AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000436.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000436.01.T01 MTR_1g015980 93.896 557 30 2 1 554 1 556 0.0 1083
MsG0180000436.01.T01 MTR_1g015970 79.496 556 102 7 1 552 1 548 0.0 904
MsG0180000436.01.T01 MTR_1g015910 70.111 542 148 9 16 552 42 574 0.0 771
MsG0180000436.01.T01 MTR_1g015910 70.115 522 145 8 33 552 19 531 0.0 744
MsG0180000436.01.T01 MTR_1g015940 73.904 456 85 7 38 492 48 470 0.0 664
MsG0180000436.01.T01 MTR_7g105050 49.631 542 259 8 13 549 41 573 0.0 536
MsG0180000436.01.T01 MTR_1g059700 49.248 532 258 8 19 547 43 565 0.0 533
MsG0180000436.01.T01 MTR_5g066380 49.362 549 257 13 14 549 33 573 0.0 532
MsG0180000436.01.T01 MTR_2g099950 49.259 540 258 10 16 550 44 572 2.51e-179 518
MsG0180000436.01.T01 MTR_8g017410 48.897 544 259 11 14 549 42 574 3.77e-174 504
MsG0180000436.01.T01 MTR_2g099950 48.362 519 252 10 36 549 1 508 2.23e-166 482
MsG0180000436.01.T01 MTR_8g017410 48.467 522 253 10 33 549 18 528 2.66e-164 478
MsG0180000436.01.T01 MTR_4g101630 43.820 534 281 13 20 547 112 632 6.77e-138 414
MsG0180000436.01.T01 MTR_4g101630 43.436 518 277 12 33 547 16 520 1.52e-132 397
MsG0180000436.01.T01 MTR_3g008530 41.386 534 291 13 20 547 104 621 9.91e-129 390
MsG0180000436.01.T01 MTR_8g017410 50.133 375 171 9 14 380 42 408 1.10e-122 367
MsG0180000436.01.T01 MTR_1g015920 55.294 85 33 3 251 335 34 113 1.63e-20 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000436.01.T01 AT3G13790 52.390 544 236 12 17 549 49 580 0.0 538
MsG0180000436.01.T01 AT3G13790 52.102 547 236 13 17 549 49 583 0.0 533
MsG0180000436.01.T01 AT1G55120 49.457 552 258 10 14 552 33 576 0.0 529
MsG0180000436.01.T01 AT5G11920 50.460 543 251 11 20 554 17 549 0.0 528
MsG0180000436.01.T01 AT3G13784 49.634 546 256 11 10 547 34 568 5.62e-179 516
MsG0180000436.01.T01 AT3G13784 49.362 549 256 12 10 547 34 571 8.94e-177 511
MsG0180000436.01.T01 AT3G13784 49.362 549 256 12 10 547 34 571 1.31e-176 511
MsG0180000436.01.T01 AT5G11920 50.382 524 245 10 36 554 1 514 1.03e-175 506
MsG0180000436.01.T01 AT1G55120 48.972 535 255 9 28 552 10 536 3.69e-174 504
MsG0180000436.01.T01 AT3G13790 51.429 525 232 12 36 549 1 513 6.10e-174 502
MsG0180000436.01.T01 AT3G13790 51.429 525 232 12 36 549 1 513 6.10e-174 502
MsG0180000436.01.T01 AT3G13790 51.429 525 232 12 36 549 1 513 6.10e-174 502
MsG0180000436.01.T01 AT1G55120 48.960 529 252 9 34 552 17 537 6.23e-173 501
MsG0180000436.01.T01 AT1G55120 48.776 531 254 9 32 552 39 561 7.43e-173 501
MsG0180000436.01.T01 AT3G13784 48.566 523 251 10 33 547 6 518 3.50e-166 482
MsG0180000436.01.T01 AT2G36190 46.863 542 266 11 19 546 49 582 8.83e-161 471
MsG0180000436.01.T01 AT3G52600 46.225 543 269 12 19 546 47 581 3.71e-158 464
MsG0180000436.01.T01 AT3G52600 46.198 526 263 11 33 546 10 527 3.74e-153 449
MsG0180000436.01.T01 AT3G52600 46.080 523 262 11 36 546 1 515 1.39e-151 445
MsG0180000436.01.T01 AT5G11920 51.515 396 177 9 20 407 17 405 5.67e-136 402
MsG0180000436.01.T01 AT1G12240 40.074 539 301 15 20 547 121 648 6.13e-125 381
MsG0180000436.01.T01 AT1G62660 38.848 538 308 14 20 547 106 632 5.63e-117 360
MsG0180000436.01.T01 AT1G62660 38.314 522 304 13 33 547 24 534 1.81e-111 343
MsG0180000436.01.T01 AT1G62660 36.853 464 278 11 90 547 12 466 8.54e-90 285
MsG0180000436.01.T01 AT1G62660 36.853 464 278 11 90 547 12 466 8.54e-90 285

Find 113 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCAATGCCAGCTTCTT+TGG 0.186333 1:-5998118 None:intergenic
