AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000663.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000663.01.T01 MTR_1g047740 53.767 292 52 7 1 218 1 283 2.60e-91 270
MsG0180000663.01.T01 MTR_3g108240 49.492 295 68 5 1 218 1 291 2.60e-87 260
MsG0180000663.01.T01 MTR_3g108240 49.492 295 66 5 1 218 1 289 9.32e-87 259
MsG0180000663.01.T01 MTR_7g102990 45.622 217 48 3 72 218 35 251 1.09e-57 184
MsG0180000663.01.T01 MTR_1g010150 54.011 187 16 3 102 218 1 187 2.25e-54 173
MsG0180000663.01.T01 MTR_4g057310 42.396 217 55 4 72 218 29 245 8.93e-52 169
MsG0180000663.01.T01 MTR_7g102990 65.556 90 27 1 72 157 35 124 2.76e-37 129
MsG0180000663.01.T01 MTR_4g057310 65.556 90 27 1 72 157 32 121 6.33e-37 129
MsG0180000663.01.T01 MTR_2g020040 35.780 218 69 5 71 218 28 244 9.10e-37 129
MsG0180000663.01.T01 MTR_1g010170 97.674 43 1 0 1 43 1 43 1.13e-24 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000663.01.T01 AT5G25560 41.695 295 90 7 1 218 1 290 4.22e-62 196
MsG0180000663.01.T01 AT5G25560 41.695 295 90 7 1 218 1 290 4.22e-62 196
MsG0180000663.01.T01 AT5G25560 41.695 295 90 7 1 218 1 290 4.22e-62 196
MsG0180000663.01.T01 AT5G25560 41.695 295 90 7 1 218 1 290 4.22e-62 196
MsG0180000663.01.T01 AT5G25560 41.356 295 86 7 1 218 1 285 3.03e-61 194
MsG0180000663.01.T01 AT5G25560 40.656 305 89 8 1 218 1 300 2.81e-59 189
MsG0180000663.01.T01 AT5G22920 39.450 218 62 3 71 218 37 254 2.12e-47 158
MsG0180000663.01.T01 AT5G18650 38.991 218 62 5 71 218 28 244 1.12e-39 137
MsG0180000663.01.T01 AT5G22920 54.310 116 45 3 71 181 37 149 3.40e-36 127
MsG0180000663.01.T01 AT3G62970 37.615 218 64 5 71 218 45 260 4.40e-35 126
MsG0180000663.01.T01 AT3G62970 56.044 91 35 2 71 157 45 134 2.72e-27 104
MsG0180000663.01.T01 AT3G62970 56.044 91 35 2 71 157 45 134 4.34e-27 103
MsG0180000663.01.T01 AT1G74770 26.852 216 79 5 72 217 1036 1242 2.54e-17 80.5
MsG0180000663.01.T01 AT1G18910 26.172 256 103 6 32 217 998 1237 1.28e-15 75.5

Find 197 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATAACTTGTACTTTAT+AGG 0.169060 1:-9409475 None:intergenic
TCTGTCAGTTTCAGCTTCTT+TGG 0.193748 1:+9408904 MsG0180000663.01.T01:five_prime_UTR
GTCAAAGGTTTGGGAGAAAT+TGG 0.205837 1:+9417031 MsG0180000663.01.T01:CDS
AGCTCCAACAACTTCAAAAT+TGG 0.213420 1:-9410242 None:intergenic
ATTATATCAGTTTAGGTTAT+AGG 0.222174 1:+9409922 MsG0180000663.01.T01:five_prime_UTR
TTGAACATTCGCACTACTTC+AGG 0.257889 1:-9410489 None:intergenic
AAGGATTCCGGATTTGATTT+TGG 0.261066 1:-9411276 None:intergenic
GTATTTACTCTTTCTTGATT+TGG 0.261296 1:+9408821 MsG0180000663.01.T01:five_prime_UTR
TGTCTTGTTGTGTTCCTCTC+TGG 0.262298 1:+9410932 MsG0180000663.01.T01:five_prime_UTR
GTCTTGTTGTGTTCCTCTCT+GGG 0.277961 1:+9410933 MsG0180000663.01.T01:five_prime_UTR
CTTCATATCATGTTATGTTT+AGG 0.283914 1:+9409133 MsG0180000663.01.T01:five_prime_UTR
TCGTTTGGTGGATTCGGGTT+AGG 0.283988 1:+9417798 MsG0180000663.01.T01:three_prime_UTR
ATTAATGATTATATCAGTTT+AGG 0.291138 1:+9409915 MsG0180000663.01.T01:five_prime_UTR
ATTCTGTCGTTTGGTGGATT+CGG 0.310339 1:+9417792 MsG0180000663.01.T01:three_prime_UTR
TTCTGTCGTTTGGTGGATTC+GGG 0.310629 1:+9417793 MsG0180000663.01.T01:three_prime_UTR
GAATGGCTTTGATGCTAGTT+TGG 0.316601 1:+9410342 MsG0180000663.01.T01:five_prime_UTR
AAGAATCCTTATGTCATAGA+AGG 0.324300 1:-9410455 None:intergenic
TCTTCTCCAGGCAAGGATTC+CGG 0.334834 1:-9411288 None:intergenic
TATCAACTAGATCTAGAAAT+AGG 0.336249 1:-9411141 None:intergenic
TAACACGATTCATTGCTATA+AGG 0.336294 1:+9409264 MsG0180000663.01.T01:five_prime_UTR
TTACCATGGTGCAGACTATA+TGG 0.342233 1:+9410586 MsG0180000663.01.T01:five_prime_UTR
ACCGGAGAAGATGCCGAATC+AGG 0.343514 1:+9411456 MsG0180000663.01.T01:CDS
TTGGTGTTTACCTGGCTTGA+TGG 0.343622 1:+9411041 MsG0180000663.01.T01:five_prime_UTR
AGGTCAATCATCTATGTAAC+TGG 0.344820 1:-9409835 None:intergenic
ATTAAGTTTCTCACCCCATA+TGG 0.346434 1:-9409425 None:intergenic
ACAAATAAAATGAGATGAAA+TGG 0.346674 1:-9417626 None:intergenic
TATGTATTGGTTCAACGAAA+TGG 0.348744 1:+9417597 MsG0180000663.01.T01:three_prime_UTR
AACAGGTATTCTTATTTACT+TGG 0.348767 1:+9414869 MsG0180000663.01.T01:CDS
TGAATAGTCTCACAAGTGTT+TGG 0.349126 1:+9409561 MsG0180000663.01.T01:five_prime_UTR
CTTAAGTAAGCTAGTTCAAC+TGG 0.349344 1:+9409589 MsG0180000663.01.T01:five_prime_UTR
ATCAAGTACATATGATTTGC+AGG 0.350981 1:+9411311 MsG0180000663.01.T01:CDS
CGTTTGGTGGATTCGGGTTA+GGG 0.351612 1:+9417799 MsG0180000663.01.T01:three_prime_UTR
TGAGTTCAATATGATTCAAC+TGG 0.352442 1:-9409618 None:intergenic
CAAAATTGGCTTCAAACTCT+TGG 0.352568 1:-9410228 None:intergenic
CAGATGGGGAAGGCATTAAA+AGG 0.366366 1:-9410119 None:intergenic
TCAATTAATTATGACCCATA+TGG 0.368369 1:+9409410 MsG0180000663.01.T01:five_prime_UTR
AGTGATAATATATATGCTTT+TGG 0.368641 1:+9410609 MsG0180000663.01.T01:five_prime_UTR
CAGCATAAGCATTCTACAAC+TGG 0.369478 1:-9409986 None:intergenic
AGTTTCAGCTTCTTTGGATT+CGG 0.375123 1:+9408910 MsG0180000663.01.T01:five_prime_UTR
CTCTTGTTGTCGTGTGTTGT+AGG 0.379657 1:-9417554 None:intergenic
AAATAGGTTGAAGTTTCTAT+TGG 0.380135 1:+9410767 MsG0180000663.01.T01:intron
AGCTGCTGTATTCTGTCGTT+TGG 0.386957 1:+9417783 MsG0180000663.01.T01:three_prime_UTR
TTGGTTTGGTCCACTATAGT+TGG 0.388909 1:+9410786 MsG0180000663.01.T01:five_prime_UTR
TTTGCAGGAGAAGGGATATA+TGG 0.390895 1:+9411326 MsG0180000663.01.T01:CDS
CTCTCTGGGGTGGTGGTGAT+CGG 0.394788 1:+9410947 MsG0180000663.01.T01:five_prime_UTR
CTGTGATATGTCAAAGGTTT+GGG 0.397365 1:+9417022 MsG0180000663.01.T01:CDS
TTGTGATAGGTAATGTAGTT+TGG 0.400164 1:+9408938 MsG0180000663.01.T01:five_prime_UTR
AAAATCTGAAACAAAATTGC+TGG 0.400253 1:-9410057 None:intergenic
TTACATAGATGATTGACCTT+AGG 0.400353 1:+9409839 MsG0180000663.01.T01:five_prime_UTR
TGAGCCATATCAAAACAAAA+TGG 0.400566 1:+9417082 MsG0180000663.01.T01:CDS
TACTTGATGCTGTTCTCTCT+TGG 0.403847 1:+9417663 MsG0180000663.01.T01:three_prime_UTR
TTTCGAATCTCCAATCTTCA+AGG 0.404332 1:-9408709 None:intergenic
TTGCTTCCTGCAGTTGGAGA+TGG 0.406758 1:-9410083 None:intergenic
CAATTAATTATGACCCATAT+GGG 0.410514 1:+9409411 MsG0180000663.01.T01:five_prime_UTR
GGTTGAAGTTTCTATTGGTT+TGG 0.412128 1:+9410772 MsG0180000663.01.T01:intron
TGGTGTTTACCTGGCTTGAT+GGG 0.412625 1:+9411042 MsG0180000663.01.T01:five_prime_UTR
GAATAGTCTCACAAGTGTTT+GGG 0.414273 1:+9409562 MsG0180000663.01.T01:five_prime_UTR
GGATTCGGTTCTGTTGTGAT+AGG 0.414403 1:+9408925 MsG0180000663.01.T01:five_prime_UTR
TTGCAACAGGGGCCCTGATT+CGG 0.416703 1:-9411469 None:intergenic
ACATGACACTAATTATGTAT+TGG 0.417742 1:+9417584 MsG0180000663.01.T01:three_prime_UTR
CTGTCTTATTTCGTCAAGCT+TGG 0.420981 1:+9410204 MsG0180000663.01.T01:five_prime_UTR
TTATGTTTAGGAGGCGTTTG+AGG 0.421766 1:+9409145 MsG0180000663.01.T01:five_prime_UTR
TTTGTGTTGCTGATTACAAT+TGG 0.422430 1:+9410986 MsG0180000663.01.T01:five_prime_UTR
ATGTCTTCGTATCACAATTA+CGG 0.423546 1:-9409668 None:intergenic
TATGTTTAGGAGGCGTTTGA+GGG 0.423996 1:+9409146 MsG0180000663.01.T01:five_prime_UTR
AGAAATAGGCAGTAAGCTTA+AGG 0.424237 1:-9411127 None:intergenic
TACATAGATGATTGACCTTA+GGG 0.430824 1:+9409840 MsG0180000663.01.T01:five_prime_UTR
ACAAAATTGCTGGTGCTGTT+TGG 0.432289 1:-9410047 None:intergenic
CCCTGATTCGGCATCTTCTC+CGG 0.435085 1:-9411457 None:intergenic
TATGTACTTGATTCTTCTCC+AGG 0.439979 1:-9411300 None:intergenic
CTAGTTGATAATCTTATTTG+AGG 0.443439 1:+9411154 MsG0180000663.01.T01:five_prime_UTR
TGGAGGATAAACGCCTTCTT+CGG 0.450394 1:-9411256 None:intergenic
AACACGATTCATTGCTATAA+GGG 0.451627 1:+9409265 MsG0180000663.01.T01:five_prime_UTR
AACCACTAGAGGCCTGTGAT+AGG 0.452024 1:-9409776 None:intergenic
GCCTCGACACCAAGTCAAAC+AGG 0.452342 1:+9414852 MsG0180000663.01.T01:CDS
TTTGTTCTGGGAGTTCTTCA+AGG 0.456293 1:+9410811 MsG0180000663.01.T01:five_prime_UTR
GTTGAATCATATTGAACTCA+TGG 0.458110 1:+9409621 MsG0180000663.01.T01:five_prime_UTR
ATAAGGGTATCAAGAGGTCT+TGG 0.460888 1:+9409281 MsG0180000663.01.T01:five_prime_UTR
CGTTAATTGTGGTGTTTGCA+TGG 0.461112 1:+9415453 MsG0180000663.01.T01:CDS
GAGGTCTTGGTTTGGAGGCA+AGG 0.463730 1:+9409294 MsG0180000663.01.T01:five_prime_UTR
CACTGCTACATTGTAATATG+TGG 0.465738 1:+9410891 MsG0180000663.01.T01:five_prime_UTR
AGAACAAAATCCAACTATAG+TGG 0.466920 1:-9410796 None:intergenic
TAGAGGCCTGTGATAGGAAC+AGG 0.468934 1:-9409770 None:intergenic
CAAATGGAAACGGACATTAG+AGG 0.469044 1:-9417504 None:intergenic
GAAGTTGTTGGAGCTTCGTA+TGG 0.470627 1:+9410250 MsG0180000663.01.T01:five_prime_UTR
TGTGTTCCTCTCTGGGGTGG+TGG 0.472954 1:+9410940 MsG0180000663.01.T01:five_prime_UTR
