AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000438.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000438.01.T01 MTR_1g015970 58.607 488 80 6 1 366 1 488 0.0 543
MsG0180000438.01.T01 MTR_1g015940 68.395 405 57 6 38 371 71 475 0.0 538
MsG0180000438.01.T01 MTR_1g015980 55.758 495 89 10 1 366 1 494 1.05e-173 495
MsG0180000438.01.T01 MTR_1g015910 54.622 476 94 7 13 366 39 514 2.59e-167 480
MsG0180000438.01.T01 MTR_1g015910 55.856 444 100 7 19 366 28 471 8.12e-161 462
MsG0180000438.01.T01 MTR_8g017410 44.872 390 141 6 2 319 32 419 4.01e-108 323
MsG0180000438.01.T01 MTR_8g017410 42.823 418 159 8 2 342 32 446 1.03e-104 320
MsG0180000438.01.T01 MTR_2g099950 37.792 471 173 8 16 366 44 514 2.25e-102 313
MsG0180000438.01.T01 MTR_5g066380 42.742 372 136 7 14 308 33 404 4.25e-99 305
MsG0180000438.01.T01 MTR_8g017410 43.200 375 161 5 19 342 27 400 2.82e-98 302
MsG0180000438.01.T01 MTR_2g099950 37.079 445 183 6 19 366 7 451 1.32e-95 294
MsG0180000438.01.T01 MTR_7g105050 36.364 484 178 11 9 366 37 516 1.28e-90 283
MsG0180000438.01.T01 MTR_1g059700 40.056 357 147 5 19 308 43 399 4.41e-86 271
MsG0180000438.01.T01 MTR_3g008530 37.265 373 160 5 20 323 104 471 8.22e-78 251
MsG0180000438.01.T01 MTR_4g101630 35.544 377 174 4 20 327 112 488 9.51e-68 225
MsG0180000438.01.T01 MTR_4g101630 35.714 364 181 4 14 327 16 376 2.54e-66 219
MsG0180000438.01.T01 MTR_1g015920 51.429 70 31 2 194 263 47 113 6.42e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000438.01.T01 AT3G13790 40.733 491 158 11 5 366 40 526 5.39e-107 326
MsG0180000438.01.T01 AT1G55120 47.123 365 120 5 17 308 36 400 7.80e-107 326
MsG0180000438.01.T01 AT3G13790 40.574 488 160 10 5 366 40 523 8.06e-107 325
MsG0180000438.01.T01 AT3G13784 45.699 372 131 5 7 308 31 401 9.70e-107 325
MsG0180000438.01.T01 AT3G13784 45.333 375 131 5 7 308 31 404 4.01e-106 323
MsG0180000438.01.T01 AT3G13784 45.333 375 131 5 7 308 31 404 4.14e-106 323
MsG0180000438.01.T01 AT3G13790 40.133 451 166 7 19 366 7 456 6.32e-100 306
MsG0180000438.01.T01 AT3G13790 40.133 451 166 7 19 366 7 456 6.32e-100 306
MsG0180000438.01.T01 AT3G13790 40.133 451 166 7 19 366 7 456 6.32e-100 306
MsG0180000438.01.T01 AT1G55120 46.884 337 132 4 19 308 25 361 2.81e-99 305
MsG0180000438.01.T01 AT3G13784 46.894 322 126 2 32 308 30 351 3.29e-99 304
MsG0180000438.01.T01 AT1G55120 46.884 337 132 4 19 308 24 360 3.69e-99 305
MsG0180000438.01.T01 AT1G55120 46.884 337 132 4 19 308 49 385 6.55e-99 305
MsG0180000438.01.T01 AT5G11920 37.580 471 170 8 20 366 17 487 1.61e-98 303
MsG0180000438.01.T01 AT5G11920 43.490 361 132 5 20 308 17 377 4.56e-98 298
MsG0180000438.01.T01 AT5G11920 38.565 446 176 8 19 366 7 452 2.45e-96 296
MsG0180000438.01.T01 AT3G52600 39.851 404 166 9 12 338 39 442 6.07e-85 269
MsG0180000438.01.T01 AT3G52600 40.541 370 170 6 19 338 7 376 7.44e-83 262
MsG0180000438.01.T01 AT3G52600 40.541 370 170 6 19 338 19 388 8.87e-83 262
MsG0180000438.01.T01 AT2G36190 39.276 359 149 3 19 308 49 407 1.53e-82 263
MsG0180000438.01.T01 AT1G12240 32.068 474 194 11 20 366 121 593 2.80e-66 222
MsG0180000438.01.T01 AT1G62660 36.937 333 139 5 20 281 106 438 4.93e-64 216
MsG0180000438.01.T01 AT1G62660 37.179 312 147 4 19 281 29 340 2.04e-62 209
MsG0180000438.01.T01 AT1G62660 37.358 265 121 3 62 281 8 272 6.54e-55 188
MsG0180000438.01.T01 AT1G62660 37.358 265 121 3 62 281 8 272 6.54e-55 188

Find 76 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGTTGTGTACACTTTAC+AGG 0.213352 1:+6015824 MsG0180000438.01.T01:CDS
GTCAAAGATAGTTGCATATA+TGG 0.219840 1:-6015875 None:intergenic