AGTCCAATTTATGAGATCTT+TGG 0.257084 1:-5997380 None:intergenic
TATCCAAAGATCTCATAAAT+TGG 0.262636 1:+5997377 MsG0180000436.01.T01:CDS
TCAAATATAGTTGCATATAT+TGG 0.275204 1:-5999086 None:intergenic
AAGTAGAGTTTATCCTTTAC+TGG 0.275834 1:+5999289 MsG0180000436.01.T01:CDS
CGGTCCATTATTGAGAGTTT+TGG 0.286313 1:+5999242 MsG0180000436.01.T01:CDS
CACCTACTTCAACTCCATTA+GGG 0.298233 1:-5997624 None:intergenic
TCACCTACTTCAACTCCATT+AGG 0.301357 1:-5997625 None:intergenic
AACATTTGGTCATGAGAAAA+TGG 0.305427 1:+5997339 MsG0180000436.01.T01:CDS
CCTTTGATGGCTGCCCCTAA+TGG 0.309701 1:+5997610 MsG0180000436.01.T01:CDS
CTAAGAACAGGAGAATATTA+TGG 0.312772 1:+5998073 MsG0180000436.01.T01:CDS
GGATCAACTCTTGAAGTAAA+AGG 0.319526 1:+5998385 MsG0180000436.01.T01:CDS
ATCTCCAAAACTCTCAATAA+TGG 0.325601 1:-5999246 None:intergenic
AGACGATTCCAAGGAAGTTT+TGG 0.334070 1:+5998263 MsG0180000436.01.T01:intron
AGTCATGATTACTACTTCAT+TGG 0.345160 1:+5997928 MsG0180000436.01.T01:CDS
GGCAAGGAAAAGATGGAAAA+TGG 0.346822 1:+5997671 MsG0180000436.01.T01:CDS
TTTATCCATTCTATTAACTT+AGG 0.351883 1:-5997574 None:intergenic
GTGTATATCAATAGCACAAA+TGG 0.353644 1:+5997838 MsG0180000436.01.T01:CDS
TGACCAAATGTTGCTCCATC+AGG 0.359718 1:-5997328 None:intergenic
GCATCGAGAAAAGGCATGAT+AGG 0.363674 1:+5998793 MsG0180000436.01.T01:CDS
TCTCTCCAGTGATATTGATT+TGG 0.364407 1:-5998351 None:intergenic
TGTTCAAAATTGATGTTGTT+TGG 0.368565 1:-5996895 None:intergenic
TTTCCTTGCCATGCAGTTGA+AGG 0.383252 1:-5997658 None:intergenic
TTATCCATTCTATTAACTTA+GGG 0.388295 1:-5997573 None:intergenic
CATCACCGACTCTATATATT+CGG 0.390225 1:-5998876 None:intergenic
GGAAAATGGAGAGTACTAAT+AGG 0.392615 1:+5997685 MsG0180000436.01.T01:CDS
TCTGTTGCATAGAATGGATT+AGG 0.392944 1:-5997778 None:intergenic
ACACCCTCAAAATCCTTTGA+TGG 0.394680 1:+5997597 MsG0180000436.01.T01:CDS
GGTGAAACAAGTTGCTTCTC+AGG 0.395225 1:+5997436 MsG0180000436.01.T01:CDS
GTTATATATATGTTGTATAC+AGG 0.398209 1:+5997490 MsG0180000436.01.T01:CDS
TCAGGACCAATGTACTATAA+AGG 0.400201 1:+5997277 MsG0180000436.01.T01:intron
TGGGGTGGACTATACATCTA+TGG 0.402847 1:+5997858 MsG0180000436.01.T01:CDS
ACCTCAGCACTTTGTAGATC+AGG 0.410153 1:-5998721 None:intergenic
TCATCAAGCCAAAACTTCCT+TGG 0.410725 1:-5998271 None:intergenic
AACCCTGATGGAGCAACATT+TGG 0.424759 1:+5997325 MsG0180000436.01.T01:CDS
GTATCATCTGTTGCATAGAA+TGG 0.424869 1:-5997784 None:intergenic
AAGGAATTGAGATTTGACTA+TGG 0.432525 1:+5998015 MsG0180000436.01.T01:CDS
AAGAGGATGGGCTGGTCTAC+AGG 0.433694 1:+5998137 MsG0180000436.01.T01:CDS
TGTATATCAATAGCACAAAT+GGG 0.435733 1:+5997839 MsG0180000436.01.T01:CDS
TAAGAACAGGAGAATATTAT+GGG 0.436477 1:+5998074 MsG0180000436.01.T01:CDS
GTATACAACATATATATAAC+AGG 0.438629 1:-5997487 None:intergenic
AAAGGCATGATAGGGCCATT+TGG 0.439504 1:+5998802 MsG0180000436.01.T01:CDS
GGTTATGTTGGTAAAAGAAA+TGG 0.439820 1:-5997306 None:intergenic
GTCATGATTACTACTTCATT+GGG 0.443627 1:+5997929 MsG0180000436.01.T01:CDS
TTGAACAACCATACAGAACT+TGG 0.450136 1:+5996911 MsG0180000436.01.T01:CDS
ATATGTATCTGATTCTGATC+AGG 0.452353 1:+5997954 MsG0180000436.01.T01:CDS
AAAAGGTATCACTGCATCTC+AGG 0.460368 1:+5998402 MsG0180000436.01.T01:CDS
TTCCTTGCCATGCAGTTGAA+GGG 0.466764 1:-5997657 None:intergenic
TATATAACAGGTTGTTCTCC+AGG 0.471450 1:-5997475 None:intergenic
TTAGGGTCTGATAGATCCTT+CGG 0.474973 1:-5997556 None:intergenic
GGCATTGAAAGAGGATGGGC+TGG 0.486537 1:+5998129 MsG0180000436.01.T01:CDS
AACGATTTCACTAAGAAGCT+TGG 0.486761 1:+5999127 MsG0180000436.01.T01:CDS
