AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000629.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000629.01.T01 MTR_1g101400 70.339 118 6 2 40 128 41 158 5.14e-46 155
MsG0180000629.01.T01 MTR_2g093060 53.012 83 15 2 143 203 264 344 4.89e-18 82.4
MsG0180000629.01.T01 MTR_2g093060 53.012 83 15 2 143 203 264 344 4.97e-18 82.4
MsG0180000629.01.T01 MTR_2g093060 50.575 87 19 2 139 203 245 329 1.42e-17 80.9
MsG0180000629.01.T01 MTR_2g021790 58.621 58 18 2 42 93 1 58 1.32e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000629.01.T01 AT5G52100 57.627 118 21 2 40 128 36 153 2.85e-35 127

Find 126 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATATGTTTCTCTCTTTC+TGG 0.044768 1:+8860297 MsG0180000629.01.T01:CDS
TTCAAACCTGAGTTTGTTTA+TGG 0.100230 1:+8860859 MsG0180000629.01.T01:exon
GACTGACTTTGATCTGAATT+TGG 0.128802 1:+8860372 MsG0180000629.01.T01:CDS
AGTAAAGGAAAGATAATAAT+AGG 0.187247 1:+8861535 MsG0180000629.01.T01:three_prime_UTR
AAATGACCTTACTATGGTTT+TGG 0.191058 1:+8858625 MsG0180000629.01.T01:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 1:+8858326 MsG0180000629.01.T01:intron
AACAGAAGATAGTTGATTAT+TGG 0.224941 1:+8860891 MsG0180000629.01.T01:three_prime_UTR
AATCAACTATCTTCTGTTAT+AGG 0.232152 1:-8860886 None:intergenic
TTTCTCTCTTTCTGGAAATC+AGG 0.272997 1:+8860305 MsG0180000629.01.T01:CDS
GCAGATGATGATTACATATC+AGG 0.313619 1:+8861257 MsG0180000629.01.T01:intron
GCCAGAGGAATGGAAGTTTC+TGG 0.319689 1:+8858395 MsG0180000629.01.T01:CDS
GAGCTGTTTGCAAGGCTATA+TGG 0.324607 1:-8861394 None:intergenic
GCATCCTCGAAGGAGTTTAA+AGG 0.331002 1:+8860477 MsG0180000629.01.T01:CDS
AGAAGAGAGGTGAGAAGAAC+GGG 0.338133 1:+8856398 MsG0180000629.01.T01:five_prime_UTR
TATACTAAATGACCTTACTA+TGG 0.353599 1:+8858619 MsG0180000629.01.T01:CDS
CCAGAAAGAGAGAAACATAT+TGG 0.358725 1:-8860297 None:intergenic
CAAGGATGTGCAGCCTTATG+AGG 0.363133 1:-8861029 None:intergenic
ACTATATAGGCAACAACATT+TGG 0.363452 1:+8859142 MsG0180000629.01.T01:intron
ATATGGTATAAGTATTTAAT+CGG 0.365194 1:-8861377 None:intergenic
CTTATGATAGGCATCCTATC+TGG 0.372933 1:-8861562 None:intergenic
ACTGACTTTGATCTGAATTT+GGG 0.377930 1:+8860373 MsG0180000629.01.T01:CDS
GGTGAGAAGAACGGGAAAGA+AGG 0.383275 1:+8856406 MsG0180000629.01.T01:five_prime_UTR
GTGAGAAGAACGGGAAAGAA+GGG 0.400025 1:+8856407 MsG0180000629.01.T01:five_prime_UTR
GTACATGCCGCGGATCAAAT+TGG 0.402326 1:+8859180 MsG0180000629.01.T01:CDS
ATGCATAGGGCCAATCAGTT+GGG 0.408330 1:-8861469 None:intergenic
ACGGGAAAGAAGGGAGGTCG+AGG 0.416772 1:+8856416 MsG0180000629.01.T01:five_prime_UTR
TATCATGTATCTCTTATGAT+AGG 0.418281 1:-8861574 None:intergenic
TTCTCTCTTTCTGGAAATCA+GGG 0.422990 1:+8860306 MsG0180000629.01.T01:CDS
TCTGAAGAAGTTAAAATCTC+TGG 0.431243 1:-8861086 None:intergenic
TCACCCCTTGCTCACCATGC+TGG 0.433731 1:-8859240 None:intergenic
TAATAATAGGGTTTCCAGAT+AGG 0.436011 1:+8861548 MsG0180000629.01.T01:three_prime_UTR
CTTATTCCAGGTTTCATCCA+TGG 0.441827 1:+8860785 MsG0180000629.01.T01:intron
GTAAAGGAAAGATAATAATA+GGG 0.442334 1:+8861536 MsG0180000629.01.T01:three_prime_UTR
AAGAAGAGAGGTGAGAAGAA+CGG 0.444699 1:+8856397 MsG0180000629.01.T01:five_prime_UTR
CAGATTCAGTGGAATCTGTA+AGG 0.450140 1:+8861105 MsG0180000629.01.T01:three_prime_UTR
TTGCAGACTATTTGTAAGCC+AGG 0.450460 1:-8861616 None:intergenic
GCAAATTATTATAAGAGTAA+AGG 0.452896 1:+8861520 MsG0180000629.01.T01:three_prime_UTR
GGAGATGAGAAGAGAGGAAA+CGG 0.455745 1:+8856438 MsG0180000629.01.T01:five_prime_UTR
ATAACAAACGAAATATTTGA+TGG 0.458452 1:+8861425 MsG0180000629.01.T01:three_prime_UTR
GGTGAGGTCTAAATCTTTCA+AGG 0.460191 1:-8861047 None:intergenic
TACATAGCAGAAATTCTTTG+AGG 0.464491 1:+8860938 MsG0180000629.01.T01:three_prime_UTR
TTCATCCATGGGCTCTTCAC+AGG 0.471535 1:+8860797 MsG0180000629.01.T01:CDS
AAACGGGTACGGGAGAAAGA+AGG 0.472509 1:+8856455 MsG0180000629.01.T01:five_prime_UTR
TCCAGAAACTTCCATTCCTC+TGG 0.475788 1:-8858396 None:intergenic
GAAATATTTGATGGTGCTAA+AGG 0.477207 1:+8861434 MsG0180000629.01.T01:three_prime_UTR
ATAGCCTCTTCACTTAGGCT+TGG 0.478230 1:-8861147 None:intergenic
TTAAACTCCTTCGAGGATGC+AGG 0.479138 1:-8860474 None:intergenic
ACAAATAGTCTGCAATGAAA+AGG 0.479215 1:+8861624 MsG0180000629.01.T01:three_prime_UTR
CTTGCATAGCCTCTTCACTT+AGG 0.480071 1:-8861152 None:intergenic
GAGAAGAGAGGAAACGGGTA+CGG 0.482414 1:+8856444 MsG0180000629.01.T01:five_prime_UTR
TATACCTTTAAACTCCTTCG+AGG 0.483660 1:-8860481 None:intergenic
ATTGTATTTGTCCCATGCAT+AGG 0.486886 1:-8861483 None:intergenic
TTATTCCAGGTTTCATCCAT+GGG 0.490950 1:+8860786 MsG0180000629.01.T01:intron
CTTTGATCTGAATTTGGGCA+TGG 0.492884 1:+8860378 MsG0180000629.01.T01:CDS
CATGGGCTCTTCACAGGAAG+TGG 0.492997 1:+8860803 MsG0180000629.01.T01:CDS
GTGTAGAGCATTCCCTCATA+AGG 0.493322 1:+8861016 MsG0180000629.01.T01:three_prime_UTR
CGGGAAAGAAGGGAGGTCGA+GGG 0.494752 1:+8856417 MsG0180000629.01.T01:five_prime_UTR
