Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016216.01.T01 | XP_004502323.1 | 57.632 | 380 | 81 | 6 | 1 | 365 | 1 | 315 | 1.01E-125 | 374 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016216.01.T01 | Q93X62 | 46.24 | 359 | 116 | 6 | 21 | 365 | 20 | 315 | 1.12E-83 | 259 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016216.01.T01 | G7JC28 | 63.588 | 379 | 60 | 6 | 1 | 365 | 1 | 315 | 6.13e-144 | 420 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048773.01 | MsG0380016216.01 | 0.801555 | 8.519456e-49 | 4.080581e-46 |
MsG0080048801.01 | MsG0380016216.01 | 0.811248 | 7.699477e-51 | 4.742096e-48 |
MsG0080048876.01 | MsG0380016216.01 | 0.837336 | 5.519797e-57 | 7.147203e-54 |
MsG0080049040.01 | MsG0380016216.01 | 0.819124 | 1.369464e-52 | 1.044689e-49 |
MsG0080049068.01 | MsG0380016216.01 | 0.820288 | 7.423291e-53 | 5.849311e-50 |
MsG0180000354.01 | MsG0380016216.01 | 0.820818 | 5.609226e-53 | 4.485446e-50 |
MsG0180000431.01 | MsG0380016216.01 | 0.825832 | 3.780694e-54 | 3.485004e-51 |
MsG0180000785.01 | MsG0380016216.01 | 0.802047 | 6.752523e-49 | 3.274899e-46 |
MsG0180000845.01 | MsG0380016216.01 | 0.843681 | 1.206389e-58 | 1.902106e-55 |
MsG0180001085.01 | MsG0380016216.01 | 0.822619 | 2.149690e-53 | 1.808789e-50 |
MsG0180001105.01 | MsG0380016216.01 | 0.801463 | 8.898439e-49 | 4.252193e-46 |
MsG0180002800.01 | MsG0380016216.01 | 0.800363 | 1.493074e-48 | 6.939094e-46 |
MsG0180003353.01 | MsG0380016216.01 | 0.819406 | 1.181011e-52 | 9.080005e-50 |
MsG0180004103.01 | MsG0380016216.01 | 0.817759 | 2.791797e-52 | 2.051147e-49 |
MsG0180004192.01 | MsG0380016216.01 | 0.810620 | 1.053034e-50 | 6.378469e-48 |
MsG0180004428.01 | MsG0380016216.01 | 0.827218 | 1.766748e-54 | 1.694706e-51 |
MsG0180004466.01 | MsG0380016216.01 | 0.831190 | 1.921011e-55 | 2.069287e-52 |
MsG0180004735.01 | MsG0380016216.01 | 0.830419 | 2.968802e-55 | 3.126062e-52 |
MsG0180004759.01 | MsG0380016216.01 | -0.820262 | 7.528400e-53 | 5.927798e-50 |
MsG0180005039.01 | MsG0380016216.01 | 0.817763 | 2.785690e-52 | 2.046910e-49 |
MsG0180005807.01 | MsG0380016216.01 | 0.802330 | 5.905084e-49 | 2.884810e-46 |
MsG0380014907.01 | MsG0380016216.01 | 0.847405 | 1.180458e-59 | 2.096032e-56 |
MsG0380014940.01 | MsG0380016216.01 | 0.813519 | 2.457349e-51 | 1.608297e-48 |
MsG0380015603.01 | MsG0380016216.01 | 0.807344 | 5.291296e-50 | 2.939987e-47 |
MsG0380015645.01 | MsG0380016216.01 | 0.818438 | 1.960193e-52 | 1.467421e-49 |
MsG0380015693.01 | MsG0380016216.01 | 0.807420 | 5.098620e-50 | 2.838592e-47 |
MsG0380015870.01 | MsG0380016216.01 | 0.819361 | 1.209546e-52 | 9.287061e-50 |
MsG0380015896.01 | MsG0380016216.01 | 0.803547 | 3.308731e-49 | 1.667467e-46 |
MsG0380016192.01 | MsG0380016216.01 | 0.840304 | 9.425919e-58 | 1.336997e-54 |
MsG0380016216.01 | MsG0380017423.01 | 0.800796 | 1.218111e-48 | 5.723516e-46 |
MsG0380016216.01 | MsG0380017703.01 | 0.804666 | 1.936314e-49 | 1.004247e-46 |
MsG0380016216.01 | MsG0380017785.01 | 0.803282 | 3.755901e-49 | 1.879788e-46 |
MsG0380016216.01 | MsG0380018069.01 | 0.824065 | 9.874725e-54 | 8.654238e-51 |
MsG0380016216.01 | MsG0480019340.01 | 0.807854 | 4.123863e-50 | 2.321868e-47 |
MsG0380016216.01 | MsG0480020315.01 | 0.803092 | 4.110739e-49 | 2.047354e-46 |
MsG0380016216.01 | MsG0480020408.01 | 0.800201 | 1.610332e-48 | 7.453077e-46 |
MsG0380016216.01 | MsG0480020690.01 | 0.845955 | 2.940049e-59 | 4.982454e-56 |
MsG0380016216.01 | MsG0480020758.01 | 0.810282 | 1.245739e-50 | 7.477892e-48 |
MsG0380016216.01 | MsG0480021803.01 | 0.816832 | 4.512248e-52 | 3.231937e-49 |
MsG0380016216.01 | MsG0480022149.01 | 0.823117 | 1.646286e-53 | 1.404782e-50 |
MsG0380016216.01 | MsG0480022260.01 | 0.855434 | 6.323554e-62 | 1.459811e-58 |
MsG0380016216.01 | MsG0480022586.01 | 0.818750 | 1.665143e-52 | 1.257188e-49 |
MsG0380016216.01 | MsG0480023314.01 | 0.810924 | 9.049271e-51 | 5.526385e-48 |
MsG0380016216.01 | MsG0480023367.01 | 0.814469 | 1.516634e-51 | 1.018552e-48 |
MsG0380016216.01 | MsG0480023384.01 | 0.833063 | 6.613725e-56 | 7.532042e-53 |
MsG0380016216.01 | MsG0480023845.01 | 0.805599 | 1.234864e-49 | 6.560063e-47 |
MsG0380016216.01 | MsG0580025588.01 | 0.855500 | 6.051666e-62 | 1.399974e-58 |
MsG0380016216.01 | MsG0580025668.01 | 0.813852 | 2.074778e-51 | 1.370198e-48 |
MsG0380016216.01 | MsG0580025828.01 | 0.804752 | 1.857869e-49 | 9.657745e-47 |
MsG0380016216.01 | MsG0580025971.01 | 0.820308 | 7.344923e-53 | 5.790822e-50 |
MsG0380016216.01 | MsG0580027394.01 | 0.818854 | 1.577385e-52 | 1.194443e-49 |
MsG0380016216.01 | MsG0580028059.01 | 0.813186 | 2.907466e-51 | 1.885586e-48 |
MsG0380016216.01 | MsG0580029529.01 | 0.806301 | 8.792359e-50 | 4.755583e-47 |
MsG0380016216.01 | MsG0680030627.01 | 0.801539 | 8.586700e-49 | 4.111098e-46 |
MsG0380016216.01 | MsG0680033377.01 | 0.823254 | 1.529627e-53 | 1.310158e-50 |