TCAAAATTGATGTTGTTTGG+TGG 0.493127 1:-5996892 None:intergenic
ATATTGTAGTCCTCTCTGTC+TGG 0.493142 1:-5998849 None:intergenic
ACTGCATGGCAAGGAAAAGA+TGG 0.501989 1:+5997664 MsG0180000436.01.T01:CDS
TACCGGTGTTTGTGAATGTC+CGG 0.502091 1:+5997804 MsG0180000436.01.T01:CDS
GGCTCAGCCACAATAGTCCC+TGG 0.506754 1:+5997457 MsG0180000436.01.T01:CDS
TACAACCAAATCAATATCAC+TGG 0.507291 1:+5998346 MsG0180000436.01.T01:CDS
GAACAATATGCATCGAGAAA+AGG 0.508826 1:+5998784 MsG0180000436.01.T01:CDS
CTTCAAGAGTTGATCCACTT+AGG 0.512535 1:-5998378 None:intergenic
CAGACCCTAAGTTAATAGAA+TGG 0.517802 1:+5997569 MsG0180000436.01.T01:CDS
TCTTTCTCTATTGCCAGTAA+AGG 0.518191 1:-5999302 None:intergenic
GCTAAAGCTTGCAAACCAAA+TGG 0.522260 1:-5998817 None:intergenic
TCTTGAGGATCAACTTCACT+TGG 0.527016 1:-5998751 None:intergenic
ACAGGAGAATATTATGGGCA+TGG 0.527271 1:+5998079 MsG0180000436.01.T01:CDS
GTACTAATAGGTGCTCGAAA+TGG 0.529822 1:+5997697 MsG0180000436.01.T01:CDS
AAAATTTACTGGAACTTGGA+AGG 0.536158 1:+5997996 MsG0180000436.01.T01:CDS
TGGTCATGAGAAAATGGTAT+GGG 0.536881 1:+5997345 MsG0180000436.01.T01:CDS
AAGCTGGCATTGAAAGAGGA+TGG 0.537579 1:+5998124 MsG0180000436.01.T01:CDS
GAGTCTGACACCAAAGAAGC+TGG 0.538308 1:+5998108 MsG0180000436.01.T01:CDS
AAAGAAGCTGGCATTGAAAG+AGG 0.539611 1:+5998120 MsG0180000436.01.T01:CDS
TTGCTCCATCAGGGTTATGT+TGG 0.543089 1:-5997318 None:intergenic
TGTTCTTTACAGAGTTCTTG+AGG 0.543126 1:-5998766 None:intergenic
TTGGTCATGAGAAAATGGTA+TGG 0.544520 1:+5997344 MsG0180000436.01.T01:CDS
GTCTTCGTCTTCAATGAGGA+AGG 0.548214 1:+5999052 MsG0180000436.01.T01:CDS
AGCTGGCATTGAAAGAGGAT+GGG 0.548618 1:+5998125 MsG0180000436.01.T01:CDS
CCATTAGGGGCAGCCATCAA+AGG 0.550250 1:-5997610 None:intergenic
TTATCTCAGAACTAAATGCT+TGG 0.550899 1:+5999366 MsG0180000436.01.T01:CDS
CAGGAGAATATTATGGGCAT+GGG 0.553225 1:+5998080 MsG0180000436.01.T01:CDS
CAAAACTCTCAATAATGGAC+CGG 0.557556 1:-5999241 None:intergenic
CTTGTTTCACCAGCACAAGT+TGG 0.558429 1:-5997424 None:intergenic
GCTATTGAACCAACTTGTGC+TGG 0.561911 1:+5997415 MsG0180000436.01.T01:CDS
TTGTTCTCCAGGGACTATTG+TGG 0.564134 1:-5997464 None:intergenic
TGATGATAAGTGACCAGACC+AGG 0.572252 1:+5998911 MsG0180000436.01.T01:CDS
TAATATCCTTTATAGTACAT+TGG 0.574079 1:-5997283 None:intergenic
ATGTTAATATGCAGATTGAC+CGG 0.576802 1:+5999222 MsG0180000436.01.T01:intron
AGCTATTCTTTACAGAAGTG+AGG 0.576812 1:+5997732 MsG0180000436.01.T01:CDS
GGTGCTCGAAATGGCGAACA+AGG 0.576883 1:+5997706 MsG0180000436.01.T01:CDS
TTCTATGCAACAGATGATAC+CGG 0.578846 1:+5997787 MsG0180000436.01.T01:CDS
GACCCTTCAACTGCATGGCA+AGG 0.579815 1:+5997655 MsG0180000436.01.T01:CDS
AGTTGTTCTAACTCTTCGAC+TGG 0.580278 1:-5998319 None:intergenic
GTTCTGAGATAACCACACTC+TGG 0.583579 1:-5999355 None:intergenic
CATCGAGAAAAGGCATGATA+GGG 0.590083 1:+5998794 MsG0180000436.01.T01:CDS
GACCAAATGTTGCTCCATCA+GGG 0.596978 1:-5997327 None:intergenic
AAGTGGTACCAAGTTCTGTA+TGG 0.602886 1:-5996919 None:intergenic
ACCTACTTCAACTCCATTAG+GGG 0.603817 1:-5997623 None:intergenic
ATATAACAGGTTGTTCTCCA+GGG 0.607179 1:-5997474 None:intergenic
CTACAATGTAGACGATTCCA+AGG 0.611239 1:+5998254 MsG0180000436.01.T01:intron
GCCCCTAATGGAGTTGAAGT+AGG 0.612042 1:+5997622 MsG0180000436.01.T01:CDS
TTTGTGCTATTGATATACAC+AGG 0.613201 1:-5997835 None:intergenic
TCAGAGACCCTTCAACTGCA+TGG 0.615717 1:+5997650 MsG0180000436.01.T01:CDS
ATCCGGACATTCACAAACAC+CGG 0.616013 1:-5997806 None:intergenic
ACAGGTCTTCGTCTTCAATG+AGG 0.617295 1:+5999048 MsG0180000436.01.T01:intron