ACGGGTACGGGAGAAAGAAG+GGG 0.495118 1:+8856457 MsG0180000629.01.T01:five_prime_UTR
TTTCCTGTAGCTTTGTGGCA+TGG 0.496064 1:+8858577 MsG0180000629.01.T01:intron
CGGGTACGGGAGAAAGAAGG+GGG 0.496168 1:+8856458 MsG0180000629.01.T01:five_prime_UTR
CACTTCCTGTGAAGAGCCCA+TGG 0.499204 1:-8860802 None:intergenic
TTGTATTTGTCCCATGCATA+GGG 0.499350 1:-8861482 None:intergenic
TTCCTTGAGTCTCTCTTGTG+AGG 0.500081 1:-8860835 None:intergenic
AACTGATTGGCCCTATGCAT+GGG 0.502435 1:+8861472 MsG0180000629.01.T01:three_prime_UTR
TGGAGTTCAAAGCTGGAGTA+AGG 0.503066 1:+8861310 MsG0180000629.01.T01:three_prime_UTR
AACGGGTACGGGAGAAAGAA+GGG 0.509081 1:+8856456 MsG0180000629.01.T01:five_prime_UTR
TGATGCAGATGGAAAGAAGA+AGG 0.510322 1:+8856873 MsG0180000629.01.T01:CDS
TAGAGCCCAAAACCATAGTA+AGG 0.510429 1:-8858631 None:intergenic
CAACTGATTGGCCCTATGCA+TGG 0.512282 1:+8861471 MsG0180000629.01.T01:three_prime_UTR
CTCTGGTGTATGCAGCAAGA+AGG 0.513021 1:-8861069 None:intergenic
TTTAACTTCTTCAGATTCAG+TGG 0.515006 1:+8861094 MsG0180000629.01.T01:three_prime_UTR
TATATATGAGACTATGAACT+TGG 0.515801 1:+8861676 MsG0180000629.01.T01:three_prime_UTR
AGCTTGATGGAGTTCAAAGC+TGG 0.517462 1:+8861303 MsG0180000629.01.T01:three_prime_UTR
GGGAATGCATTGTTCAAAGC+TGG 0.521453 1:+8856900 MsG0180000629.01.T01:CDS
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 1:-8858617 None:intergenic
ATGCAAGTTGAGGAAGAAGA+AGG 0.525389 1:-8856512 None:intergenic
GAGAGGGAGTATGCAAGTTG+AGG 0.526483 1:-8856522 None:intergenic
CATGCATAGGGCCAATCAGT+TGG 0.529277 1:-8861470 None:intergenic
ACACTGATACAAGAGCTTGA+TGG 0.531030 1:+8861290 MsG0180000629.01.T01:three_prime_UTR
TTCTGCGAGAAGGGCCAGCA+TGG 0.534844 1:+8859226 MsG0180000629.01.T01:CDS
AAAGAAGATTGATGCAGATG+AGG 0.536126 1:+8856843 MsG0180000629.01.T01:CDS
CATGATACATGATATTAGAA+AGG 0.537035 1:+8861590 MsG0180000629.01.T01:three_prime_UTR
GATGGAAAGAAGAAGGAGAA+GGG 0.540411 1:+8856880 MsG0180000629.01.T01:CDS
TTGTCTGCATTCTGCGAGAA+GGG 0.540466 1:+8859217 MsG0180000629.01.T01:CDS
AGAAGAGAGGAAACGGGTAC+GGG 0.540644 1:+8856445 MsG0180000629.01.T01:five_prime_UTR
GAGGAAAGAATTGATGCAGA+TGG 0.541097 1:+8856862 MsG0180000629.01.T01:CDS
ATGATATTAGAAAGGATCCC+TGG 0.541869 1:+8861598 MsG0180000629.01.T01:three_prime_UTR
ACAGAAGTTAAAGAGAATCA+AGG 0.543151 1:+8856616 MsG0180000629.01.T01:five_prime_UTR
TGTAATAAATGGAGCAGCAA+AGG 0.543811 1:+8858337 MsG0180000629.01.T01:CDS
TCTAAAATGCAAGGGAAGAG+AGG 0.545819 1:+8860345 MsG0180000629.01.T01:CDS
CTGTCATTGAGCTGTTTGCA+AGG 0.548699 1:-8861402 None:intergenic
AGCAGTATTAGCTGTGACAA+AGG 0.549949 1:+8858373 MsG0180000629.01.T01:CDS
GTCGAGGGAGATGAGAAGAG+AGG 0.554823 1:+8856432 MsG0180000629.01.T01:five_prime_UTR
TGCAGACTATTTGTAAGCCA+GGG 0.558908 1:-8861615 None:intergenic
TGCATAGGGCCAATCAGTTG+GGG 0.559790 1:-8861468 None:intergenic
TGCTCCAAGCCTAAGTGAAG+AGG 0.559997 1:+8861143 MsG0180000629.01.T01:three_prime_UTR
GGCAAGCCATAAACAAACTC+AGG 0.560166 1:-8860865 None:intergenic
CAAAGCAGCTCTAAAATGCA+AGG 0.560883 1:+8860336 MsG0180000629.01.T01:CDS
AAGGATGTGCAGCCTTATGA+GGG 0.571624 1:-8861028 None:intergenic
ATTGTCTGCATTCTGCGAGA+AGG 0.573177 1:+8859216 MsG0180000629.01.T01:CDS
AAGCTTCAATTACTCAACAA+TGG 0.573660 1:-8856563 None:intergenic
AAAGAAGAAGGAAAACAGAA+CGG 0.574942 1:+8856368 MsG0180000629.01.T01:five_prime_UTR
CTTCAATTACTCAACAATGG+AGG 0.576182 1:-8856560 None:intergenic
GAGATGAGAAGAGAGGAAAC+GGG 0.576951 1:+8856439 MsG0180000629.01.T01:five_prime_UTR
AGATGGAAAGAAGAAGGAGA+AGG 0.577320 1:+8856879 MsG0180000629.01.T01:CDS
TCTGGTGTATGCAGCAAGAA+GGG 0.579600 1:-8861068 None:intergenic
GCCGCGGATCAAATTGGATA+CGG 0.582539 1:+8859186 MsG0180000629.01.T01:CDS
GGACAAATACAATTACTATG+AGG 0.586927 1:+8861493 MsG0180000629.01.T01:three_prime_UTR
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 1:+8858385 MsG0180000629.01.T01:CDS
CAAGACTTTCAATATATGCA+TGG 0.601988 1:+8861763 MsG0180000629.01.T01:three_prime_UTR
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 1:+8858344 MsG0180000629.01.T01:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 1:-8858605 None:intergenic
AATAAATGGAGCAGCAAAGG+AGG 0.611168 1:+8858340 MsG0180000629.01.T01:CDS
GAACGGACAGAGAAGAAGAG+AGG 0.626046 1:+8856385 MsG0180000629.01.T01:five_prime_UTR
ACCGTATCCAATTTGATCCG+CGG 0.631428 1:-8859187 None:intergenic
CTTACAACCTGCATCCTCGA+AGG 0.638582 1:+8860467 MsG0180000629.01.T01:CDS
CAAGTTGAGGAAGAAGAAGG+AGG 0.639497 1:-8856509 None:intergenic
AAAGCAGCTCTAAAATGCAA+GGG 0.646780 1:+8860337 MsG0180000629.01.T01:CDS
CATGAACCTAAAGAAAACAA+AGG 0.659528 1:+8860412 MsG0180000629.01.T01:CDS
AGCCTCACAAGAGAGACTCA+AGG 0.664869 1:+8860833 MsG0180000629.01.T01:CDS
AAAGCGTTGTGTACATGCCG+CGG 0.666394 1:+8859170 MsG0180000629.01.T01:CDS
TGTATGCAGCAAGAAGGGTG+AGG 0.675322 1:-8861063 None:intergenic
GGGTACGGGAGAAAGAAGGG+GGG 0.675465 1:+8856459 MsG0180000629.01.T01:five_prime_UTR