TATCAAATGATCTCATAAAT+TGG 0.252820 1:+6013460 MsG0180000438.01.T01:CDS
AAGAGGATGGGCTGGTTTAC+AGG 0.274050 1:+6014212 MsG0180000438.01.T01:CDS
TAAGGATCAGCTAGATTCTT+TGG 0.290732 1:-6013633 None:intergenic
CTAAGAATAGGAGAATATTA+TGG 0.294043 1:+6014148 MsG0180000438.01.T01:CDS
AGACAATTCCAAGGAAGTTT+TGG 0.313956 1:+6014682 MsG0180000438.01.T01:intron
ATGACTTTGAAGCATAAAAT+AGG 0.323325 1:-6014113 None:intergenic
GTCAAATCTTAAGTCTTTGC+TGG 0.356543 1:-6014085 None:intergenic
GGCAAGGAAAAGATGGAAAA+TGG 0.368917 1:+6013748 MsG0180000438.01.T01:CDS
TCTTTCAATGCCATCTTGTT+CGG 0.372077 1:-6014193 None:intergenic
GTTCCTGATGTAAAATATAC+AGG 0.377777 1:+6014060 MsG0180000438.01.T01:CDS
ATCTAGCTGATCCTTACTTA+AGG 0.382167 1:+6013640 MsG0180000438.01.T01:CDS
TCTGTTGCATAGAATGGATT+AGG 0.392944 1:-6013855 None:intergenic
TAAGAATAGGAGAATATTAT+GGG 0.399819 1:+6014149 MsG0180000438.01.T01:CDS
TCATCAAGCCAAAACTTCCT+TGG 0.400363 1:-6014690 None:intergenic
AAAGACTTAAGATTTGACTA+TGG 0.408964 1:+6014090 MsG0180000438.01.T01:CDS
TCTCTCCAGTGATATTGATT+TGG 0.413347 1:-6014770 None:intergenic
TCAAAGATAGTTGCATATAT+GGG 0.434193 1:-6015874 None:intergenic
GTAATCGTCGGTGCTCAAAA+TGG 0.434292 1:+6013774 MsG0180000438.01.T01:CDS
TGTTCAGAATTGATACTGTC+TGG 0.442428 1:-6012457 None:intergenic
CTGAACAGCCATACAGAACT+TGG 0.447033 1:+6012473 MsG0180000438.01.T01:CDS
GACATAAACAGTTGTTGGTC+AGG 0.447820 1:+6013522 MsG0180000438.01.T01:CDS
GTATCATCTGTTGCATAGAA+TGG 0.447854 1:-6013861 None:intergenic
TTTATGTCACCAGGTATAGT+TGG 0.451176 1:-6013507 None:intergenic
TTCTATGCAACAGATGATAC+TGG 0.456559 1:+6013864 MsG0180000438.01.T01:CDS
TCTAGCTGATCCTTACTTAA+GGG 0.458329 1:+6013641 MsG0180000438.01.T01:CDS
TCAGAGACCCTTCGACTGCT+TGG 0.468037 1:+6013727 MsG0180000438.01.T01:CDS
TTACAGGTCTTCATTGAGGC+AGG 0.469865 1:+6015840 MsG0180000438.01.T01:CDS
AAACCTGCTATATTGTATAC+AGG 0.479468 1:+6013570 MsG0180000438.01.T01:CDS
GGCATTGAAAGAGGATGGGC+TGG 0.483690 1:+6014204 MsG0180000438.01.T01:CDS
ACTAGGTATCACTGCATCTC+AGG 0.488423 1:+6014821 MsG0180000438.01.T01:CDS
TGATCCTTACTTAAGGGAAT+GGG 0.488663 1:+6013647 MsG0180000438.01.T01:CDS
CTGATCCTTACTTAAGGGAA+TGG 0.490617 1:+6013646 MsG0180000438.01.T01:CDS
AACAATCTCACTCAGAAGCC+TGG 0.495019 1:+6015915 MsG0180000438.01.T01:CDS
TACAACCAAATCAATATCAC+TGG 0.507291 1:+6014765 MsG0180000438.01.T01:CDS
ACTGCTTGGCAAGGAAAAGA+TGG 0.511285 1:+6013741 MsG0180000438.01.T01:CDS
CTGGTGACATAAACAGTTGT+TGG 0.512139 1:+6013517 MsG0180000438.01.T01:CDS
GGATCAACTCTTGAAGTACT+AGG 0.513650 1:+6014804 MsG0180000438.01.T01:CDS
GTTCAGAATTGATACTGTCT+GGG 0.516078 1:-6012456 None:intergenic
GTTCCTGTATACAATATAGC+AGG 0.517381 1:-6013573 None:intergenic
AAGATGGCATTGAAAGAGGA+TGG 0.518422 1:+6014199 MsG0180000438.01.T01:CDS
TTCCTTGCCAAGCAGTCGAA+GGG 0.519657 1:-6013734 None:intergenic
TAGGAGAATATTATGGGGAT+GGG 0.521579 1:+6014155 MsG0180000438.01.T01:CDS
GGCTCAGCCACTATACTCTC+AGG 0.525107 1:+6013543 MsG0180000438.01.T01:CDS
CTTCAAGAGTTGATCCACTT+AGG 0.533523 1:-6014797 None:intergenic
AAAATCTGAGTATGTGATTG+AGG 0.535116 1:+6015786 MsG0180000438.01.T01:CDS
TTGGTCATGAGAAAATGGTA+TGG 0.536185 1:+6013428 MsG0180000438.01.T01:intron
GGTGCTCAAAATGGTGATGA+AGG 0.536854 1:+6013783 MsG0180000438.01.T01:CDS
TTTCCTTGCCAAGCAGTCGA+AGG 0.548632 1:-6013735 None:intergenic
CAACAACTGTTTATGTCACC+AGG 0.549416 1:-6013516 None:intergenic
ATAGGAGAATATTATGGGGA+TGG 0.552402 1:+6014154 MsG0180000438.01.T01:CDS
GACCCTTCGACTGCTTGGCA+AGG 0.557296 1:+6013732 MsG0180000438.01.T01:CDS
CCACTAGGTGGAGTCATCAA+AGG 0.562008 1:-6013687 None:intergenic
CACTTTACAGGTCTTCATTG+AGG 0.565481 1:+6015836 MsG0180000438.01.T01:CDS