MsG0380016216.01 | MsG0680034064.01 | 0.811157 | 8.057526e-51 | 4.950669e-48 |
MsG0380016216.01 | MsG0680034767.01 | 0.809559 | 1.782497e-50 | 1.049922e-47 |
MsG0380016216.01 | MsG0680035731.01 | 0.825643 | 4.190824e-54 | 3.842288e-51 |
MsG0380016216.01 | MsG0680035791.01 | 0.804109 | 2.529159e-49 | 1.293064e-46 |
MsG0380016216.01 | MsG0780035992.01 | 0.811932 | 5.465975e-51 | 3.427891e-48 |
MsG0380016216.01 | MsG0780036660.01 | 0.809835 | 1.555035e-50 | 9.226661e-48 |
MsG0380016216.01 | MsG0780038351.01 | 0.813060 | 3.097896e-51 | 2.002344e-48 |
MsG0380016216.01 | MsG0780038616.01 | 0.827653 | 1.388892e-54 | 1.349162e-51 |
MsG0380016216.01 | MsG0780038784.01 | 0.818102 | 2.334968e-52 | 1.731640e-49 |
MsG0380016216.01 | MsG0780039155.01 | 0.835724 | 1.420464e-56 | 1.751987e-53 |
MsG0380016216.01 | MsG0780039746.01 | 0.812449 | 4.215630e-51 | 2.681340e-48 |
MsG0380016216.01 | MsG0780039853.01 | 0.819191 | 1.322004e-52 | 1.010334e-49 |
MsG0380016216.01 | MsG0780039954.01 | 0.822682 | 2.078637e-53 | 1.752020e-50 |
MsG0380016216.01 | MsG0780040388.01 | 0.816914 | 4.324365e-52 | 3.104379e-49 |
MsG0380016216.01 | MsG0780040443.01 | 0.845848 | 3.144700e-59 | 5.311042e-56 |
MsG0380016216.01 | MsG0780041138.01 | 0.834205 | 3.428899e-56 | 4.040483e-53 |
MsG0380016216.01 | MsG0780041634.01 | 0.810937 | 8.992625e-51 | 5.493710e-48 |
MsG0380016216.01 | MsG0880041947.01 | 0.810092 | 1.369069e-50 | 8.177647e-48 |
MsG0380016216.01 | MsG0880042890.01 | 0.835165 | 1.966530e-56 | 2.385139e-53 |
MsG0380016216.01 | MsG0880042894.01 | 0.831163 | 1.949974e-55 | 2.098816e-52 |
MsG0380016216.01 | MsG0880043965.01 | 0.816142 | 6.440994e-52 | 4.527222e-49 |
MsG0380016216.01 | MsG0880044392.01 | 0.813205 | 2.880382e-51 | 1.868988e-48 |
MsG0380016216.01 | MsG0880045044.01 | 0.820176 | 7.876348e-53 | 6.187479e-50 |
MsG0380016216.01 | MsG0880045101.01 | 0.801167 | 1.023075e-48 | 4.852624e-46 |
MsG0380016216.01 | MsG0880045158.01 | 0.821479 | 3.950545e-53 | 3.217627e-50 |
MsG0380016216.01 | MsG0880045558.01 | 0.816292 | 5.963418e-52 | 4.208982e-49 |
MsG0380016216.01 | MsG0880046054.01 | 0.805589 | 1.241164e-49 | 6.591879e-47 |
MsG0380016216.01 | MsG0880046867.01 | 0.824984 | 6.000812e-54 | 5.399724e-51 |
MsG0380016216.01 | MsG0880047234.01 | 0.808778 | 2.620320e-50 | 1.511521e-47 |
MsG0380016216.01 | MsG0880047422.01 | -0.801390 | 9.210405e-49 | 4.393166e-46 |
MsG0380016216.01 | MsG0880047703.01 | 0.811910 | 5.528371e-51 | 3.464948e-48 |
MsG0280007075.01 | MsG0380016216.01 | 0.832271 | 1.039910e-55 | 1.156421e-52 |
MsG0280007502.01 | MsG0380016216.01 | 0.834558 | 2.796506e-56 | 3.330860e-53 |
MsG0280007976.01 | MsG0380016216.01 | 0.805018 | 1.634861e-49 | 8.556284e-47 |
MsG0280008451.01 | MsG0380016216.01 | 0.818632 | 1.771418e-52 | 1.333037e-49 |
MsG0280010503.01 | MsG0380016216.01 | 0.823221 | 1.556551e-53 | 1.332048e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016216.01.T01 | MTR_3g085740 | 63.588 | 379 | 60 | 6 | 1 | 365 | 1 | 315 | 1.55e-147 | 420 |
MsG0380016216.01.T01 | MTR_3g101040 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 3.33e-22 | 90.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016216.01.T01 | AT1G24360 | 42.513 | 374 | 143 | 7 | 2 | 365 | 3 | 314 | 1.92e-79 | 246 |
MsG0380016216.01.T01 | AT2G30670 | 47.297 | 74 | 36 | 2 | 294 | 365 | 176 | 248 | 8.34e-11 | 62.4 |
Find 93 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGCATATGGTACACTATTA+TGG | 0.246388 | 3:+80571587 | MsG0380016216.01.T01:five_prime_UTR |
ATTATTGTTACAAGTGGTTT+TGG | 0.259270 | 3:+80572864 | MsG0380016216.01.T01:CDS |
AATCATCTGCGTCCTGTTTC+CGG | 0.282070 | 3:+80571913 | MsG0380016216.01.T01:CDS |
TGCTGGATTAGTGGAATTCT+TGG | 0.283631 | 3:+80575339 | MsG0380016216.01.T01:CDS |
GGTTGAGTTAAACGAAATAT+TGG | 0.295744 | 3:-80571950 | None:intergenic |
TCATCAGTTGTTGGTTTGAT+TGG | 0.305542 | 3:+80574941 | MsG0380016216.01.T01:CDS |
TACAATCTTGTTTGAGTATG+AGG | 0.306114 | 3:-80574405 | None:intergenic |
GCTGCAAAAGCAGGAGTAAT+TGG | 0.309144 | 3:+80574989 | MsG0380016216.01.T01:CDS |
ACTCCTACAAGAAATCAAAA+TGG | 0.314075 | 3:-80574682 | None:intergenic |
CTCAAGGTCATTTCCTAACT+TGG | 0.314108 | 3:-80575180 | None:intergenic |
AAACAAGATTGTATGGTTAT+AGG | 0.326554 | 3:+80574415 | MsG0380016216.01.T01:CDS |
ACAGCAATGGCTTCTCTTAC+CGG | 0.335931 | 3:+80571802 | MsG0380016216.01.T01:exon |
GGAAACCTCTTCAGCTTCCT+TGG | 0.347864 | 3:-80573028 | None:intergenic |
TCATTTCATTTCATTTCCTC+TGG | 0.350340 | 3:+80571756 | MsG0380016216.01.T01:five_prime_UTR |
ACTAATCCAGCAACTTCTTC+TGG | 0.371540 | 3:-80575328 | None:intergenic |
ACGTTGAATTTAGGACGATA+TGG | 0.382624 | 3:+80575301 | MsG0380016216.01.T01:intron |
AATATTTCGTTTAACTCAAC+CGG | 0.391775 | 3:+80571952 | MsG0380016216.01.T01:CDS |