AGAAGAACGGGAAAGAAGGG+AGG 0.692709 1:+8856410 MsG0180000629.01.T01:five_prime_UTR
GCATAGGGCCAATCAGTTGG+GGG 0.712704 1:-8861467 None:intergenic
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 1:+8858380 MsG0180000629.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGTTTTATTGATTTTA+AGG + Chr1:8857181-8857200 MsG0180000629.01.T01:intron 10.0%
!!! AATTGTTTTATTGATTTTAA+GGG + Chr1:8857182-8857201 MsG0180000629.01.T01:intron 10.0%
!!! ATAATATGATGATATTTTAT+AGG - Chr1:8861650-8861669 None:intergenic 10.0%
!! AAAAACATAGTAAATTATGA+TGG - Chr1:8860587-8860606 None:intergenic 15.0%
!! AAAATCAATAAAACAATTTC+TGG - Chr1:8857180-8857199 None:intergenic 15.0%
!! ATATGGTATAAGTATTTAAT+CGG - Chr1:8861380-8861399 None:intergenic 15.0%
!! GAATTGATGTAAAAATAAAT+GGG + Chr1:8857025-8857044 MsG0180000629.01.T01:intron 15.0%
!! TATATAAGCACTTAATTAAA+TGG + Chr1:8858541-8858560 MsG0180000629.01.T01:intron 15.0%
!! TGAATTGATGTAAAAATAAA+TGG + Chr1:8857024-8857043 MsG0180000629.01.T01:intron 15.0%
!!! AAATTTCTTAGATTTTCTAT+AGG + Chr1:8859893-8859912 MsG0180000629.01.T01:intron 15.0%
!!! CAAGTAAAATATTTAAGTTA+TGG + Chr1:8860654-8860673 MsG0180000629.01.T01:intron 15.0%
!! AAGAAAAAGAAAAAAGAAGA+AGG + Chr1:8856356-8856375 MsG0180000629.01.T01:five_prime_UTR 20.0%
!! AAGTTGAAGTGTAAATTAAA+TGG + Chr1:8858881-8858900 MsG0180000629.01.T01:intron 20.0%
!! AGAAGATATATTGCAAAATA+TGG + Chr1:8857819-8857838 MsG0180000629.01.T01:intron 20.0%
!! AGAGATAAAGTATGTTATAT+TGG + Chr1:8857631-8857650 MsG0180000629.01.T01:intron 20.0%
!! AGTAAAGGAAAGATAATAAT+AGG + Chr1:8861535-8861554 MsG0180000629.01.T01:three_prime_UTR 20.0%
!! ATAACAAACGAAATATTTGA+TGG + Chr1:8861425-8861444 MsG0180000629.01.T01:three_prime_UTR 20.0%
!! ATATTTGAATTAATGCCATT+TGG - Chr1:8860684-8860703 None:intergenic 20.0%
!! CAATAACAATACTAATTACT+TGG + Chr1:8857086-8857105 MsG0180000629.01.T01:intron 20.0%
!! CATAGTAATAAAAAATAGCA+TGG - Chr1:8860737-8860756 None:intergenic 20.0%
!! CTACAGGAAAATAAAAAATT+AGG - Chr1:8858567-8858586 None:intergenic 20.0%
!! CTTCTTGAAACAATTTAATT+TGG - Chr1:8857804-8857823 None:intergenic 20.0%
!! GAGATAAAGTATGTTATATT+GGG + Chr1:8857632-8857651 MsG0180000629.01.T01:intron 20.0%
!! GCAAATTATTATAAGAGTAA+AGG + Chr1:8861520-8861539 MsG0180000629.01.T01:three_prime_UTR 20.0%
!! GTAAAGGAAAGATAATAATA+GGG + Chr1:8861536-8861555 MsG0180000629.01.T01:three_prime_UTR 20.0%
!! GTTATATTTGTAGAATTATG+CGG + Chr1:8859083-8859102 MsG0180000629.01.T01:intron 20.0%
!! TTAAAATATGAATGTTTGTC+CGG + Chr1:8859604-8859623 MsG0180000629.01.T01:intron 20.0%
!!! AAATTCTGGAAAAACATTTT+TGG - Chr1:8857120-8857139 None:intergenic 20.0%
!!! AAGGGTTTGATTTTTTTATT+AGG + Chr1:8857200-8857219 MsG0180000629.01.T01:intron 20.0%
!!! ACAAACATTCATATTTTAAG+TGG - Chr1:8859603-8859622 None:intergenic 20.0%
!!! AGGGTTTGATTTTTTTATTA+GGG + Chr1:8857201-8857220 MsG0180000629.01.T01:intron 20.0%
!!! AGTTTTTAAAGCAATTTTCA+TGG + Chr1:8858987-8859006 MsG0180000629.01.T01:intron 20.0%
!!! GTTTTTCCAGAATTTTTTTT+TGG + Chr1:8857125-8857144 MsG0180000629.01.T01:intron 20.0%
!!! TTCAATTTTCGTTTTTGATT+TGG + Chr1:8856652-8856671 MsG0180000629.01.T01:intron 20.0%
! AAATGCCAAAAAAGAACAAA+TGG - Chr1:8859405-8859424 None:intergenic 25.0%
! AACAGAAGATAGTTGATTAT+TGG + Chr1:8860891-8860910 MsG0180000629.01.T01:three_prime_UTR 25.0%
! AACCCAATCAAACAAAAAAA+AGG - Chr1:8856692-8856711 None:intergenic 25.0%
! AATCAACTATCTTCTGTTAT+AGG - Chr1:8860889-8860908 None:intergenic 25.0%
! ACATAATGAAACAAATCAGA+AGG - Chr1:8859984-8860003 None:intergenic 25.0%
! ACCCAATCAAACAAAAAAAA+GGG - Chr1:8856691-8856710 None:intergenic 25.0%
! AGTATATGACAATGTAAAAC+AGG + Chr1:8858806-8858825 MsG0180000629.01.T01:intron 25.0%
! AGTGTAAATTAAATGGTTCT+TGG + Chr1:8858888-8858907 MsG0180000629.01.T01:intron 25.0%
! ATAAAAATGAACAAAAGCAG+AGG - Chr1:8858029-8858048 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG - Chr1:8858620-8858639 None:intergenic 25.0%
! ATGCAAATTTACTTCAATAC+TGG - Chr1:8860632-8860651 None:intergenic 25.0%
! CATAATATAGTCTTCAATCT+TGG - Chr1:8859048-8859067 None:intergenic 25.0%
! CATGATACATGATATTAGAA+AGG + Chr1:8861590-8861609 MsG0180000629.01.T01:three_prime_UTR 25.0%
! CTAGATATAAGTAAAACACA+AGG - Chr1:8857887-8857906 None:intergenic 25.0%
! CTGTAATAATATTGATCCTA+TGG - Chr1:8859470-8859489 None:intergenic 25.0%
! CTTCAACTTAAATGCATATT+TGG - Chr1:8858870-8858889 None:intergenic 25.0%
! GTTATCTTTAAACTTATTCC+AGG + Chr1:8860773-8860792 MsG0180000629.01.T01:intron 25.0%
! TAGAAAACAAAGTTTACAAG+TGG + Chr1:8857904-8857923 MsG0180000629.01.T01:intron 25.0%
! TATACTAAATGACCTTACTA+TGG + Chr1:8858619-8858638 MsG0180000629.01.T01:CDS 25.0%
! TATATATGAGACTATGAACT+TGG + Chr1:8861676-8861695 MsG0180000629.01.T01:three_prime_UTR 25.0%
! TATCATGTATCTCTTATGAT+AGG - Chr1:8861577-8861596 None:intergenic 25.0%