TCAAATCCGGAATCCTTGCC+TGG 0.473220 1:+9411282 MsG0180000663.01.T01:CDS
CATATCATGTTATGTTTAGG+AGG 0.473581 1:+9409136 MsG0180000663.01.T01:five_prime_UTR
CTAAATTTGTTCGTACATGC+AGG 0.474635 1:+9411103 MsG0180000663.01.T01:five_prime_UTR
CTACAAGGATGCTGTACACT+TGG 0.475732 1:+9417686 MsG0180000663.01.T01:three_prime_UTR
TCTGTGATATGTCAAAGGTT+TGG 0.478142 1:+9417021 MsG0180000663.01.T01:CDS
TTTGAGGATAGCTTGTATCA+TGG 0.478756 1:+9411170 MsG0180000663.01.T01:exon
TGAACATTCGCACTACTTCA+GGG 0.482367 1:-9410488 None:intergenic
GACAACCGCTTATCATGGTA+AGG 0.483673 1:-9409453 None:intergenic
ACAATGCGTTGGTGTTTACC+TGG 0.484706 1:+9411033 MsG0180000663.01.T01:five_prime_UTR
TATAGGACAACCGCTTATCA+TGG 0.486082 1:-9409458 None:intergenic
TGCTGTATTCTGTCGTTTGG+TGG 0.491181 1:+9417786 MsG0180000663.01.T01:three_prime_UTR
TGTCATAGAAGGTTTGCAGC+AGG 0.491209 1:-9410444 None:intergenic
GCTGTTCTCTCTTGGCTACA+AGG 0.492755 1:+9417671 MsG0180000663.01.T01:three_prime_UTR
GGTATCAAGAGGTCTTGGTT+TGG 0.492904 1:+9409286 MsG0180000663.01.T01:five_prime_UTR
TTGAGGATAGCTTGTATCAT+GGG 0.493617 1:+9411171 MsG0180000663.01.T01:exon
GTAATGGCTGTGGAATTTGC+AGG 0.495528 1:+9415692 MsG0180000663.01.T01:CDS
TGCAAACCTTCTATGACATA+AGG 0.498123 1:+9410449 MsG0180000663.01.T01:five_prime_UTR
TTATCCTCCAAAATCAAATC+CGG 0.499360 1:+9411269 MsG0180000663.01.T01:CDS
CAACACAAAATCATATTATG+AGG 0.502615 1:-9410972 None:intergenic
CCTGGTCCTGTTCCTATCAC+AGG 0.503379 1:+9409764 MsG0180000663.01.T01:five_prime_UTR
AAAGAGTAAATACGAACAAA+CGG 0.503441 1:-9408811 None:intergenic
TACATATGATTTGCAGGAGA+AGG 0.503985 1:+9411317 MsG0180000663.01.T01:CDS
AAATTGAAATAATTTCACTT+TGG 0.513568 1:+9409367 MsG0180000663.01.T01:five_prime_UTR
TTAAGTTTCTCACCCCATAT+GGG 0.516164 1:-9409424 None:intergenic
TTTGATCCATCTCCAACTGC+AGG 0.517421 1:+9410077 MsG0180000663.01.T01:five_prime_UTR
TTTGCAGATGCCAACACTAC+CGG 0.517868 1:+9411438 MsG0180000663.01.T01:CDS
TTTAGTTGGGGAGTAAGAGT+TGG 0.518981 1:+9417757 MsG0180000663.01.T01:three_prime_UTR
AAGAAACATATGACCGAAGA+AGG 0.522486 1:+9411243 MsG0180000663.01.T01:CDS
CAGCAAAATTGCGTTAATTG+TGG 0.522657 1:+9415442 MsG0180000663.01.T01:CDS
ATCAAGAGGTCTTGGTTTGG+AGG 0.523579 1:+9409289 MsG0180000663.01.T01:five_prime_UTR
TAGGTAGAGAAGTCTTTCAC+AGG 0.526998 1:+9409941 MsG0180000663.01.T01:five_prime_UTR
GTTGGAGCTTCGTATGGGTG+TGG 0.527279 1:+9410256 MsG0180000663.01.T01:five_prime_UTR
GTCATAGAAGGTTTGCAGCA+GGG 0.527633 1:-9410443 None:intergenic
GGCATCTTCTCCGGTAGTGT+TGG 0.528892 1:-9411448 None:intergenic
ACATGAATCAGTGTCGTGTC+TGG 0.529814 1:-9409197 None:intergenic
TTTATTTGTTATGAAGGCAG+TGG 0.530197 1:+9417640 MsG0180000663.01.T01:three_prime_UTR
ACAGGTATTCTTATTTACTT+GGG 0.530578 1:+9414870 MsG0180000663.01.T01:CDS
TTCCTATCACAGGCCTCTAG+TGG 0.536414 1:+9409774 MsG0180000663.01.T01:five_prime_UTR
CCGGAGAAGATGCCGAATCA+GGG 0.537715 1:+9411457 MsG0180000663.01.T01:CDS
AAGCAGCAGTACCATTGTAA+TGG 0.540337 1:+9415676 MsG0180000663.01.T01:CDS
TTTAGTCACCCCATCAAGCC+AGG 0.541385 1:-9411051 None:intergenic
CAGTACCATTGTAATGGCTG+TGG 0.543474 1:+9415682 MsG0180000663.01.T01:CDS
ACATATTACAATGTAGCAGT+GGG 0.544691 1:-9410889 None:intergenic
ACTTGATTCTTCTCCAGGCA+AGG 0.546025 1:-9411295 None:intergenic
TTGGAGCTTCGTATGGGTGT+GGG 0.546844 1:+9410257 MsG0180000663.01.T01:five_prime_UTR
TGCACCATGGTAAAATCACT+TGG 0.547517 1:-9410576 None:intergenic
TTCAACGCGCTTAGACACAT+TGG 0.548093 1:+9417712 MsG0180000663.01.T01:three_prime_UTR
GATTTCTTGCATACTGCCGC+AGG 0.555095 1:-9411009 None:intergenic
TTTATTTGTCGGACAGCAAG+AGG 0.555509 1:+9410320 MsG0180000663.01.T01:five_prime_UTR
TTGTCTTTAGTAGTGATCCA+TGG 0.558388 1:+9409321 MsG0180000663.01.T01:five_prime_UTR
CTACAACACACGACAACAAG+AGG 0.563124 1:+9417555 MsG0180000663.01.T01:three_prime_UTR
TCAATTAATATATTTCCCTA+AGG 0.565128 1:-9409855 None:intergenic
ACCTGTTTGACTTGGTGTCG+AGG 0.565593 1:-9414853 None:intergenic
TGGATCCTGTGCAATGATTG+TGG 0.566578 1:+9417476 MsG0180000663.01.T01:CDS
GCAGGTATGAATTGATAACC+TGG 0.567730 1:+9415710 MsG0180000663.01.T01:CDS
TTGTCGGACAGCAAGAGGAA+TGG 0.570006 1:+9410325 MsG0180000663.01.T01:five_prime_UTR
ACATATGATTTGCAGGAGAA+GGG 0.570282 1:+9411318 MsG0180000663.01.T01:CDS
TGTTGTGTTCCTCTCTGGGG+TGG 0.572094 1:+9410937 MsG0180000663.01.T01:five_prime_UTR
CACATATTACAATGTAGCAG+TGG 0.575076 1:-9410890 None:intergenic
GAGAAGGGATATATGGAACA+TGG 0.576071 1:+9411333 MsG0180000663.01.T01:CDS
GTTAATTGTGGTGTTTGCAT+GGG 0.576398 1:+9415454 MsG0180000663.01.T01:CDS
GTCGGTCTGTGATATGTCAA+AGG 0.586948 1:+9417016 MsG0180000663.01.T01:CDS
TGCAACTGCAGAAATACAGA+TGG 0.592512 1:-9410135 None:intergenic
GCAAGAAATCAACAATGCGT+TGG 0.593575 1:+9411022 MsG0180000663.01.T01:five_prime_UTR
TGGTAAGTTTCGGTATCTGG+AGG 0.596663 1:+9410629 MsG0180000663.01.T01:five_prime_UTR
ATAAGAATACCTGTTTGACT+TGG 0.598715 1:-9414861 None:intergenic
GCAACTGCAGAAATACAGAT+GGG 0.599931 1:-9410134 None:intergenic
ATGCCCTCTCTGTTCAAAGT+CGG 0.600364 1:+9416998 MsG0180000663.01.T01:CDS
CTTTCACAGGGCATCCGAAG+TGG 0.601324 1:+9409954 MsG0180000663.01.T01:five_prime_UTR
GATAGCTTGTATCATGGGCG+AGG 0.602796 1:+9411176 MsG0180000663.01.T01:exon
TTTACAACACAAACCACTAG+AGG 0.603969 1:-9409787 None:intergenic
TCACCGACACTTCTAATCAA+AGG 0.606748 1:-9409237 None:intergenic
GTCGTGTCTGGTGTATGTGT+CGG 0.607368 1:-9409185 None:intergenic
AGCTTGTATCATGGGCGAGG+TGG 0.609164 1:+9411179 MsG0180000663.01.T01:exon
GCGGTGACTGTGTGACATCA+AGG 0.609481 1:-9409697 None:intergenic
TCTTGTTGTGTTCCTCTCTG+GGG 0.614695 1:+9410934 MsG0180000663.01.T01:five_prime_UTR
AAGTTGTTGGAGCTTCGTAT+GGG 0.616841 1:+9410251 MsG0180000663.01.T01:five_prime_UTR
TAAGCCCTTACCATGATAAG+CGG 0.617684 1:+9409448 MsG0180000663.01.T01:five_prime_UTR
TCATTGCATTCAAATTGCAG+AGG 0.622420 1:-9411219 None:intergenic
CCTGTGATAGGAACAGGACC+AGG 0.624566 1:-9409764 None:intergenic
TAATTGTATTTACTGCCCGA+AGG 0.627254 1:+9410855 MsG0180000663.01.T01:five_prime_UTR
TTGCCGCCATTGTCACAATG+AGG 0.627282 1:+9411504 MsG0180000663.01.T01:CDS
GGTTTGGGAGAAATTGGACA+TGG 0.628537 1:+9417037 MsG0180000663.01.T01:CDS
TTGCCTCATTGTGACAATGG+CGG 0.629473 1:-9411507 None:intergenic
AGACCGACTTTGAACAGAGA+GGG 0.629552 1:-9417001 None:intergenic
TTCGCACTACTTCAGGGACT+AGG 0.630927 1:-9410482 None:intergenic
ACACCTTTGATTAGAAGTGT+CGG 0.631331 1:+9409234 MsG0180000663.01.T01:five_prime_UTR
ATGACTCAAAATTCTAGACC+TGG 0.635167 1:+9409746 MsG0180000663.01.T01:five_prime_UTR
TGCAGAAATACAGATGGGGA+AGG 0.637630 1:-9410129 None:intergenic
GAGTTCAATATGATTCAACT+GGG 0.637908 1:-9409617 None:intergenic
AGCATAAGCATTCTACAACT+GGG 0.638970 1:-9409985 None:intergenic
AGAAGGGATATATGGAACAT+GGG 0.639294 1:+9411334 MsG0180000663.01.T01:CDS
GGTGTTTACCTGGCTTGATG+GGG 0.642075 1:+9411043 MsG0180000663.01.T01:five_prime_UTR
GAGTTCTTCAAGGAATCAAG+TGG 0.652411 1:+9410821 MsG0180000663.01.T01:five_prime_UTR
ACAACCGCTTATCATGGTAA+GGG 0.656781 1:-9409452 None:intergenic
TGTTGTAGGAATTGCAGTTG+AGG 0.661197 1:-9417540 None:intergenic
ACTGGGTAGTAGTTCCACTT+CGG 0.669491 1:-9409968 None:intergenic
AATTAATTATGACCCATATG+GGG 0.669812 1:+9409412 MsG0180000663.01.T01:five_prime_UTR
ATGGGGAAGGCATTAAAAGG+AGG 0.671654 1:-9410116 None:intergenic
AGGTAGAGAAGTCTTTCACA+GGG 0.675471 1:+9409942 MsG0180000663.01.T01:five_prime_UTR
TGCTGATTACAATTGGCCTG+CGG 0.677934 1:+9410993 MsG0180000663.01.T01:five_prime_UTR
CAAGCTAATCAATGACACCA+TGG 0.688555 1:-9409338 None:intergenic
ATTGCTATAAGGGTATCAAG+AGG 0.689948 1:+9409275 MsG0180000663.01.T01:five_prime_UTR
CGATCACCACCACCCCAGAG+AGG 0.698030 1:-9410946 None:intergenic
AAATTCCACAGCCATTACAA+TGG 0.701862 1:-9415687 None:intergenic
GAACTTTCAACTCTTCACGA+CGG 0.711527 1:-9408761 None:intergenic
CAACTGCAGAAATACAGATG+GGG 0.716883 1:-9410133 None:intergenic
CATATTACAATGTAGCAGTG+GGG 0.718614 1:-9410888 None:intergenic
ACTCCATATAGTCTGCACCA+TGG 0.733549 1:-9410589 None:intergenic
CAGACCGACTTTGAACAGAG+AGG 0.734899 1:-9417002 None:intergenic
CTTGACGAAATAAGACAGCG+TGG 0.740760 1:-9410199 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATAGAATTTATTTATTA+AGG + Chr1:9415072-9415091 MsG0180000663.01.T01:intron 10.0%
!! TATATAAATATGAAATAAGA+TGG - Chr1:9411612-9411631 None:intergenic 10.0%
!! TTTATATTTATTTAGATGAA+AGG - Chr1:9411855-9411874 None:intergenic 10.0%
!!! ACATGTAAATTTTATAATAA+AGG - Chr1:9416067-9416086 None:intergenic 10.0%
!!! AGTTGTAAATATTTTAATTA+GGG + Chr1:9416702-9416721 MsG0180000663.01.T01:intron 10.0%
!!! CATGTAAATTTTATAATAAA+GGG - Chr1:9416066-9416085 None:intergenic 10.0%