GAACAAGATGGCATTGAAAG+AGG 0.570426 1:+6014195 MsG0180000438.01.T01:CDS
ATCAGCTAGATTCTTTGGCA+TGG 0.572829 1:-6013628 None:intergenic
ATTATGGGGATGGGTAGAAG+AGG 0.573959 1:+6014164 MsG0180000438.01.T01:CDS
TCATTCTCGTCAACTCCACT+AGG 0.574840 1:-6013702 None:intergenic
AAGTGGTACCAAGTTCTGTA+TGG 0.578663 1:-6012481 None:intergenic
AGTTGTTCTAACTCTTCGAC+TGG 0.580278 1:-6014738 None:intergenic
ACTGGAGAGACACTCCTAAG+TGG 0.592378 1:+6014783 MsG0180000438.01.T01:CDS
GCTATTGAACCAACTATACC+TGG 0.595633 1:+6013498 MsG0180000438.01.T01:CDS
TGGTCATGAGAAAATGGTAT+GGG 0.596488 1:+6013429 MsG0180000438.01.T01:intron
AGATGGCATTGAAAGAGGAT+GGG 0.611842 1:+6014200 MsG0180000438.01.T01:CDS
AACTGATGAAAATAGACACC+AGG 0.620927 1:+6013593 MsG0180000438.01.T01:CDS
ATACAATGTAGACAATTCCA+AGG 0.620932 1:+6014673 MsG0180000438.01.T01:intron
GTGGGAAGCGATTACTGCAG+TGG 0.622739 1:+6014715 MsG0180000438.01.T01:CDS
AAGGAAAAGATGGAAAATGG+AGG 0.623713 1:+6013751 MsG0180000438.01.T01:CDS
GAGGCTGACTCCGAACAAGA+TGG 0.625858 1:+6014183 MsG0180000438.01.T01:CDS
CCTTTGATGACTCCACCTAG+TGG 0.641854 1:+6013687 MsG0180000438.01.T01:CDS
TTCTCGTCAACTCCACTAGG+TGG 0.648487 1:-6013699 None:intergenic
AGGAAAAGATGGAAAATGGA+GGG 0.653846 1:+6013752 MsG0180000438.01.T01:CDS
TTCAGAATTGATACTGTCTG+GGG 0.658340 1:-6012455 None:intergenic
GGAAAATGGAGGGTAATCGT+CGG 0.664657 1:+6013762 MsG0180000438.01.T01:CDS
AAGAATAGGAGAATATTATG+GGG 0.682237 1:+6014150 MsG0180000438.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAACATTCA+CGG + Chr1:6012822-6012841 MsG0180000438.01.T01:intron 10.0%
!! AAAAAAAAAATAAATATACC+AGG - Chr1:6015936-6015955 None:intergenic 10.0%
!! TCTATAATATAATTGTATAA+CGG - Chr1:6014587-6014606 None:intergenic 10.0%
!!! AAAGTAATGATTTTATTAAT+TGG + Chr1:6013823-6013842 MsG0180000438.01.T01:CDS 10.0%
!! ATATTTGATCAAATTTCATA+TGG - Chr1:6012785-6012804 None:intergenic 15.0%
!! TCTAATGATTAGTATTTATT+TGG + Chr1:6013333-6013352 MsG0180000438.01.T01:intron 15.0%
!!! CTTTTTTAATTTAACTTTCA+AGG + Chr1:6015102-6015121 MsG0180000438.01.T01:intron 15.0%
!!! TGAAATTTAAGATTCTATAA+AGG - Chr1:6013256-6013275 None:intergenic 15.0%
!! ATAGTTACAATATTAAGAAC+TGG + Chr1:6014619-6014638 MsG0180000438.01.T01:intron 20.0%
!! ATGTAACTAACTATATATGT+CGG + Chr1:6014954-6014973 MsG0180000438.01.T01:intron 20.0%
!! TAAGAATAGGAGAATATTAT+GGG + Chr1:6014149-6014168 MsG0180000438.01.T01:CDS 20.0%
!! TATCAAATGATCTCATAAAT+TGG + Chr1:6013460-6013479 MsG0180000438.01.T01:CDS 20.0%
!! TTGATCAAATATAGATTCTT+TGG + Chr1:6012793-6012812 MsG0180000438.01.T01:intron 20.0%
!!! CAATTTCTATTTTACTTACT+AGG - Chr1:6015524-6015543 None:intergenic 20.0%
!!! TCATATTTTGTTGATAAATC+TGG + Chr1:6015071-6015090 MsG0180000438.01.T01:intron 20.0%
! AAAGACTTAAGATTTGACTA+TGG + Chr1:6014090-6014109 MsG0180000438.01.T01:CDS 25.0%
! AAGAATAGGAGAATATTATG+GGG + Chr1:6014150-6014169 MsG0180000438.01.T01:CDS 25.0%
! AATCATTAGATGATCACATT+TGG - Chr1:6013323-6013342 None:intergenic 25.0%
! AGTATATACTACATATGACT+AGG + Chr1:6012736-6012755 MsG0180000438.01.T01:intron 25.0%
! AGTCATATGTAGTATATACT+AGG - Chr1:6012736-6012755 None:intergenic 25.0%
! ATCAAATATAGATTCTTTGG+AGG + Chr1:6012796-6012815 MsG0180000438.01.T01:intron 25.0%
! CAATGCCAAGATTTAAAAAA+AGG + Chr1:6014357-6014376 MsG0180000438.01.T01:intron 25.0%
! CTAAGAATAGGAGAATATTA+TGG + Chr1:6014148-6014167 MsG0180000438.01.T01:CDS 25.0%
! CTATAAAGGAAAAAAAGAGA+GGG - Chr1:6013242-6013261 None:intergenic 25.0%
! CTATTCACAATATTAAGAAC+TGG + Chr1:6014523-6014542 MsG0180000438.01.T01:intron 25.0%
! GAGTACATTGAATAAATAGT+TGG - Chr1:6013202-6013221 None:intergenic 25.0%
