AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000764.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000764.01.T01 MTR_1g008990 94.690 339 10 3 1 332 1 338 0.0 647
MsG0180000764.01.T01 MTR_1g008990 92.276 246 11 3 1 239 1 245 1.36e-150 424
MsG0180000764.01.T01 MTR_3g109310 61.372 277 75 13 71 332 35 294 3.07e-93 280
MsG0180000764.01.T01 MTR_3g110010 66.929 127 38 4 169 292 633 758 1.22e-38 145
MsG0180000764.01.T01 MTR_3g109982 66.142 127 39 4 169 292 649 774 4.25e-38 144
MsG0180000764.01.T01 MTR_1g080920 53.237 139 61 2 119 253 162 300 4.23e-27 110
MsG0180000764.01.T01 MTR_7g115120 57.600 125 42 3 134 253 167 285 1.76e-25 105
MsG0180000764.01.T01 MTR_7g115140 43.810 105 58 1 133 237 103 206 7.76e-19 84.0
MsG0180000764.01.T01 MTR_1g022495 29.747 158 96 2 137 294 3 145 9.79e-12 62.8
MsG0180000764.01.T01 MTR_3g117120 41.558 77 45 0 162 238 27 103 1.12e-11 62.4
MsG0180000764.01.T01 MTR_7g029400 33.333 150 92 3 89 237 14 156 2.84e-11 62.4
MsG0180000764.01.T01 MTR_8g086020 34.884 86 56 0 159 244 29 114 4.15e-11 61.2
MsG0180000764.01.T01 MTR_8g015250 43.478 92 47 1 146 237 60 146 5.80e-11 61.2
MsG0180000764.01.T01 MTR_6g016375 40.385 104 56 3 150 252 77 175 6.77e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000764.01.T01 AT5G24800 46.640 253 101 7 92 332 46 276 3.33e-58 189
MsG0180000764.01.T01 AT5G28770 58.333 108 43 1 149 254 130 237 2.21e-24 101
MsG0180000764.01.T01 AT5G28770 58.333 108 43 1 149 254 137 244 2.26e-24 101
MsG0180000764.01.T01 AT5G28770 61.111 90 35 0 149 238 137 226 1.85e-20 89.4
MsG0180000764.01.T01 AT4G02640 45.652 138 73 1 113 248 163 300 3.52e-16 79.3
MsG0180000764.01.T01 AT4G02640 45.652 138 73 1 113 248 163 300 3.69e-16 79.3
MsG0180000764.01.T01 AT4G02640 53.097 113 51 1 138 248 194 306 1.28e-15 77.8
MsG0180000764.01.T01 AT4G02640 53.097 113 51 1 138 248 194 306 1.49e-15 77.4
MsG0180000764.01.T01 AT3G54620 51.136 88 43 0 161 248 227 314 4.32e-13 70.1
MsG0180000764.01.T01 AT1G75390 39.759 83 50 0 162 244 38 120 8.33e-12 63.5
MsG0180000764.01.T01 AT2G18160 36.190 105 57 1 140 244 16 110 1.22e-11 62.8
MsG0180000764.01.T01 AT3G30530 39.773 88 53 0 150 237 66 153 7.06e-11 60.8

Find 90 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTGGGAGTGAGGTTT+TGG 0.180329 1:-10805385 None:intergenic
TGTTCAATTGACTCTGATTT+TGG 0.206784 1:-10807908 None:intergenic
AGTATTACCGGTGGCATAAA+TGG 0.282549 1:-10805441 None:intergenic
GGCAGAATGGTGCTCCATTT+TGG 0.285783 1:-10802586 None:intergenic
TTATAAGTCTAATTGCATTA+TGG 0.294575 1:-10808529 None:intergenic
GTCATCGAAGCTGGAGAATA+TGG 0.297219 1:-10802617 None:intergenic
CATCTGTAAGCTGCTTAAAT+AGG 0.310185 1:-10807365 None:intergenic
TTTGGCAGACCTTGAGGTTC+AGG 0.310946 1:+10807184 MsG0180000764.01.T01:CDS
CCTGCGAAATGGAACCAAAA+TGG 0.330729 1:+10802572 MsG0180000764.01.T01:exon
CTAAGACGCTTCATATCAAC+AGG 0.337570 1:-10806400 None:intergenic
TGCAGTGATGGTGGAGTTCT+TGG 0.341951 1:-10805399 None:intergenic