ACTGGAGAGACAGTCCTAAG+TGG 0.620424 1:+5998364 MsG0180000436.01.T01:CDS
TATCAATAGCACAAATGGGG+TGG 0.620539 1:+5997843 MsG0180000436.01.T01:CDS
GCGGGAAGCGATTACTGCAG+TGG 0.625179 1:+5998296 MsG0180000436.01.T01:CDS
TCTTCGTCTTCAATGAGGAA+GGG 0.625856 1:+5999053 MsG0180000436.01.T01:CDS
TCTTTCCGAATATATAGAGT+CGG 0.654185 1:+5998871 MsG0180000436.01.T01:CDS
CAATGATGGAAGCCAGAGTG+TGG 0.660271 1:+5999343 MsG0180000436.01.T01:CDS
ACCTGATCTACAAAGTGCTG+AGG 0.663187 1:+5998720 MsG0180000436.01.T01:CDS
CATCAATAGACCAGACAGAG+AGG 0.676020 1:+5998839 MsG0180000436.01.T01:CDS
GGTCATGAGAAAATGGTATG+GGG 0.676642 1:+5997346 MsG0180000436.01.T01:CDS
GTATATCAATAGCACAAATG+GGG 0.685553 1:+5997840 MsG0180000436.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATCTACTTTTATAATTTA+CGG + Chr1:5997018-5997037 MsG0180000436.01.T01:intron 15.0%
!! ATTCTTGATGAAAAATTTAC+TGG + Chr1:5997985-5998004 MsG0180000436.01.T01:CDS 20.0%
!! GTATACAACATATATATAAC+AGG - Chr1:5997490-5997509 None:intergenic 20.0%
!! GTTATATATATGTTGTATAC+AGG + Chr1:5997490-5997509 MsG0180000436.01.T01:CDS 20.0%
!! TAATATCCTTTATAGTACAT+TGG - Chr1:5997286-5997305 None:intergenic 20.0%
!! TATAAGATTTGATGAATGAT+TGG + Chr1:5998224-5998243 MsG0180000436.01.T01:intron 20.0%
!! TCAAATATAGTTGCATATAT+TGG - Chr1:5999089-5999108 None:intergenic 20.0%
!! TTATCCATTCTATTAACTTA+GGG - Chr1:5997576-5997595 None:intergenic 20.0%
!! TTTATCCATTCTATTAACTT+AGG - Chr1:5997577-5997596 None:intergenic 20.0%
!!! AAAGTAATGGTTTTGAATTT+TGG - Chr1:5997096-5997115 None:intergenic 20.0%
!!! ATTTCTAATTCAACTTTTCA+AGG + Chr1:5998672-5998691 MsG0180000436.01.T01:intron 20.0%
! AGTACAGTAAAAAAATAACC+TGG - Chr1:5998932-5998951 None:intergenic 25.0%
! ATATACACAGGAAAAAAATC+CGG - Chr1:5997826-5997845 None:intergenic 25.0%
! ATGAAAAATTTACTGGAACT+TGG + Chr1:5997992-5998011 MsG0180000436.01.T01:CDS 25.0%
! CATCTCATATATATCAAACT+TGG - Chr1:5999205-5999224 None:intergenic 25.0%
! TAAGAACAGGAGAATATTAT+GGG + Chr1:5998074-5998093 MsG0180000436.01.T01:CDS 25.0%
! TAGTCATATGTATAATGTTG+AGG - Chr1:5997185-5997204 None:intergenic 25.0%
! TATCCAAAGATCTCATAAAT+TGG + Chr1:5997377-5997396 MsG0180000436.01.T01:CDS 25.0%
! TCAACATTATACATATGACT+AGG + Chr1:5997184-5997203 MsG0180000436.01.T01:intron 25.0%
! TCATTAGACCAAATTTCATA+TGG - Chr1:5997236-5997255 None:intergenic 25.0%
! TGTATATCAATAGCACAAAT+GGG + Chr1:5997839-5997858 MsG0180000436.01.T01:CDS 25.0%
! TGTTCAAAATTGATGTTGTT+TGG - Chr1:5996898-5996917 None:intergenic 25.0%
!! ACCATTCATCCAATTATTTT+TGG - Chr1:5996950-5996969 None:intergenic 25.0%
!! CATCTTTTTGTATTCAATGA+TGG + Chr1:5999329-5999348 MsG0180000436.01.T01:CDS 25.0%
!! GTATAATATTTTTCTGTGTC+AGG + Chr1:5997259-5997278 MsG0180000436.01.T01:intron 25.0%
!! TTATGTTGTGTACATTTTAC+AGG + Chr1:5999030-5999049 MsG0180000436.01.T01:intron 25.0%
!!! CCATTCATCCAATTATTTTT+GGG - Chr1:5996949-5996968 None:intergenic 25.0%
!!! TTGCATATATTGGTTTTTCA+AGG - Chr1:5999079-5999098 None:intergenic 25.0%
AAAAGTAGATAGACAATGAG+TGG - Chr1:5996976-5996995 None:intergenic 30.0%
AAAATTTACTGGAACTTGGA+AGG + Chr1:5997996-5998015 MsG0180000436.01.T01:CDS 30.0%
AACATTTGGTCATGAGAAAA+TGG + Chr1:5997339-5997358 MsG0180000436.01.T01:CDS 30.0%
AAGGAATTGAGATTTGACTA+TGG + Chr1:5998015-5998034 MsG0180000436.01.T01:CDS 30.0%
AAGTAGAGTTTATCCTTTAC+TGG + Chr1:5999289-5999308 MsG0180000436.01.T01:CDS 30.0%
ACTTTCAGCCCAAAAATAAT+TGG + Chr1:5996938-5996957 MsG0180000436.01.T01:CDS 30.0%