! GTATATACTACATATGACTA+GGG + Chr1:6012737-6012756 MsG0180000438.01.T01:intron 25.0%
! TAAACTCCTTTATAGTACAT+TGG - Chr1:6013370-6013389 None:intergenic 25.0%
! TAATTGGAATATCAACAATG+TGG - Chr1:6015466-6015485 None:intergenic 25.0%
! TATACACAGGAAAAAAAATC+TGG - Chr1:6013903-6013922 None:intergenic 25.0%
! TATATACTACATATGACTAG+GGG + Chr1:6012738-6012757 MsG0180000438.01.T01:intron 25.0%
! TCAAAGATAGTTGCATATAT+GGG - Chr1:6015877-6015896 None:intergenic 25.0%
! TCTATAAAGGAAAAAAAGAG+AGG - Chr1:6013243-6013262 None:intergenic 25.0%
! TGTATATCAATAGCACAAAT+GGG + Chr1:6013917-6013936 MsG0180000438.01.T01:intron 25.0%
!! AGATAAGAATTTGAAGTAGT+TGG + Chr1:6013012-6013031 MsG0180000438.01.T01:intron 25.0%
!! TCTTTTCAGATATATAGAGT+CGG + Chr1:6015302-6015321 MsG0180000438.01.T01:intron 25.0%
!!! ACCATTCATCCAATTTTTTA+GGG - Chr1:6012512-6012531 None:intergenic 25.0%
!!! ACCTTTTTTAAACCTTTGTA+TGG - Chr1:6014316-6014335 None:intergenic 25.0%
!!! ATGACTTTGAAGCATAAAAT+AGG - Chr1:6014116-6014135 None:intergenic 25.0%
!!! GCAAACCTTTTTTTAAATCT+TGG - Chr1:6014365-6014384 None:intergenic 25.0%
!!! TACCATTCATCCAATTTTTT+AGG - Chr1:6012513-6012532 None:intergenic 25.0%
!!! TTTTTGACTATGCTAAGAAT+AGG + Chr1:6014136-6014155 MsG0180000438.01.T01:CDS 25.0%
!!! TTTTTGCTATAATTTGCGTA+AGG + Chr1:6014268-6014287 MsG0180000438.01.T01:intron 25.0%
!!! TTTTTTAAATCTTGGCATTG+TGG - Chr1:6014357-6014376 None:intergenic 25.0%
AAAATCTGAGTATGTGATTG+AGG + Chr1:6015786-6015805 MsG0180000438.01.T01:CDS 30.0%
AAACCTGCTATATTGTATAC+AGG + Chr1:6013570-6013589 MsG0180000438.01.T01:CDS 30.0%
AACATTTGGTCATGAGAAAA+TGG + Chr1:6013423-6013442 MsG0180000438.01.T01:intron 30.0%
AATATTAAGAACTGGCATTG+TGG + Chr1:6014531-6014550 MsG0180000438.01.T01:intron 30.0%
ACACATGTGCTAAAAGTAAA+TGG - Chr1:6012556-6012575 None:intergenic 30.0%
ATACAATGTAGACAATTCCA+AGG + Chr1:6014673-6014692 MsG0180000438.01.T01:intron 30.0%
CACACTTAAGAACACAAATT+AGG + Chr1:6013137-6013156 MsG0180000438.01.T01:intron 30.0%
CATCTTGACTTCTACTTTAT+TGG + Chr1:6014003-6014022 MsG0180000438.01.T01:intron 30.0%
GAAATTAAGAAATCCCAGAT+AGG + Chr1:6013034-6013053 MsG0180000438.01.T01:intron 30.0%
GAACAATATGCATCAACAAA+AGG + Chr1:6015214-6015233 MsG0180000438.01.T01:intron 30.0%
GCCATACAAAGGTTTAAAAA+AGG + Chr1:6014312-6014331 MsG0180000438.01.T01:intron 30.0%
GGTTATATTGGTAGAACAAA+TGG - Chr1:6013393-6013412 None:intergenic 30.0%
GTATATCAATAGCACAAATG+GGG + Chr1:6013918-6013937 MsG0180000438.01.T01:intron 30.0%
GTCAAAGATAGTTGCATATA+TGG - Chr1:6015878-6015897 None:intergenic 30.0%
GTGTATATCAATAGCACAAA+TGG + Chr1:6013916-6013935 MsG0180000438.01.T01:intron 30.0%
GTTCCTGATGTAAAATATAC+AGG + Chr1:6014060-6014079 MsG0180000438.01.T01:CDS 30.0%
TACAACCAAATCAATATCAC+TGG + Chr1:6014765-6014784 MsG0180000438.01.T01:CDS 30.0%
TACTCTTCAAACTTATTCTG+CGG + Chr1:6015378-6015397 MsG0180000438.01.T01:intron 30.0%
TAGTATATACTAGGATGTTG+AGG - Chr1:6012727-6012746 None:intergenic 30.0%
TGAATAGTTGTAGTCAAATG+TGG - Chr1:6014510-6014529 None:intergenic 30.0%
TTCCAATTATAGAGAGAACT+CGG + Chr1:6015477-6015496 MsG0180000438.01.T01:intron 30.0%
! CTAATTTGTGTTCTTAAGTG+TGG - Chr1:6013139-6013158 None:intergenic 30.0%
! GTTCCTGTATATTTTACATC+AGG - Chr1:6014066-6014085 None:intergenic 30.0%
! TTAAGTTGTGTACACTTTAC+AGG + Chr1:6015824-6015843 MsG0180000438.01.T01:CDS 30.0%
! TTTGTGCTATTGATATACAC+AGG - Chr1:6013916-6013935 None:intergenic 30.0%
!!! AAGGTAGTGGTTTTGAATTT+TGG - Chr1:6012630-6012649 None:intergenic 30.0%
!!! AATCCATTGATTCAAGCTTT+TGG + Chr1:6013102-6013121 MsG0180000438.01.T01:intron 30.0%