!!! TATTAACTTGTAAATTTTTA+TGG - Chr1:9412407-9412426 None:intergenic 10.0%
!! AAATTGAAATAATTTCACTT+TGG + Chr1:9409367-9409386 MsG0180000663.01.T01:five_prime_UTR 15.0%
!! AGTGAAAATTTAATTGTAAT+TGG + Chr1:9414592-9414611 MsG0180000663.01.T01:intron 15.0%
!! ATAAAATTTACATGTCATAT+TGG + Chr1:9416072-9416091 MsG0180000663.01.T01:intron 15.0%
!! ATATAAGACATAAATCTTAA+AGG + Chr1:9413089-9413108 MsG0180000663.01.T01:intron 15.0%
!! ATTAATGATTATATCAGTTT+AGG + Chr1:9409915-9409934 MsG0180000663.01.T01:five_prime_UTR 15.0%
!! TAAAAAAATTTGATGTATAC+AGG + Chr1:9414967-9414986 MsG0180000663.01.T01:intron 15.0%
!! TAAGATTTATGTCTTATATA+AGG - Chr1:9413088-9413107 None:intergenic 15.0%
!! TAATTAGGGTTAATTTAAAT+TGG + Chr1:9416716-9416735 MsG0180000663.01.T01:intron 15.0%
!! TATAAGACATAAATCTTAAA+GGG + Chr1:9413090-9413109 MsG0180000663.01.T01:intron 15.0%
!!! AAAAAAAATAACAGCTTTTA+AGG + Chr1:9414274-9414293 MsG0180000663.01.T01:intron 15.0%
!!! GAGTTGTAAATATTTTAATT+AGG + Chr1:9416701-9416720 MsG0180000663.01.T01:intron 15.0%
!!! GTATAATAGTTTAAGATATT+CGG - Chr1:9412259-9412278 None:intergenic 15.0%
!!! TTAATTTTTGGCAAATTAAA+AGG + Chr1:9417235-9417254 MsG0180000663.01.T01:intron 15.0%
!!! TTTATTTTATTATCCACAAA+GGG - Chr1:9410689-9410708 None:intergenic 15.0%
!! AAAAATAAGTCTGCTTATAA+AGG + Chr1:9412927-9412946 MsG0180000663.01.T01:intron 20.0%
!! ACAAATAAAATGAGATGAAA+TGG - Chr1:9417629-9417648 None:intergenic 20.0%
!! ACTGATATAATAACTATTAC+AGG - Chr1:9416674-9416693 None:intergenic 20.0%
!! ATAAGACATAAATCTTAAAG+GGG + Chr1:9413091-9413110 MsG0180000663.01.T01:intron 20.0%
!! ATATTTATTTAGATGAAAGG+AGG - Chr1:9411852-9411871 None:intergenic 20.0%
!! ATTTGTGAATGTTCAAATTA+AGG - Chr1:9414900-9414919 None:intergenic 20.0%
!! CATGCATAAAGAAAATAATA+TGG + Chr1:9415190-9415209 MsG0180000663.01.T01:intron 20.0%
!! CTGATTAACTTCAATTATTT+CGG + Chr1:9412474-9412493 MsG0180000663.01.T01:intron 20.0%
!! CTTGTTCAAAGTTTATTAAT+TGG - Chr1:9416622-9416641 None:intergenic 20.0%
!! GAGATTATTCACAATTTATT+TGG - Chr1:9412182-9412201 None:intergenic 20.0%
!! TAATTGAAGTTAATCAGAAA+AGG - Chr1:9412471-9412490 None:intergenic 20.0%
!! TATTTATTTAGATGAAAGGA+GGG - Chr1:9411851-9411870 None:intergenic 20.0%
!! TCAATTAATATATTTCCCTA+AGG - Chr1:9409858-9409877 None:intergenic 20.0%
!! TGATTTATTGCTTTCAAAAT+AGG + Chr1:9410751-9410770 MsG0180000663.01.T01:intron 20.0%
!! TTGTGTTAAATTACAAGAAA+AGG + Chr1:9412042-9412061 MsG0180000663.01.T01:intron 20.0%
!!! AACTTTTCAAATCTCTTTTT+TGG - Chr1:9414007-9414026 None:intergenic 20.0%
!!! AAGAATTAGTTCTAATTAGT+AGG - Chr1:9412118-9412137 None:intergenic 20.0%
!!! AAGTCTAATTTTATGGAAAA+AGG - Chr1:9411416-9411435 None:intergenic 20.0%
!!! AGAAATAACTTGTACTTTAT+AGG - Chr1:9409478-9409497 None:intergenic 20.0%
!!! AGTGATAATATATATGCTTT+TGG + Chr1:9410609-9410628 MsG0180000663.01.T01:five_prime_UTR 20.0%
!!! ATATAACTTGTAGAAGTTTT+AGG + Chr1:9411073-9411092 MsG0180000663.01.T01:five_prime_UTR 20.0%
!!! ATCCATTTGTTTTTATTTGT+CGG + Chr1:9410309-9410328 MsG0180000663.01.T01:five_prime_UTR 20.0%
!!! ATTATATCAGTTTAGGTTAT+AGG + Chr1:9409922-9409941 MsG0180000663.01.T01:five_prime_UTR 20.0%
!!! GCAAATAAAGTCTAATTTTA+TGG - Chr1:9411423-9411442 None:intergenic 20.0%
!!! GTTTATTTTATTATCCACAA+AGG - Chr1:9410690-9410709 None:intergenic 20.0%
!!! TAGTTTTCTTGTTCTTTTAT+TGG + Chr1:9414419-9414438 MsG0180000663.01.T01:intron 20.0%
!!! TCTCATTTTATTTGTTATGA+AGG + Chr1:9417634-9417653 MsG0180000663.01.T01:three_prime_UTR 20.0%
!!! TGATTTTACTACTTAATTTC+AGG + Chr1:9415417-9415436 MsG0180000663.01.T01:intron 20.0%
!!! TTTTCAGTCTACTTTATTAT+AGG + Chr1:9415816-9415835 MsG0180000663.01.T01:intron 20.0%
!!! TTTTTTATTAGCATTACAGA+GGG - Chr1:9414954-9414973 None:intergenic 20.0%
!!! TTTTTTTATTAGCATTACAG+AGG - Chr1:9414955-9414974 None:intergenic 20.0%
! AAAATTGTACAAGAACCATA+TGG - Chr1:9416206-9416225 None:intergenic 25.0%
! AAAGAGTAAATACGAACAAA+CGG - Chr1:9408814-9408833 None:intergenic 25.0%
! AACAAATTGCATCATTATGA+GGG + Chr1:9415751-9415770 MsG0180000663.01.T01:intron 25.0%
! AATTAATTATGACCCATATG+GGG + Chr1:9409412-9409431 MsG0180000663.01.T01:five_prime_UTR 25.0%
! ACAAAGTACATAAAGATATG+CGG + Chr1:9412976-9412995 MsG0180000663.01.T01:intron 25.0%
! ACATGACACTAATTATGTAT+TGG + Chr1:9417584-9417603 MsG0180000663.01.T01:three_prime_UTR 25.0%
! ACATGTTAAAGATTCCAAAA+GGG - Chr1:9415963-9415982 None:intergenic 25.0%
! AGATATCTGCATCATTTAAA+AGG - Chr1:9415656-9415675 None:intergenic 25.0%
! AGATGTAAGCACATAATATA+TGG + Chr1:9412011-9412030 MsG0180000663.01.T01:intron 25.0%
! CAACACAAAATCATATTATG+AGG - Chr1:9410975-9410994 None:intergenic 25.0%
! CAACATATATGATTATAGCT+AGG - Chr1:9412366-9412385 None:intergenic 25.0%
! CAATTAATTATGACCCATAT+GGG + Chr1:9409411-9409430 MsG0180000663.01.T01:five_prime_UTR 25.0%
! CTTCATATCATGTTATGTTT+AGG + Chr1:9409133-9409152 MsG0180000663.01.T01:five_prime_UTR 25.0%
! GTATCAACTACAATGATATA+TGG + Chr1:9415343-9415362 MsG0180000663.01.T01:intron 25.0%
! GTATTTACTCTTTCTTGATT+TGG + Chr1:9408821-9408840 MsG0180000663.01.T01:five_prime_UTR 25.0%
! TAACAAATTGCATCATTATG+AGG + Chr1:9415750-9415769 MsG0180000663.01.T01:intron 25.0%
! TAAGACATAAATCTTAAAGG+GGG + Chr1:9413092-9413111 MsG0180000663.01.T01:intron 25.0%
! TAATTAGTAGGTGAATTAGT+AGG - Chr1:9412106-9412125 None:intergenic 25.0%
! TATCAACTAGATCTAGAAAT+AGG - Chr1:9411144-9411163 None:intergenic 25.0%
! TCAATTAATTATGACCCATA+TGG + Chr1:9409410-9409429 MsG0180000663.01.T01:five_prime_UTR 25.0%
! TCCAATGAAAGATAATTGTA+TGG - Chr1:9412627-9412646 None:intergenic 25.0%
! TCCATACAATTATCTTTCAT+TGG + Chr1:9412623-9412642 MsG0180000663.01.T01:intron 25.0%
! TGAAAATCGGAAAAAAACAA+AGG - Chr1:9414649-9414668 None:intergenic 25.0%
! TGAGTATCATAAAATGAAGT+TGG + Chr1:9411773-9411792 MsG0180000663.01.T01:intron 25.0%
! TGGAAATTAGTTCATGAATT+TGG + Chr1:9412643-9412662 MsG0180000663.01.T01:intron 25.0%
!! AAAAGGGAGAAATTTTGTAT+TGG - Chr1:9415947-9415966 None:intergenic 25.0%
!! AAAATCTGAAACAAAATTGC+TGG - Chr1:9410060-9410079 None:intergenic 25.0%
!! AAATAGGTTGAAGTTTCTAT+TGG + Chr1:9410767-9410786 MsG0180000663.01.T01:intron 25.0%
!! AACAGGTATTCTTATTTACT+TGG + Chr1:9414869-9414888 MsG0180000663.01.T01:CDS 25.0%
!! AATACAAAATTTCTCCCTTT+TGG + Chr1:9415946-9415965 MsG0180000663.01.T01:intron 25.0%
!! ACAGGTATTCTTATTTACTT+GGG + Chr1:9414870-9414889 MsG0180000663.01.T01:CDS 25.0%
!! AGATATGAGTCTGTAATTTT+TGG + Chr1:9410012-9410031 MsG0180000663.01.T01:five_prime_UTR 25.0%
!! ATGAGAGAGCAAATTTTTAT+GGG + Chr1:9409879-9409898 MsG0180000663.01.T01:five_prime_UTR 25.0%
!! GAAAAAGGAATTTTATTCCT+AGG - Chr1:9415532-9415551 None:intergenic 25.0%
!! TAATTGGTTTCTATTTGTCT+TGG + Chr1:9414608-9414627 MsG0180000663.01.T01:intron 25.0%
!! TATATGCTTTTGGTAAGTTT+CGG + Chr1:9410619-9410638 MsG0180000663.01.T01:five_prime_UTR 25.0%
!! TATGAGAGAGCAAATTTTTA+TGG + Chr1:9409878-9409897 MsG0180000663.01.T01:five_prime_UTR 25.0%
!! TCCAATGAAAGATGATTTTA+GGG - Chr1:9412792-9412811 None:intergenic 25.0%
!! TGATTGTTGCTTAAATGATA+TGG + Chr1:9411584-9411603 MsG0180000663.01.T01:intron 25.0%
!! TTCCAATGAAAGATGATTTT+AGG - Chr1:9412793-9412812 None:intergenic 25.0%
!! TTGGCAGTATTCTTAATTTT+GGG + Chr1:9414759-9414778 MsG0180000663.01.T01:intron 25.0%
!! TTTGGCAGTATTCTTAATTT+TGG + Chr1:9414758-9414777 MsG0180000663.01.T01:intron 25.0%
!!! AAAATAACAGCTTTTAAGGA+AGG + Chr1:9414278-9414297 MsG0180000663.01.T01:intron 25.0%
!!! CTAGTTGATAATCTTATTTG+AGG + Chr1:9411154-9411173 MsG0180000663.01.T01:five_prime_UTR 25.0%
!!! CTTGTTTTTAATTGTGTATC+AGG + Chr1:9416970-9416989 MsG0180000663.01.T01:intron 25.0%
!!! CTTTTTTGGTCTTTCAAAAA+TGG - Chr1:9413993-9414012 None:intergenic 25.0%
!!! TACTTTACTTTTTATTGCCT+TGG + Chr1:9416286-9416305 MsG0180000663.01.T01:intron 25.0%
!!! TGTTCAGTTTGATTTTAGTT+GGG + Chr1:9417744-9417763 MsG0180000663.01.T01:three_prime_UTR 25.0%
!!! TTAGCTTTATCCTGATTTTA+GGG + Chr1:9416154-9416173 MsG0180000663.01.T01:intron 25.0%
!!! TTGTTCAGTTTGATTTTAGT+TGG + Chr1:9417743-9417762 MsG0180000663.01.T01:three_prime_UTR 25.0%
!!! TTTAGATTAGAAGCTGTTTT+TGG + Chr1:9408989-9409008 MsG0180000663.01.T01:five_prime_UTR 25.0%
AAAAAGCAGGAAGCAAAAAT+CGG - Chr1:9410405-9410424 None:intergenic 30.0%
AAACAAAAACCTCAACAAAC+AGG - Chr1:9409083-9409102 None:intergenic 30.0%
AAATGAAATGCAATGCCATA+TGG + Chr1:9416188-9416207 MsG0180000663.01.T01:intron 30.0%
AAATTAACCAAGTGAATGCA+TGG + Chr1:9411976-9411995 MsG0180000663.01.T01:intron 30.0%