AGTAAAAAAATAACCTGGTC+TGG - Chr1:5998927-5998946 None:intergenic 30.0%
AGTCATGATTACTACTTCAT+TGG + Chr1:5997928-5997947 MsG0180000436.01.T01:CDS 30.0%
AGTCCAATTTATGAGATCTT+TGG - Chr1:5997383-5997402 None:intergenic 30.0%
ATATGTATCTGATTCTGATC+AGG + Chr1:5997954-5997973 MsG0180000436.01.T01:CDS 30.0%
ATCTCCAAAACTCTCAATAA+TGG - Chr1:5999249-5999268 None:intergenic 30.0%
ATGTTAATATGCAGATTGAC+CGG + Chr1:5999222-5999241 MsG0180000436.01.T01:intron 30.0%
ATTTGTGTCTACTTAGTACT+TGG - Chr1:5998492-5998511 None:intergenic 30.0%
CCCAAAAATAATTGGATGAA+TGG + Chr1:5996946-5996965 MsG0180000436.01.T01:CDS 30.0%
CTAAGAACAGGAGAATATTA+TGG + Chr1:5998073-5998092 MsG0180000436.01.T01:CDS 30.0%
GCATAGCTAAAAATTGAACT+TGG - Chr1:5997537-5997556 None:intergenic 30.0%
GTATATCAATAGCACAAATG+GGG + Chr1:5997840-5997859 MsG0180000436.01.T01:CDS 30.0%
GTCATGATTACTACTTCATT+GGG + Chr1:5997929-5997948 MsG0180000436.01.T01:CDS 30.0%
GTGTATATCAATAGCACAAA+TGG + Chr1:5997838-5997857 MsG0180000436.01.T01:CDS 30.0%
TACAACCAAATCAATATCAC+TGG + Chr1:5998346-5998365 MsG0180000436.01.T01:CDS 30.0%
TCTTTCCGAATATATAGAGT+CGG + Chr1:5998871-5998890 MsG0180000436.01.T01:CDS 30.0%
TTATCTCAGAACTAAATGCT+TGG + Chr1:5999366-5999385 MsG0180000436.01.T01:CDS 30.0%
! GAAGTGAGGATTTTGTTAAT+TGG + Chr1:5997746-5997765 MsG0180000436.01.T01:CDS 30.0%
! GGTTATGTTGGTAAAAGAAA+TGG - Chr1:5997309-5997328 None:intergenic 30.0%
! TCAAAATTGATGTTGTTTGG+TGG - Chr1:5996895-5996914 None:intergenic 30.0%
! TTTGTGCTATTGATATACAC+AGG - Chr1:5997838-5997857 None:intergenic 30.0%
!! AGTGAAATCGTTTTGATGTT+GGG - Chr1:5999119-5999138 None:intergenic 30.0%
!! TAGTGAAATCGTTTTGATGT+TGG - Chr1:5999120-5999139 None:intergenic 30.0%
!! TTTTTGACTATGCTAAGAAC+AGG + Chr1:5998061-5998080 MsG0180000436.01.T01:CDS 30.0%
!!! AATTATTTTTGGGCTGAAAG+TGG - Chr1:5996939-5996958 None:intergenic 30.0%
!!! ATTATTGAGAGTTTTGGAGA+TGG + Chr1:5999248-5999267 MsG0180000436.01.T01:CDS 30.0%
AACGATTTCACTAAGAAGCT+TGG + Chr1:5999127-5999146 MsG0180000436.01.T01:CDS 35.0%
AGAGTATGAAGCATACCATT+AGG - Chr1:5997131-5997150 None:intergenic 35.0%
AGCTATTCTTTACAGAAGTG+AGG + Chr1:5997732-5997751 MsG0180000436.01.T01:CDS 35.0%
AGGCCATCAATCTAAATTGT+CGG + Chr1:5998599-5998618 MsG0180000436.01.T01:intron 35.0%
ATATAACAGGTTGTTCTCCA+GGG - Chr1:5997477-5997496 None:intergenic 35.0%
CAGACCCTAAGTTAATAGAA+TGG + Chr1:5997569-5997588 MsG0180000436.01.T01:CDS 35.0%
GAACAATATGCATCGAGAAA+AGG + Chr1:5998784-5998803 MsG0180000436.01.T01:CDS 35.0%
GACCAAATTTCATATGGAAC+AGG - Chr1:5997230-5997249 None:intergenic 35.0%
GATCTGCATGATGAAAGTAA+TGG - Chr1:5997109-5997128 None:intergenic 35.0%
GCATAACGAAGCTAGAATAT+AGG - Chr1:5998166-5998185 None:intergenic 35.0%
GGATCAACTCTTGAAGTAAA+AGG + Chr1:5998385-5998404 MsG0180000436.01.T01:CDS 35.0%
GTATCATCTGTTGCATAGAA+TGG - Chr1:5997787-5997806 None:intergenic 35.0%
GTCCTGTTCCATATGAAATT+TGG + Chr1:5997225-5997244 MsG0180000436.01.T01:intron 35.0%
TATATAACAGGTTGTTCTCC+AGG - Chr1:5997478-5997497 None:intergenic 35.0%
TCACCGACAATTTAGATTGA+TGG - Chr1:5998605-5998624 None:intergenic 35.0%
TCAGGACCAATGTACTATAA+AGG + Chr1:5997277-5997296 MsG0180000436.01.T01:intron 35.0%
TCTTTCTCTATTGCCAGTAA+AGG - Chr1:5999305-5999324 None:intergenic 35.0%
TGGTCATGAGAAAATGGTAT+GGG + Chr1:5997345-5997364 MsG0180000436.01.T01:CDS 35.0%
TGTTCTTTACAGAGTTCTTG+AGG - Chr1:5998769-5998788 None:intergenic 35.0%
TTCTATGCAACAGATGATAC+CGG + Chr1:5997787-5997806 MsG0180000436.01.T01:CDS 35.0%