!!! AGTGAGATTGTTTTGATATC+GGG - Chr1:6015907-6015926 None:intergenic 30.0%
!!! CCATTCATCCAATTTTTTAG+GGG - Chr1:6012511-6012530 None:intergenic 30.0%
!!! GAGTGAGATTGTTTTGATAT+CGG - Chr1:6015908-6015927 None:intergenic 30.0%
AAAGGTTTGCGATCTCAATT+TGG + Chr1:6014375-6014394 MsG0180000438.01.T01:intron 35.0%
AACTGATGAAAATAGACACC+AGG + Chr1:6013593-6013612 MsG0180000438.01.T01:CDS 35.0%
AAGGAAAAGATGGAAAATGG+AGG + Chr1:6013751-6013770 MsG0180000438.01.T01:CDS 35.0%
ACAGGACCAATGTACTATAA+AGG + Chr1:6013361-6013380 MsG0180000438.01.T01:intron 35.0%
ACTTTCAGCCCCTAAAAAAT+TGG + Chr1:6012500-6012519 MsG0180000438.01.T01:CDS 35.0%
AGGAAAAAAAGAGAGGGATT+AGG - Chr1:6013236-6013255 None:intergenic 35.0%
AGGAAAAGATGGAAAATGGA+GGG + Chr1:6013752-6013771 MsG0180000438.01.T01:CDS 35.0%
AGTATTTATTTGGCTGTGAC+AGG + Chr1:6013343-6013362 MsG0180000438.01.T01:intron 35.0%
ATAGGAGAATATTATGGGGA+TGG + Chr1:6014154-6014173 MsG0180000438.01.T01:CDS 35.0%
ATATGCATCTGATTCTGATC+AGG + Chr1:6014029-6014048 MsG0180000438.01.T01:intron 35.0%
ATATTGTAGTCTTCTCTGTC+TGG - Chr1:6015283-6015302 None:intergenic 35.0%
ATCTAGCTGATCCTTACTTA+AGG + Chr1:6013640-6013659 MsG0180000438.01.T01:CDS 35.0%
ATTAAGAAATCCCAGATAGG+TGG + Chr1:6013037-6013056 MsG0180000438.01.T01:intron 35.0%
ATTTGTGTTCTTAAGTGTGG+AGG - Chr1:6013136-6013155 None:intergenic 35.0%
CAAGACTTCTATAATCAACG+AGG + Chr1:6015634-6015653 MsG0180000438.01.T01:intron 35.0%
CAATATTAAGAACTGGCATG+TGG + Chr1:6014626-6014645 MsG0180000438.01.T01:intron 35.0%
CCCCTAAAAAATTGGATGAA+TGG + Chr1:6012508-6012527 MsG0180000438.01.T01:CDS 35.0%
CGATACCAAGGTTTAAGAAA+AGG + Chr1:6014402-6014421 MsG0180000438.01.T01:intron 35.0%
CTAAAGCTTGCAAACCAAAA+TGG - Chr1:6015250-6015269 None:intergenic 35.0%
GTATCATCTGTTGCATAGAA+TGG - Chr1:6013864-6013883 None:intergenic 35.0%
GTCAAATCTTAAGTCTTTGC+TGG - Chr1:6014088-6014107 None:intergenic 35.0%
GTTCAGAATTGATACTGTCT+GGG - Chr1:6012459-6012478 None:intergenic 35.0%
GTTCCTGTATACAATATAGC+AGG - Chr1:6013576-6013595 None:intergenic 35.0%
TAAGGATCAGCTAGATTCTT+TGG - Chr1:6013636-6013655 None:intergenic 35.0%
TAGATGATCACATTTGGATG+TGG - Chr1:6013317-6013336 None:intergenic 35.0%
TAGGAGAATATTATGGGGAT+GGG + Chr1:6014155-6014174 MsG0180000438.01.T01:CDS 35.0%
TCTAGCTGATCCTTACTTAA+GGG + Chr1:6013641-6013660 MsG0180000438.01.T01:CDS 35.0%
TCTTTCAATGCCATCTTGTT+CGG - Chr1:6014196-6014215 None:intergenic 35.0%
TGATCCTTACTTAAGGGAAT+GGG + Chr1:6013647-6013666 MsG0180000438.01.T01:CDS 35.0%
TGGTCATGAGAAAATGGTAT+GGG + Chr1:6013429-6013448 MsG0180000438.01.T01:intron 35.0%
TGGTTTCATTGATGTGTTAG+CGG - Chr1:6013297-6013316 None:intergenic 35.0%
TGTTCAGAATTGATACTGTC+TGG - Chr1:6012460-6012479 None:intergenic 35.0%
TGTTCTTTACAGAGTTCTTG+AGG - Chr1:6015199-6015218 None:intergenic 35.0%
TTAAGAAATCCCAGATAGGT+GGG + Chr1:6013038-6013057 MsG0180000438.01.T01:intron 35.0%
TTCAGAATTGATACTGTCTG+GGG - Chr1:6012458-6012477 None:intergenic 35.0%
TTCCGAGTTCTCTCTATAAT+TGG - Chr1:6015482-6015501 None:intergenic 35.0%
TTCTATGCAACAGATGATAC+TGG + Chr1:6013864-6013883 MsG0180000438.01.T01:CDS 35.0%
TTGGTCATGAGAAAATGGTA+TGG + Chr1:6013428-6013447 MsG0180000438.01.T01:intron 35.0%
TTTATGTCACCAGGTATAGT+TGG - Chr1:6013510-6013529 None:intergenic 35.0%
TTTCTTAAACCTTGGTATCG+TGG - Chr1:6014402-6014421 None:intergenic 35.0%
! ACAGACCTTTTCTTAAACCT+TGG - Chr1:6014410-6014429 None:intergenic 35.0%
! AGACAATTCCAAGGAAGTTT+TGG + Chr1:6014682-6014701 MsG0180000438.01.T01:intron 35.0%
! CATCAACAAAAGGCATGATA+GGG + Chr1:6015224-6015243 MsG0180000438.01.T01:intron 35.0%
! GAGTACTGCAAAAAATAACC+TGG - Chr1:6015363-6015382 None:intergenic 35.0%