AAATTAGTCATCCCAAATTG+TGG + Chr1:9413390-9413409 MsG0180000663.01.T01:intron 30.0%
AACACGATTCATTGCTATAA+GGG + Chr1:9409265-9409284 MsG0180000663.01.T01:five_prime_UTR 30.0%
AAGAACTAAGCAAAAAACAC+AGG - Chr1:9416422-9416441 None:intergenic 30.0%
AAGAATCCTTATGTCATAGA+AGG - Chr1:9410458-9410477 None:intergenic 30.0%
AAGCACATAATATATGGCAT+AGG + Chr1:9412017-9412036 MsG0180000663.01.T01:intron 30.0%
AATACTGCATTCATCAATGT+TGG - Chr1:9416800-9416819 None:intergenic 30.0%
AATCCTTATATGCAACCTTA+GGG + Chr1:9416025-9416044 MsG0180000663.01.T01:intron 30.0%
AATGTTACCTCAAAACAAAC+AGG - Chr1:9416578-9416597 None:intergenic 30.0%
AATTGTATGGATAGATTGCA+AGG - Chr1:9412614-9412633 None:intergenic 30.0%
ACATATTACAATGTAGCAGT+GGG - Chr1:9410892-9410911 None:intergenic 30.0%
ACCACAACATCAAAAGAAAA+AGG - Chr1:9415547-9415566 None:intergenic 30.0%
ACTGAAACAACAAAACAACA+AGG + Chr1:9413012-9413031 MsG0180000663.01.T01:intron 30.0%
ACTTACCACACTTATTACAA+TGG - Chr1:9416384-9416403 None:intergenic 30.0%
ACTTCAATTATTTCGGTCTT+CGG + Chr1:9412481-9412500 MsG0180000663.01.T01:intron 30.0%
AGAACAAAATCCAACTATAG+TGG - Chr1:9410799-9410818 None:intergenic 30.0%
AGATGAAGAAAAAGTAGACT+TGG - Chr1:9416928-9416947 None:intergenic 30.0%
ATAAGAATACCTGTTTGACT+TGG - Chr1:9414864-9414883 None:intergenic 30.0%
ATCAAAAATCTCATTGCAAC+AGG - Chr1:9411485-9411504 None:intergenic 30.0%
ATGAGAATGAATTTGATCGA+TGG + Chr1:9413249-9413268 MsG0180000663.01.T01:intron 30.0%
ATGTCTTCGTATCACAATTA+CGG - Chr1:9409671-9409690 None:intergenic 30.0%
ATGTTACCTCAAAACAAACA+GGG - Chr1:9416577-9416596 None:intergenic 30.0%
ATTAAGGTCGATGTAACTAT+CGG + Chr1:9415088-9415107 MsG0180000663.01.T01:intron 30.0%
CAACACTAACAACTACTATT+AGG + Chr1:9414566-9414585 MsG0180000663.01.T01:intron 30.0%
CAATTCATGTGAGAATGAAA+CGG + Chr1:9412295-9412314 MsG0180000663.01.T01:intron 30.0%
CACATAAAACCAATGAATGA+TGG - Chr1:9411660-9411679 None:intergenic 30.0%
CACATGTTAAAGATTCCAAA+AGG - Chr1:9415964-9415983 None:intergenic 30.0%
CACCAAAATAGTTTCTCATT+TGG + Chr1:9416107-9416126 MsG0180000663.01.T01:intron 30.0%
CAGAATATGTTGTCAAATAG+CGG - Chr1:9414483-9414502 None:intergenic 30.0%
CATATCATGTTATGTTTAGG+AGG + Chr1:9409136-9409155 MsG0180000663.01.T01:five_prime_UTR 30.0%
GAAATTTGATTGCACATGTT+TGG + Chr1:9412691-9412710 MsG0180000663.01.T01:intron 30.0%
GAGTTCAATATGATTCAACT+GGG - Chr1:9409620-9409639 None:intergenic 30.0%
GATCACTTCATGATGAAAAT+CGG - Chr1:9414662-9414681 None:intergenic 30.0%
GCCAAAAATTAAGAAACCAA+CGG - Chr1:9417227-9417246 None:intergenic 30.0%
GCTCTTAAGGAAAATATACA+CGG + Chr1:9414166-9414185 MsG0180000663.01.T01:intron 30.0%
GGTAACATTTACAACTTTCA+TGG + Chr1:9416589-9416608 MsG0180000663.01.T01:intron 30.0%
GTCCGACAAATAAAAACAAA+TGG - Chr1:9410314-9410333 None:intergenic 30.0%
GTTGAATCATATTGAACTCA+TGG + Chr1:9409621-9409640 MsG0180000663.01.T01:five_prime_UTR 30.0%
TAACACGATTCATTGCTATA+AGG + Chr1:9409264-9409283 MsG0180000663.01.T01:five_prime_UTR 30.0%
TAATCATTACGAAATGACAG+TGG + Chr1:9412888-9412907 MsG0180000663.01.T01:intron 30.0%
TACATAGATGATTGACCTTA+GGG + Chr1:9409840-9409859 MsG0180000663.01.T01:five_prime_UTR 30.0%
TAGACTTGCGGTTTATTTAT+TGG + Chr1:9417405-9417424 MsG0180000663.01.T01:intron 30.0%
TAGTACTTATTTGACATCCA+TGG + Chr1:9416468-9416487 MsG0180000663.01.T01:intron 30.0%
TAGTTCTTTAAGTAGCAATG+CGG + Chr1:9416434-9416453 MsG0180000663.01.T01:intron 30.0%
TATTTGTCTTGGCATTGTTA+AGG + Chr1:9414619-9414638 MsG0180000663.01.T01:intron 30.0%
TCAAAAATCTCATTGCAACA+GGG - Chr1:9411484-9411503 None:intergenic 30.0%
TCCCTAAAATCATCTTTCAT+TGG + Chr1:9412788-9412807 MsG0180000663.01.T01:intron 30.0%
TGAGCCATATCAAAACAAAA+TGG + Chr1:9417082-9417101 MsG0180000663.01.T01:CDS 30.0%
TGAGTTCAATATGATTCAAC+TGG - Chr1:9409621-9409640 None:intergenic 30.0%
TTACATAGATGATTGACCTT+AGG + Chr1:9409839-9409858 MsG0180000663.01.T01:five_prime_UTR 30.0%
TTATCCTCCAAAATCAAATC+CGG + Chr1:9411269-9411288 MsG0180000663.01.T01:CDS 30.0%
TTATTGGCATCTTAAATCCA+AGG + Chr1:9417421-9417440 MsG0180000663.01.T01:intron 30.0%
TTCTTCCATTGTAATAAGTG+TGG + Chr1:9416376-9416395 MsG0180000663.01.T01:intron 30.0%
TTGTGATAGGTAATGTAGTT+TGG + Chr1:9408938-9408957 MsG0180000663.01.T01:five_prime_UTR 30.0%
TTGTTAAGCTTATTACTGTC+AGG + Chr1:9415218-9415237 MsG0180000663.01.T01:intron 30.0%
! AAATTTTTATGGGAGACTCA+AGG + Chr1:9409889-9409908 MsG0180000663.01.T01:five_prime_UTR 30.0%
! AACATGACATCATGTTTTCA+TGG - Chr1:9413055-9413074 None:intergenic 30.0%
! AAGGTATACACCATTTGTTA+AGG + Chr1:9414297-9414316 MsG0180000663.01.T01:intron 30.0%
! AATTTTTATGGGAGACTCAA+GGG + Chr1:9409890-9409909 MsG0180000663.01.T01:five_prime_UTR 30.0%
! ACTATAGTTGGATTTTGTTC+TGG + Chr1:9410798-9410817 MsG0180000663.01.T01:five_prime_UTR 30.0%
! ATCAAGTACATATGATTTGC+AGG + Chr1:9411311-9411330 MsG0180000663.01.T01:CDS 30.0%
! CTATAGTTGGATTTTGTTCT+GGG + Chr1:9410799-9410818 MsG0180000663.01.T01:five_prime_UTR 30.0%
! GTCCAAATGAGAAACTATTT+TGG - Chr1:9416112-9416131 None:intergenic 30.0%
! GTCTTATATAAGGCACATTT+TGG - Chr1:9413078-9413097 None:intergenic 30.0%
! TATACACCATTTGTTAAGGT+CGG + Chr1:9414301-9414320 MsG0180000663.01.T01:intron 30.0%
! TCACTTTCACTTTAGAAGTA+TGG + Chr1:9414702-9414721 MsG0180000663.01.T01:intron 30.0%
! TCCTTTTTCTTTTGATGTTG+TGG + Chr1:9415543-9415562 MsG0180000663.01.T01:intron 30.0%
! TGGCAGTATTCTTAATTTTG+GGG + Chr1:9414760-9414779 MsG0180000663.01.T01:intron 30.0%
! TTGTTAGTGTTGTTAAGTAG+CGG - Chr1:9414558-9414577 None:intergenic 30.0%
! TTTCATTCAGACAGCTTTTA+TGG - Chr1:9416871-9416890 None:intergenic 30.0%
! TTTGTGTTGCTGATTACAAT+TGG + Chr1:9410986-9411005 MsG0180000663.01.T01:five_prime_UTR 30.0%
!! ATGAGTCTGTAATTTTTGGA+GGG + Chr1:9410016-9410035 MsG0180000663.01.T01:five_prime_UTR 30.0%
!! CAAATGAGAAACTATTTTGG+TGG - Chr1:9416109-9416128 None:intergenic 30.0%
!! CAAGAGGGGTATTTATTATT+TGG + Chr1:9414066-9414085 MsG0180000663.01.T01:intron 30.0%
!! CAATTTGGGATGACTAATTT+TGG - Chr1:9413390-9413409 None:intergenic 30.0%
!! GATTTTAGGGATAAATTGCA+AGG - Chr1:9412779-9412798 None:intergenic 30.0%
!! GTTATATTTTTGCACAGAAC+TGG + Chr1:9416340-9416359 MsG0180000663.01.T01:intron 30.0%
!! TATGAGTCTGTAATTTTTGG+AGG + Chr1:9410015-9410034 MsG0180000663.01.T01:five_prime_UTR 30.0%
!! TATGTATTGGTTCAACGAAA+TGG + Chr1:9417597-9417616 MsG0180000663.01.T01:three_prime_UTR 30.0%
!! TGAAATTTTCCTGTTTGTTG+AGG + Chr1:9409071-9409090 MsG0180000663.01.T01:five_prime_UTR 30.0%
!! TTTATTTGTTATGAAGGCAG+TGG + Chr1:9417640-9417659 MsG0180000663.01.T01:three_prime_UTR 30.0%
!!! AACTCTGCTTTTAAAATTGC+TGG + Chr1:9416756-9416775 MsG0180000663.01.T01:intron 30.0%
!!! ATTTTGTTTTGATATGGCTC+AGG - Chr1:9417083-9417102 None:intergenic 30.0%
!!! CATCATTCATTGGTTTTATG+TGG + Chr1:9411658-9411677 MsG0180000663.01.T01:intron 30.0%
!!! CTGACCATTTTGTTTTGATA+TGG - Chr1:9417089-9417108 None:intergenic 30.0%
!!! CTTAGCTTTATCCTGATTTT+AGG + Chr1:9416153-9416172 MsG0180000663.01.T01:intron 30.0%
!!! GTTCAGTTTGATTTTAGTTG+GGG + Chr1:9417745-9417764 MsG0180000663.01.T01:three_prime_UTR 30.0%
!!! TCCGTTGGTTTCTTAATTTT+TGG + Chr1:9417223-9417242 MsG0180000663.01.T01:intron 30.0%
!!! TGACATCCATGGTTTTTTTT+TGG + Chr1:9416479-9416498 MsG0180000663.01.T01:intron 30.0%
AAATTCCACAGCCATTACAA+TGG - Chr1:9415690-9415709 None:intergenic 35.0%
AAATTTGGATGCCCTTGATA+GGG + Chr1:9413534-9413553 MsG0180000663.01.T01:intron 35.0%
AAGAAACATATGACCGAAGA+AGG + Chr1:9411243-9411262 MsG0180000663.01.T01:CDS 35.0%
AAGTATTCACTTTCACCTTG+TGG - Chr1:9412546-9412565 None:intergenic 35.0%
AAGTTAGCACTACGGAAATT+TGG + Chr1:9413519-9413538 MsG0180000663.01.T01:intron 35.0%
AATCTTTAACATGTGCCCTT+AGG + Chr1:9415969-9415988 MsG0180000663.01.T01:intron 35.0%
AATTGCATCATTATGAGGGA+TGG + Chr1:9415755-9415774 MsG0180000663.01.T01:intron 35.0%
ACTGTGAAAACAAACTTGTG+TGG + Chr1:9414029-9414048 MsG0180000663.01.T01:intron 35.0%
AGAAATAGGCAGTAAGCTTA+AGG - Chr1:9411130-9411149 None:intergenic 35.0%
AGAAGGGATATATGGAACAT+GGG + Chr1:9411334-9411353 MsG0180000663.01.T01:CDS 35.0%
AGCATAAGATCTATTGCTCT+AGG - Chr1:9415280-9415299 None:intergenic 35.0%
AGCATAAGCATTCTACAACT+GGG - Chr1:9409988-9410007 None:intergenic 35.0%
AGCTCCAACAACTTCAAAAT+TGG - Chr1:9410245-9410264 None:intergenic 35.0%
AGGTCAATCATCTATGTAAC+TGG - Chr1:9409838-9409857 None:intergenic 35.0%
AGTGTAAACAACCATCAGAT+AGG - Chr1:9417125-9417144 None:intergenic 35.0%
AGTTGTTAACAAATGCCCTT+AGG - Chr1:9415859-9415878 None:intergenic 35.0%
AGTTTCAGCTTCTTTGGATT+CGG + Chr1:9408910-9408929 MsG0180000663.01.T01:five_prime_UTR 35.0%