ATTGCTGTTTCGACGGTAAC+AGG 0.344873 1:-10802688 None:intergenic
TGAGCTCTTTGACTAGCTTA+TGG 0.345147 1:+10808111 MsG0180000764.01.T01:CDS
GTGATGGTGTATAATGTATA+TGG 0.354804 1:+10808347 MsG0180000764.01.T01:three_prime_UTR
AAGAAGAAAACAAGCACATT+TGG 0.358483 1:+10807166 MsG0180000764.01.T01:CDS
TGTTGTTGTAGTCACTCCTT+TGG 0.367802 1:-10806311 None:intergenic
ACAAACTTGGATATTCTAAC+TGG 0.384901 1:-10808170 None:intergenic
GGTGAAGTTAGCAGAGGATA+TGG 0.388906 1:+10807845 MsG0180000764.01.T01:intron
AACTTTATATATATACTTAG+TGG 0.406476 1:+10808260 MsG0180000764.01.T01:three_prime_UTR
CAGAATTCAGCTATTGGACT+TGG 0.407633 1:+10808032 MsG0180000764.01.T01:CDS
AGTGGACAGAATTCAGCTAT+TGG 0.421178 1:+10808026 MsG0180000764.01.T01:CDS
CCAGCTTCGATGACCTCAAA+TGG 0.421645 1:+10802626 MsG0180000764.01.T01:CDS
CTGGAGAATATGGAGGTTGC+TGG 0.422279 1:-10802607 None:intergenic
TTTCCATGGACGGTGATTGT+AGG 0.427364 1:-10807984 None:intergenic
CATGGAAACGACGCTTCATA+TGG 0.432634 1:+10807999 MsG0180000764.01.T01:CDS
GTCTATTGACATTGGAATCA+TGG 0.432876 1:+10808400 MsG0180000764.01.T01:three_prime_UTR
CAAACAAGAGTATTATTTGT+TGG 0.433570 1:-10805359 None:intergenic
CACTAGTAATCTCCGTTGTA+TGG 0.434010 1:+10807950 MsG0180000764.01.T01:CDS
TGTTAGCATCGCGAAATTGT+TGG 0.440152 1:-10807392 None:intergenic
TTGATATGAAGCGTCTTAGA+AGG 0.440492 1:+10806404 MsG0180000764.01.T01:CDS
CCATTTGAGGTCATCGAAGC+TGG 0.443299 1:-10802626 None:intergenic
TTAGGTTGAACAGCTGAGGC+TGG 0.444559 1:+10807332 MsG0180000764.01.T01:intron
CATATGAAGCGTCGTTTCCA+TGG 0.454343 1:-10807998 None:intergenic
GACGCTTCATATGGTGTTAG+TGG 0.460901 1:+10808008 MsG0180000764.01.T01:CDS
ACATCGCCGACACCGATGAA+TGG 0.462932 1:-10802745 None:intergenic
ATTCTGCTGTGATCCATTTG+AGG 0.470171 1:-10802639 None:intergenic
AGCAGAGGATATGGTCTCTA+GGG 0.483549 1:+10807854 MsG0180000764.01.T01:CDS
GCAGTGATGGTGGAGTTCTT+GGG 0.488823 1:-10805398 None:intergenic
TGGTGGAGTTCTTGGGAGTG+AGG 0.489497 1:-10805391 None:intergenic
AGATTACTAGTGTTGATTTG+TGG 0.491316 1:-10807939 None:intergenic
TTAGTGGTGTATGTATCAAA+TGG 0.494849 1:+10808276 MsG0180000764.01.T01:three_prime_UTR
ACTGACCAGATTATGAAAAT+CGG 0.504341 1:-10802794 None:intergenic
TAGCAGAGGATATGGTCTCT+AGG 0.512033 1:+10807853 MsG0180000764.01.T01:CDS
CGATGTAAAACCGTGTAAGA+TGG 0.513999 1:+10802720 MsG0180000764.01.T01:CDS
AGAAGCTGGTTGTTAAAAGT+AGG 0.514450 1:-10807885 None:intergenic
TGCAGTCATGATTTCAACAA+TGG 0.523773 1:+10808071 MsG0180000764.01.T01:CDS
ATTATGAAAATCGGCGGTGT+CGG 0.528802 1:-10802785 None:intergenic
ACTAATTTAGCAAACAATCA+AGG 0.529332 1:-10808305 None:intergenic
TGTTGAAGCTTTAAGAGCTA+AGG 0.529338 1:+10807440 MsG0180000764.01.T01:CDS
TGAAATATGTCTATTGACAT+TGG 0.529642 1:+10808392 MsG0180000764.01.T01:three_prime_UTR
AGCTCTTAAAGCTTCAACAT+CGG 0.530694 1:-10807436 None:intergenic
GCTTCATCATCTTCATCAGA+TGG 0.530813 1:-10806352 None:intergenic
CTCAATAGTTGCAGTGATGG+TGG 0.531409 1:-10805408 None:intergenic
