 40.0%
!! AATTGCTTTTCCGATACCTC+TGG - Chr3:80572152-80572171 None:intergenic 40.0%
!! TGCTGGATTAGTGGAATTCT+TGG + Chr3:80575339-80575358 MsG0380016216.01.T01:CDS 40.0%
!!! GGTGTTTTTTCTTTCCACAC+AGG + Chr3:80574511-80574530 MsG0380016216.01.T01:intron 40.0%
AACCGAAGCAGTTCAGAAAG+TGG + Chr3:80572096-80572115 MsG0380016216.01.T01:CDS 45.0%
AATCATCTGCGTCCTGTTTC+CGG + Chr3:80571913-80571932 MsG0380016216.01.T01:CDS 45.0%
AATGAAGAAGTCTCAGTGGC+AGG + Chr3:80574465-80574484 MsG0380016216.01.T01:intron 45.0%
ACAGCAATGGCTTCTCTTAC+CGG + Chr3:80571802-80571821 MsG0380016216.01.T01:exon 45.0%
ACGTGATGTGTAGTCTCAGT+AGG - Chr3:80571636-80571655 None:intergenic 45.0%
ACTTGACACTCCTTGTTCCT+GGG - Chr3:80573429-80573448 None:intergenic 45.0%
AGGAGAGCTACAAACCTACA+AGG - Chr3:80572621-80572640 None:intergenic 45.0%
AGTGCATGTAACCGAACATC+AGG - Chr3:80572971-80572990 None:intergenic 45.0%
AGTTCAGAAAGTGGAATCGC+CGG + Chr3:80572105-80572124 MsG0380016216.01.T01:CDS 45.0%
ATCATCCAAGGAAGCTGAAG+AGG + Chr3:80573023-80573042 MsG0380016216.01.T01:CDS 45.0%
ATCCAGCAACTTCTTCTGGT+TGG - Chr3:80575327-80575346 None:intergenic 45.0%
CTAGTTTGAAGACCGGAAAC+AGG - Chr3:80571928-80571947 None:intergenic 45.0%
GAGAAAATGGAAGAAGCCAG+AGG - Chr3:80571775-80571794 None:intergenic 45.0%
GCCTGACAAAATCTGTTGCA+AGG + Chr3:80575011-80575030 MsG0380016216.01.T01:CDS 45.0%
GCTGCAAAAGCAGGAGTAAT+TGG + Chr3:80574989-80575008 MsG0380016216.01.T01:CDS 45.0%
GTAGGTTTGTAGCTCTCCTT+AGG + Chr3:80572622-80572641 MsG0380016216.01.T01:intron 45.0%
TCTGACATGACTGCCAAGTT+AGG + Chr3:80575167-80575186 MsG0380016216.01.T01:CDS 45.0%
TGACAACCAAACTGAGCCTA+AGG - Chr3:80572641-80572660 None:intergenic 45.0%
TGAGAAGTGGAGAGTAATGG+CGG - Chr3:80571894-80571913 None:intergenic 45.0%
TGAGCTGTGAAGCTTAGCAA+TGG - Chr3:80571613-80571632 None:intergenic 45.0%
TTGTAGGCAGTAGATGCTTG+GGG + Chr3:80574309-80574328 MsG0380016216.01.T01:intron 45.0%
! AAGGCAGTTTTCTACCTCCT+TGG - Chr3:80573052-80573071 None:intergenic 45.0%
! AGTGATTTTACGGTTACCGG+CGG - Chr3:80571866-80571885 None:intergenic 45.0%
! GGCGGATCTGAGTGATTTTA+CGG - Chr3:80571876-80571895 None:intergenic 45.0%
! TGTAGATTGAAGCACTCGGT+GGG + Chr3:80574156-80574175 MsG0380016216.01.T01:intron 45.0%
! TTGTAGATTGAAGCACTCGG+TGG + Chr3:80574155-80574174 MsG0380016216.01.T01:intron 45.0%
!! GTTGGTTTGATTGGCAATGC+TGG + Chr3:80574950-80574969 MsG0380016216.01.T01:CDS 45.0%