AAAGCAATTGCGTTAGCGTT+AGG | 0.392256 | 3:+80572163 | MsG0380016216.01.T01:CDS |
CAGGTTAATGCTGTTGCTCC+AGG | 0.394323 | 3:+80575134 | MsG0380016216.01.T01:intron |
TTCCACTTTCTGAACTGCTT+CGG | 0.396378 | 3:-80572098 | None:intergenic |
TCGCCGGTTGTGATTGTTAC+CGG | 0.401377 | 3:+80572121 | MsG0380016216.01.T01:CDS |
ATCAATATTTCATCAGTTGT+TGG | 0.404399 | 3:+80574932 | MsG0380016216.01.T01:CDS |
GAGTATGAGGGAAGATAGAA+AGG | 0.409737 | 3:-80574392 | None:intergenic |
TTTGTAGGCAGTAGATGCTT+GGG | 0.417671 | 3:+80574308 | MsG0380016216.01.T01:intron |
TCTGACATGACTGCCAAGTT+AGG | 0.421559 | 3:+80575167 | MsG0380016216.01.T01:CDS |
TGCGTTAGCGTTAGGTAAGC+AGG | 0.430933 | 3:+80572171 | MsG0380016216.01.T01:CDS |
GTTGGTTTGATTGGCAATGC+TGG | 0.445619 | 3:+80574950 | MsG0380016216.01.T01:CDS |
CATACTCAAACAAGATTGTA+TGG | 0.449816 | 3:+80574408 | MsG0380016216.01.T01:CDS |
AGAAGAAGTTGCTGGATTAG+TGG | 0.457509 | 3:+80575330 | MsG0380016216.01.T01:CDS |
TCTCATCAATAAACCATCTC+TGG | 0.460320 | 3:-80574443 | None:intergenic |
TCCGATACCTCTGGAAGCTC+CGG | 0.461105 | 3:-80572140 | None:intergenic |
ATTTGTAGGCAGTAGATGCT+TGG | 0.464311 | 3:+80574307 | MsG0380016216.01.T01:intron |
CTCCTACAAGAAATCAAAAT+GGG | 0.474493 | 3:-80574681 | None:intergenic |
TATGTACCCTTTGTAGCATA+TGG | 0.483390 | 3:+80571574 | None:intergenic |
AATTATGCTGCTGCAAAAGC+AGG | 0.487568 | 3:+80574980 | MsG0380016216.01.T01:CDS |
CTAGTTTGAAGACCGGAAAC+AGG | 0.488153 | 3:-80571925 | None:intergenic |
GGAACGGAGAGCGACGCAAT+TGG | 0.488510 | 3:-80571827 | None:intergenic |
GGCCAACCAGAAGAAGTTGC+TGG | 0.489361 | 3:+80575322 | MsG0380016216.01.T01:CDS |
CAAGCTGCCAGCTACATCAC+TGG | 0.490614 | 3:+80575370 | MsG0380016216.01.T01:CDS |
CGTTGTGTTTGTTAGTACTT+TGG | 0.494267 | 3:-80571699 | None:intergenic |
TGTTAGTACTTTGGAAGCTC+CGG | 0.497080 | 3:-80571690 | None:intergenic |
GAAATGAAGAGAAGAGAGGA+TGG | 0.509610 | 3:-80571740 | None:intergenic |
GGAAGCTGAAGAGGTTTCCA+AGG | 0.510390 | 3:+80573032 | MsG0380016216.01.T01:CDS |
TTTCTCTTTCAAAACAGCAA+TGG | 0.512327 | 3:+80571789 | MsG0380016216.01.T01:exon |
TTTGATATTATTGTTACAAG+TGG | 0.517141 | 3:+80572858 | MsG0380016216.01.T01:CDS |
ATGTCAGATGCAATGAATCC+TGG | 0.521848 | 3:-80575152 | None:intergenic |
GGTGGGCAAGCTCTAACATA+TGG | 0.524116 | 3:+80574173 | MsG0380016216.01.T01:CDS |
ACCGGAGCTTCCAGAGGTAT+CGG | 0.526611 | 3:+80572139 | MsG0380016216.01.T01:CDS |
GAGAGCGACGCAATTGGATC+CGG | 0.528319 | 3:-80571821 | None:intergenic |
ATTGGATCTAGTTTGAAGAC+CGG | 0.529069 | 3:-80571932 | None:intergenic |
ATCCAGCAACTTCTTCTGGT+TGG | 0.533238 | 3:-80575324 | None:intergenic |
GGTTGCTACACTGGCGGACG+CGG | 0.533600 | 3:+80572072 | MsG0380016216.01.T01:CDS |
GTTACCGGCGGCGGCAAAAG+TGG | 0.536568 | 3:-80571851 | None:intergenic |
GATTATGATGAAGAATAAGA+AGG | 0.545866 | 3:+80574632 | MsG0380016216.01.T01:CDS |
GTGAGAATGTTGTTATTGAG+TGG | 0.546998 | 3:-80571664 | None:intergenic |
ACAATCTTGTTTGAGTATGA+GGG | 0.557094 | 3:-80574404 | None:intergenic |
GCTCCGGTAACAATCACAAC+CGG | 0.558097 | 3:-80572124 | None:intergenic |
GAGAGCACAGGTTGCTACAC+TGG | 0.559959 | 3:+80572063 | MsG0380016216.01.T01:CDS |
GCCTGACAAAATCTGTTGCA+AGG | 0.563266 | 3:+80575011 | MsG0380016216.01.T01:CDS |
TGCCAGCTACATCACTGGGC+AGG | 0.563723 | 3:+80575375 | MsG0380016216.01.T01:CDS |
GATTGAGAAGTGGAGAGTAA+TGG | 0.569836 | 3:-80571894 | None:intergenic |
ATTGTTTATCAATACATCAA+CGG | 0.570986 | 3:-80574334 | None:intergenic |
ATCATCCAAGGAAGCTGAAG+AGG | 0.573441 | 3:+80573023 | MsG0380016216.01.T01:CDS |
GTTATAGGAATAACCAGAGA+TGG | 0.573576 | 3:+80574430 | MsG0380016216.01.T01:CDS |
CGGCGGCAAAAGTGGCGGAA+CGG | 0.576146 | 3:-80571843 | None:intergenic |
TACAAGAAATCAAAATGGGA+AGG | 0.576954 | 3:-80574677 | None:intergenic |
AGTATGAGGGAAGATAGAAA+GGG | 0.581580 | 3:-80574391 | None:intergenic |
CGTTAGGTAAGCAGGTTGCA+AGG | 0.581972 | 3:+80572179 | MsG0380016216.01.T01:CDS |
AACCGAAGCAGTTCAGAAAG+TGG | 0.583413 | 3:+80572096 | MsG0380016216.01.T01:CDS |
GATGTATTGATAAACAATGC+CGG | 0.584295 | 3:+80574339 | MsG0380016216.01.T01:CDS |
AAATGAAATGAAGAGAAGAG+AGG | 0.590934 | 3:-80571744 | None:intergenic |
AGTTCAGAAAGTGGAATCGC+CGG | 0.598878 | 3:+80572105 | MsG0380016216.01.T01:CDS |
TGTAGATTGAAGCACTCGGT+GGG | 0.599744 | 3:+80574156 | MsG0380016216.01.T01:intron |
ACCGGCGGCGGCAAAAGTGG+CGG | 0.604634 | 3:-80571848 | None:intergenic |
CAACTATGCAAGATCATCCA+AGG | 0.609283 | 3:+80573011 | MsG0380016216.01.T01:CDS |
TCATTGCAAGGACTAAAAGA+CGG | 0.610354 | 3:-80572902 | None:intergenic |
GGGCAAGCTCTAACATATGG+TGG | 0.611395 | 3:+80574176 | MsG0380016216.01.T01:CDS |
ACGTGATGTGTAGTCTCAGT+AGG | 0.613682 | 3:-80571633 | None:intergenic |
GGACGCAGATGATTGAGAAG+TGG | 0.616684 | 3:-80571904 | None:intergenic |
GAGAAAATGGAAGAAGCCAG+AGG | 0.621180 | 3:-80571772 | None:intergenic |
TTGTAGATTGAAGCACTCGG+TGG | 0.621839 | 3:+80574155 | MsG0380016216.01.T01:intron |