ACATGTTGAAAATGAAGTTA+CGG 0.531605 1:-10805330 None:intergenic
TTTCTTAGGTTGAACAGCTG+AGG 0.532387 1:+10807328 MsG0180000764.01.T01:intron
AAAACAAGCATACACAAACT+TGG 0.533401 1:-10808183 None:intergenic
TCGCCTACAATCACCGTCCA+TGG 0.536280 1:+10807981 MsG0180000764.01.T01:CDS
CAATCATCCATTTATGCCAC+CGG 0.538188 1:+10805434 MsG0180000764.01.T01:CDS
TGAAGCGTCGTTTCCATGGA+CGG 0.541190 1:-10807994 None:intergenic
AGTCTAATTGCATTATGGCA+TGG 0.548286 1:-10808524 None:intergenic
TGACATTGGAATCATGGTAA+AGG 0.549574 1:+10808406 MsG0180000764.01.T01:three_prime_UTR
AGCATCGCGAAATTGTTGGC+TGG 0.553901 1:-10807388 None:intergenic
GTCGTCGATTGCTGTTTCGA+CGG 0.555171 1:-10802695 None:intergenic
AGTAGAGAAAATCAAACCAA+AGG 0.561027 1:+10806295 MsG0180000764.01.T01:CDS
GGTGTCGGCGATGTTTGCTC+TGG 0.562967 1:+10802754 MsG0180000764.01.T01:CDS
AGCACATTTGGCAGACCTTG+AGG 0.572432 1:+10807178 MsG0180000764.01.T01:CDS
TCTGATGAAGATGATGAAGC+AGG 0.584800 1:+10806355 MsG0180000764.01.T01:CDS
GGGTTTGTACTTTGTTCACA+AGG 0.595616 1:-10806379 None:intergenic
AATTAATTACCTGAACCTCA+AGG 0.595756 1:-10807193 None:intergenic
ATGGATCCATTCATCGGTGT+CGG 0.602190 1:+10802739 MsG0180000764.01.T01:CDS
AGACTCAATAGTTGCAGTGA+TGG 0.603647 1:-10805411 None:intergenic
ATCAAGATCATTAATCAACA+TGG 0.604614 1:-10808475 None:intergenic
TATGGAGGTTGCTGGCAGAA+TGG 0.618667 1:-10802599 None:intergenic
GGAGTGACTACAACAACAAG+TGG 0.619797 1:+10806316 MsG0180000764.01.T01:CDS
TTACTAGTGTTGATTTGTGG+CGG 0.621086 1:-10807936 None:intergenic
TGTAAGATGGATCCATTCAT+CGG 0.623168 1:+10802733 MsG0180000764.01.T01:CDS
AACTGGACACTACAATATTG+TGG 0.637892 1:-10808153 None:intergenic
GCGAAACATGCGCCATACAA+CGG 0.641264 1:-10807962 None:intergenic
AATTTAGGTGAAGTTAGCAG+AGG 0.643088 1:+10807839 MsG0180000764.01.T01:intron
ATGTATATGGAACTCATTGG+TGG 0.643564 1:+10808360 MsG0180000764.01.T01:three_prime_UTR
ATGAATGGATCCATCTTACA+CGG 0.644634 1:-10802730 None:intergenic
TTCGTACTTAAAATAAACTG+AGG 0.645401 1:-10808451 None:intergenic
ATAATGTATATGGAACTCAT+TGG 0.648854 1:+10808357 MsG0180000764.01.T01:three_prime_UTR
TTCATCAGATGGATCACGTG+AGG 0.658342 1:-10806341 None:intergenic
GACCAGATTATGAAAATCGG+CGG 0.666849 1:-10802791 None:intergenic
CTAATCGCGAGTCTGCCAGA+AGG 0.671078 1:+10807138 MsG0180000764.01.T01:CDS
AGTGTTGATTTGTGGCGGAG+TGG 0.681459 1:-10807931 None:intergenic
GCAGAGGATATGGTCTCTAG+GGG 0.691454 1:+10807855 MsG0180000764.01.T01:CDS
ATCGAAGCTGGAGAATATGG+AGG 0.698276 1:-10802614 None:intergenic
TAAGACGCTTCATATCAACA+GGG 0.724365 1:-10806399 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAAATCACATTTAA+AGG - Chr1:10806958-10806977 None:intergenic 10.0%
!! ATATAATAGTAAATATAAAG+TGG + Chr1:10805760-10805779 MsG0180000764.01.T01:intron 10.0%
!! ATGATATATATAAACTATTA+TGG - Chr1:10806208-10806227 None:intergenic 10.0%
!!! AGAAATCATATTATTTTTTT+GGG + Chr1:10806633-10806652 MsG0180000764.01.T01:intron 10.0%
!!! ATTTTTTTTTTTGTTACAAA+AGG - Chr1:10807245-10807264 None:intergenic 10.0%