TTGAACAACCATACAGAACT+TGG + Chr1:5996911-5996930 MsG0180000436.01.T01:CDS 35.0%
TTGGTCATGAGAAAATGGTA+TGG + Chr1:5997344-5997363 MsG0180000436.01.T01:CDS 35.0%
TTTCATCATGCAGATCCTAA+TGG + Chr1:5997113-5997132 MsG0180000436.01.T01:intron 35.0%
! TCTCTCCAGTGATATTGATT+TGG - Chr1:5998354-5998373 None:intergenic 35.0%
! TCTGTTGCATAGAATGGATT+AGG - Chr1:5997781-5997800 None:intergenic 35.0%
! TTTTACCAACATAACCCTGA+TGG + Chr1:5997313-5997332 MsG0180000436.01.T01:CDS 35.0%
!! CAAAACTCTCAATAATGGAC+CGG - Chr1:5999244-5999263 None:intergenic 35.0%
!! CATCACCGACTCTATATATT+CGG - Chr1:5998879-5998898 None:intergenic 35.0%
!! GGAAAATGGAGAGTACTAAT+AGG + Chr1:5997685-5997704 MsG0180000436.01.T01:CDS 35.0%
!!! AAGTTTTGGCTTGATGAAAG+CGG + Chr1:5998277-5998296 MsG0180000436.01.T01:CDS 35.0%
!!! TCAATTTTTAGCTATGCCGA+AGG + Chr1:5997540-5997559 MsG0180000436.01.T01:CDS 35.0%
AAGTGGTACCAAGTTCTGTA+TGG - Chr1:5996922-5996941 None:intergenic 40.0%
ACACCCTCAAAATCCTTTGA+TGG + Chr1:5997597-5997616 MsG0180000436.01.T01:CDS 40.0%
ACAGGAGAATATTATGGGCA+TGG + Chr1:5998079-5998098 MsG0180000436.01.T01:CDS 40.0%
ACCTACTTCAACTCCATTAG+GGG - Chr1:5997626-5997645 None:intergenic 40.0%
AGTGTCAAACACTGACATGT+CGG + Chr1:5998567-5998586 MsG0180000436.01.T01:intron 40.0%
AGTTGTTCTAACTCTTCGAC+TGG - Chr1:5998322-5998341 None:intergenic 40.0%
ATATTGTAGTCCTCTCTGTC+TGG - Chr1:5998852-5998871 None:intergenic 40.0%
CACCTACTTCAACTCCATTA+GGG - Chr1:5997627-5997646 None:intergenic 40.0%
CAGGAGAATATTATGGGCAT+GGG + Chr1:5998080-5998099 MsG0180000436.01.T01:CDS 40.0%
CTACAATGTAGACGATTCCA+AGG + Chr1:5998254-5998273 MsG0180000436.01.T01:intron 40.0%
GCTAAAGCTTGCAAACCAAA+TGG - Chr1:5998820-5998839 None:intergenic 40.0%
GGCAAGGAAAAGATGGAAAA+TGG + Chr1:5997671-5997690 MsG0180000436.01.T01:CDS 40.0%
GGTCATGAGAAAATGGTATG+GGG + Chr1:5997346-5997365 MsG0180000436.01.T01:CDS 40.0%
GTACTAATAGGTGCTCGAAA+TGG + Chr1:5997697-5997716 MsG0180000436.01.T01:CDS 40.0%
GTTTCGTGTCTGTACTTCAT+AGG - Chr1:5998463-5998482 None:intergenic 40.0%
TATCAATAGCACAAATGGGG+TGG + Chr1:5997843-5997862 MsG0180000436.01.T01:CDS 40.0%
TCACCTACTTCAACTCCATT+AGG - Chr1:5997628-5997647 None:intergenic 40.0%
TCATCAAGCCAAAACTTCCT+TGG - Chr1:5998274-5998293 None:intergenic 40.0%
TCTTCGTCTTCAATGAGGAA+GGG + Chr1:5999053-5999072 MsG0180000436.01.T01:CDS 40.0%
TCTTGAGGATCAACTTCACT+TGG - Chr1:5998754-5998773 None:intergenic 40.0%
TCTTTCAATGCCAGCTTCTT+TGG - Chr1:5998121-5998140 None:intergenic 40.0%
TTAGGGTCTGATAGATCCTT+CGG - Chr1:5997559-5997578 None:intergenic 40.0%
! AAAGAAGCTGGCATTGAAAG+AGG + Chr1:5998120-5998139 MsG0180000436.01.T01:CDS 40.0%
! AGACGATTCCAAGGAAGTTT+TGG + Chr1:5998263-5998282 MsG0180000436.01.T01:intron 40.0%
! CAGCCATCAAAGGATTTTGA+GGG - Chr1:5997603-5997622 None:intergenic 40.0%
! CATCGAGAAAAGGCATGATA+GGG + Chr1:5998794-5998813 MsG0180000436.01.T01:CDS 40.0%
! CGGTCCATTATTGAGAGTTT+TGG + Chr1:5999242-5999261 MsG0180000436.01.T01:CDS 40.0%
! CTTCAAGAGTTGATCCACTT+AGG - Chr1:5998381-5998400 None:intergenic 40.0%
!! AAAAGGTATCACTGCATCTC+AGG + Chr1:5998402-5998421 MsG0180000436.01.T01:CDS 40.0%
!! TCAACTTTTCAAGGCTGATG+TGG + Chr1:5998681-5998700 MsG0180000436.01.T01:intron 40.0%
!!! AGTTTTGGCTTGATGAAAGC+GGG + Chr1:5998278-5998297 MsG0180000436.01.T01:CDS 40.0%
!!! ATTGAGAGTTTTGGAGATGG+AGG + Chr1:5999251-5999270 MsG0180000436.01.T01:CDS 40.0%
!!! TTGAGAGTTTTGGAGATGGA+GGG + Chr1:5999252-5999271 MsG0180000436.01.T01:CDS 40.0%
AACCCTGATGGAGCAACATT+TGG + Chr1:5997325-5997344 MsG0180000436.01.T01:CDS 45.0%