AAGCTGCCAGCTACATCACT+GGG | 0.623670 | 3:+80575371 | MsG0380016216.01.T01:CDS |
TGCAAGGAATATTCTAGCAG+AGG | 0.642151 | 3:+80575027 | MsG0380016216.01.T01:CDS |
TTGTAGGCAGTAGATGCTTG+GGG | 0.648579 | 3:+80574309 | MsG0380016216.01.T01:intron |
ATAACAACATTCTCACACTC+CGG | 0.650450 | 3:+80571671 | MsG0380016216.01.T01:five_prime_UTR |
ATTGTTACCGGAGCTTCCAG+AGG | 0.650765 | 3:+80572133 | MsG0380016216.01.T01:CDS |
GAATGTTGTTATTGAGTGGA+CGG | 0.655046 | 3:-80571660 | None:intergenic |
TGAGCTGTGAAGCTTAGCAA+TGG | 0.656875 | 3:-80571610 | None:intergenic |
TGAGAAGTGGAGAGTAATGG+CGG | 0.660025 | 3:-80571891 | None:intergenic |
AGCTGAAGAGGTTTCCAAGG+AGG | 0.661491 | 3:+80573035 | MsG0380016216.01.T01:CDS |
AGCACAGGTTGCTACACTGG+CGG | 0.662783 | 3:+80572066 | MsG0380016216.01.T01:CDS |
TATTTGTAGATTGAAGCACT+CGG | 0.665627 | 3:+80574152 | MsG0380016216.01.T01:intron |
GACCTGCCCAGTGATGTAGC+TGG | 0.695510 | 3:-80575377 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATTAGAATCAAACTT+TGG | - | Chr3:80574823-80574842 | None:intergenic | 15.0% |
!! | AAGCACAATATTAAAAATTA+TGG | - | Chr3:80573985-80574004 | None:intergenic | 15.0% |
!! | ACATTACATATTAAAAGTAA+CGG | - | Chr3:80573234-80573253 | None:intergenic | 15.0% |
!! | TGGATGAAATTAATAAATAA+GGG | - | Chr3:80573791-80573810 | None:intergenic | 15.0% |
!! | TTGGATGAAATTAATAAATA+AGG | - | Chr3:80573792-80573811 | None:intergenic | 15.0% |
!! | AATATCTAAAGAATATCTTG+CGG | + | Chr3:80572502-80572521 | MsG0380016216.01.T01:intron | 20.0% |
!! | ATTGTTTATCAATACATCAA+CGG | - | Chr3:80574337-80574356 | None:intergenic | 20.0% |
!! | ATTTAACAATTGACAATATC+AGG | - | Chr3:80575088-80575107 | None:intergenic | 20.0% |
!! | CATAAAAACAGAAACATTAA+TGG | - | Chr3:80573111-80573130 | None:intergenic | 20.0% |
!! | CATATCAGATTAAAAGAAAA+GGG | - | Chr3:80574579-80574598 | None:intergenic | 20.0% |
!! | CTAAAACTATAATATTGTTG+AGG | - | Chr3:80573378-80573397 | None:intergenic | 20.0% |
!! | TATAAGTCTACCAAATATTT+GGG | - | Chr3:80573327-80573346 | None:intergenic | 20.0% |
!! | TCATATCAGATTAAAAGAAA+AGG | - | Chr3:80574580-80574599 | None:intergenic | 20.0% |
!! | TCTTATTAATTGTTAGTTAG+TGG | - | Chr3:80573825-80573844 | None:intergenic | 20.0% |
!! | TTAACAACATCTTCAAATTA+CGG | - | Chr3:80575261-80575280 | None:intergenic | 20.0% |
!! | TTATAAGTCTACCAAATATT+TGG | - | Chr3:80573328-80573347 | None:intergenic | 20.0% |
!! | TTTAGTATAAACTTTAACCA+TGG | - | Chr3:80573151-80573170 | None:intergenic | 20.0% |
!! | TTTGATATTATTGTTACAAG+TGG | + | Chr3:80572858-80572877 | MsG0380016216.01.T01:CDS | 20.0% |
!!! | TCAACATTCATGTTATTTTT+TGG | + | Chr3:80572246-80572265 | MsG0380016216.01.T01:intron | 20.0% |
!!! | TGATTAATTGTTGATTTCAA+TGG | - | Chr3:80573875-80573894 | None:intergenic | 20.0% |
! | AAAAGTAGATACTCTACTTT+AGG | - | Chr3:80574877-80574896 | None:intergenic | 25.0% |
! | AAACAAGATTGTATGGTTAT+AGG | + | Chr3:80574415-80574434 | MsG0380016216.01.T01:CDS | 25.0% |
! | AATATTTCGTTTAACTCAAC+CGG | + | Chr3:80571952-80571971 | MsG0380016216.01.T01:CDS | 25.0% |
! | AATTCTTATTGTTCCTAGAT+AGG | - | Chr3:80574796-80574815 | None:intergenic | 25.0% |
! | ATAAGTCTACCAAATATTTG+GGG | - | Chr3:80573326-80573345 | None:intergenic | 25.0% |
! | ATAATCACACATATTTCAGA+AGG | - | Chr3:80573071-80573090 | None:intergenic | 25.0% |
! | ATCAATATTTCATCAGTTGT+TGG | + | Chr3:80574932-80574951 | MsG0380016216.01.T01:CDS | 25.0% |
! | ATTTGGTAGACTTATAAAGT+TGG | + | Chr3:80573331-80573350 | MsG0380016216.01.T01:intron | 25.0% |
! | CACAATTAATGTTAATGACT+TGG | + | Chr3:80573641-80573660 | MsG0380016216.01.T01:intron | 25.0% |
! | CATTATCAGTTTATGTCTAA+CGG | - | Chr3:80572219-80572238 | None:intergenic | 25.0% |
! | GATTATGATGAAGAATAAGA+AGG | + | Chr3:80574632-80574651 | MsG0380016216.01.T01:CDS | 25.0% |
! | GGAATAATTAATGACTTGAA+CGG | - | Chr3:80574727-80574746 | None:intergenic | 25.0% |
! | GTCATTAATTATTCCTAAAG+TGG | + | Chr3:80574732-80574751 | MsG0380016216.01.T01:intron | 25.0% |
! | TATTTCTTGCATTTACCTAA+TGG | - | Chr3:80575227-80575246 | None:intergenic | 25.0% |
! | TTGAGAAAAAATTCCACTTT+AGG | - | Chr3:80574748-80574767 | None:intergenic | 25.0% |
! | TTTATGACTTTCACATTTGT+AGG | + | Chr3:80574293-80574312 | MsG0380016216.01.T01:intron | 25.0% |
!! | AATAAATAAGGGCATAATAG+TGG | - | Chr3:80573780-80573799 | None:intergenic | 25.0% |
!! | ATACTCTACTTTAGGAATAA+AGG | - | Chr3:80574869-80574888 | None:intergenic | 25.0% |
!! | ATTATTGTTACAAGTGGTTT+TGG | + | Chr3:80572864-80572883 | MsG0380016216.01.T01:CDS | 25.0% |
!! | TACATGCACTTAATATTTTC+AGG | + | Chr3:80572981-80573000 | MsG0380016216.01.T01:intron | 25.0% |
!! | TTTTATCAATTTCACCTCAA+TGG | - | Chr3:80573616-80573635 | None:intergenic | 25.0% |
!! | TTTTATGCCAATCTAATATC+AGG | + | Chr3:80573124-80573143 | MsG0380016216.01.T01:intron | 25.0% |