ATCTTTAACATGTGCCCTTA+GGG + Chr1:9415970-9415989 MsG0180000663.01.T01:intron 35.0%
ATGACTCAAAATTCTAGACC+TGG + Chr1:9409746-9409765 MsG0180000663.01.T01:five_prime_UTR 35.0%
ATTAAGTTTCTCACCCCATA+TGG - Chr1:9409428-9409447 None:intergenic 35.0%
ATTCTGCTAAATAGCACATG+TGG + Chr1:9414497-9414516 MsG0180000663.01.T01:intron 35.0%
CAAAAATCTCATTGCAACAG+GGG - Chr1:9411483-9411502 None:intergenic 35.0%
CAATTGTCACCATCATTCAT+TGG + Chr1:9411648-9411667 MsG0180000663.01.T01:intron 35.0%
CACATATTACAATGTAGCAG+TGG - Chr1:9410893-9410912 None:intergenic 35.0%
CACTGCTACATTGTAATATG+TGG + Chr1:9410891-9410910 MsG0180000663.01.T01:five_prime_UTR 35.0%
CAGAATTCTTGCAAAAACTG+CGG - Chr1:9409719-9409738 None:intergenic 35.0%
CAGCAAAATTGCGTTAATTG+TGG + Chr1:9415442-9415461 MsG0180000663.01.T01:CDS 35.0%
CAGGAAATTCTCTACTTATC+AGG - Chr1:9413694-9413713 None:intergenic 35.0%
CATATTACAATGTAGCAGTG+GGG - Chr1:9410891-9410910 None:intergenic 35.0%
CCTATGCCAAAAAAAAACCA+TGG - Chr1:9416488-9416507 None:intergenic 35.0%
CGTTTCATTCTCACATGAAT+TGG - Chr1:9412297-9412316 None:intergenic 35.0%
CTGTGATATGTCAAAGGTTT+GGG + Chr1:9417022-9417041 MsG0180000663.01.T01:CDS 35.0%
CTTAAGTAAGCTAGTTCAAC+TGG + Chr1:9409589-9409608 MsG0180000663.01.T01:five_prime_UTR 35.0%
CTTCAAAAAACAGGAAGCAA+AGG - Chr1:9413631-9413650 None:intergenic 35.0%
GAATAGTCTCACAAGTGTTT+GGG + Chr1:9409562-9409581 MsG0180000663.01.T01:five_prime_UTR 35.0%
GAATCCTTATATGCAACCTT+AGG + Chr1:9416024-9416043 MsG0180000663.01.T01:intron 35.0%
GATAACACTATTAGTGTCCT+TGG - Chr1:9417441-9417460 None:intergenic 35.0%
GGTATTCTCTTTGACTATTG+TGG - Chr1:9412525-9412544 None:intergenic 35.0%
GTAGGATCACGAGATAATAA+TGG + Chr1:9413220-9413239 MsG0180000663.01.T01:intron 35.0%
GTGTAAACAACCATCAGATA+GGG - Chr1:9417124-9417143 None:intergenic 35.0%
GTTAATTGTGGTGTTTGCAT+GGG + Chr1:9415454-9415473 MsG0180000663.01.T01:CDS 35.0%
GTTGTTAACAAATGCCCTTA+GGG - Chr1:9415858-9415877 None:intergenic 35.0%
TAATTGTATTTACTGCCCGA+AGG + Chr1:9410855-9410874 MsG0180000663.01.T01:five_prime_UTR 35.0%
TAGTCAAAGAGAATACCACA+AGG + Chr1:9412528-9412547 MsG0180000663.01.T01:intron 35.0%
TAGTGTTATCCTTTACATGC+AGG + Chr1:9417451-9417470 MsG0180000663.01.T01:intron 35.0%
TAGTTCAAGACTCGTATACA+TGG - Chr1:9412079-9412098 None:intergenic 35.0%
TATAATACGTGTTTGTGCCA+AGG + Chr1:9417287-9417306 MsG0180000663.01.T01:intron 35.0%
TATGTACTTGATTCTTCTCC+AGG - Chr1:9411303-9411322 None:intergenic 35.0%
TCATTGCATTCAAATTGCAG+AGG - Chr1:9411222-9411241 None:intergenic 35.0%
TCCAAAAGATCCCTAAAATC+AGG - Chr1:9416167-9416186 None:intergenic 35.0%
TCCACAAAAGTCAAACACTT+CGG - Chr1:9413338-9413357 None:intergenic 35.0%
TCCTTGTATAGCACATTCAA+CGG - Chr1:9414099-9414118 None:intergenic 35.0%
TCTGTGATATGTCAAAGGTT+TGG + Chr1:9417021-9417040 MsG0180000663.01.T01:CDS 35.0%
TGAATAGTCTCACAAGTGTT+TGG + Chr1:9409561-9409580 MsG0180000663.01.T01:five_prime_UTR 35.0%
TGCAAACCTTCTATGACATA+AGG + Chr1:9410449-9410468 MsG0180000663.01.T01:five_prime_UTR 35.0%
TTAAGCTTATTACTGTCAGG+AGG + Chr1:9415221-9415240 MsG0180000663.01.T01:intron 35.0%
TTAAGTTTCTCACCCCATAT+GGG - Chr1:9409427-9409446 None:intergenic 35.0%
TTATCCTTTACATGCAGGTT+TGG + Chr1:9417456-9417475 MsG0180000663.01.T01:intron 35.0%
TTATTATCTCGTGATCCTAC+TGG - Chr1:9413220-9413239 None:intergenic 35.0%
TTCCAATGTAGAGAAAAAGC+AGG - Chr1:9410418-9410437 None:intergenic 35.0%
TTGTCTTTAGTAGTGATCCA+TGG + Chr1:9409321-9409340 MsG0180000663.01.T01:five_prime_UTR 35.0%
TTTACAACACAAACCACTAG+AGG - Chr1:9409790-9409809 None:intergenic 35.0%
TTTCGAATCTCCAATCTTCA+AGG - Chr1:9408712-9408731 None:intergenic 35.0%
! AAGTGCTTTTCCTTGAAGAT+TGG + Chr1:9408699-9408718 MsG0180000663.01.T01:five_prime_UTR 35.0%
! ACACCTTTGATTAGAAGTGT+CGG + Chr1:9409234-9409253 MsG0180000663.01.T01:five_prime_UTR 35.0%
! ACATATGATTTGCAGGAGAA+GGG + Chr1:9411318-9411337 MsG0180000663.01.T01:CDS 35.0%
! ATGAATGATGGTGACAATTG+AGG - Chr1:9411648-9411667 None:intergenic 35.0%
! CAAAATTGGCTTCAAACTCT+TGG - Chr1:9410231-9410250 None:intergenic 35.0%
! CTAAATTTGTTCGTACATGC+AGG + Chr1:9411103-9411122 MsG0180000663.01.T01:five_prime_UTR 35.0%
! GAAATTTGCTTGCACATGTT+TGG + Chr1:9412856-9412875 MsG0180000663.01.T01:intron 35.0%
! GGTTGAAGTTTCTATTGGTT+TGG + Chr1:9410772-9410791 MsG0180000663.01.T01:intron 35.0%
! TACATATGATTTGCAGGAGA+AGG + Chr1:9411317-9411336 MsG0180000663.01.T01:CDS 35.0%
! TTGAGGATAGCTTGTATCAT+GGG + Chr1:9411171-9411190 MsG0180000663.01.T01:exon 35.0%
! TTTGAGGATAGCTTGTATCA+TGG + Chr1:9411170-9411189 MsG0180000663.01.T01:exon 35.0%
! TTTTGCGCTACAAATGGAAA+CGG - Chr1:9417517-9417536 None:intergenic 35.0%
! TTTTGGTAAGTTTCGGTATC+TGG + Chr1:9410626-9410645 MsG0180000663.01.T01:five_prime_UTR 35.0%
! TTTTTCCACAATCATTGCAC+AGG - Chr1:9417484-9417503 None:intergenic 35.0%
!! AAGGATTCCGGATTTGATTT+TGG - Chr1:9411279-9411298 None:intergenic 35.0%
!! ATATTTTTGCACAGAACTGG+CGG + Chr1:9416343-9416362 MsG0180000663.01.T01:intron 35.0%
!! ATGATGTGAGTATTGATCCT+AGG + Chr1:9415512-9415531 MsG0180000663.01.T01:intron 35.0%
!! ATTGCTATAAGGGTATCAAG+AGG + Chr1:9409275-9409294 MsG0180000663.01.T01:five_prime_UTR 35.0%
!! GTGTTTGACTTTTGTGGAAT+TGG + Chr1:9413340-9413359 MsG0180000663.01.T01:intron 35.0%
!! GTTTCATGATTTGCTCAAGA+GGG + Chr1:9414051-9414070 MsG0180000663.01.T01:intron 35.0%
!! TCCTGATTTTAGGGATCTTT+TGG + Chr1:9416163-9416182 MsG0180000663.01.T01:intron 35.0%
!! TTTCATGATTTGCTCAAGAG+GGG + Chr1:9414052-9414071 MsG0180000663.01.T01:intron 35.0%
!!! AGAAACTATTTTGGTGGATG+TGG - Chr1:9416103-9416122 None:intergenic 35.0%
!!! CAAGGAAAAGCACTTTTCTA+CGG - Chr1:9408694-9408713 None:intergenic 35.0%
!!! CCATGGTTTTTTTTTGGCAT+AGG + Chr1:9416485-9416504 MsG0180000663.01.T01:intron 35.0%
!!! CTCATGGTTTTGAATTGTTG+TGG + Chr1:9409637-9409656 MsG0180000663.01.T01:five_prime_UTR 35.0%
!!! GAAGCCAATTTTGAAGTTGT+TGG + Chr1:9410238-9410257 MsG0180000663.01.T01:five_prime_UTR 35.0%
!!! TTCCTGCTTTTTCTCTACAT+TGG + Chr1:9410413-9410432 MsG0180000663.01.T01:five_prime_UTR 35.0%
!!! TTTTTTTTGCTTCCTGCAGT+TGG - Chr1:9410092-9410111 None:intergenic 35.0%
AAAATCAGAGAAGGAGCCAA+AGG - Chr1:9413894-9413913 None:intergenic 40.0%
AAACAACCATCAGATAGGGT+GGG - Chr1:9417120-9417139 None:intergenic 40.0%
AAACCTCAAGCGCAAAATGA+TGG - Chr1:9413936-9413955 None:intergenic 40.0%
AAATCAGAGAAGGAGCCAAA+GGG - Chr1:9413893-9413912 None:intergenic 40.0%
AACCTCTGAATCAGATGTTG+AGG - Chr1:9413861-9413880 None:intergenic 40.0%
AAGCAGCAGTACCATTGTAA+TGG + Chr1:9415676-9415695 MsG0180000663.01.T01:CDS 40.0%
AAGTTGTTGGAGCTTCGTAT+GGG + Chr1:9410251-9410270 MsG0180000663.01.T01:five_prime_UTR 40.0%
AATTGCAGTTACAGACTCAC+TGG - Chr1:9415610-9415629 None:intergenic 40.0%
AATTTCCATCGGAAATGCTG+GGG - Chr1:9413963-9413982 None:intergenic 40.0%
ACAACCGCTTATCATGGTAA+GGG - Chr1:9409455-9409474 None:intergenic 40.0%
ACCGTTGAATGTGCTATACA+AGG + Chr1:9414095-9414114 MsG0180000663.01.T01:intron 40.0%
AGAATTTCCATCGGAAATGC+TGG - Chr1:9413965-9413984 None:intergenic 40.0%
AGCTAATCAAACTCCTCGAT+TGG - Chr1:9413296-9413315 None:intergenic 40.0%
AGGTAGAGAAGTCTTTCACA+GGG + Chr1:9409942-9409961 MsG0180000663.01.T01:five_prime_UTR 40.0%
ATCCTCAACATCTGATTCAG+AGG + Chr1:9413856-9413875 MsG0180000663.01.T01:intron 40.0%
ATGGCAACATGTTTCAACAG+GGG + Chr1:9415774-9415793 MsG0180000663.01.T01:intron 40.0%
ATGGCTGAGAGAATTTCCAT+CGG - Chr1:9413974-9413993 None:intergenic 40.0%
ATGTTCCAGACTACAAAACC+AGG - Chr1:9415731-9415750 None:intergenic 40.0%
ATTGAGCACAGAACAGGAAA+AGG - Chr1:9414930-9414949 None:intergenic 40.0%
CAAATGGAAACGGACATTAG+AGG - Chr1:9417507-9417526 None:intergenic 40.0%
CAACTGCAGAAATACAGATG+GGG - Chr1:9410136-9410155 None:intergenic 40.0%
CAAGCTAATCAATGACACCA+TGG - Chr1:9409341-9409360 None:intergenic 40.0%
CAGCATAAGCATTCTACAAC+TGG - Chr1:9409989-9410008 None:intergenic 40.0%
CAGGTGATATGTTCACTTTG+TGG + Chr1:9414986-9415005 MsG0180000663.01.T01:intron 40.0%
CCACAAAAGTCAAACACTTC+GGG - Chr1:9413337-9413356 None:intergenic 40.0%
CGTTAATTGTGGTGTTTGCA+TGG + Chr1:9415453-9415472 MsG0180000663.01.T01:CDS 40.0%
GAAATTTGGATGCCCTTGAT+AGG + Chr1:9413533-9413552 MsG0180000663.01.T01:intron 40.0%
GAACTTTCAACTCTTCACGA+CGG - Chr1:9408764-9408783 None:intergenic 40.0%
GAATTTCCATCGGAAATGCT+GGG - Chr1:9413964-9413983 None:intergenic 40.0%
GACCAAATTCATATGCGTAC+AGG - Chr1:9417205-9417224 None:intergenic 40.0%
GAGAAGGGATATATGGAACA+TGG + Chr1:9411333-9411352 MsG0180000663.01.T01:CDS 40.0%