! TCGAAACCAAAAAAAAATTC+TGG - Chr1:8857134-8857153 None:intergenic 25.0%
! TCTAAGAAATTTCTTTACCA+TGG - Chr1:8859885-8859904 None:intergenic 25.0%
! TCTTATACTGCAATACTAAA+TGG + Chr1:8857508-8857527 MsG0180000629.01.T01:intron 25.0%
! TGAATTAGCAATAACAAACT+TGG + Chr1:8858676-8858695 MsG0180000629.01.T01:intron 25.0%
! TGATGTAAAAATAAATGGGT+TGG + Chr1:8857029-8857048 MsG0180000629.01.T01:intron 25.0%
! TGTTTCAAAAAAACCTATGT+CGG + Chr1:8859833-8859852 MsG0180000629.01.T01:intron 25.0%
! TTAAGTTATGGAAAACCAAA+TGG + Chr1:8860666-8860685 MsG0180000629.01.T01:intron 25.0%
! TTCTGTACTAAAATTCAACA+TGG - Chr1:8858196-8858215 None:intergenic 25.0%
! TTTAGTATAGGTATTTCAAG+AGG - Chr1:8858608-8858627 None:intergenic 25.0%
! TTTGTTTCATTATGTTCTTC+AGG + Chr1:8859989-8860008 MsG0180000629.01.T01:intron 25.0%
!! GATGTAAAAATAAATGGGTT+GGG + Chr1:8857030-8857049 MsG0180000629.01.T01:intron 25.0%
!! TTGTTTCTTCTTCACTATAT+AGG + Chr1:8859129-8859148 MsG0180000629.01.T01:intron 25.0%
!!! AAACAAAAAAAAGGGTATTG+TGG - Chr1:8856683-8856702 None:intergenic 25.0%
!!! AATCGATGGTTTTTTTTTGT+GGG + Chr1:8856800-8856819 MsG0180000629.01.T01:exon 25.0%
!!! ACCCTTTTTTTTGTTTGATT+GGG + Chr1:8856687-8856706 MsG0180000629.01.T01:intron 25.0%
!!! ATAGCTAAGCCATTTTTTAA+AGG + Chr1:8860160-8860179 MsG0180000629.01.T01:intron 25.0%
!!! ATATTGGACAGGTTTTTTTT+TGG + Chr1:8858446-8858465 MsG0180000629.01.T01:intron 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG + Chr1:8859404-8859423 MsG0180000629.01.T01:intron 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG + Chr1:8859397-8859416 MsG0180000629.01.T01:intron 25.0%
!!! GAATTTTTTTTTGGTTTCGA+TGG + Chr1:8857134-8857153 MsG0180000629.01.T01:intron 25.0%
!!! TAATCGATGGTTTTTTTTTG+TGG + Chr1:8856799-8856818 MsG0180000629.01.T01:exon 25.0%
!!! TACCCTTTTTTTTGTTTGAT+TGG + Chr1:8856686-8856705 MsG0180000629.01.T01:intron 25.0%
!!! TATTGGACAGGTTTTTTTTT+GGG + Chr1:8858447-8858466 MsG0180000629.01.T01:intron 25.0%
!!! TCTTTTTTCGAGAAATTAGA+AGG + Chr1:8860984-8861003 MsG0180000629.01.T01:three_prime_UTR 25.0%
!!! TGATATCCTTTGTTTTCTTT+AGG - Chr1:8860421-8860440 None:intergenic 25.0%
!!! TTTAATTGAGTGTTTTTTCC+TGG + Chr1:8856768-8856787 MsG0180000629.01.T01:intron 25.0%
!!! TTTTTTTTTGGGAGAGATTA+TGG + Chr1:8858458-8858477 MsG0180000629.01.T01:intron 25.0%
AAAACATTGCACTCAGTTTA+CGG + Chr1:8857692-8857711 MsG0180000629.01.T01:intron 30.0%
AAAATCCTCTGAATTTACTC+AGG + Chr1:8857723-8857742 MsG0180000629.01.T01:intron 30.0%
AAAATGGCTTAGCTATGAAA+AGG - Chr1:8860156-8860175 None:intergenic 30.0%
AAAGAAGAAGGAAAACAGAA+CGG + Chr1:8856368-8856387 MsG0180000629.01.T01:five_prime_UTR 30.0%
AACCATGTATAGATGTCATA+AGG + Chr1:8857584-8857603 MsG0180000629.01.T01:intron 30.0%
AACCTTATGACATCTATACA+TGG - Chr1:8857549-8857568 None:intergenic 30.0%
AAGACTGAGAGTTTATTTAG+TGG + Chr1:8858913-8858932 MsG0180000629.01.T01:intron 30.0%
AAGCTTCAATTACTCAACAA+TGG - Chr1:8856566-8856585 None:intergenic 30.0%
ACAAATAGTCTGCAATGAAA+AGG + Chr1:8861624-8861643 MsG0180000629.01.T01:three_prime_UTR 30.0%
ACAGAAGTTAAAGAGAATCA+AGG + Chr1:8856616-8856635 MsG0180000629.01.T01:five_prime_UTR 30.0%
ACTATATAGGCAACAACATT+TGG + Chr1:8859142-8859161 MsG0180000629.01.T01:intron 30.0%
AGACACCAAAGTTTAATACA+TGG - Chr1:8857424-8857443 None:intergenic 30.0%
AGACTGAGAGTTTATTTAGT+GGG + Chr1:8858914-8858933 MsG0180000629.01.T01:intron 30.0%
AGGATCAATATTATTACAGC+AGG + Chr1:8859471-8859490 MsG0180000629.01.T01:intron 30.0%
AGTGAAGAAGAAACAATCAA+TGG - Chr1:8859125-8859144 None:intergenic 30.0%
ATCTTAACACATTACAGACA+AGG - Chr1:8860272-8860291 None:intergenic 30.0%
ATGCTCCATGTATTAAACTT+TGG + Chr1:8857416-8857435 MsG0180000629.01.T01:intron 30.0%
ATGTCCATCATCTAATGTAT+GGG + Chr1:8859940-8859959 MsG0180000629.01.T01:intron 30.0%
ATTTGGTTAACTATAACGTC+AGG + Chr1:8859421-8859440 MsG0180000629.01.T01:intron 30.0%
CAAGACTTTCAATATATGCA+TGG + Chr1:8861763-8861782 MsG0180000629.01.T01:three_prime_UTR 30.0%
CAAGTCTACATTCTGTTTAT+AGG + Chr1:8857376-8857395 MsG0180000629.01.T01:intron 30.0%
CATGAACCTAAAGAAAACAA+AGG + Chr1:8860412-8860431 MsG0180000629.01.T01:CDS 30.0%
GATTCTTAATTAGCTAGCAA+TGG + Chr1:8858936-8858955 MsG0180000629.01.T01:intron 30.0%
GGACAAATACAATTACTATG+AGG + Chr1:8861493-8861512 MsG0180000629.01.T01:three_prime_UTR 30.0%
GTATAGATGTCATAAGGAAA+GGG + Chr1:8857590-8857609 MsG0180000629.01.T01:intron 30.0%
GTTGTACTTGACAAATTAGA+AGG - Chr1:8859683-8859702 None:intergenic 30.0%
TAAATTTGCAACTGTATCAG+AGG - Chr1:8860050-8860069 None:intergenic 30.0%
TAATAATAGGGTTTCCAGAT+AGG + Chr1:8861548-8861567 MsG0180000629.01.T01:three_prime_UTR 30.0%
TACATAGCAGAAATTCTTTG+AGG + Chr1:8860938-8860957 MsG0180000629.01.T01:three_prime_UTR 30.0%
TAGAGAAATTACACATTTCC+TGG + Chr1:8859801-8859820 MsG0180000629.01.T01:intron 30.0%
TATGTCCATCATCTAATGTA+TGG + Chr1:8859939-8859958 MsG0180000629.01.T01:intron 30.0%