! GTTAATATAAGTGTCGTGTC+TGG - Chr1:6014899-6014918 None:intergenic 35.0%
! TAAATGGACAGTGAGTGTTT+TGG - Chr1:6012540-6012559 None:intergenic 35.0%
! TCTCTCCAGTGATATTGATT+TGG - Chr1:6014773-6014792 None:intergenic 35.0%
! TCTGTTGCATAGAATGGATT+AGG - Chr1:6013858-6013877 None:intergenic 35.0%
! TTTAACTTTCAAGGCTGATG+TGG + Chr1:6015111-6015130 MsG0180000438.01.T01:intron 35.0%
! TTTTCCCATTCCCTTAAGTA+AGG - Chr1:6013654-6013673 None:intergenic 35.0%
!! AAATGGGGTTGATACAACTA+CGG + Chr1:6013933-6013952 MsG0180000438.01.T01:intron 35.0%
!! TTTTTCACCTGAGAGTATAG+TGG - Chr1:6013553-6013572 None:intergenic 35.0%
!!! AAGTTTTGGCTTGATGAAAG+TGG + Chr1:6014696-6014715 MsG0180000438.01.T01:CDS 35.0%
!!! AATTTTTTAGGGGCTGAAAG+TGG - Chr1:6012501-6012520 None:intergenic 35.0%
!!! AGTTTTGGCTTGATGAAAGT+GGG + Chr1:6014697-6014716 MsG0180000438.01.T01:CDS 35.0%
AAGTGGTACCAAGTTCTGTA+TGG - Chr1:6012484-6012503 None:intergenic 40.0%
ACTGGTATGCTTCATACTCT+CGG + Chr1:6012662-6012681 MsG0180000438.01.T01:intron 40.0%
AGACATACCATCGATCTGAA+CGG + Chr1:6015026-6015045 MsG0180000438.01.T01:intron 40.0%
AGAGGAGAAAACACACAACA+TGG - Chr1:6014864-6014883 None:intergenic 40.0%
AGAGTATGAAGCATACCAGT+AGG - Chr1:6012662-6012681 None:intergenic 40.0%
AGTTGTTCTAACTCTTCGAC+TGG - Chr1:6014741-6014760 None:intergenic 40.0%
ATCAGCTAGATTCTTTGGCA+TGG - Chr1:6013631-6013650 None:intergenic 40.0%
CAAAAAACAGGAGCGGTAAA+GGG + Chr1:6012862-6012881 MsG0180000438.01.T01:intron 40.0%
CAACAACTGTTTATGTCACC+AGG - Chr1:6013519-6013538 None:intergenic 40.0%
CACTTTACAGGTCTTCATTG+AGG + Chr1:6015836-6015855 MsG0180000438.01.T01:CDS 40.0%
CTGATCCTTACTTAAGGGAA+TGG + Chr1:6013646-6013665 MsG0180000438.01.T01:CDS 40.0%
CTGCAAAAAATAACCTGGTC+TGG - Chr1:6015358-6015377 None:intergenic 40.0%
CTGGTGACATAAACAGTTGT+TGG + Chr1:6013517-6013536 MsG0180000438.01.T01:CDS 40.0%
GACATAAACAGTTGTTGGTC+AGG + Chr1:6013522-6013541 MsG0180000438.01.T01:CDS 40.0%
GCTATTGAACCAACTATACC+TGG + Chr1:6013498-6013517 MsG0180000438.01.T01:CDS 40.0%
GGAAGTCATGGATAAGAGAA+AGG + Chr1:6015498-6015517 MsG0180000438.01.T01:intron 40.0%
GGCAAGGAAAAGATGGAAAA+TGG + Chr1:6013748-6013767 MsG0180000438.01.T01:CDS 40.0%
GGTCCAAAAGCTTGAATCAA+TGG - Chr1:6013108-6013127 None:intergenic 40.0%
TCATCAAGCCAAAACTTCCT+TGG - Chr1:6014693-6014712 None:intergenic 40.0%
TTCTTAAGTGTGGAGGTCTT+CGG - Chr1:6013129-6013148 None:intergenic 40.0%
TTGCGTAAGGTTTGTGATCT+CGG + Chr1:6014281-6014300 MsG0180000438.01.T01:intron 40.0%
TTGCTGCATCAGGGTTATAT+TGG - Chr1:6013405-6013424 None:intergenic 40.0%
! AAGATGGCATTGAAAGAGGA+TGG + Chr1:6014199-6014218 MsG0180000438.01.T01:CDS 40.0%
! AGATGGCATTGAAAGAGGAT+GGG + Chr1:6014200-6014219 MsG0180000438.01.T01:CDS 40.0%
! CTTCAAGAGTTGATCCACTT+AGG - Chr1:6014800-6014819 None:intergenic 40.0%
! GAACAAGATGGCATTGAAAG+AGG + Chr1:6014195-6014214 MsG0180000438.01.T01:CDS 40.0%
! GCATCAACAAAAGGCATGAT+AGG + Chr1:6015223-6015242 MsG0180000438.01.T01:intron 40.0%
! GCATGGCTAAATTTTGAACC+TGG - Chr1:6013614-6013633 None:intergenic 40.0%
! GGAGTCATCAAAGGATTTTG+AGG - Chr1:6013681-6013700 None:intergenic 40.0%
! GGATCAACTCTTGAAGTACT+AGG + Chr1:6014804-6014823 MsG0180000438.01.T01:CDS 40.0%
! TACGAACACCTTCGTTTTCT+TGG - Chr1:6013066-6013085 None:intergenic 40.0%
! TGATGTGTTAGCGGTGTTTT+AGG - Chr1:6013288-6013307 None:intergenic 40.0%
!! AAAACGAAGGTGTTCGTAAC+TGG + Chr1:6013068-6013087 MsG0180000438.01.T01:intron 40.0%
!! ATTGTATAACGGATAGCGCA+AGG - Chr1:6014576-6014595 None:intergenic 40.0%
!!! CTTTACCGCTCCTGTTTTTT+GGG - Chr1:6012863-6012882 None:intergenic 40.0%