AAGCTGCCAGCTACATCACT+GGG + Chr3:80575371-80575390 MsG0380016216.01.T01:CDS 50.0%
AGCTCTCCTTAGGCTCAGTT+TGG + Chr3:80572632-80572651 MsG0380016216.01.T01:intron 50.0%
AGCTGAAGAGGTTTCCAAGG+AGG + Chr3:80573035-80573054 MsG0380016216.01.T01:CDS 50.0%
ATTGTTACCGGAGCTTCCAG+AGG + Chr3:80572133-80572152 MsG0380016216.01.T01:CDS 50.0%
CAACATCTTGGCTGGGAATC+AGG - Chr3:80573521-80573540 None:intergenic 50.0%
CACTTGACACTCCTTGTTCC+TGG - Chr3:80573430-80573449 None:intergenic 50.0%
CAGGTTAATGCTGTTGCTCC+AGG + Chr3:80575134-80575153 MsG0380016216.01.T01:intron 50.0%
CGTTAGGTAAGCAGGTTGCA+AGG + Chr3:80572179-80572198 MsG0380016216.01.T01:CDS 50.0%
CTGGAGCAACAGCATTAACC+TGG - Chr3:80575136-80575155 None:intergenic 50.0%
CTTGACACTCCTTGTTCCTG+GGG - Chr3:80573428-80573447 None:intergenic 50.0%
GCTCCGGTAACAATCACAAC+CGG - Chr3:80572127-80572146 None:intergenic 50.0%
GGAAACCTCTTCAGCTTCCT+TGG - Chr3:80573031-80573050 None:intergenic 50.0%
GGAAGCTGAAGAGGTTTCCA+AGG + Chr3:80573032-80573051 MsG0380016216.01.T01:CDS 50.0%
GGACGCAGATGATTGAGAAG+TGG - Chr3:80571907-80571926 None:intergenic 50.0%
TGCGTTAGCGTTAGGTAAGC+AGG + Chr3:80572171-80572190 MsG0380016216.01.T01:CDS 50.0%
TTGACACTCCTTGTTCCTGG+GGG - Chr3:80573427-80573446 None:intergenic 50.0%
! AAGTTTTCCCCCCAGGAACA+AGG + Chr3:80573416-80573435 MsG0380016216.01.T01:intron 50.0%
! ATTCGAGAACGCGCGTTTTC+AGG + Chr3:80572037-80572056 MsG0380016216.01.T01:intron 50.0%
! CTTCGATAAGTTTTCCCCCC+AGG + Chr3:80573409-80573428 MsG0380016216.01.T01:intron 50.0%
! GGGCAAGCTCTAACATATGG+TGG + Chr3:80574176-80574195 MsG0380016216.01.T01:CDS 50.0%
! GGTGGGCAAGCTCTAACATA+TGG + Chr3:80574173-80574192 MsG0380016216.01.T01:CDS 50.0%
! TCGCCGGTTGTGATTGTTAC+CGG + Chr3:80572121-80572140 MsG0380016216.01.T01:CDS 50.0%
!!! GTTTTCAGGTGTGAGAGCAC+AGG + Chr3:80572051-80572070 MsG0380016216.01.T01:intron 50.0%
AGCACAGGTTGCTACACTGG+CGG + Chr3:80572066-80572085 MsG0380016216.01.T01:CDS 55.0%
CAAGCTGCCAGCTACATCAC+TGG + Chr3:80575370-80575389 MsG0380016216.01.T01:CDS 55.0%
GAAGAAGTCTCAGTGGCAGG+AGG + Chr3:80574468-80574487 MsG0380016216.01.T01:intron 55.0%
GAGAGCGACGCAATTGGATC+CGG - Chr3:80571824-80571843 None:intergenic 55.0%
GGAGCCTGCTACGTATGAAG+AGG - Chr3:80572351-80572370 None:intergenic 55.0%
GGCCAACCAGAAGAAGTTGC+TGG + Chr3:80575322-80575341 MsG0380016216.01.T01:CDS 55.0%
TGACACTCCTTGTTCCTGGG+GGG - Chr3:80573426-80573445 None:intergenic 55.0%