GAGGTATATATGGTGATCGA+TGG + Chr1:9417329-9417348 MsG0180000663.01.T01:intron 40.0%
GAGTTCTTCAAGGAATCAAG+TGG + Chr1:9410821-9410840 MsG0180000663.01.T01:five_prime_UTR 40.0%
GATGGCAACATGTTTCAACA+GGG + Chr1:9415773-9415792 MsG0180000663.01.T01:intron 40.0%
GCAACTGCAGAAATACAGAT+GGG - Chr1:9410137-9410156 None:intergenic 40.0%
GCAAGAAATCAACAATGCGT+TGG + Chr1:9411022-9411041 MsG0180000663.01.T01:five_prime_UTR 40.0%
GTCAAAGGTTTGGGAGAAAT+TGG + Chr1:9417031-9417050 MsG0180000663.01.T01:CDS 40.0%
GTGACAATTGAGGAAAGGAT+TGG - Chr1:9411638-9411657 None:intergenic 40.0%
GTTGTCAAATAGCGGCTATA+GGG - Chr1:9414475-9414494 None:intergenic 40.0%
GTTTGACCGACCTTAACAAA+TGG - Chr1:9414310-9414329 None:intergenic 40.0%
TAAACAACCATCAGATAGGG+TGG - Chr1:9417121-9417140 None:intergenic 40.0%
TAAGCCCTTACCATGATAAG+CGG + Chr1:9409448-9409467 MsG0180000663.01.T01:five_prime_UTR 40.0%
TACTTGATGCTGTTCTCTCT+TGG + Chr1:9417663-9417682 MsG0180000663.01.T01:three_prime_UTR 40.0%
TAGCACCAATAAGACATCCT+TGG - Chr1:9417307-9417326 None:intergenic 40.0%
TAGGTAGAGAAGTCTTTCAC+AGG + Chr1:9409941-9409960 MsG0180000663.01.T01:five_prime_UTR 40.0%
TATAGGACAACCGCTTATCA+TGG - Chr1:9409461-9409480 None:intergenic 40.0%
TATGGTGATCGATGGAATAG+TGG + Chr1:9417337-9417356 MsG0180000663.01.T01:intron 40.0%
TCAACATCTGATTCAGAGGT+TGG + Chr1:9413860-9413879 MsG0180000663.01.T01:intron 40.0%
TCACCGACACTTCTAATCAA+AGG - Chr1:9409240-9409259 None:intergenic 40.0%
TCAGGATAAAGCTAAGTGCT+AGG - Chr1:9416149-9416168 None:intergenic 40.0%
TCTGTCAGTTTCAGCTTCTT+TGG + Chr1:9408904-9408923 MsG0180000663.01.T01:five_prime_UTR 40.0%
TGAACAATACCTTGCCTTCT+TGG - Chr1:9413476-9413495 None:intergenic 40.0%
TGAACATTCGCACTACTTCA+GGG - Chr1:9410491-9410510 None:intergenic 40.0%
TGAATTATGCCTTCTCCAGT+AGG + Chr1:9413202-9413221 MsG0180000663.01.T01:intron 40.0%
TGCAACTGCAGAAATACAGA+TGG - Chr1:9410138-9410157 None:intergenic 40.0%
TGCACCATGGTAAAATCACT+TGG - Chr1:9410579-9410598 None:intergenic 40.0%
TGCCTGTACGCATATGAATT+TGG + Chr1:9417200-9417219 MsG0180000663.01.T01:intron 40.0%
TGTTGTAGGAATTGCAGTTG+AGG - Chr1:9417543-9417562 None:intergenic 40.0%
TGTTGTCAAATAGCGGCTAT+AGG - Chr1:9414476-9414495 None:intergenic 40.0%
TTACACTACGCGTATGCTTA+CGG + Chr1:9417138-9417157 MsG0180000663.01.T01:intron 40.0%
TTACCATGGTGCAGACTATA+TGG + Chr1:9410586-9410605 MsG0180000663.01.T01:five_prime_UTR 40.0%
TTCTCTACTTATCAGGCTCT+TGG - Chr1:9413687-9413706 None:intergenic 40.0%
TTGAACATTCGCACTACTTC+AGG - Chr1:9410492-9410511 None:intergenic 40.0%
TTGCTGGAATCTGATTCATG+TGG + Chr1:9416772-9416791 MsG0180000663.01.T01:intron 40.0%
TTGTCAAATAGCGGCTATAG+GGG - Chr1:9414474-9414493 None:intergenic 40.0%
TTGTGCCAAGGATGTCTTAT+TGG + Chr1:9417299-9417318 MsG0180000663.01.T01:intron 40.0%
TTTAGTTGGGGAGTAAGAGT+TGG + Chr1:9417757-9417776 MsG0180000663.01.T01:three_prime_UTR 40.0%
TTTATTTGTCGGACAGCAAG+AGG + Chr1:9410320-9410339 MsG0180000663.01.T01:five_prime_UTR 40.0%
TTTGCAGGAGAAGGGATATA+TGG + Chr1:9411326-9411345 MsG0180000663.01.T01:CDS 40.0%
! AAAGTCAAACACTTCGGGTT+CGG - Chr1:9413332-9413351 None:intergenic 40.0%
! AATCTAGAAGCGTGCTCTTA+AGG + Chr1:9414153-9414172 MsG0180000663.01.T01:intron 40.0%
! AGGCATTTTTGCGCTACAAA+TGG - Chr1:9417523-9417542 None:intergenic 40.0%
! AGTGTTTTCAATCGCAGAGA+GGG + Chr1:9411708-9411727 MsG0180000663.01.T01:intron 40.0%
! CAACGCTGAACTGCATTTTA+AGG + Chr1:9410655-9410674 MsG0180000663.01.T01:five_prime_UTR 40.0%
! CTTTTGCCTCATTGTGACAA+TGG - Chr1:9411513-9411532 None:intergenic 40.0%
! GCAAGACGCTTTTCTCTTTT+TGG + Chr1:9416002-9416021 MsG0180000663.01.T01:intron 40.0%
! GCAGGTATGAATTGATAACC+TGG + Chr1:9415710-9415729 MsG0180000663.01.T01:CDS 40.0%
! GTGTCCAAGTGATTTTACCA+TGG + Chr1:9410572-9410591 MsG0180000663.01.T01:five_prime_UTR 40.0%
! TACTGGAGAAGGCATAATTC+AGG - Chr1:9413203-9413222 None:intergenic 40.0%
! TGATGGTGACAATTGAGGAA+AGG - Chr1:9411643-9411662 None:intergenic 40.0%
! TGCAGTCTTGCACTTTTGAA+CGG + Chr1:9417887-9417906 MsG0180000663.01.T01:three_prime_UTR 40.0%
! TTATGGATTGTATGTCCGCA+CGG - Chr1:9416854-9416873 None:intergenic 40.0%
! TTTTGATATGGCTCAGGCAT+TGG - Chr1:9417077-9417096 None:intergenic 40.0%
!! AAGGCAAGGTATTGTTCACA+TGG + Chr1:9413478-9413497 MsG0180000663.01.T01:intron 40.0%
!! ACAAAATTGCTGGTGCTGTT+TGG - Chr1:9410050-9410069 None:intergenic 40.0%
!! AGGATGTCTTATTGGTGCTA+TGG + Chr1:9417307-9417326 MsG0180000663.01.T01:intron 40.0%
!! AGGCAAGGTATTGTTCACAT+GGG + Chr1:9413479-9413498 MsG0180000663.01.T01:intron 40.0%
!! ATAAGGGTATCAAGAGGTCT+TGG + Chr1:9409281-9409300 MsG0180000663.01.T01:five_prime_UTR 40.0%
!! ATGTCTTATTGGTGCTATGG+AGG + Chr1:9417310-9417329 MsG0180000663.01.T01:intron 40.0%
!! ATTCAAGTTGAGTTTCTCCG+AGG + Chr1:9413117-9413136 MsG0180000663.01.T01:intron 40.0%
!! ATTCTGTCGTTTGGTGGATT+CGG + Chr1:9417792-9417811 MsG0180000663.01.T01:three_prime_UTR 40.0%
!! CTGTCTTATTTCGTCAAGCT+TGG + Chr1:9410204-9410223 MsG0180000663.01.T01:five_prime_UTR 40.0%
!! GAATGGCTTTGATGCTAGTT+TGG + Chr1:9410342-9410361 MsG0180000663.01.T01:five_prime_UTR 40.0%
!! GATGACTAATTTTGGCGTGT+AGG - Chr1:9413382-9413401 None:intergenic 40.0%
!! GATTCCGGATTTGATTTTGG+AGG - Chr1:9411276-9411295 None:intergenic 40.0%
!! GGTGATTGAGTTGATGATGA+GGG + Chr1:9413163-9413182 MsG0180000663.01.T01:intron 40.0%
!! GGTTTCATGATTTGCTCAAG+AGG + Chr1:9414050-9414069 MsG0180000663.01.T01:intron 40.0%
!! GTGCTAGGCTAGTTTAGTTA+AGG - Chr1:9416134-9416153 None:intergenic 40.0%
!! TATGTTTAGGAGGCGTTTGA+GGG + Chr1:9409146-9409165 MsG0180000663.01.T01:five_prime_UTR 40.0%
!! TGGTGCTATGGAGGTATATA+TGG + Chr1:9417319-9417338 MsG0180000663.01.T01:intron 40.0%
!! TTATGTTTAGGAGGCGTTTG+AGG + Chr1:9409145-9409164 MsG0180000663.01.T01:five_prime_UTR 40.0%
!! TTGAGGATTTGCTGACCTTA+AGG - Chr1:9413844-9413863 None:intergenic 40.0%
!! TTGGTTTGGTCCACTATAGT+TGG + Chr1:9410786-9410805 MsG0180000663.01.T01:five_prime_UTR 40.0%
!! TTTGTTCTGGGAGTTCTTCA+AGG + Chr1:9410811-9410830 MsG0180000663.01.T01:five_prime_UTR 40.0%
!!! GATAACCTGGTTTTGTAGTC+TGG + Chr1:9415723-9415742 MsG0180000663.01.T01:intron 40.0%
!!! GCTGAACTGCATTTTAAGGT+AGG + Chr1:9410659-9410678 MsG0180000663.01.T01:intron 40.0%
!!! TCCTTCTCTGATTTTGACTC+TGG + Chr1:9413899-9413918 MsG0180000663.01.T01:intron 40.0%
!!! TGATTGCCCTGTTTGTTTTG+AGG + Chr1:9416568-9416587 MsG0180000663.01.T01:intron 40.0%
!!! TTTTTTCCCACCCTATCTGA+TGG + Chr1:9417111-9417130 MsG0180000663.01.T01:intron 40.0%
AACCGCAAGTCTATGCTTCT+AGG - Chr1:9417398-9417417 None:intergenic 45.0%
AACGCAAGAATTAGCCGTCA+TGG - Chr1:9414740-9414759 None:intergenic 45.0%
AATACCTTGCCTTCTTGGCT+TGG - Chr1:9413471-9413490 None:intergenic 45.0%
AATTCCTTCACCTCTTGCTC+CGG + Chr1:9413732-9413751 MsG0180000663.01.T01:intron 45.0%
ACATCTGATTCAGAGGTTGG+TGG + Chr1:9413863-9413882 MsG0180000663.01.T01:intron 45.0%
ACATGAATCAGTGTCGTGTC+TGG - Chr1:9409200-9409219 None:intergenic 45.0%
ACGCAAGAATTAGCCGTCAT+GGG - Chr1:9414739-9414758 None:intergenic 45.0%
ACTCCATATAGTCTGCACCA+TGG - Chr1:9410592-9410611 None:intergenic 45.0%
ACTGGGTAGTAGTTCCACTT+CGG - Chr1:9409971-9409990 None:intergenic 45.0%
ACTTCCAAAGCCTTGGAGAA+GGG - Chr1:9413800-9413819 None:intergenic 45.0%
ACTTGATTCTTCTCCAGGCA+AGG - Chr1:9411298-9411317 None:intergenic 45.0%
AGCTGCTGTATTCTGTCGTT+TGG + Chr1:9417783-9417802 MsG0180000663.01.T01:three_prime_UTR 45.0%
ATCAACTCAATCACCCTCAG+AGG - Chr1:9413158-9413177 None:intergenic 45.0%
ATGCCCTCTCTGTTCAAAGT+CGG + Chr1:9416998-9417017 MsG0180000663.01.T01:CDS 45.0%
CAGTACCATTGTAATGGCTG+TGG + Chr1:9415682-9415701 MsG0180000663.01.T01:CDS 45.0%
CGCATATGAATTTGGTCCGT+TGG + Chr1:9417208-9417227 MsG0180000663.01.T01:intron 45.0%
CTACAACACACGACAACAAG+AGG + Chr1:9417555-9417574 MsG0180000663.01.T01:three_prime_UTR 45.0%
CTACAAGGATGCTGTACACT+TGG + Chr1:9417686-9417705 MsG0180000663.01.T01:three_prime_UTR 45.0%
CTATGCTTCTAGGTGCATAC+TGG - Chr1:9417388-9417407 None:intergenic 45.0%
CTCTCTGCGATTGAAAACAC+TGG - Chr1:9411709-9411728 None:intergenic 45.0%
CTGACTTCCATGCATTCACT+TGG - Chr1:9411986-9412005 None:intergenic 45.0%
CTTGACGAAATAAGACAGCG+TGG - Chr1:9410202-9410221 None:intergenic 45.0%
GAAGTTGTTGGAGCTTCGTA+TGG + Chr1:9410250-9410269 MsG0180000663.01.T01:five_prime_UTR 45.0%
GACAACCGCTTATCATGGTA+AGG - Chr1:9409456-9409475 None:intergenic 45.0%
GACTGTGAAAAGGATGAGGA+TGG + Chr1:9413565-9413584 MsG0180000663.01.T01:intron 45.0%
GATGTCATTGTTATGCCGTG+CGG + Chr1:9416836-9416855 MsG0180000663.01.T01:intron 45.0%