TCTGAAGAAGTTAAAATCTC+TGG - Chr1:8861089-8861108 None:intergenic 30.0%
TGTAAAACAGGTTTGAATTC+TGG + Chr1:8858818-8858837 MsG0180000629.01.T01:intron 30.0%
TGTATAGATGTCATAAGGAA+AGG + Chr1:8857589-8857608 MsG0180000629.01.T01:intron 30.0%
TTCCTTATGACATCTATACA+TGG - Chr1:8857589-8857608 None:intergenic 30.0%
TTTGGTTAACTATAACGTCA+GGG + Chr1:8859422-8859441 MsG0180000629.01.T01:intron 30.0%
! AAAGCAATTTTCATGGCTAA+AGG + Chr1:8858994-8859013 MsG0180000629.01.T01:intron 30.0%
! AAATGACCTTACTATGGTTT+TGG + Chr1:8858625-8858644 MsG0180000629.01.T01:CDS 30.0%
! AATGACCTTACTATGGTTTT+GGG + Chr1:8858626-8858645 MsG0180000629.01.T01:CDS 30.0%
! ACTGACTTTGATCTGAATTT+GGG + Chr1:8860373-8860392 MsG0180000629.01.T01:CDS 30.0%
! CACAGTTTGCCTTTAAAAAA+TGG - Chr1:8860172-8860191 None:intergenic 30.0%
! TGTTGTTTGTAATGTGAAGA+TGG + Chr1:8858234-8858253 MsG0180000629.01.T01:intron 30.0%
! TTCAAACCTGAGTTTGTTTA+TGG + Chr1:8860859-8860878 MsG0180000629.01.T01:exon 30.0%
! TTTAACTTCTTCAGATTCAG+TGG + Chr1:8861094-8861113 MsG0180000629.01.T01:three_prime_UTR 30.0%
! TTTGTAGAATTATGCGGTTT+TGG + Chr1:8859089-8859108 MsG0180000629.01.T01:intron 30.0%
!! ATGATTGTGTCACTTTGTTT+AGG + Chr1:8857449-8857468 MsG0180000629.01.T01:intron 30.0%
!! GAAATATTTGATGGTGCTAA+AGG + Chr1:8861434-8861453 MsG0180000629.01.T01:three_prime_UTR 30.0%
!! TGATTGTGTCACTTTGTTTA+GGG + Chr1:8857450-8857469 MsG0180000629.01.T01:intron 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG + Chr1:8858572-8858591 MsG0180000629.01.T01:intron 30.0%
!! TTTTCTTTAGGTTCATGTAC+TGG - Chr1:8860409-8860428 None:intergenic 30.0%
AAAGAAGATTGATGCAGATG+AGG + Chr1:8856843-8856862 MsG0180000629.01.T01:CDS 35.0%
AAAGAGAATCAAGGTGAGTT+GGG + Chr1:8856625-8856644 MsG0180000629.01.T01:intron 35.0%
AATATGGACATTGCTCTTGA+TGG + Chr1:8857835-8857854 MsG0180000629.01.T01:intron 35.0%
ACATTACAGACAAGGTAAGA+CGG - Chr1:8860264-8860283 None:intergenic 35.0%
ACATTGTCATATACTGCAGA+AGG - Chr1:8858801-8858820 None:intergenic 35.0%
ACTAACCTGAGTAAATTCAG+AGG - Chr1:8857731-8857750 None:intergenic 35.0%
ACTTCAAGTGATAGGACAAT+AGG + Chr1:8859022-8859041 MsG0180000629.01.T01:intron 35.0%
AGATCCCATACATTAGATGA+TGG - Chr1:8859947-8859966 None:intergenic 35.0%
AGCTATTGATACTCAACATG+TGG + Chr1:8858418-8858437 MsG0180000629.01.T01:intron 35.0%
AGGAAACAACTTCAAGTGAT+AGG + Chr1:8859014-8859033 MsG0180000629.01.T01:intron 35.0%
ATATTCCACTCCTTGATCAA+CGG - Chr1:8860101-8860120 None:intergenic 35.0%
ATGATATTAGAAAGGATCCC+TGG + Chr1:8861598-8861617 MsG0180000629.01.T01:three_prime_UTR 35.0%
ATTACAACCTGTTCCACAAA+GGG - Chr1:8858323-8858342 None:intergenic 35.0%
ATTGTATTTGTCCCATGCAT+AGG - Chr1:8861486-8861505 None:intergenic 35.0%
CAAACCAAATTGTTATCGGT+AGG - Chr1:8859859-8859878 None:intergenic 35.0%
CATTGTCATATACTGCAGAA+GGG - Chr1:8858800-8858819 None:intergenic 35.0%
CCAATATGTTTCTCTCTTTC+TGG + Chr1:8860297-8860316 MsG0180000629.01.T01:CDS 35.0%
CCAGAAAGAGAGAAACATAT+TGG - Chr1:8860300-8860319 None:intergenic 35.0%
CTATTGATACTCAACATGTG+GGG + Chr1:8858420-8858439 MsG0180000629.01.T01:intron 35.0%
CTTCAATTACTCAACAATGG+AGG - Chr1:8856563-8856582 None:intergenic 35.0%
GACCATGTATAGATGTCATA+AGG + Chr1:8857544-8857563 MsG0180000629.01.T01:intron 35.0%
GATTCTACTGTTTATGAGCT+TGG + Chr1:8858167-8858186 MsG0180000629.01.T01:intron 35.0%
GCAGATGATGATTACATATC+AGG + Chr1:8861257-8861276 MsG0180000629.01.T01:intron 35.0%
GCAGCAAACCAAATTGTTAT+CGG - Chr1:8859863-8859882 None:intergenic 35.0%
GCATGGAAATCTTATGACAT+AGG - Chr1:8860720-8860739 None:intergenic 35.0%
GCTATTGATACTCAACATGT+GGG + Chr1:8858419-8858438 MsG0180000629.01.T01:intron 35.0%
GGGAAAGACAACTCAAAAAA+TGG - Chr1:8860080-8860099 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG + Chr1:8858326-8858345 MsG0180000629.01.T01:intron 35.0%
TAAAGAGAATCAAGGTGAGT+TGG + Chr1:8856624-8856643 MsG0180000629.01.T01:intron 35.0%
TATACCTTTAAACTCCTTCG+AGG - Chr1:8860484-8860503 None:intergenic 35.0%
TATATTGGGAGAGAAAGCTA+AGG + Chr1:8857646-8857665 MsG0180000629.01.T01:intron 35.0%
TATTACAACCTGTTCCACAA+AGG - Chr1:8858324-8858343 None:intergenic 35.0%
TCAACATACTTATATGCAGC+TGG + Chr1:8858844-8858863 MsG0180000629.01.T01:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG + Chr1:8858337-8858356 MsG0180000629.01.T01:CDS 35.0%
TTATGATACCTGGATTCCAT+AGG - Chr1:8858003-8858022 None:intergenic 35.0%
TTATTCCAGGTTTCATCCAT+GGG + Chr1:8860786-8860805 MsG0180000629.01.T01:intron 35.0%
TTGGTTTCGATGGTGTATTA+GGG + Chr1:8857144-8857163 MsG0180000629.01.T01:intron 35.0%
TTGTAATGTGAAGATGGAAC+AGG + Chr1:8858240-8858259 MsG0180000629.01.T01:intron 35.0%
TTGTATTTGTCCCATGCATA+GGG - Chr1:8861485-8861504 None:intergenic 35.0%
! AAAGTTCTTGTCATTTGGTG+AGG + Chr1:8860196-8860215 MsG0180000629.01.T01:intron 35.0%
! AAGTTCTTGTCATTTGGTGA+GGG + Chr1:8860197-8860216 MsG0180000629.01.T01:intron 35.0%