ACAGGTCTTCGTCTTCAATG+AGG + Chr1:5999048-5999067 MsG0180000436.01.T01:intron 45.0%
ACCTCAGCACTTTGTAGATC+AGG - Chr1:5998724-5998743 None:intergenic 45.0%
ACTGCATGGCAAGGAAAAGA+TGG + Chr1:5997664-5997683 MsG0180000436.01.T01:CDS 45.0%
ATCCGGACATTCACAAACAC+CGG - Chr1:5997809-5997828 None:intergenic 45.0%
CATCAATAGACCAGACAGAG+AGG + Chr1:5998839-5998858 MsG0180000436.01.T01:CDS 45.0%
CTTGTTTCACCAGCACAAGT+TGG - Chr1:5997427-5997446 None:intergenic 45.0%
GACCAAATGTTGCTCCATCA+GGG - Chr1:5997330-5997349 None:intergenic 45.0%
GCTATTGAACCAACTTGTGC+TGG + Chr1:5997415-5997434 MsG0180000436.01.T01:CDS 45.0%
GGTGAAACAAGTTGCTTCTC+AGG + Chr1:5997436-5997455 MsG0180000436.01.T01:CDS 45.0%
GTCTTCGTCTTCAATGAGGA+AGG + Chr1:5999052-5999071 MsG0180000436.01.T01:CDS 45.0%
TACCGGTGTTTGTGAATGTC+CGG + Chr1:5997804-5997823 MsG0180000436.01.T01:CDS 45.0%
TGACCAAATGTTGCTCCATC+AGG - Chr1:5997331-5997350 None:intergenic 45.0%
TGATGATAAGTGACCAGACC+AGG + Chr1:5998911-5998930 MsG0180000436.01.T01:CDS 45.0%
TTCCTTGCCATGCAGTTGAA+GGG - Chr1:5997660-5997679 None:intergenic 45.0%
TTGCTCCATCAGGGTTATGT+TGG - Chr1:5997321-5997340 None:intergenic 45.0%
TTGTTCTCCAGGGACTATTG+TGG - Chr1:5997467-5997486 None:intergenic 45.0%
TTTCCTTGCCATGCAGTTGA+AGG - Chr1:5997661-5997680 None:intergenic 45.0%
! AAAGGCATGATAGGGCCATT+TGG + Chr1:5998802-5998821 MsG0180000436.01.T01:CDS 45.0%
! AAGCTGGCATTGAAAGAGGA+TGG + Chr1:5998124-5998143 MsG0180000436.01.T01:CDS 45.0%
! AGCTGGCATTGAAAGAGGAT+GGG + Chr1:5998125-5998144 MsG0180000436.01.T01:CDS 45.0%
! GCAGCCATCAAAGGATTTTG+AGG - Chr1:5997604-5997623 None:intergenic 45.0%
! GCATCGAGAAAAGGCATGAT+AGG + Chr1:5998793-5998812 MsG0180000436.01.T01:CDS 45.0%
!! ACCTGATCTACAAAGTGCTG+AGG + Chr1:5998720-5998739 MsG0180000436.01.T01:CDS 45.0%
!! GTTCTGAGATAACCACACTC+TGG - Chr1:5999358-5999377 None:intergenic 45.0%
!! TGGGGTGGACTATACATCTA+TGG + Chr1:5997858-5997877 MsG0180000436.01.T01:CDS 45.0%
ACACTGACATGTCGGACATC+AGG + Chr1:5998575-5998594 MsG0180000436.01.T01:intron 50.0%
ACTGGAGAGACAGTCCTAAG+TGG + Chr1:5998364-5998383 MsG0180000436.01.T01:CDS 50.0%
GAGTCTGACACCAAAGAAGC+TGG + Chr1:5998108-5998127 MsG0180000436.01.T01:CDS 50.0%
GCCCCTAATGGAGTTGAAGT+AGG + Chr1:5997622-5997641 MsG0180000436.01.T01:CDS 50.0%
TCAGAGACCCTTCAACTGCA+TGG + Chr1:5997650-5997669 MsG0180000436.01.T01:CDS 50.0%
! CAATGATGGAAGCCAGAGTG+TGG + Chr1:5999343-5999362 MsG0180000436.01.T01:CDS 50.0%
CCATTAGGGGCAGCCATCAA+AGG - Chr1:5997613-5997632 None:intergenic 55.0%
GACCCTTCAACTGCATGGCA+AGG + Chr1:5997655-5997674 MsG0180000436.01.T01:CDS 55.0%
GGTGCTCGAAATGGCGAACA+AGG + Chr1:5997706-5997725 MsG0180000436.01.T01:CDS 55.0%
TGACATGTCGGACATCAGGC+AGG + Chr1:5998579-5998598 MsG0180000436.01.T01:intron 55.0%
! CCTTTGATGGCTGCCCCTAA+TGG + Chr1:5997610-5997629 MsG0180000436.01.T01:CDS 55.0%
! GGCATTGAAAGAGGATGGGC+TGG + Chr1:5998129-5998148 MsG0180000436.01.T01:CDS 55.0%
!! AAGAGGATGGGCTGGTCTAC+AGG + Chr1:5998137-5998156 MsG0180000436.01.T01:CDS 55.0%
GCGGGAAGCGATTACTGCAG+TGG + Chr1:5998296-5998315 MsG0180000436.01.T01:CDS 60.0%
GGCTCAGCCACAATAGTCCC+TGG + Chr1:5997457-5997476 MsG0180000436.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 5996868 5999427 5996868 ID=MsG0180000436.01;Name=MsG0180000436.01
Chr1 mRNA 5996868 5999427 5996868 ID=MsG0180000436.01.T01;Parent=MsG0180000436.01;Name=MsG0180000436.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0.8|0.66|6|0|554