! ACCGGAGCTTCCAGAGGTAT+CGG + Chr3:80572139-80572158 MsG0380016216.01.T01:CDS 55.0%
! GAGAGCACAGGTTGCTACAC+TGG + Chr3:80572063-80572082 MsG0380016216.01.T01:CDS 55.0%
! GATTTTACGGTTACCGGCGG+CGG - Chr3:80571863-80571882 None:intergenic 55.0%
! TCCGATACCTCTGGAAGCTC+CGG - Chr3:80572143-80572162 None:intergenic 55.0%
GACCTGCCCAGTGATGTAGC+TGG - Chr3:80575380-80575399 None:intergenic 60.0%
GGAACGGAGAGCGACGCAAT+TGG - Chr3:80571830-80571849 None:intergenic 60.0%
TGCCAGCTACATCACTGGGC+AGG + Chr3:80575375-80575394 MsG0380016216.01.T01:CDS 60.0%
GTTACCGGCGGCGGCAAAAG+TGG - Chr3:80571854-80571873 None:intergenic 65.0%
! CGGCGGCAAAAGTGGCGGAA+CGG - Chr3:80571846-80571865 None:intergenic 65.0%
! GGTTGCTACACTGGCGGACG+CGG + Chr3:80572072-80572091 MsG0380016216.01.T01:CDS 65.0%
ACCGGCGGCGGCAAAAGTGG+CGG - Chr3:80571851-80571870 None:intergenic 70.0%
!!! TCCGCCACTTTTGCCGCCGC+CGG + Chr3:80571847-80571866 MsG0380016216.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80571586 80575414 80571586 ID=MsG0380016216.01;Name=MsG0380016216.01
Chr3 mRNA 80571586 80575414 80571586 ID=MsG0380016216.01.T01;Parent=MsG0380016216.01;Name=MsG0380016216.01.T01;_AED=0.44;_eAED=0.54;_QI=222|0.55|0.5|1|0.55|0.6|10|0|365
Chr3 exon 80571586 80571973 80571586 ID=MsG0380016216.01.T01:exon:32821;Parent=MsG0380016216.01.T01
Chr3 exon 80572059 80572217 80572059 ID=MsG0380016216.01.T01:exon:32822;Parent=MsG0380016216.01.T01
Chr3 exon 80572844 80572911 80572844 ID=MsG0380016216.01.T01:exon:32823;Parent=MsG0380016216.01.T01
Chr3 exon 80573003 80573056 80573003 ID=MsG0380016216.01.T01:exon:32824;Parent=MsG0380016216.01.T01
Chr3 exon 80574161 80574241 80574161 ID=MsG0380016216.01.T01:exon:32825;Parent=MsG0380016216.01.T01
Chr3 exon 80574315 80574479 80574315 ID=MsG0380016216.01.T01:exon:32826;Parent=MsG0380016216.01.T01
Chr3 exon 80574621 80574696 80574621 ID=MsG0380016216.01.T01:exon:32827;Parent=MsG0380016216.01.T01
Chr3 exon 80574923 80575056 80574923 ID=MsG0380016216.01.T01:exon:32828;Parent=MsG0380016216.01.T01
Chr3 exon 80575137 80575230 80575137 ID=MsG0380016216.01.T01:exon:32829;Parent=MsG0380016216.01.T01
Chr3 exon 80575314 80575414 80575314 ID=MsG0380016216.01.T01:exon:32830;Parent=MsG0380016216.01.T01
Chr3 five_prime_UTR 80571586 80571807 80571586 ID=MsG0380016216.01.T01:five_prime_utr;Parent=MsG0380016216.01.T01