GCCAGAGTCAAAATCAGAGA+AGG - Chr1:9413903-9413922 None:intergenic 45.0%
GGAACCAACTCAATCAACCT+CGG - Chr1:9413137-9413156 None:intergenic 45.0%
GGATCCAAACCTGCATGTAA+AGG - Chr1:9417463-9417482 None:intergenic 45.0%
GGATGGCAACATGTTTCAAC+AGG + Chr1:9415772-9415791 MsG0180000663.01.T01:intron 45.0%
GGTATCAAGAGGTCTTGGTT+TGG + Chr1:9409286-9409305 MsG0180000663.01.T01:five_prime_UTR 45.0%
GGTTGTGCAAGTTAGCACTA+CGG + Chr1:9413511-9413530 MsG0180000663.01.T01:intron 45.0%
GGTTTGGGAGAAATTGGACA+TGG + Chr1:9417037-9417056 MsG0180000663.01.T01:CDS 45.0%
GTAATGGCTGTGGAATTTGC+AGG + Chr1:9415692-9415711 MsG0180000663.01.T01:CDS 45.0%
GTAGGACTGTGAAAAGGATG+AGG + Chr1:9413561-9413580 MsG0180000663.01.T01:intron 45.0%
GTCATAGAAGGTTTGCAGCA+GGG - Chr1:9410446-9410465 None:intergenic 45.0%
GTCGGTCTGTGATATGTCAA+AGG + Chr1:9417016-9417035 MsG0180000663.01.T01:CDS 45.0%
GTGCCCTAAGGTTGCATATA+AGG - Chr1:9416031-9416050 None:intergenic 45.0%
TACACTACGCGTATGCTTAC+GGG + Chr1:9417139-9417158 MsG0180000663.01.T01:intron 45.0%
TCTACTTATCAGGCTCTTGG+AGG - Chr1:9413684-9413703 None:intergenic 45.0%
TCTCACAACCACAAAACACC+TGG - Chr1:9415252-9415271 None:intergenic 45.0%
TGACGGCTAATTCTTGCGTT+TGG + Chr1:9414740-9414759 MsG0180000663.01.T01:intron 45.0%
TGCAGAAATACAGATGGGGA+AGG - Chr1:9410132-9410151 None:intergenic 45.0%
TGGAGGATAAACGCCTTCTT+CGG - Chr1:9411259-9411278 None:intergenic 45.0%
TGGATCCTGTGCAATGATTG+TGG + Chr1:9417476-9417495 MsG0180000663.01.T01:CDS 45.0%
TGGCATATGCATGCATGTGT+GGG + Chr1:9411793-9411812 MsG0180000663.01.T01:intron 45.0%
TGGTAAGTTTCGGTATCTGG+AGG + Chr1:9410629-9410648 MsG0180000663.01.T01:five_prime_UTR 45.0%
TGTCATAGAAGGTTTGCAGC+AGG - Chr1:9410447-9410466 None:intergenic 45.0%
TTCAACGCGCTTAGACACAT+TGG + Chr1:9417712-9417731 MsG0180000663.01.T01:three_prime_UTR 45.0%
TTCTAGGTGCATACTGGAGA+AGG - Chr1:9417382-9417401 None:intergenic 45.0%
TTGCCTCATTGTGACAATGG+CGG - Chr1:9411510-9411529 None:intergenic 45.0%
TTGCTCCGGTAAAGGTTCAT+CGG + Chr1:9413746-9413765 MsG0180000663.01.T01:intron 45.0%
TTGGCATATGCATGCATGTG+TGG + Chr1:9411792-9411811 MsG0180000663.01.T01:intron 45.0%
TTTGATCCATCTCCAACTGC+AGG + Chr1:9410077-9410096 MsG0180000663.01.T01:five_prime_UTR 45.0%
TTTGCAGATGCCAACACTAC+CGG + Chr1:9411438-9411457 MsG0180000663.01.T01:CDS 45.0%
! AAGAGATAGCTTTACCCCGA+AGG - Chr1:9413607-9413626 None:intergenic 45.0%
! AAGTCAAACACTTCGGGTTC+GGG - Chr1:9413331-9413350 None:intergenic 45.0%
! ACAATGCGTTGGTGTTTACC+TGG + Chr1:9411033-9411052 MsG0180000663.01.T01:five_prime_UTR 45.0%
! ACTTTGTGGCACTGAACAAG+AGG + Chr1:9415000-9415019 MsG0180000663.01.T01:intron 45.0%
! AGACCGACTTTGAACAGAGA+GGG - Chr1:9417004-9417023 None:intergenic 45.0%
! AGGTTCTTCCAGGTGTTTTG+TGG + Chr1:9415241-9415260 MsG0180000663.01.T01:intron 45.0%
! CACCTAGAAGCATAGACTTG+CGG + Chr1:9417393-9417412 MsG0180000663.01.T01:intron 45.0%
! CAGCATTCTGAGAAACGTGA+AGG + Chr1:9413769-9413788 MsG0180000663.01.T01:intron 45.0%
! CAGTGTTTTCAATCGCAGAG+AGG + Chr1:9411707-9411726 MsG0180000663.01.T01:intron 45.0%
! CTCTTGTTGTCGTGTGTTGT+AGG - Chr1:9417557-9417576 None:intergenic 45.0%
! CTTGCTAACTTGTGCCCTAA+GGG - Chr1:9415987-9416006 None:intergenic 45.0%
! GGATTCGGTTCTGTTGTGAT+AGG + Chr1:9408925-9408944 MsG0180000663.01.T01:five_prime_UTR 45.0%
! GTCTTGTTGTGTTCCTCTCT+GGG + Chr1:9410933-9410952 MsG0180000663.01.T01:five_prime_UTR 45.0%
! TCTTGCTAACTTGTGCCCTA+AGG - Chr1:9415988-9416007 None:intergenic 45.0%
! TCTTGTTGTGTTCCTCTCTG+GGG + Chr1:9410934-9410953 MsG0180000663.01.T01:five_prime_UTR 45.0%
! TGAGTTCTGACACAAAGCCA+AGG - Chr1:9416306-9416325 None:intergenic 45.0%
! TGCTGATTACAATTGGCCTG+CGG + Chr1:9410993-9411012 MsG0180000663.01.T01:five_prime_UTR 45.0%
! TGCTGTATTCTGTCGTTTGG+TGG + Chr1:9417786-9417805 MsG0180000663.01.T01:three_prime_UTR 45.0%
! TGGTGTTTACCTGGCTTGAT+GGG + Chr1:9411042-9411061 MsG0180000663.01.T01:five_prime_UTR 45.0%
! TGTCTTGTTGTGTTCCTCTC+TGG + Chr1:9410932-9410951 MsG0180000663.01.T01:five_prime_UTR 45.0%
! TTCTCCGAGGTTGATTGAGT+TGG + Chr1:9413130-9413149 MsG0180000663.01.T01:intron 45.0%
! TTGATAGCAGCTACGACCTT+CGG + Chr1:9413588-9413607 MsG0180000663.01.T01:intron 45.0%
! TTGGTGTTTACCTGGCTTGA+TGG + Chr1:9411041-9411060 MsG0180000663.01.T01:five_prime_UTR 45.0%
!! AGTTGATGATGAGGGCACAT+TGG + Chr1:9413171-9413190 MsG0180000663.01.T01:intron 45.0%
!! ATCAAGAGGTCTTGGTTTGG+AGG + Chr1:9409289-9409308 MsG0180000663.01.T01:five_prime_UTR 45.0%
!! ATGGGGAAGGCATTAAAAGG+AGG - Chr1:9410119-9410138 None:intergenic 45.0%
!! CAGATGGGGAAGGCATTAAA+AGG - Chr1:9410122-9410141 None:intergenic 45.0%
!! CCCGAAGTGTTTGACTTTTG+TGG + Chr1:9413334-9413353 MsG0180000663.01.T01:intron 45.0%
!! GATTGAGTTGGTTCCTCTGA+GGG + Chr1:9413142-9413161 MsG0180000663.01.T01:intron 45.0%
!! GATTTGCTGACCTTAAGGCT+TGG - Chr1:9413839-9413858 None:intergenic 45.0%
!! GGGTGATTGAGTTGATGATG+AGG + Chr1:9413162-9413181 MsG0180000663.01.T01:intron 45.0%
!! GTTGATGATGAGGGCACATT+GGG + Chr1:9413172-9413191 MsG0180000663.01.T01:intron 45.0%
!! TGATTGAGTTGGTTCCTCTG+AGG + Chr1:9413141-9413160 MsG0180000663.01.T01:intron 45.0%
!! TTCCTGTCACAGTACTGACA+GGG + Chr1:9413708-9413727 MsG0180000663.01.T01:intron 45.0%
!! TTCTCCAAGGCTTTGGAAGT+GGG + Chr1:9413800-9413819 MsG0180000663.01.T01:intron 45.0%
!! TTCTGTCGTTTGGTGGATTC+GGG + Chr1:9417793-9417812 MsG0180000663.01.T01:three_prime_UTR 45.0%
!! TTTCCTGTCACAGTACTGAC+AGG + Chr1:9413707-9413726 MsG0180000663.01.T01:intron 45.0%
!! CATATTATAAAAAATATATT+AGG - Chr1:9411546-9411565 None:intergenic 5.0%
!! TATATTAAATATATGTATTA+AGG + Chr1:9414365-9414384 MsG0180000663.01.T01:intron 5.0%
AAATGCTAACGCGTGCCCTA+AGG + Chr1:9415840-9415859 MsG0180000663.01.T01:intron 50.0%
AACCACTAGAGGCCTGTGAT+AGG - Chr1:9409779-9409798 None:intergenic 50.0%
AATGCTAACGCGTGCCCTAA+GGG + Chr1:9415841-9415860 MsG0180000663.01.T01:intron 50.0%
AGTCCTACTCCTCCCTATCA+AGG - Chr1:9413549-9413568 None:intergenic 50.0%
ATGCATTGCTCCTTCCACAC+AGG - Chr1:9416546-9416565 None:intergenic 50.0%
CACTTCCAAAGCCTTGGAGA+AGG - Chr1:9413801-9413820 None:intergenic 50.0%
CCCTCGCAACACCACAATTT+GGG - Chr1:9413404-9413423 None:intergenic 50.0%
CCTCAAGCGCAAAATGATGG+AGG - Chr1:9413933-9413952 None:intergenic 50.0%
CTTCCAAAGCCTTGGAGAAG+GGG - Chr1:9413799-9413818 None:intergenic 50.0%
GAAGGTGAACCAAGCCAAGA+AGG + Chr1:9413459-9413478 MsG0180000663.01.T01:intron 50.0%
GATTTCTTGCATACTGCCGC+AGG - Chr1:9411012-9411031 None:intergenic 50.0%
GCTCTTGGAGGACACCAAAA+CGG - Chr1:9413672-9413691 None:intergenic 50.0%
GCTGTTCTCTCTTGGCTACA+AGG + Chr1:9417671-9417690 MsG0180000663.01.T01:three_prime_UTR 50.0%
GGAGGAGTAGGACTGTGAAA+AGG + Chr1:9413555-9413574 MsG0180000663.01.T01:intron 50.0%
GTCCTACTCCTCCCTATCAA+GGG - Chr1:9413548-9413567 None:intergenic 50.0%
GTCGTGTCTGGTGTATGTGT+CGG - Chr1:9409188-9409207 None:intergenic 50.0%
GTGCTATAGCACTGTCGTAG+CGG - Chr1:9414452-9414471 None:intergenic 50.0%
TAAGGTAGGTTCGCCCTTTG+TGG + Chr1:9410673-9410692 MsG0180000663.01.T01:intron 50.0%
TACTGTCAGGAGGTTCTTCC+AGG + Chr1:9415231-9415250 MsG0180000663.01.T01:intron 50.0%
TAGAGGCCTGTGATAGGAAC+AGG - Chr1:9409773-9409792 None:intergenic 50.0%
TCAAATCCGGAATCCTTGCC+TGG + Chr1:9411282-9411301 MsG0180000663.01.T01:CDS 50.0%
TCTCGTGATCCTACTGGAGA+AGG - Chr1:9413214-9413233 None:intergenic 50.0%
TCTTCTCCAGGCAAGGATTC+CGG - Chr1:9411291-9411310 None:intergenic 50.0%
TGAACCAAGCCAAGAAGGCA+AGG + Chr1:9413464-9413483 MsG0180000663.01.T01:intron 50.0%
TGAACCTTTACCGGAGCAAG+AGG - Chr1:9413745-9413764 None:intergenic 50.0%
TGATAGCAGCTACGACCTTC+GGG + Chr1:9413589-9413608 MsG0180000663.01.T01:intron 50.0%
TGCATTGCTCCTTCCACACA+GGG - Chr1:9416545-9416564 None:intergenic 50.0%
TGCTGCCGATGAACCTTTAC+CGG - Chr1:9413754-9413773 None:intergenic 50.0%
TTCACCTCTTGCTCCGGTAA+AGG + Chr1:9413738-9413757 MsG0180000663.01.T01:intron 50.0%
TTCCCTGTCAGTACTGTGAC+AGG - Chr1:9413713-9413732 None:intergenic 50.0%
TTCCTATCACAGGCCTCTAG+TGG + Chr1:9409774-9409793 MsG0180000663.01.T01:five_prime_UTR 50.0%
TTCGCACTACTTCAGGGACT+AGG - Chr1:9410485-9410504 None:intergenic 50.0%
TTGCCGCCATTGTCACAATG+AGG + Chr1:9411504-9411523 MsG0180000663.01.T01:CDS 50.0%
TTGCTTCCTGCAGTTGGAGA+TGG - Chr1:9410086-9410105 None:intergenic 50.0%
TTGGAGCTTCGTATGGGTGT+GGG + Chr1:9410257-9410276 MsG0180000663.01.T01:five_prime_UTR 50.0%
TTGTCGGACAGCAAGAGGAA+TGG + Chr1:9410325-9410344 MsG0180000663.01.T01:five_prime_UTR 50.0%
TTTACCGGAGCAAGAGGTGA+AGG - Chr1:9413739-9413758 None:intergenic 50.0%