AAAGGTCTGCGATGTCAATC+TGG + Chr1:6014330-6014349 MsG0180000438.01.T01:intron 45.0%
AACAATCTCACTCAGAAGCC+TGG + Chr1:6015915-6015934 MsG0180000438.01.T01:CDS 45.0%
AACCCTGATGCAGCAACATT+TGG + Chr1:6013409-6013428 MsG0180000438.01.T01:intron 45.0%
ACCTCTGCACTTTGTAGATC+AGG - Chr1:6015154-6015173 None:intergenic 45.0%
ACCTGATCTACAAAGTGCAG+AGG + Chr1:6015150-6015169 MsG0180000438.01.T01:intron 45.0%
ACTAGGTATCACTGCATCTC+AGG + Chr1:6014821-6014840 MsG0180000438.01.T01:CDS 45.0%
ACTGCTTGGCAAGGAAAAGA+TGG + Chr1:6013741-6013760 MsG0180000438.01.T01:CDS 45.0%
ATACCATCGATCTGAACGGT+TGG + Chr1:6015030-6015049 MsG0180000438.01.T01:intron 45.0%
ATTATGGGGATGGGTAGAAG+AGG + Chr1:6014164-6014183 MsG0180000438.01.T01:CDS 45.0%
CAATTTGGACCACGATACCA+AGG + Chr1:6014390-6014409 MsG0180000438.01.T01:intron 45.0%
CCAAAAAACAGGAGCGGTAA+AGG + Chr1:6012861-6012880 MsG0180000438.01.T01:intron 45.0%
CTGAACAGCCATACAGAACT+TGG + Chr1:6012473-6012492 MsG0180000438.01.T01:CDS 45.0%
GACCAAATGTTGCTGCATCA+GGG - Chr1:6013414-6013433 None:intergenic 45.0%
GGAAAATGGAGGGTAATCGT+CGG + Chr1:6013762-6013781 MsG0180000438.01.T01:CDS 45.0%
GTTACCACAGCCCAAAAAAC+AGG + Chr1:6012850-6012869 MsG0180000438.01.T01:intron 45.0%
GTTCAGATCGATGGTATGTC+TGG - Chr1:6015027-6015046 None:intergenic 45.0%
TAAGGTTTGTGATCTCGGTC+TGG + Chr1:6014286-6014305 MsG0180000438.01.T01:intron 45.0%
TACCAGTAGGATCTGCATGA+AGG - Chr1:6012649-6012668 None:intergenic 45.0%
TACCTTCATGCAGATCCTAC+TGG + Chr1:6012644-6012663 MsG0180000438.01.T01:intron 45.0%
TAGAGAGAACTCGGAAGTCA+TGG + Chr1:6015486-6015505 MsG0180000438.01.T01:intron 45.0%
TAGGATCTGCATGAAGGTAG+TGG - Chr1:6012643-6012662 None:intergenic 45.0%
TCATTCTCGTCAACTCCACT+AGG - Chr1:6013705-6013724 None:intergenic 45.0%
TGACCAAATGTTGCTGCATC+AGG - Chr1:6013415-6013434 None:intergenic 45.0%
TGATGATAAGTGACCAGACC+AGG + Chr1:6015342-6015361 MsG0180000438.01.T01:intron 45.0%
TTACAGGTCTTCATTGAGGC+AGG + Chr1:6015840-6015859 MsG0180000438.01.T01:CDS 45.0%
TTCTTGGTTCCCACCTATCT+GGG - Chr1:6013050-6013069 None:intergenic 45.0%
TTTCTTGGTTCCCACCTATC+TGG - Chr1:6013051-6013070 None:intergenic 45.0%
! AAGGCATGATAGGGCCATTT+TGG + Chr1:6015233-6015252 MsG0180000438.01.T01:intron 45.0%
! ATAAGTGTCGTGTCTGGTGT+TGG - Chr1:6014893-6014912 None:intergenic 45.0%
! GGTGCTCAAAATGGTGATGA+AGG + Chr1:6013783-6013802 MsG0180000438.01.T01:CDS 45.0%
! GTAATCGTCGGTGCTCAAAA+TGG + Chr1:6013774-6013793 MsG0180000438.01.T01:CDS 45.0%
!!! CCTTTACCGCTCCTGTTTTT+TGG - Chr1:6012864-6012883 None:intergenic 45.0%
AAAGGTCTGTGATCTCGCTC+TGG + Chr1:6014420-6014439 MsG0180000438.01.T01:intron 50.0%
ACTGGAGAGACACTCCTAAG+TGG + Chr1:6014783-6014802 MsG0180000438.01.T01:CDS 50.0%
CACAGCCCAAAAAACAGGAG+CGG + Chr1:6012855-6012874 MsG0180000438.01.T01:intron 50.0%
CCACTAGGTGGAGTCATCAA+AGG - Chr1:6013690-6013709 None:intergenic 50.0%
GGTGGGAACCAAGAAAACGA+AGG + Chr1:6013055-6013074 MsG0180000438.01.T01:intron 50.0%
TTCCTTGCCAAGCAGTCGAA+GGG - Chr1:6013737-6013756 None:intergenic 50.0%
TTCTCGTCAACTCCACTAGG+TGG - Chr1:6013702-6013721 None:intergenic 50.0%
TTTCCTTGCCAAGCAGTCGA+AGG - Chr1:6013738-6013757 None:intergenic 50.0%
! CCTTTGATGACTCCACCTAG+TGG + Chr1:6013687-6013706 MsG0180000438.01.T01:CDS 50.0%
! CGCTCTGGACAGCAATAACA+GGG + Chr1:6014435-6014454 MsG0180000438.01.T01:intron 50.0%
! TCGCTCTGGACAGCAATAAC+AGG + Chr1:6014434-6014453 MsG0180000438.01.T01:intron 50.0%
!! AAGAGGATGGGCTGGTTTAC+AGG + Chr1:6014212-6014231 MsG0180000438.01.T01:CDS 50.0%
!! ACGAAGGTGTTCGTAACTGG+TGG + Chr1:6013071-6013090 MsG0180000438.01.T01:intron 50.0%