Chr3 CDS 80571808 80571973 80571808 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80572059 80572217 80572059 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80572844 80572911 80572844 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80573003 80573056 80573003 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80574161 80574241 80574161 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80574315 80574479 80574315 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80574621 80574696 80574621 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80574923 80575056 80574923 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80575137 80575230 80575137 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Chr3 CDS 80575314 80575414 80575314 ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01
Gene Sequence

>MsG0380016216.01.T01

ATGGCTTCTCTTACCGGATCCAATTGCGTCGCTCTCCGTTCCGCCACTTTTGCCGCCGCCGGTAACCGTAAAATCACTCAGATCCGCCATTACTCTCCACTTCTCAATCATCTGCGTCCTGTTTCCGGTCTTCAAACTAGATCCAATATTTCGTTTAACTCAACCGGTGTGAGAGCACAGGTTGCTACACTGGCGGACGCGGCAACCGAAGCAGTTCAGAAAGTGGAATCGCCGGTTGTGATTGTTACCGGAGCTTCCAGAGGTATCGGAAAAGCAATTGCGTTAGCGTTAGGTAAGCAGGTTGCAAGGTTAGTTGTTGAAAACCTTTTTACAAAATTCTTTGATATTATTGTTACAAGTGGTTTTGGAGAAATTTTTCAAATCCGTCTTTTAGTTTTGGTCAACTATGCAAGATCATCCAAGGAAGCTGAAGAGGTTTCCAAGGAGATTGAAGCACTCGGTGGGCAAGCTCTAACATATGGTGGAGATGTTTCTAATGAAGCTGATGTGAACTCTATGATTAAAACTGCAGTAGATGCTTGGGGAACCGTTGATGTATTGATAAACAATGCCGGTAAGTTGAAAAGATCTTGTGATTGTGCTACCCTTTCTATCTTCCCTCATACTCAAACAAGATTGTATGGTTATAGGAATAACCAGAGATGGTTTATTGATGAGAATGAAGAAGTCTCAGCGGCTGCTAAGATTATGATGAAGAATAAGAAGGTGACAACAATTTATTCATTTATCCTTCCCATTTTGATTTCTTGGAAGGATAATCAATATTTCATCAGTTGTTGGTTTGATTGGCAATGCTGGACAAGCCAATTATGCTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAATCTGTTGCAAGGAATATTCTAGCAGAGGCATCACTGTTAATGCTGTTGCTCCAGGATTCATTGCATCTGACATGACTGCCAAGTTAGGAAATGACCTTGAGAAAAAGATTTTGGAGGCAATTCCATTAGGACGATATGGCCAACCAGAAGAAGTTGCTGGATTAGTGGAATTCTTGGCGCTTAGTCAAGCTGCCAGCTACATCACTGGGCAGGTCATTTTACTTAATTGA

Protein sequence

>MsG0380016216.01.T01

MASLTGSNCVALRSATFAAAGNRKITQIRHYSPLLNHLRPVSGLQTRSNISFNSTGVRAQVATLADAATEAVQKVESPVVIVTGASRGIGKAIALALGKQVARLVVENLFTKFFDIIVTSGFGEIFQIRLLVLVNYARSSKEAEEVSKEIEALGGQALTYGGDVSNEADVNSMIKTAVDAWGTVDVLINNAGKLKRSCDCATLSIFPHTQTRLYGYRNNQRWFIDENEEVSAAAKIMMKNKKVTTIYSFILPILISWKDNQYFISCWFDWQCWTSQLCCCKSRSNWPDKICCKEYSSRGITVNAVAPGFIASDMTAKLGNDLEKKILEAIPLGRYGQPEEVAGLVEFLALSQAASYITGQVILLN*