TTTAGTCACCCCATCAAGCC+AGG - Chr1:9411054-9411073 None:intergenic 50.0%
TTTGGATGCCCTTGATAGGG+AGG + Chr1:9413537-9413556 MsG0180000663.01.T01:intron 50.0%
TTTGTCCCCAGCATTTCCGA+TGG + Chr1:9413955-9413974 MsG0180000663.01.T01:intron 50.0%
! CAAACTCCTCGATTGGCTGA+GGG - Chr1:9413289-9413308 None:intergenic 50.0%
! CAGACCGACTTTGAACAGAG+AGG - Chr1:9417005-9417024 None:intergenic 50.0%
! CCTCCATCATTTTGCGCTTG+AGG + Chr1:9413930-9413949 MsG0180000663.01.T01:intron 50.0%
! GATAGCTTGTATCATGGGCG+AGG + Chr1:9411176-9411195 MsG0180000663.01.T01:exon 50.0%
! GCTAACTTGCACAACCCAGT+TGG - Chr1:9413507-9413526 None:intergenic 50.0%
! GGACACGCTTATGACCGTTT+TGG + Chr1:9413655-9413674 MsG0180000663.01.T01:intron 50.0%
! GGTGTTTACCTGGCTTGATG+GGG + Chr1:9411043-9411062 MsG0180000663.01.T01:five_prime_UTR 50.0%
! GTGGGGTTTTTCACAGCCTT+CGG - Chr1:9410874-9410893 None:intergenic 50.0%
! TCAAACTCCTCGATTGGCTG+AGG - Chr1:9413290-9413309 None:intergenic 50.0%
! TGGGGTTTTTCACAGCCTTC+GGG - Chr1:9410873-9410892 None:intergenic 50.0%
! TGTGGCACTGAACAAGAGGT+GGG + Chr1:9415004-9415023 MsG0180000663.01.T01:intron 50.0%
! TTGTGGCACTGAACAAGAGG+TGG + Chr1:9415003-9415022 MsG0180000663.01.T01:intron 50.0%
!! ACCTGTTTGACTTGGTGTCG+AGG - Chr1:9414856-9414875 None:intergenic 50.0%
!! CCAAATTGTGGTGTTGCGAG+GGG + Chr1:9413402-9413421 MsG0180000663.01.T01:intron 50.0%
!! CCCAAATTGTGGTGTTGCGA+GGG + Chr1:9413401-9413420 MsG0180000663.01.T01:intron 50.0%
!! CGTTTGGTGGATTCGGGTTA+GGG + Chr1:9417799-9417818 MsG0180000663.01.T01:three_prime_UTR 50.0%
!! CTTCTCCAAGGCTTTGGAAG+TGG + Chr1:9413799-9413818 MsG0180000663.01.T01:intron 50.0%
!! GAGGTTGGTGGTATTCCCTT+TGG + Chr1:9413875-9413894 MsG0180000663.01.T01:intron 50.0%
!! TCCCAAATTGTGGTGTTGCG+AGG + Chr1:9413400-9413419 MsG0180000663.01.T01:intron 50.0%
!! TCGTTTGGTGGATTCGGGTT+AGG + Chr1:9417798-9417817 MsG0180000663.01.T01:three_prime_UTR 50.0%
!! TCTTGGCTTGGTTCACCTTC+TGG - Chr1:9413459-9413478 None:intergenic 50.0%
AACGCCCACTTCCAAAGCCT+TGG - Chr1:9413807-9413826 None:intergenic 55.0%
ACCGGAGAAGATGCCGAATC+AGG + Chr1:9411456-9411475 MsG0180000663.01.T01:CDS 55.0%
AGCTTGTATCATGGGCGAGG+TGG + Chr1:9411179-9411198 MsG0180000663.01.T01:exon 55.0%
ATCCCTCCATAGCCACCAGA+AGG + Chr1:9413441-9413460 MsG0180000663.01.T01:intron 55.0%
CACCTTCTGGTGGCTATGGA+GGG - Chr1:9413446-9413465 None:intergenic 55.0%
CCCCTCGCAACACCACAATT+TGG - Chr1:9413405-9413424 None:intergenic 55.0%
CCGGAGAAGATGCCGAATCA+GGG + Chr1:9411457-9411476 MsG0180000663.01.T01:CDS 55.0%
CCTGGTCCTGTTCCTATCAC+AGG + Chr1:9409764-9409783 MsG0180000663.01.T01:five_prime_UTR 55.0%
CCTGTGATAGGAACAGGACC+AGG - Chr1:9409767-9409786 None:intergenic 55.0%
GATAGCAGCTACGACCTTCG+GGG + Chr1:9413590-9413609 MsG0180000663.01.T01:intron 55.0%
GCATTGCTCCTTCCACACAG+GGG - Chr1:9416544-9416563 None:intergenic 55.0%
GCCTCGACACCAAGTCAAAC+AGG + Chr1:9414852-9414871 MsG0180000663.01.T01:CDS 55.0%
GCGGTGACTGTGTGACATCA+AGG - Chr1:9409700-9409719 None:intergenic 55.0%
GGCATCTTCTCCGGTAGTGT+TGG - Chr1:9411451-9411470 None:intergenic 55.0%
GGTTCACCTTCTGGTGGCTA+TGG - Chr1:9413450-9413469 None:intergenic 55.0%
GTTGGAGCTTCGTATGGGTG+TGG + Chr1:9410256-9410275 MsG0180000663.01.T01:five_prime_UTR 55.0%
TCACCTTCTGGTGGCTATGG+AGG - Chr1:9413447-9413466 None:intergenic 55.0%
TGCCCTTGATAGGGAGGAGT+AGG + Chr1:9413543-9413562 MsG0180000663.01.T01:intron 55.0%
TGTTCACATGGGCGCCAACT+GGG + Chr1:9413490-9413509 MsG0180000663.01.T01:intron 55.0%
TTGCAACAGGGGCCCTGATT+CGG - Chr1:9411472-9411491 None:intergenic 55.0%
TTGTTCACATGGGCGCCAAC+TGG + Chr1:9413489-9413508 MsG0180000663.01.T01:intron 55.0%
! CTTTCACAGGGCATCCGAAG+TGG + Chr1:9409954-9409973 MsG0180000663.01.T01:five_prime_UTR 55.0%
! GCGCAAAATGATGGAGGAGC+AGG - Chr1:9413927-9413946 None:intergenic 55.0%
! GGCTTCAGAGTGTCCCATGA+CGG + Chr1:9414723-9414742 MsG0180000663.01.T01:intron 55.0%
! GGTGTTGCGAGGGGTGAATT+TGG + Chr1:9413411-9413430 MsG0180000663.01.T01:intron 55.0%
! TGTTGTGTTCCTCTCTGGGG+TGG + Chr1:9410937-9410956 MsG0180000663.01.T01:five_prime_UTR 55.0%
!! AAGGCTTTGGAAGTGGGCGT+TGG + Chr1:9413806-9413825 MsG0180000663.01.T01:intron 55.0%
!! AGGCTTTGGAAGTGGGCGTT+GGG + Chr1:9413807-9413826 MsG0180000663.01.T01:intron 55.0%
!! CCCTGATTCGGCATCTTCTC+CGG - Chr1:9411460-9411479 None:intergenic 55.0%
!! GAGGGCATTGAGCACAGAAC+AGG - Chr1:9414936-9414955 None:intergenic 55.0%
!! GAGGTCTTGGTTTGGAGGCA+AGG + Chr1:9409294-9409313 MsG0180000663.01.T01:five_prime_UTR 55.0%
!! TGGCTTGGTTCACCTTCTGG+TGG - Chr1:9413456-9413475 None:intergenic 55.0%
GAAGGTTCGCCCCTTCTCCA+AGG + Chr1:9413787-9413806 MsG0180000663.01.T01:intron 60.0%
GACAGTCACCCCTGTGTGGA+AGG + Chr1:9416533-9416552 MsG0180000663.01.T01:intron 60.0%
GAGAGACAGTCACCCCTGTG+TGG + Chr1:9416529-9416548 MsG0180000663.01.T01:intron 60.0%
GGAGCTCTGTGAGCACTCAC+TGG - Chr1:9416907-9416926 None:intergenic 60.0%
TCGCCCCTTCTCCAAGGCTT+TGG + Chr1:9413793-9413812 MsG0180000663.01.T01:intron 60.0%
TCTGCACCCTCAGCCAATCG+AGG + Chr1:9413280-9413299 MsG0180000663.01.T01:intron 60.0%
TGGGCGGAAGCCAAGCCTTA+AGG + Chr1:9413826-9413845 MsG0180000663.01.T01:intron 60.0%
!! CTCTCTGGGGTGGTGGTGAT+CGG + Chr1:9410947-9410966 MsG0180000663.01.T01:five_prime_UTR 60.0%
!! CTTTGGAAGTGGGCGTTGGG+CGG + Chr1:9413810-9413829 MsG0180000663.01.T01:intron 60.0%
!! TGTGTTCCTCTCTGGGGTGG+TGG + Chr1:9410940-9410959 MsG0180000663.01.T01:five_prime_UTR 60.0%
CGATCACCACCACCCCAGAG+AGG - Chr1:9410949-9410968 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 9408655 9417907 9408655 ID=MsG0180000663.01;Name=MsG0180000663.01
Chr1 mRNA 9408655 9417907 9408655 ID=MsG0180000663.01.T01;Parent=MsG0180000663.01;Name=MsG0180000663.01.T01;_AED=0.50;_eAED=0.50;_QI=2438|0.57|0.62|1|0.42|0.37|8|378|218
Chr1 exon 9417473 9417907 9417473 ID=MsG0180000663.01.T01:exon:1891;Parent=MsG0180000663.01.T01
Chr1 exon 9416992 9417103 9416992 ID=MsG0180000663.01.T01:exon:1890;Parent=MsG0180000663.01.T01
Chr1 exon 9415670 9415731 9415670 ID=MsG0180000663.01.T01:exon:1889;Parent=MsG0180000663.01.T01
Chr1 exon 9415439 9415516 9415439 ID=MsG0180000663.01.T01:exon:1888;Parent=MsG0180000663.01.T01
Chr1 exon 9414814 9414894 9414814 ID=MsG0180000663.01.T01:exon:1887;Parent=MsG0180000663.01.T01
Chr1 exon 9411432 9411531 9411432 ID=MsG0180000663.01.T01:exon:1886;Parent=MsG0180000663.01.T01
Chr1 exon 9410773 9411355 9410773 ID=MsG0180000663.01.T01:exon:1885;Parent=MsG0180000663.01.T01
Chr1 exon 9408655 9410676 9408655 ID=MsG0180000663.01.T01:exon:1884;Parent=MsG0180000663.01.T01
Chr1 five_prime_UTR 9408655 9410676 9408655 ID=MsG0180000663.01.T01:five_prime_utr;Parent=MsG0180000663.01.T01
Chr1 five_prime_UTR 9410773 9411188 9410773 ID=MsG0180000663.01.T01:five_prime_utr;Parent=MsG0180000663.01.T01
Chr1 CDS 9411189 9411355 9411189 ID=MsG0180000663.01.T01:cds;Parent=MsG0180000663.01.T01
Chr1 CDS 9411432 9411531 9411432 ID=MsG0180000663.01.T01:cds;Parent=MsG0180000663.01.T01
Chr1 CDS 9414814 9414894 9414814 ID=MsG0180000663.01.T01:cds;Parent=MsG0180000663.01.T01
Chr1 CDS 9415439 9415516 9415439 ID=MsG0180000663.01.T01:cds;Parent=MsG0180000663.01.T01
Chr1 CDS 9415670 9415731 9415670 ID=MsG0180000663.01.T01:cds;Parent=MsG0180000663.01.T01
Chr1 CDS 9416992 9417103 9416992 ID=MsG0180000663.01.T01:cds;Parent=MsG0180000663.01.T01
Chr1 CDS 9417473 9417529 9417473 ID=MsG0180000663.01.T01:cds;Parent=MsG0180000663.01.T01
Chr1 three_prime_UTR 9417530 9417907 9417530 ID=MsG0180000663.01.T01:three_prime_utr;Parent=MsG0180000663.01.T01
Gene Sequence

>MsG0180000663.01.T01

ATGGGCGAGGTGGCAGTGTTGCATTCTGAGCCTCTGCAATTTGAATGCAATGACAAGAAACATATGACCGAAGAAGGCGTTTATCCTCCAAAATCAAATCCGGAATCCTTGCCTGGAGAAGAATCAAGTACATATGATTTGCAGGAGAAGGGATATATGGAACATGGACTTTATTTGCAGATGCCAACACTACCGGAGAAGATGCCGAATCAGGGCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACGTAGATTATAAGCATAGACACGACATGCCTCGACACCAAGTCAAACAGGTATTCTTATTTACTTGGGACGCGCAGCAAAATTGCGTTAATTGTGGTGTTTGCATGGGCAAGTACTTTTGTGATACATGCAAGCTCTACGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGGTATGAATTGATAACCTGGTTCACATGCCCTCTCTGTTCAAAGTCGGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACACCAATGCCTGAGCCATATCAAAACAAAATGGTTTGGATCCTGTGCAATGATTGTGGAAAAACCTCTAATGTCCGTTTCCATTTGTAG
Protein sequence

>MsG0180000663.01.T01

MGEVAVLHSEPLQFECNDKKHMTEEGVYPPKSNPESLPGEESSTYDLQEKGYMEHGLYLQMPTLPEKMPNQGPCCNEIFDCRHCHNEAKNDINVDYKHRHDMPRHQVKQVFLFTWDAQQNCVNCGVCMGKYFCDTCKLYDDDISKQQYHCNGCGICRYELITWFTCPLCSKSVCDMSKVWEKLDMEIAATPMPEPYQNKMVWILCNDCGKTSNVRFHL*