! CCATCGATTAAGAAAAATCC+AGG - Chr1:8856789-8856808 None:intergenic 35.0%
! CCTGGATTTTTCTTAATCGA+TGG + Chr1:8856786-8856805 MsG0180000629.01.T01:intron 35.0%
! CTGGAAGAAATTGCTTTGAA+AGG - Chr1:8860613-8860632 None:intergenic 35.0%
! GACTGACTTTGATCTGAATT+TGG + Chr1:8860372-8860391 MsG0180000629.01.T01:CDS 35.0%
! TCAATTTTCAACACCCTTTG+TGG + Chr1:8858307-8858326 MsG0180000629.01.T01:intron 35.0%
! TCTTACATTTGCATTAGCCT+TGG - Chr1:8859545-8859564 None:intergenic 35.0%
! TTCTCTCTTTCTGGAAATCA+GGG + Chr1:8860306-8860325 MsG0180000629.01.T01:CDS 35.0%
! TTTCTCTCTTTCTGGAAATC+AGG + Chr1:8860305-8860324 MsG0180000629.01.T01:CDS 35.0%
! TTTGGTTTCGATGGTGTATT+AGG + Chr1:8857143-8857162 MsG0180000629.01.T01:intron 35.0%
!! AAAAATAAATGGGTTGGGAG+TGG + Chr1:8857035-8857054 MsG0180000629.01.T01:intron 35.0%
!! GCTCTAAAGTTCTTGTCATT+TGG + Chr1:8860191-8860210 MsG0180000629.01.T01:intron 35.0%
!!! ACAATGGAGGTTTTGAGTTA+TGG - Chr1:8856550-8856569 None:intergenic 35.0%
!!! CAATGGAGGTTTTGAGTTAT+GGG - Chr1:8856549-8856568 None:intergenic 35.0%
!!! GGTTTTTTTTTGTGGGTTTC+TGG + Chr1:8856807-8856826 MsG0180000629.01.T01:CDS 35.0%
AAGAAGAGAGGTGAGAAGAA+CGG + Chr1:8856397-8856416 MsG0180000629.01.T01:five_prime_UTR 40.0%
AATAAATGGAGCAGCAAAGG+AGG + Chr1:8858340-8858359 MsG0180000629.01.T01:CDS 40.0%
ACACCTGATAAGATCACATC+CGG - Chr1:8859626-8859645 None:intergenic 40.0%
ACACTGATACAAGAGCTTGA+TGG + Chr1:8861290-8861309 MsG0180000629.01.T01:three_prime_UTR 40.0%
AGATGGAAAGAAGAAGGAGA+AGG + Chr1:8856879-8856898 MsG0180000629.01.T01:CDS 40.0%
AGCAGTATTAGCTGTGACAA+AGG + Chr1:8858373-8858392 MsG0180000629.01.T01:CDS 40.0%
ATTAGAGAGCTAACCTAAGC+AGG - Chr1:8861231-8861250 None:intergenic 40.0%
ATTCCACAATTTCGACGTTG+CGG - Chr1:8859522-8859541 None:intergenic 40.0%
CAGATTCAGTGGAATCTGTA+AGG + Chr1:8861105-8861124 MsG0180000629.01.T01:three_prime_UTR 40.0%
CTTATGATAGGCATCCTATC+TGG - Chr1:8861565-8861584 None:intergenic 40.0%
CTTATTCCAGGTTTCATCCA+TGG + Chr1:8860785-8860804 MsG0180000629.01.T01:intron 40.0%
CTTTGATCTGAATTTGGGCA+TGG + Chr1:8860378-8860397 MsG0180000629.01.T01:CDS 40.0%
GAGACATTACCTCAAACACT+TGG - Chr1:8857067-8857086 None:intergenic 40.0%
GAGGAAAGAATTGATGCAGA+TGG + Chr1:8856862-8856881 MsG0180000629.01.T01:CDS 40.0%
GATGGAAAGAAGAAGGAGAA+GGG + Chr1:8856880-8856899 MsG0180000629.01.T01:CDS 40.0%
GGTGAGGTCTAAATCTTTCA+AGG - Chr1:8861050-8861069 None:intergenic 40.0%
TAAACTCACGACAGGTAATG+AGG + Chr1:8857965-8857984 MsG0180000629.01.T01:intron 40.0%
TAGAGCCCAAAACCATAGTA+AGG - Chr1:8858634-8858653 None:intergenic 40.0%
TATTCCACTCCTTGATCAAC+GGG - Chr1:8860100-8860119 None:intergenic 40.0%
TCAACATGTGGGGAAGATAT+TGG + Chr1:8858430-8858449 MsG0180000629.01.T01:intron 40.0%
TGATGCAGATGGAAAGAAGA+AGG + Chr1:8856873-8856892 MsG0180000629.01.T01:CDS 40.0%
TGCAGACTATTTGTAAGCCA+GGG - Chr1:8861618-8861637 None:intergenic 40.0%
TGTTCTATTGCAACCTGCTT+AGG + Chr1:8861215-8861234 MsG0180000629.01.T01:intron 40.0%
TTGCAGACTATTTGTAAGCC+AGG - Chr1:8861619-8861638 None:intergenic 40.0%
TTTCGATGGTGTATTAGGGT+TGG + Chr1:8857148-8857167 MsG0180000629.01.T01:intron 40.0%
TTTGATTCCCATAAAGCGTG+TGG + Chr1:8858139-8858158 MsG0180000629.01.T01:intron 40.0%
! ATGCAAGTTGAGGAAGAAGA+AGG - Chr1:8856515-8856534 None:intergenic 40.0%
! TATTGATCCTATGGAAGCGT+TGG - Chr1:8859461-8859480 None:intergenic 40.0%
! TTTGAAACAGTGCACATACC+AGG - Chr1:8859822-8859841 None:intergenic 40.0%
!! AACAATTTGGTTTGCTGCCA+TGG + Chr1:8859865-8859884 MsG0180000629.01.T01:intron 40.0%
!!! GTTTTGAGTTATGGGTGAGA+GGG - Chr1:8856541-8856560 None:intergenic 40.0%
AATATGCTCCCCCAACTGAT+TGG + Chr1:8861459-8861478 MsG0180000629.01.T01:three_prime_UTR 45.0%
ACCGTATCCAATTTGATCCG+CGG - Chr1:8859190-8859209 None:intergenic 45.0%
AGAAGAGAGGTGAGAAGAAC+GGG + Chr1:8856398-8856417 MsG0180000629.01.T01:five_prime_UTR 45.0%
AGCTTGATGGAGTTCAAAGC+TGG + Chr1:8861303-8861322 MsG0180000629.01.T01:three_prime_UTR 45.0%
ATAGCCTCTTCACTTAGGCT+TGG - Chr1:8861150-8861169 None:intergenic 45.0%
ATCCTGATCCACACGCTTTA+TGG - Chr1:8858150-8858169 None:intergenic 45.0%
ATGCATAGGGCCAATCAGTT+GGG - Chr1:8861472-8861491 None:intergenic 45.0%
ATGTGGGGAAGATATTGGAC+AGG + Chr1:8858435-8858454 MsG0180000629.01.T01:intron 45.0%
ATTGTCTGCATTCTGCGAGA+AGG + Chr1:8859216-8859235 MsG0180000629.01.T01:CDS 45.0%
CAATTTCGACGTTGCGGTAA+TGG - Chr1:8859516-8859535 None:intergenic 45.0%
CGTCGAAATTGTGGAATCCA+AGG + Chr1:8859525-8859544 MsG0180000629.01.T01:intron 45.0%
CTGTCATTGAGCTGTTTGCA+AGG - Chr1:8861405-8861424 None:intergenic 45.0%
CTTGCATAGCCTCTTCACTT+AGG - Chr1:8861155-8861174 None:intergenic 45.0%
GAATTGCGATTTGCAGTCCA+AGG + Chr1:8858748-8858767 MsG0180000629.01.T01:intron 45.0%
GAGATGAGAAGAGAGGAAAC+GGG + Chr1:8856439-8856458 MsG0180000629.01.T01:five_prime_UTR 45.0%
GAGCTGTTTGCAAGGCTATA+TGG - Chr1:8861397-8861416 None:intergenic 45.0%