Chr1 exon 5996868 5996967 5996868 ID=MsG0180000436.01.T01:exon:28057;Parent=MsG0180000436.01.T01
Chr1 exon 5997281 5998158 5997281 ID=MsG0180000436.01.T01:exon:28056;Parent=MsG0180000436.01.T01
Chr1 exon 5998265 5998423 5998265 ID=MsG0180000436.01.T01:exon:28055;Parent=MsG0180000436.01.T01
Chr1 exon 5998694 5998932 5998694 ID=MsG0180000436.01.T01:exon:28054;Parent=MsG0180000436.01.T01
Chr1 exon 5999052 5999148 5999052 ID=MsG0180000436.01.T01:exon:28053;Parent=MsG0180000436.01.T01
Chr1 exon 5999236 5999427 5999236 ID=MsG0180000436.01.T01:exon:28052;Parent=MsG0180000436.01.T01
Chr1 CDS 5996868 5996967 5996868 ID=MsG0180000436.01.T01:cds;Parent=MsG0180000436.01.T01
Chr1 CDS 5997281 5998158 5997281 ID=MsG0180000436.01.T01:cds;Parent=MsG0180000436.01.T01
Chr1 CDS 5998265 5998423 5998265 ID=MsG0180000436.01.T01:cds;Parent=MsG0180000436.01.T01
Chr1 CDS 5998694 5998932 5998694 ID=MsG0180000436.01.T01:cds;Parent=MsG0180000436.01.T01
Chr1 CDS 5999052 5999148 5999052 ID=MsG0180000436.01.T01:cds;Parent=MsG0180000436.01.T01
Chr1 CDS 5999236 5999427 5999236 ID=MsG0180000436.01.T01:cds;Parent=MsG0180000436.01.T01
Gene Sequence

>MsG0180000436.01.T01

ATGGAGAACATTGCAGAGAATGCACCACCAAACAACATCAATTTTGAACAACCATACAGAACTTGGTACCACTTTCAGCCCAAAAATAATTGGATGAATGGACCAATGTACTATAAAGGATATTACCATTTCTTTTACCAACATAACCCTGATGGAGCAACATTTGGTCATGAGAAAATGGTATGGGGTCATTCTATATCCAAAGATCTCATAAATTGGACTCATTTGAATCATGCTATTGAACCAACTTGTGCTGGTGAAACAAGTTGCTTCTCAGGCTCAGCCACAATAGTCCCTGGAGAACAACCTGTTATATATATGTTGTATACAGGATTAATTCATGAAAAAACACACCAAGTTCAATTTTTAGCTATGCCGAAGGATCTATCAGACCCTAAGTTAATAGAATGGATAAAACACCCTCAAAATCCTTTGATGGCTGCCCCTAATGGAGTTGAAGTAGGTGAATTCAGAGACCCTTCAACTGCATGGCAAGGAAAAGATGGAAAATGGAGAGTACTAATAGGTGCTCGAAATGGCGAACAAGGAAAAGCTATTCTTTACAGAAGTGAGGATTTTGTTAATTGGATTGTAGATCCTAATCCATTCTATGCAACAGATGATACCGGTGTTTGTGAATGTCCGGATTTTTTTCCTGTGTATATCAATAGCACAAATGGGGTGGACTATACATCTATGGAAATTTCAAGTGTTAGACATGTCTTTAAGATAAGTTATCTACTAAGAAGTCATGATTACTACTTCATTGGGAAATATGTATCTGATTCTGATCAGGAAAAGTTTATTCTTGATGAAAAATTTACTGGAACTTGGAAGGAATTGAGATTTGACTATGGTAATTTTTATGCTTCAAAGTCATTTTTTGACTATGCTAAGAACAGGAGAATATTATGGGCATGGGTATTAGAGTCTGACACCAAAGAAGCTGGCATTGAAAGAGGATGGGCTGGTCTACAGACGATTCCAAGGAAGTTTTGGCTTGATGAAAGCGGGAAGCGATTACTGCAGTGGCCAGTCGAAGAGTTAGAACAACTACGTTACAACCAAATCAATATCACTGGAGAGACAGTCCTAAGTGGATCAACTCTTGAAGTAAAAGGTATCACTGCATCTCAGGCTGATGTGGAAGTCTTGTTTGAGCTACCTGATCTACAAAGTGCTGAGGTGCTAAAACCAAGTGAAGTTGATCCTCAAGAACTCTGTAAAGAACAATATGCATCGAGAAAAGGCATGATAGGGCCATTTGGTTTGCAAGCTTTAGCATCAATAGACCAGACAGAGAGGACTACAATATCTTTCCGAATATATAGAGTCGGTGATGAATATAAATGCTTGATGATAAGTGACCAGACCAGGTCTTCGTCTTCAATGAGGAAGGGCCTTGAAAAACCAATATATGCAACTATATTTGACGTTGATCCCAACATCAAAACGATTTCACTAAGAAGCTTGATTGACCGGTCCATTATTGAGAGTTTTGGAGATGGAGGGAAAGTTGTGATAACAAGTAGAGTTTATCCTTTACTGGCAATAGAGAAAGATGCACATCTTTTTGTATTCAATGATGGAAGCCAGAGTGTGGTTATCTCAGAACTAAATGCTTGGAGCATGAATCAAGCAGAGTTTGAGAATGAACAAACATAA

Protein sequence

>MsG0180000436.01.T01

MENIAENAPPNNINFEQPYRTWYHFQPKNNWMNGPMYYKGYYHFFYQHNPDGATFGHEKMVWGHSISKDLINWTHLNHAIEPTCAGETSCFSGSATIVPGEQPVIYMLYTGLIHEKTHQVQFLAMPKDLSDPKLIEWIKHPQNPLMAAPNGVEVGEFRDPSTAWQGKDGKWRVLIGARNGEQGKAILYRSEDFVNWIVDPNPFYATDDTGVCECPDFFPVYINSTNGVDYTSMEISSVRHVFKISYLLRSHDYYFIGKYVSDSDQEKFILDEKFTGTWKELRFDYGNFYASKSFFDYAKNRRILWAWVLESDTKEAGIERGWAGLQTIPRKFWLDESGKRLLQWPVEELEQLRYNQINITGETVLSGSTLEVKGITASQADVEVLFELPDLQSAEVLKPSEVDPQELCKEQYASRKGMIGPFGLQALASIDQTERTTISFRIYRVGDEYKCLMISDQTRSSSSMRKGLEKPIYATIFDVDPNIKTISLRSLIDRSIIESFGDGGKVVITSRVYPLLAIEKDAHLFVFNDGSQSVVISELNAWSMNQAEFENEQT*