!!! | AAACGACTATTATTTTGAGA+TGG | + | Chr3:80573921-80573940 | MsG0380016216.01.T01:intron | 25.0% |
!!! | AAGAGACAATTATTTTGAGA+CGG | - | Chr3:80573692-80573711 | None:intergenic | 25.0% |
!!! | AGACTGTTAATTTTTTTTGC+AGG | + | Chr3:80574599-80574618 | MsG0380016216.01.T01:intron | 25.0% |
!!! | ATTCTATGATTTTTTTAGCC+AGG | + | Chr3:80573544-80573563 | MsG0380016216.01.T01:intron | 25.0% |
!!! | ATTTTTTGCACGTTGAATTT+AGG | + | Chr3:80575292-80575311 | MsG0380016216.01.T01:intron | 25.0% |
!!! | CACTTAATATTTTCAGGTTT+TGG | + | Chr3:80572987-80573006 | MsG0380016216.01.T01:intron | 25.0% |
!!! | TAAATCAACCAGAACTTTTT+TGG | - | Chr3:80572700-80572719 | None:intergenic | 25.0% |
!!! | TTCTATGATTTTTTTAGCCA+GGG | + | Chr3:80573545-80573564 | MsG0380016216.01.T01:intron | 25.0% |
AAATGAAATGAAGAGAAGAG+AGG | - | Chr3:80571747-80571766 | None:intergenic | 30.0% | |
AAGTTTGTGCACGATATTTA+AGG | - | Chr3:80573901-80573920 | None:intergenic | 30.0% | |
ACAAGTTACATAAATTGCGA+TGG | - | Chr3:80572372-80572391 | None:intergenic | 30.0% | |
ACTCCTACAAGAAATCAAAA+TGG | - | Chr3:80574685-80574704 | None:intergenic | 30.0% | |
AGATTTCTAACAAGATTACC+AGG | - | Chr3:80572541-80572560 | None:intergenic | 30.0% | |
ATGTTATATTGATGCATGCT+TGG | + | Chr3:80574036-80574055 | MsG0380016216.01.T01:intron | 30.0% | |
CAATAGTTAGAATTCCTTGT+AGG | + | Chr3:80572604-80572623 | MsG0380016216.01.T01:intron | 30.0% | |
CATACTCAAACAAGATTGTA+TGG | + | Chr3:80574408-80574427 | MsG0380016216.01.T01:CDS | 30.0% | |
CGTGCAAAAAATAAGTTAAG+CGG | - | Chr3:80575284-80575303 | None:intergenic | 30.0% | |
CTCCTACAAGAAATCAAAAT+GGG | - | Chr3:80574684-80574703 | None:intergenic | 30.0% | |
CTTCATTTCCAAAAAAGTTC+TGG | + | Chr3:80572689-80572708 | MsG0380016216.01.T01:intron | 30.0% | |
GGTTGAGTTAAACGAAATAT+TGG | - | Chr3:80571953-80571972 | None:intergenic | 30.0% | |
GTTATTGATCTAAATCTCAC+TGG | + | Chr3:80574490-80574509 | MsG0380016216.01.T01:intron | 30.0% | |
TACAAGAAATCAAAATGGGA+AGG | - | Chr3:80574680-80574699 | None:intergenic | 30.0% | |
TAGCATATGGTACACTATTA+TGG | + | Chr3:80571587-80571606 | MsG0380016216.01.T01:five_prime_UTR | 30.0% | |
TCATAGAATGATCAACATCT+TGG | - | Chr3:80573533-80573552 | None:intergenic | 30.0% | |
TCATTTCATTTCATTTCCTC+TGG | + | Chr3:80571756-80571775 | MsG0380016216.01.T01:five_prime_UTR | 30.0% | |
TTGTTCTTTCTTTACCATTG+AGG | + | Chr3:80573599-80573618 | MsG0380016216.01.T01:intron | 30.0% | |
TTTCTCAACAAATCCTATCT+AGG | + | Chr3:80574780-80574799 | MsG0380016216.01.T01:intron | 30.0% | |
TTTCTCTTTCAAAACAGCAA+TGG | + | Chr3:80571789-80571808 | MsG0380016216.01.T01:exon | 30.0% | |
! | ACAACTTTGATTTCATTGCA+AGG | - | Chr3:80572917-80572936 | None:intergenic | 30.0% |
! | ACAAGATCTTTTCAACTTAC+CGG | - | Chr3:80574361-80574380 | None:intergenic | 30.0% |
! | ACAATCTTGTTTGAGTATGA+GGG | - | Chr3:80574407-80574426 | None:intergenic | 30.0% |
! | GATGTATTGATAAACAATGC+CGG | + | Chr3:80574339-80574358 | MsG0380016216.01.T01:CDS | 30.0% |
! | TACAATCTTGTTTGAGTATG+AGG | - | Chr3:80574408-80574427 | None:intergenic | 30.0% |
! | TATTTGTAGATTGAAGCACT+CGG | + | Chr3:80574152-80574171 | MsG0380016216.01.T01:intron | 30.0% |
! | TGACCTTGAGAAAAAGATTT+TGG | + | Chr3:80575193-80575212 | MsG0380016216.01.T01:CDS | 30.0% |
! | TGCTGTAAATGTAATGCTTT+TGG | + | Chr3:80572943-80572962 | MsG0380016216.01.T01:intron | 30.0% |
!! | AGAGTATCTACTTTTAAACG+TGG | + | Chr3:80574882-80574901 | MsG0380016216.01.T01:intron | 30.0% |
!! | AGGATTTGTTGAGAAATTAG+AGG | - | Chr3:80574776-80574795 | None:intergenic | 30.0% |
!!! | CAGAACTTTTTTGGAAATGA+AGG | - | Chr3:80572691-80572710 | None:intergenic | 30.0% |
!!! | CTGTTAATTTTTTTTGCAGG+CGG | + | Chr3:80574602-80574621 | MsG0380016216.01.T01:intron | 30.0% |
!!! | GACTATTATTTTGAGATGGA+GGG | + | Chr3:80573925-80573944 | MsG0380016216.01.T01:intron | 30.0% |
!!! | TGCTGTTTTGAAAGAGAAAA+TGG | - | Chr3:80571788-80571807 | None:intergenic | 30.0% |
!!! | TGGATGCTTGTATTTTTTCA+GGG | + | Chr3:80574902-80574921 | MsG0380016216.01.T01:intron | 30.0% |
!!! | TTCCCATTTTGATTTCTTGT+AGG | + | Chr3:80574679-80574698 | MsG0380016216.01.T01:intron | 30.0% |
AGTATGAGGGAAGATAGAAA+GGG | - | Chr3:80574394-80574413 | None:intergenic | 35.0% | |
ATAACAACATTCTCACACTC+CGG | + | Chr3:80571671-80571690 | MsG0380016216.01.T01:five_prime_UTR | 35.0% | |
ATTAACCTGGCAAGAAAAAC+AGG | - | Chr3:80575123-80575142 | None:intergenic | 35.0% | |
CAATTCTGACAGAAATTTGG+GGG | - | Chr3:80572583-80572602 | None:intergenic | 35.0% | |
CCAATTCTGACAGAAATTTG+GGG | - | Chr3:80572584-80572603 | None:intergenic | 35.0% | |
CTTCAAAATATTCACCTGTG+TGG | - | Chr3:80574528-80574547 | None:intergenic | 35.0% | |
GCCAATTCTGACAGAAATTT+GGG | - | Chr3:80572585-80572604 | None:intergenic | 35.0% | |
GTTATAGGAATAACCAGAGA+TGG | + | Chr3:80574430-80574449 | MsG0380016216.01.T01:CDS | 35.0% | |
TCATTGCAAGGACTAAAAGA+CGG | - | Chr3:80572905-80572924 | None:intergenic | 35.0% | |