GCAGAGGAGTTTATGATACC+TGG - Chr1:8858013-8858032 None:intergenic 45.0%
GCATCCTCGAAGGAGTTTAA+AGG + Chr1:8860477-8860496 MsG0180000629.01.T01:CDS 45.0%
GGAGATGAGAAGAGAGGAAA+CGG + Chr1:8856438-8856457 MsG0180000629.01.T01:five_prime_UTR 45.0%
GGCAAGCCATAAACAAACTC+AGG - Chr1:8860868-8860887 None:intergenic 45.0%
GGGAATGCATTGTTCAAAGC+TGG + Chr1:8856900-8856919 MsG0180000629.01.T01:CDS 45.0%
GTAGACAACACACATGCACA+AGG - Chr1:8860230-8860249 None:intergenic 45.0%
GTCATCGATAAACTCACGAC+AGG + Chr1:8857957-8857976 MsG0180000629.01.T01:intron 45.0%
GTGAAATCGACTAAACGCTG+TGG - Chr1:8858774-8858793 None:intergenic 45.0%
GTGAGAAGAACGGGAAAGAA+GGG + Chr1:8856407-8856426 MsG0180000629.01.T01:five_prime_UTR 45.0%
GTTGTCTTTCCCGTTGATCA+AGG + Chr1:8860088-8860107 MsG0180000629.01.T01:intron 45.0%
TCCAGAAACTTCCATTCCTC+TGG - Chr1:8858399-8858418 None:intergenic 45.0%
TCCTGATCCACACGCTTTAT+GGG - Chr1:8858149-8858168 None:intergenic 45.0%
TCGGCCTACCGATAACAATT+TGG + Chr1:8859852-8859871 MsG0180000629.01.T01:intron 45.0%
TCTGGTGTATGCAGCAAGAA+GGG - Chr1:8861071-8861090 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG + Chr1:8861310-8861329 MsG0180000629.01.T01:three_prime_UTR 45.0%
TGTCCGGATGTGATCTTATC+AGG + Chr1:8859620-8859639 MsG0180000629.01.T01:intron 45.0%
TTAAACTCCTTCGAGGATGC+AGG - Chr1:8860477-8860496 None:intergenic 45.0%
TTACCGCAACGTCGAAATTG+TGG + Chr1:8859516-8859535 MsG0180000629.01.T01:intron 45.0%
TTCAACACCCTTTGTGGAAC+AGG + Chr1:8858313-8858332 MsG0180000629.01.T01:intron 45.0%
TTCCTTGAGTCTCTCTTGTG+AGG - Chr1:8860838-8860857 None:intergenic 45.0%
TTGTCTGCATTCTGCGAGAA+GGG + Chr1:8859217-8859236 MsG0180000629.01.T01:CDS 45.0%
! AACTGATTGGCCCTATGCAT+GGG + Chr1:8861472-8861491 MsG0180000629.01.T01:three_prime_UTR 45.0%
! AAGGATGTGCAGCCTTATGA+GGG - Chr1:8861031-8861050 None:intergenic 45.0%
! ACTATAACGTCAGGGTGTCT+TGG + Chr1:8859430-8859449 MsG0180000629.01.T01:intron 45.0%
! CAAGTTGAGGAAGAAGAAGG+AGG - Chr1:8856512-8856531 None:intergenic 45.0%
! GTGTAGAGCATTCCCTCATA+AGG + Chr1:8861016-8861035 MsG0180000629.01.T01:three_prime_UTR 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG + Chr1:8858577-8858596 MsG0180000629.01.T01:intron 45.0%
!!! GGTTTTGAGTTATGGGTGAG+AGG - Chr1:8856542-8856561 None:intergenic 45.0%
!!! GGTTTTGGGCTCTATATCTC+AGG + Chr1:8858640-8858659 MsG0180000629.01.T01:CDS 45.0%
!!! TTTTACTAATATATTAAATT+TGG - Chr1:8860528-8860547 None:intergenic 5.0%
AAACGGGTACGGGAGAAAGA+AGG + Chr1:8856455-8856474 MsG0180000629.01.T01:five_prime_UTR 50.0%
AACGGGTACGGGAGAAAGAA+GGG + Chr1:8856456-8856475 MsG0180000629.01.T01:five_prime_UTR 50.0%
AAGAGCCCATGGATGAAACC+TGG - Chr1:8860794-8860813 None:intergenic 50.0%
AATGGAGCAGCAAAGGAGGT+AGG + Chr1:8858344-8858363 MsG0180000629.01.T01:CDS 50.0%
ACACACATGCACAAGGTGGT+TGG - Chr1:8860223-8860242 None:intergenic 50.0%
AGAAGAACGGGAAAGAAGGG+AGG + Chr1:8856410-8856429 MsG0180000629.01.T01:five_prime_UTR 50.0%
AGAAGAGAGGAAACGGGTAC+GGG + Chr1:8856445-8856464 MsG0180000629.01.T01:five_prime_UTR 50.0%
AGCCTCACAAGAGAGACTCA+AGG + Chr1:8860833-8860852 MsG0180000629.01.T01:CDS 50.0%
CATGCATAGGGCCAATCAGT+TGG - Chr1:8861473-8861492 None:intergenic 50.0%
CTCTGGTGTATGCAGCAAGA+AGG - Chr1:8861072-8861091 None:intergenic 50.0%
CTTACAACCTGCATCCTCGA+AGG + Chr1:8860467-8860486 MsG0180000629.01.T01:CDS 50.0%
CTTCCATGCCACAAAGCTAC+AGG - Chr1:8858583-8858602 None:intergenic 50.0%
CTTTCCCGTTGATCAAGGAG+TGG + Chr1:8860093-8860112 MsG0180000629.01.T01:intron 50.0%
GAACGGACAGAGAAGAAGAG+AGG + Chr1:8856385-8856404 MsG0180000629.01.T01:five_prime_UTR 50.0%
GACAACACACATGCACAAGG+TGG - Chr1:8860227-8860246 None:intergenic 50.0%
GAGAAGAGAGGAAACGGGTA+CGG + Chr1:8856444-8856463 MsG0180000629.01.T01:five_prime_UTR 50.0%
GCCAGAGGAATGGAAGTTTC+TGG + Chr1:8858395-8858414 MsG0180000629.01.T01:CDS 50.0%
GCCGCGGATCAAATTGGATA+CGG + Chr1:8859186-8859205 MsG0180000629.01.T01:CDS 50.0%
GGTGAGAAGAACGGGAAAGA+AGG + Chr1:8856406-8856425 MsG0180000629.01.T01:five_prime_UTR 50.0%
GTACATGCCGCGGATCAAAT+TGG + Chr1:8859180-8859199 MsG0180000629.01.T01:CDS 50.0%
TCCCATAAAGCGTGTGGATC+AGG + Chr1:8858145-8858164 MsG0180000629.01.T01:intron 50.0%
TGCATAGGGCCAATCAGTTG+GGG - Chr1:8861471-8861490 None:intergenic 50.0%
TGCTCCAAGCCTAAGTGAAG+AGG + Chr1:8861143-8861162 MsG0180000629.01.T01:three_prime_UTR 50.0%
TGGCACTCACCAAGTGTTTG+AGG + Chr1:8857055-8857074 MsG0180000629.01.T01:intron 50.0%
TGTATGCAGCAAGAAGGGTG+AGG - Chr1:8861066-8861085 None:intergenic 50.0%
TGTGACAAAGGCCAGAGGAA+TGG + Chr1:8858385-8858404 MsG0180000629.01.T01:CDS 50.0%
TGTTATCGGTAGGCCGACAT+AGG - Chr1:8859849-8859868 None:intergenic 50.0%
TTAGCTGTGACAAAGGCCAG+AGG + Chr1:8858380-8858399 MsG0180000629.01.T01:CDS 50.0%
TTCATCCATGGGCTCTTCAC+AGG + Chr1:8860797-8860816 MsG0180000629.01.T01:CDS 50.0%