CGGTCTGGACAGCCATACAA+AGG + Chr1:6014301-6014320 MsG0180000438.01.T01:intron 55.0%
GCACCAACCGTTCAGATCGA+TGG - Chr1:6015036-6015055 None:intergenic 55.0%
GGCTCAGCCACTATACTCTC+AGG + Chr1:6013543-6013562 MsG0180000438.01.T01:CDS 55.0%
GTGGGAAGCGATTACTGCAG+TGG + Chr1:6014715-6014734 MsG0180000438.01.T01:CDS 55.0%
TCAGAGACCCTTCGACTGCT+TGG + Chr1:6013727-6013746 MsG0180000438.01.T01:CDS 55.0%
! GAGGCTGACTCCGAACAAGA+TGG + Chr1:6014183-6014202 MsG0180000438.01.T01:CDS 55.0%
! GGCATTGAAAGAGGATGGGC+TGG + Chr1:6014204-6014223 MsG0180000438.01.T01:CDS 55.0%
! GTCTGGTGTTGGAGCTTCAG+AGG - Chr1:6014882-6014901 None:intergenic 55.0%
!!! CGCTCCTGTTTTTTGGGCTG+TGG - Chr1:6012857-6012876 None:intergenic 55.0%
GACCCTTCGACTGCTTGGCA+AGG + Chr1:6013732-6013751 MsG0180000438.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 6012430 6015963 6012430 ID=MsG0180000438.01;Name=MsG0180000438.01
Chr1 mRNA 6012430 6015963 6012430 ID=MsG0180000438.01.T01;Parent=MsG0180000438.01;Name=MsG0180000438.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|0.5|0.2|5|0|373
Chr1 exon 6012430 6012529 6012430 ID=MsG0180000438.01.T01:exon:28045;Parent=MsG0180000438.01.T01
Chr1 exon 6013439 6013917 6013439 ID=MsG0180000438.01.T01:exon:28044;Parent=MsG0180000438.01.T01
Chr1 exon 6014051 6014233 6014051 ID=MsG0180000438.01.T01:exon:28043;Parent=MsG0180000438.01.T01
Chr1 exon 6014684 6014846 6014684 ID=MsG0180000438.01.T01:exon:28042;Parent=MsG0180000438.01.T01
Chr1 exon 6015767 6015963 6015767 ID=MsG0180000438.01.T01:exon:28041;Parent=MsG0180000438.01.T01
Chr1 CDS 6012430 6012529 6012430 ID=MsG0180000438.01.T01:cds;Parent=MsG0180000438.01.T01
Chr1 CDS 6013439 6013917 6013439 ID=MsG0180000438.01.T01:cds;Parent=MsG0180000438.01.T01
Chr1 CDS 6014051 6014233 6014051 ID=MsG0180000438.01.T01:cds;Parent=MsG0180000438.01.T01
Chr1 CDS 6014684 6014846 6014684 ID=MsG0180000438.01.T01:cds;Parent=MsG0180000438.01.T01
Chr1 CDS 6015767 6015963 6015767 ID=MsG0180000438.01.T01:cds;Parent=MsG0180000438.01.T01
Gene Sequence

>MsG0180000438.01.T01

ATGGAAAACATCACAAATGATGCATCCCCAGACAGTATCAATTCTGAACAGCCATACAGAACTTGGTACCACTTTCAGCCCCTAAAAAATTGGATGAATGAAAATGGTATGGGTCATTCTGTATCAAATGATCTCATAAATTGGACTCATCTAAATGATGCTATTGAACCAACTATACCTGGTGACATAAACAGTTGTTGGTCAGGCTCAGCCACTATACTCTCAGGTGAAAAACCTGCTATATTGTATACAGGAACTGATGAAAATAGACACCAGGTTCAAAATTTAGCCATGCCAAAGAATCTAGCTGATCCTTACTTAAGGGAATGGGAAAAACATCCTCAAAATCCTTTGATGACTCCACCTAGTGGAGTTGACGAGAATGAATTCAGAGACCCTTCGACTGCTTGGCAAGGAAAAGATGGAAAATGGAGGGTAATCGTCGGTGCTCAAAATGGTGATGAAGGAAAAGTTATTCTTTACAAAAGTAATGATTTTATTAATTGGATAGTAGATCCTAATCCATTCTATGCAACAGATGATACTGGTGTTTGTGAATGTCCAGATTTTTTTTCCTGTGAAAAATTTGTTCCTGATGTAAAATATACAGGAACCAGCAAAGACTTAAGATTTGACTATGGCCTATTTTATGCTTCAAAGTCATTTTTTGACTATGCTAAGAATAGGAGAATATTATGGGGATGGGTAGAAGAGGCTGACTCCGAACAAGATGGCATTGAAAGAGGATGGGCTGGTTTACAGACAATTCCAAGGAAGTTTTGGCTTGATGAAAGTGGGAAGCGATTACTGCAGTGGCCAGTCGAAGAGTTAGAACAACTACGTTACAACCAAATCAATATCACTGGAGAGACACTCCTAAGTGGATCAACTCTTGAAGTACTAGGTATCACTGCATCTCAGGTACTGCATTTATTTCACTGCAGAAAATCTGAGTATGTGATTGAGGCTAGAGCTCATCAATTTAAGTTGTGTACACTTTACAGGTCTTCATTGAGGCAGGATCTTAAGAAACCCATATATGCAACTATCTTTGACATTGATCCCGATATCAAAACAATCTCACTCAGAAGCCTGGTATATTTATTTTTTTTTTATCAATAG
Protein sequence

>MsG0180000438.01.T01

MENITNDASPDSINSEQPYRTWYHFQPLKNWMNENGMGHSVSNDLINWTHLNDAIEPTIPGDINSCWSGSATILSGEKPAILYTGTDENRHQVQNLAMPKNLADPYLREWEKHPQNPLMTPPSGVDENEFRDPSTAWQGKDGKWRVIVGAQNGDEGKVILYKSNDFINWIVDPNPFYATDDTGVCECPDFFSCEKFVPDVKYTGTSKDLRFDYGLFYASKSFFDYAKNRRILWGWVEEADSEQDGIERGWAGLQTIPRKFWLDESGKRLLQWPVEELEQLRYNQINITGETLLSGSTLEVLGITASQVLHLFHCRKSEYVIEARAHQFKLCTLYRSSLRQDLKKPIYATIFDIDPDIKTISLRSLVYLFFFYQ*