TCTCATCAATAAACCATCTC+TGG | - | Chr3:80574446-80574465 | None:intergenic | 35.0% | |
TGAAAGTCATAAAGCAGCAA+AGG | - | Chr3:80574286-80574305 | None:intergenic | 35.0% | |
TGCCAATTCTGACAGAAATT+TGG | - | Chr3:80572586-80572605 | None:intergenic | 35.0% | |
TGCGGTAATAATGAAATTCC+TGG | + | Chr3:80572520-80572539 | MsG0380016216.01.T01:intron | 35.0% | |
TGGTAGACTTATAAAGTTGG+TGG | + | Chr3:80573334-80573353 | MsG0380016216.01.T01:intron | 35.0% | |
TTAACCTGGCAAGAAAAACA+GGG | - | Chr3:80575122-80575141 | None:intergenic | 35.0% | |
TTCATTCTGCCCCAAATATT+TGG | + | Chr3:80573314-80573333 | MsG0380016216.01.T01:intron | 35.0% | |
TTCTTGTAGGAGTCCTATTT+AGG | + | Chr3:80574692-80574711 | MsG0380016216.01.T01:intron | 35.0% | |
! | ACGTTGAATTTAGGACGATA+TGG | + | Chr3:80575301-80575320 | MsG0380016216.01.T01:intron | 35.0% |
! | ATTGGATCTAGTTTGAAGAC+CGG | - | Chr3:80571935-80571954 | None:intergenic | 35.0% |
! | CCTCCAAAATCTTTTTCTCA+AGG | - | Chr3:80575199-80575218 | None:intergenic | 35.0% |
! | CCTTGAGAAAAAGATTTTGG+AGG | + | Chr3:80575196-80575215 | MsG0380016216.01.T01:CDS | 35.0% |
! | CGTTGTGTTTGTTAGTACTT+TGG | - | Chr3:80571702-80571721 | None:intergenic | 35.0% |
! | GAAGAATTGAAGAAGAGTAC+CGG | - | Chr3:80571974-80571993 | None:intergenic | 35.0% |
! | GAATGTTGTTATTGAGTGGA+CGG | - | Chr3:80571663-80571682 | None:intergenic | 35.0% |
! | GTGAGAATGTTGTTATTGAG+TGG | - | Chr3:80571667-80571686 | None:intergenic | 35.0% |
!! | ATTTTGGAGGCAATTCCATT+AGG | + | Chr3:80575209-80575228 | MsG0380016216.01.T01:CDS | 35.0% |
!! | GTAACTTGTTCATGAATCAC+TGG | + | Chr3:80572383-80572402 | MsG0380016216.01.T01:intron | 35.0% |
!! | TCATCAGTTGTTGGTTTGAT+TGG | + | Chr3:80574941-80574960 | MsG0380016216.01.T01:CDS | 35.0% |
!!! | AGACAATTATTTTGAGACGG+AGG | - | Chr3:80573689-80573708 | None:intergenic | 35.0% |
!!! | ATTTTTTTAGCCAGGGTTCA+TGG | + | Chr3:80573552-80573571 | MsG0380016216.01.T01:intron | 35.0% |
!!! | CGACTATTATTTTGAGATGG+AGG | + | Chr3:80573924-80573943 | MsG0380016216.01.T01:intron | 35.0% |
!!! | GACAATTATTTTGAGACGGA+GGG | - | Chr3:80573688-80573707 | None:intergenic | 35.0% |
!!! | GTGGATGCTTGTATTTTTTC+AGG | + | Chr3:80574901-80574920 | MsG0380016216.01.T01:intron | 35.0% |
!!! | TGCTTGTATTTTTTCAGGGA+AGG | + | Chr3:80574906-80574925 | MsG0380016216.01.T01:intron | 35.0% |
AAAGCAATTGCGTTAGCGTT+AGG | + | Chr3:80572163-80572182 | MsG0380016216.01.T01:CDS | 40.0% | |
AAATAGAAGACCATGAACCC+TGG | - | Chr3:80573565-80573584 | None:intergenic | 40.0% | |
AATTATGCTGCTGCAAAAGC+AGG | + | Chr3:80574980-80574999 | MsG0380016216.01.T01:CDS | 40.0% | |
ACGGTCCATTGTTCCTAAAT+AGG | - | Chr3:80574708-80574727 | None:intergenic | 40.0% | |
ACTAATCCAGCAACTTCTTC+TGG | - | Chr3:80575331-80575350 | None:intergenic | 40.0% | |
AGAATGATCAACATCTTGGC+TGG | - | Chr3:80573529-80573548 | None:intergenic | 40.0% | |
AGTTAGTGGAGTAGTCAAGT+TGG | - | Chr3:80573811-80573830 | None:intergenic | 40.0% | |
ATGTCAGATGCAATGAATCC+TGG | - | Chr3:80575155-80575174 | None:intergenic | 40.0% | |
ATTTGTAGGCAGTAGATGCT+TGG | + | Chr3:80574307-80574326 | MsG0380016216.01.T01:intron | 40.0% | |
CAACTATGCAAGATCATCCA+AGG | + | Chr3:80573011-80573030 | MsG0380016216.01.T01:CDS | 40.0% | |
CCAATCTAATATCAGGACCA+TGG | + | Chr3:80573131-80573150 | MsG0380016216.01.T01:intron | 40.0% | |
CCATGGTCCTGATATTAGAT+TGG | - | Chr3:80573134-80573153 | None:intergenic | 40.0% | |
CCCCAAATTTCTGTCAGAAT+TGG | + | Chr3:80572581-80572600 | MsG0380016216.01.T01:intron | 40.0% | |
CTCAAGGTCATTTCCTAACT+TGG | - | Chr3:80575183-80575202 | None:intergenic | 40.0% | |
GAAATGAAGAGAAGAGAGGA+TGG | - | Chr3:80571743-80571762 | None:intergenic | 40.0% | |
GAATGATCAACATCTTGGCT+GGG | - | Chr3:80573528-80573547 | None:intergenic | 40.0% | |
GAGTATGAGGGAAGATAGAA+AGG | - | Chr3:80574395-80574414 | None:intergenic | 40.0% | |
GATTGAGAAGTGGAGAGTAA+TGG | - | Chr3:80571897-80571916 | None:intergenic | 40.0% | |
GCGAGTTAAAAAATGTGCGT+TGG | + | Chr3:80572416-80572435 | MsG0380016216.01.T01:intron | 40.0% | |
GGAGTCCTATTTAGGAACAA+TGG | + | Chr3:80574700-80574719 | MsG0380016216.01.T01:intron | 40.0% | |
TGAGAATGAAGAAGTCTCAG+TGG | + | Chr3:80574461-80574480 | MsG0380016216.01.T01:intron | 40.0% | |
TGCAAGGAATATTCTAGCAG+AGG | + | Chr3:80575027-80575046 | MsG0380016216.01.T01:CDS | 40.0% | |
TTCCACTTTCTGAACTGCTT+CGG | - | Chr3:80572101-80572120 | None:intergenic | 40.0% | |
TTTGTAGGCAGTAGATGCTT+GGG | + | Chr3:80574308-80574327 | MsG0380016216.01.T01:intron | 40.0% | |
! | AGAAGAAGTTGCTGGATTAG+TGG | + | Chr3:80575330-80575349 | MsG0380016216.01.T01:CDS | 40.0% |
! | CTGAGTGATTTTACGGTTAC+CGG | - | Chr3:80571869-80571888 | None:intergenic | 40.0% |
! | TCCTTGCAACAGATTTTGTC+AGG | - | Chr3:80575015-80575034 | None:intergenic | 40.0% |