! CAACTGATTGGCCCTATGCA+TGG + Chr1:8861471-8861490 MsG0180000629.01.T01:three_prime_UTR 50.0%
! CAAGGATGTGCAGCCTTATG+AGG - Chr1:8861032-8861051 None:intergenic 50.0%
! GAGAGGGAGTATGCAAGTTG+AGG - Chr1:8856525-8856544 None:intergenic 50.0%
!! AAAGCGTTGTGTACATGCCG+CGG + Chr1:8859170-8859189 MsG0180000629.01.T01:CDS 50.0%
ACGGGTACGGGAGAAAGAAG+GGG + Chr1:8856457-8856476 MsG0180000629.01.T01:five_prime_UTR 55.0%
CACTTCCTGTGAAGAGCCCA+TGG - Chr1:8860805-8860824 None:intergenic 55.0%
CATGGGCTCTTCACAGGAAG+TGG + Chr1:8860803-8860822 MsG0180000629.01.T01:CDS 55.0%
CTGAGTCGCCTATGGAATCC+AGG + Chr1:8857992-8858011 MsG0180000629.01.T01:intron 55.0%
GAGGACTTCTGAGTCGCCTA+TGG + Chr1:8857984-8858003 MsG0180000629.01.T01:intron 55.0%
GCATAGGGCCAATCAGTTGG+GGG - Chr1:8861470-8861489 None:intergenic 55.0%
GGTTGCTCCAACGCTTCCAT+AGG + Chr1:8859451-8859470 MsG0180000629.01.T01:intron 55.0%
GTCGAGGGAGATGAGAAGAG+AGG + Chr1:8856432-8856451 MsG0180000629.01.T01:five_prime_UTR 55.0%
TCGACTAAACGCTGTGGCCT+TGG - Chr1:8858768-8858787 None:intergenic 55.0%
AAGGGCCAGCATGGTGAGCA+AGG + Chr1:8859235-8859254 MsG0180000629.01.T01:intron 60.0%
ACGGGAAAGAAGGGAGGTCG+AGG + Chr1:8856416-8856435 MsG0180000629.01.T01:five_prime_UTR 60.0%
AGGGCCAGCATGGTGAGCAA+GGG + Chr1:8859236-8859255 MsG0180000629.01.T01:intron 60.0%
CGGGAAAGAAGGGAGGTCGA+GGG + Chr1:8856417-8856436 MsG0180000629.01.T01:five_prime_UTR 60.0%
CGGGTACGGGAGAAAGAAGG+GGG + Chr1:8856458-8856477 MsG0180000629.01.T01:five_prime_UTR 60.0%
GGGTACGGGAGAAAGAAGGG+GGG + Chr1:8856459-8856478 MsG0180000629.01.T01:five_prime_UTR 60.0%
TCACCCCTTGCTCACCATGC+TGG - Chr1:8859243-8859262 None:intergenic 60.0%
TTCTGCGAGAAGGGCCAGCA+TGG + Chr1:8859226-8859245 MsG0180000629.01.T01:CDS 60.0%
GGGCCAGCATGGTGAGCAAG+GGG + Chr1:8859237-8859256 MsG0180000629.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 8856351 8861786 8856351 ID=MsG0180000629.01;Name=MsG0180000629.01
Chr1 mRNA 8856351 8861786 8856351 ID=MsG0180000629.01.T01;Parent=MsG0180000629.01;Name=MsG0180000629.01.T01;_AED=0.26;_eAED=0.26;_QI=301|0.57|0.62|1|0.71|0.5|8|844|224
Chr1 exon 8861261 8861786 8861261 ID=MsG0180000629.01.T01:exon:2186;Parent=MsG0180000629.01.T01
Chr1 exon 8860795 8861187 8860795 ID=MsG0180000629.01.T01:exon:2185;Parent=MsG0180000629.01.T01
Chr1 exon 8860290 8860498 8860290 ID=MsG0180000629.01.T01:exon:2184;Parent=MsG0180000629.01.T01
Chr1 exon 8859151 8859247 8859151 ID=MsG0180000629.01.T01:exon:2183;Parent=MsG0180000629.01.T01
Chr1 exon 8858587 8858661 8858587 ID=MsG0180000629.01.T01:exon:2182;Parent=MsG0180000629.01.T01
Chr1 exon 8858335 8858436 8858335 ID=MsG0180000629.01.T01:exon:2181;Parent=MsG0180000629.01.T01
Chr1 exon 8856791 8856921 8856791 ID=MsG0180000629.01.T01:exon:2180;Parent=MsG0180000629.01.T01
Chr1 exon 8856351 8856637 8856351 ID=MsG0180000629.01.T01:exon:2179;Parent=MsG0180000629.01.T01
Chr1 five_prime_UTR 8856351 8856637 8856351 ID=MsG0180000629.01.T01:five_prime_utr;Parent=MsG0180000629.01.T01
Chr1 five_prime_UTR 8856791 8856804 8856791 ID=MsG0180000629.01.T01:five_prime_utr;Parent=MsG0180000629.01.T01
Chr1 CDS 8856805 8856921 8856805 ID=MsG0180000629.01.T01:cds;Parent=MsG0180000629.01.T01
Chr1 CDS 8858335 8858436 8858335 ID=MsG0180000629.01.T01:cds;Parent=MsG0180000629.01.T01
Chr1 CDS 8858587 8858661 8858587 ID=MsG0180000629.01.T01:cds;Parent=MsG0180000629.01.T01
Chr1 CDS 8859151 8859247 8859151 ID=MsG0180000629.01.T01:cds;Parent=MsG0180000629.01.T01
Chr1 CDS 8860290 8860498 8860290 ID=MsG0180000629.01.T01:cds;Parent=MsG0180000629.01.T01
Chr1 CDS 8860795 8860869 8860795 ID=MsG0180000629.01.T01:cds;Parent=MsG0180000629.01.T01
Chr1 three_prime_UTR 8860870 8861187 8860870 ID=MsG0180000629.01.T01:three_prime_utr;Parent=MsG0180000629.01.T01
Chr1 three_prime_UTR 8861261 8861786 8861261 ID=MsG0180000629.01.T01:three_prime_utr;Parent=MsG0180000629.01.T01
Gene Sequence

>MsG0180000629.01.T01

ATGGTTTTTTTTTGTGGGTTTCTGGAAATTTTTCTAAGAAAGAAGATTGATGCAGATGAGGAAAGAATTGATGCAGATGGAAAGAAGAAGGAGAAGGGAATGCATTGTTCAAAGCTGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTTCTGGAGCTATTGATACTCAACATCTTTGTGGCATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGCTCTATATCTCAGGCAACAACATTTGGCATGAAAAGCGTTGTGTACATGCCGCGGATCAAATTGGATACGGTTGCAGCATTGTCTGCATTCTGCGAGAAGGGCCAGCATGATTCTAGCCAATATGTTTCTCTCTTTCTGGAAATCAGGGCTTATGACAAAGCAGCTCTAAAATGCAAGGGAAGAGAGGCAGTGACTGACTTTGATCTGAATTTGGGCATGGAGACTCCAGTACATGAACCTAAAGAAAACAAAGGATATCATCAATTTCACTGTTTCTTTTTTTCTTCTTACAACCTGCATCCTCGAAGGAGTTTAAAGGTTTCATCCATGGGCTCTTCACAGGAAGTGGAGATCAAAGCCTCACAAGAGAGACTCAAGGAATTTCAAACCTGA
Protein sequence

>MsG0180000629.01.T01

MVFFCGFLEIFLRKKIDADEERIDADGKKKEKGMHCSKLVVINGAAKEVGRAAVLAVTKARGMEVSGAIDTQHLCGMEEPLEIPILNDLTMVLGSISQATTFGMKSVVYMPRIKLDTVAALSAFCEKGQHDSSQYVSLFLEIRAYDKAALKCKGREAVTDFDLNLGMETPVHEPKENKGYHQFHCFFFSSYNLHPRRSLKVSSMGSSQEVEIKASQERLKEFQT*