! | TGCTTTTGCAGCAGCATAAT+TGG | - | Chr3:80574981-80575000 | None:intergenic | 40.0% |
! | TGCTTTTGGATCCTGATGTT+CGG | + | Chr3:80572957-80572976 | MsG0380016216.01.T01:intron | 40.0% |
! | TGTTAGTACTTTGGAAGCTC+CGG | - | Chr3:80571693-80571712 | None:intergenic | 40.0% |
! | TTTACAGCAGTAGTTCTGTG+TGG | + | Chr3:80574003-80574022 | MsG0380016216.01.T01:intron | 40.0% |
! | TTTTCCTCTTCATACGTAGC+AGG | + | Chr3:80572344-80572363 | MsG0380016216.01.T01:intron | 40.0% |
!! | AAAACCCTGTTTTTCTTGCC+AGG | + | Chr3:80575115-80575134 | MsG0380016216.01.T01:intron | 40.0% |
!! | AATTGCTTTTCCGATACCTC+TGG | - | Chr3:80572152-80572171 | None:intergenic | 40.0% |
!! | TGCTGGATTAGTGGAATTCT+TGG | + | Chr3:80575339-80575358 | MsG0380016216.01.T01:CDS | 40.0% |
!!! | GGTGTTTTTTCTTTCCACAC+AGG | + | Chr3:80574511-80574530 | MsG0380016216.01.T01:intron | 40.0% |
AACCGAAGCAGTTCAGAAAG+TGG | + | Chr3:80572096-80572115 | MsG0380016216.01.T01:CDS | 45.0% | |
AATCATCTGCGTCCTGTTTC+CGG | + | Chr3:80571913-80571932 | MsG0380016216.01.T01:CDS | 45.0% | |
AATGAAGAAGTCTCAGTGGC+AGG | + | Chr3:80574465-80574484 | MsG0380016216.01.T01:intron | 45.0% | |
ACAGCAATGGCTTCTCTTAC+CGG | + | Chr3:80571802-80571821 | MsG0380016216.01.T01:exon | 45.0% | |
ACGTGATGTGTAGTCTCAGT+AGG | - | Chr3:80571636-80571655 | None:intergenic | 45.0% | |
ACTTGACACTCCTTGTTCCT+GGG | - | Chr3:80573429-80573448 | None:intergenic | 45.0% | |
AGGAGAGCTACAAACCTACA+AGG | - | Chr3:80572621-80572640 | None:intergenic | 45.0% | |
AGTGCATGTAACCGAACATC+AGG | - | Chr3:80572971-80572990 | None:intergenic | 45.0% | |
AGTTCAGAAAGTGGAATCGC+CGG | + | Chr3:80572105-80572124 | MsG0380016216.01.T01:CDS | 45.0% | |
ATCATCCAAGGAAGCTGAAG+AGG | + | Chr3:80573023-80573042 | MsG0380016216.01.T01:CDS | 45.0% | |
ATCCAGCAACTTCTTCTGGT+TGG | - | Chr3:80575327-80575346 | None:intergenic | 45.0% | |
CTAGTTTGAAGACCGGAAAC+AGG | - | Chr3:80571928-80571947 | None:intergenic | 45.0% | |
GAGAAAATGGAAGAAGCCAG+AGG | - | Chr3:80571775-80571794 | None:intergenic | 45.0% | |
GCCTGACAAAATCTGTTGCA+AGG | + | Chr3:80575011-80575030 | MsG0380016216.01.T01:CDS | 45.0% | |
GCTGCAAAAGCAGGAGTAAT+TGG | + | Chr3:80574989-80575008 | MsG0380016216.01.T01:CDS | 45.0% | |
GTAGGTTTGTAGCTCTCCTT+AGG | + | Chr3:80572622-80572641 | MsG0380016216.01.T01:intron | 45.0% | |
TCTGACATGACTGCCAAGTT+AGG | + | Chr3:80575167-80575186 | MsG0380016216.01.T01:CDS | 45.0% | |
TGACAACCAAACTGAGCCTA+AGG | - | Chr3:80572641-80572660 | None:intergenic | 45.0% | |
TGAGAAGTGGAGAGTAATGG+CGG | - | Chr3:80571894-80571913 | None:intergenic | 45.0% | |
TGAGCTGTGAAGCTTAGCAA+TGG | - | Chr3:80571613-80571632 | None:intergenic | 45.0% | |
TTGTAGGCAGTAGATGCTTG+GGG | + | Chr3:80574309-80574328 | MsG0380016216.01.T01:intron | 45.0% | |
! | AAGGCAGTTTTCTACCTCCT+TGG | - | Chr3:80573052-80573071 | None:intergenic | 45.0% |
! | AGTGATTTTACGGTTACCGG+CGG | - | Chr3:80571866-80571885 | None:intergenic | 45.0% |
! | GGCGGATCTGAGTGATTTTA+CGG | - | Chr3:80571876-80571895 | None:intergenic | 45.0% |
! | TGTAGATTGAAGCACTCGGT+GGG | + | Chr3:80574156-80574175 | MsG0380016216.01.T01:intron | 45.0% |
! | TTGTAGATTGAAGCACTCGG+TGG | + | Chr3:80574155-80574174 | MsG0380016216.01.T01:intron | 45.0% |
!! | GTTGGTTTGATTGGCAATGC+TGG | + | Chr3:80574950-80574969 | MsG0380016216.01.T01:CDS | 45.0% |
AAGCTGCCAGCTACATCACT+GGG | + | Chr3:80575371-80575390 | MsG0380016216.01.T01:CDS | 50.0% | |
AGCTCTCCTTAGGCTCAGTT+TGG | + | Chr3:80572632-80572651 | MsG0380016216.01.T01:intron | 50.0% | |
AGCTGAAGAGGTTTCCAAGG+AGG | + | Chr3:80573035-80573054 | MsG0380016216.01.T01:CDS | 50.0% | |
ATTGTTACCGGAGCTTCCAG+AGG | + | Chr3:80572133-80572152 | MsG0380016216.01.T01:CDS | 50.0% | |
CAACATCTTGGCTGGGAATC+AGG | - | Chr3:80573521-80573540 | None:intergenic | 50.0% | |
CACTTGACACTCCTTGTTCC+TGG | - | Chr3:80573430-80573449 | None:intergenic | 50.0% | |
CAGGTTAATGCTGTTGCTCC+AGG | + | Chr3:80575134-80575153 | MsG0380016216.01.T01:intron | 50.0% | |
CGTTAGGTAAGCAGGTTGCA+AGG | + | Chr3:80572179-80572198 | MsG0380016216.01.T01:CDS | 50.0% | |
CTGGAGCAACAGCATTAACC+TGG | - | Chr3:80575136-80575155 | None:intergenic | 50.0% | |
CTTGACACTCCTTGTTCCTG+GGG | - | Chr3:80573428-80573447 | None:intergenic | 50.0% | |
GCTCCGGTAACAATCACAAC+CGG | - | Chr3:80572127-80572146 | None:intergenic | 50.0% | |
GGAAACCTCTTCAGCTTCCT+TGG | - | Chr3:80573031-80573050 | None:intergenic | 50.0% | |
GGAAGCTGAAGAGGTTTCCA+AGG | + | Chr3:80573032-80573051 | MsG0380016216.01.T01:CDS | 50.0% | |
GGACGCAGATGATTGAGAAG+TGG | - | Chr3:80571907-80571926 | None:intergenic | 50.0% | |
TGCGTTAGCGTTAGGTAAGC+AGG | + | Chr3:80572171-80572190 | MsG0380016216.01.T01:CDS | 50.0% | |
TTGACACTCCTTGTTCCTGG+GGG | - | Chr3:80573427-80573446 | None:intergenic | 50.0% | |
! | AAGTTTTCCCCCCAGGAACA+AGG | + | Chr3:80573416-80573435 | MsG0380016216.01.T01:intron | 50.0% |
! | ATTCGAGAACGCGCGTTTTC+AGG | + | Chr3:80572037-80572056 | MsG0380016216.01.T01:intron | 50.0% |
! | CTTCGATAAGTTTTCCCCCC+AGG | + | Chr3:80573409-80573428 | MsG0380016216.01.T01:intron | 50.0% |
! | GGGCAAGCTCTAACATATGG+TGG | + | Chr3:80574176-80574195 | MsG0380016216.01.T01:CDS | 50.0% |
! | GGTGGGCAAGCTCTAACATA+TGG | + | Chr3:80574173-80574192 | MsG0380016216.01.T01:CDS | 50.0% |
! | TCGCCGGTTGTGATTGTTAC+CGG | + | Chr3:80572121-80572140 | MsG0380016216.01.T01:CDS | 50.0% |
!!! | GTTTTCAGGTGTGAGAGCAC+AGG | + | Chr3:80572051-80572070 | MsG0380016216.01.T01:intron | 50.0% |
AGCACAGGTTGCTACACTGG+CGG | + | Chr3:80572066-80572085 | MsG0380016216.01.T01:CDS | 55.0% | |
CAAGCTGCCAGCTACATCAC+TGG | + | Chr3:80575370-80575389 | MsG0380016216.01.T01:CDS | 55.0% | |
GAAGAAGTCTCAGTGGCAGG+AGG | + | Chr3:80574468-80574487 | MsG0380016216.01.T01:intron | 55.0% | |
GAGAGCGACGCAATTGGATC+CGG | - | Chr3:80571824-80571843 | None:intergenic | 55.0% | |
GGAGCCTGCTACGTATGAAG+AGG | - | Chr3:80572351-80572370 | None:intergenic | 55.0% | |
GGCCAACCAGAAGAAGTTGC+TGG | + | Chr3:80575322-80575341 | MsG0380016216.01.T01:CDS | 55.0% | |
TGACACTCCTTGTTCCTGGG+GGG | - | Chr3:80573426-80573445 | None:intergenic | 55.0% | |
! | ACCGGAGCTTCCAGAGGTAT+CGG | + | Chr3:80572139-80572158 | MsG0380016216.01.T01:CDS | 55.0% |
! | GAGAGCACAGGTTGCTACAC+TGG | + | Chr3:80572063-80572082 | MsG0380016216.01.T01:CDS | 55.0% |
! | GATTTTACGGTTACCGGCGG+CGG | - | Chr3:80571863-80571882 | None:intergenic | 55.0% |
! | TCCGATACCTCTGGAAGCTC+CGG | - | Chr3:80572143-80572162 | None:intergenic | 55.0% |
GACCTGCCCAGTGATGTAGC+TGG | - | Chr3:80575380-80575399 | None:intergenic | 60.0% | |
GGAACGGAGAGCGACGCAAT+TGG | - | Chr3:80571830-80571849 | None:intergenic | 60.0% | |
TGCCAGCTACATCACTGGGC+AGG | + | Chr3:80575375-80575394 | MsG0380016216.01.T01:CDS | 60.0% | |
GTTACCGGCGGCGGCAAAAG+TGG | - | Chr3:80571854-80571873 | None:intergenic | 65.0% | |
! | CGGCGGCAAAAGTGGCGGAA+CGG | - | Chr3:80571846-80571865 | None:intergenic | 65.0% |
! | GGTTGCTACACTGGCGGACG+CGG | + | Chr3:80572072-80572091 | MsG0380016216.01.T01:CDS | 65.0% |
ACCGGCGGCGGCAAAAGTGG+CGG | - | Chr3:80571851-80571870 | None:intergenic | 70.0% | |
!!! | TCCGCCACTTTTGCCGCCGC+CGG | + | Chr3:80571847-80571866 | MsG0380016216.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 80571586 | 80575414 | 80571586 | ID=MsG0380016216.01;Name=MsG0380016216.01 |
Chr3 | mRNA | 80571586 | 80575414 | 80571586 | ID=MsG0380016216.01.T01;Parent=MsG0380016216.01;Name=MsG0380016216.01.T01;_AED=0.44;_eAED=0.54;_QI=222|0.55|0.5|1|0.55|0.6|10|0|365 |
Chr3 | exon | 80571586 | 80571973 | 80571586 | ID=MsG0380016216.01.T01:exon:32821;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80572059 | 80572217 | 80572059 | ID=MsG0380016216.01.T01:exon:32822;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80572844 | 80572911 | 80572844 | ID=MsG0380016216.01.T01:exon:32823;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80573003 | 80573056 | 80573003 | ID=MsG0380016216.01.T01:exon:32824;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80574161 | 80574241 | 80574161 | ID=MsG0380016216.01.T01:exon:32825;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80574315 | 80574479 | 80574315 | ID=MsG0380016216.01.T01:exon:32826;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80574621 | 80574696 | 80574621 | ID=MsG0380016216.01.T01:exon:32827;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80574923 | 80575056 | 80574923 | ID=MsG0380016216.01.T01:exon:32828;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80575137 | 80575230 | 80575137 | ID=MsG0380016216.01.T01:exon:32829;Parent=MsG0380016216.01.T01 |
Chr3 | exon | 80575314 | 80575414 | 80575314 | ID=MsG0380016216.01.T01:exon:32830;Parent=MsG0380016216.01.T01 |
Chr3 | five_prime_UTR | 80571586 | 80571807 | 80571586 | ID=MsG0380016216.01.T01:five_prime_utr;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80571808 | 80571973 | 80571808 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80572059 | 80572217 | 80572059 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80572844 | 80572911 | 80572844 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80573003 | 80573056 | 80573003 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80574161 | 80574241 | 80574161 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80574315 | 80574479 | 80574315 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80574621 | 80574696 | 80574621 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80574923 | 80575056 | 80574923 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80575137 | 80575230 | 80575137 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Chr3 | CDS | 80575314 | 80575414 | 80575314 | ID=MsG0380016216.01.T01:cds;Parent=MsG0380016216.01.T01 |
Gene Sequence |
Protein sequence |