!!! CATAATTTTAACATTTTAAT+TGG - Chr1:10805658-10805677 None:intergenic 10.0%
!!! GTTTTTAATTGAATTAATTT+TGG - Chr1:10807064-10807083 None:intergenic 10.0%
!!! TTTATTATATTTTGTTTCTT+AGG + Chr1:10807314-10807333 MsG0180000764.01.T01:intron 10.0%
!! AAAAAAAGAAACAATTCATT+AGG - Chr1:10804975-10804994 None:intergenic 15.0%
!! AACTTTATATATATACTTAG+TGG + Chr1:10808260-10808279 MsG0180000764.01.T01:three_prime_UTR 15.0%
!! AATTTATAGTAAGATGAATT+AGG + Chr1:10804478-10804497 MsG0180000764.01.T01:intron 15.0%
!! ATAGAATACATCAATTATAA+AGG - Chr1:10803202-10803221 None:intergenic 15.0%
!! ATATAATAAAATTCTCATAG+TGG - Chr1:10807304-10807323 None:intergenic 15.0%
!! CAAAATAAAGAAATATAAAG+TGG + Chr1:10805811-10805830 MsG0180000764.01.T01:intron 15.0%
!! GTAAAAAAAATGAATAGAAA+AGG + Chr1:10804644-10804663 MsG0180000764.01.T01:intron 15.0%
!! TAAGTAATCTTATCTTATAT+TGG - Chr1:10806072-10806091 None:intergenic 15.0%
!! TATATATTATTCACCTAAAT+TGG - Chr1:10807773-10807792 None:intergenic 15.0%
!! TCTTATAATATATAAACTCA+TGG - Chr1:10806614-10806633 None:intergenic 15.0%
!! TTATGACAAAATAATAAATC+CGG + Chr1:10803305-10803324 MsG0180000764.01.T01:intron 15.0%
!!! AAATCATATTATTTTTTTGG+GGG + Chr1:10806635-10806654 MsG0180000764.01.T01:intron 15.0%
!!! AGACTAAATTTTACATTTTA+AGG - Chr1:10803075-10803094 None:intergenic 15.0%
!!! ATTTTTTAAATTCTCAATGT+TGG + Chr1:10806468-10806487 MsG0180000764.01.T01:intron 15.0%
!!! ATTTTTTTTGTCTTTTACTT+TGG + Chr1:10803851-10803870 MsG0180000764.01.T01:intron 15.0%
!!! CACTTTATATTTCTTTATTT+TGG - Chr1:10805813-10805832 None:intergenic 15.0%
!!! GAAATCATATTATTTTTTTG+GGG + Chr1:10806634-10806653 MsG0180000764.01.T01:intron 15.0%
!!! GAGAAATCATATTATTTTTT+TGG + Chr1:10806632-10806651 MsG0180000764.01.T01:intron 15.0%
!!! TTAGATACTTTTATTTCAAA+AGG + Chr1:10804129-10804148 MsG0180000764.01.T01:intron 15.0%
!!! TTTCTATGTTGTTTTATTTA+GGG + Chr1:10804898-10804917 MsG0180000764.01.T01:intron 15.0%
!!! TTTTCTATGTTGTTTTATTT+AGG + Chr1:10804897-10804916 MsG0180000764.01.T01:intron 15.0%
!!! TTTTTTTTGTCTTTTACTTT+GGG + Chr1:10803852-10803871 MsG0180000764.01.T01:intron 15.0%
!! AAATCATCATTTATTATTGC+TGG + Chr1:10802946-10802965 MsG0180000764.01.T01:intron 20.0%
!! AATATAATAGAAAAGAAGAG+AGG - Chr1:10804559-10804578 None:intergenic 20.0%
!! ACAATGAAGTTATCTATAAA+GGG - Chr1:10806145-10806164 None:intergenic 20.0%
!! ACATGGATTTCTTAAATTTA+TGG - Chr1:10805875-10805894 None:intergenic 20.0%
!! AGAGAAATTATAATCTAACA+AGG + Chr1:10806660-10806679 MsG0180000764.01.T01:intron 20.0%
!! ATATAATAGAAAAGAAGAGA+GGG - Chr1:10804558-10804577 None:intergenic 20.0%
!! ATGGAATTTGGTATATTTAA+AGG + Chr1:10803546-10803565 MsG0180000764.01.T01:intron 20.0%
!! ATTAACCAAACAACAAAAAT+AGG - Chr1:10804363-10804382 None:intergenic 20.0%
!! GAGATTTCTATTTGAATAAA+GGG + Chr1:10804325-10804344 MsG0180000764.01.T01:intron 20.0%
!! TAAATATAAAGTGGAGTTTA+GGG + Chr1:10805769-10805788 MsG0180000764.01.T01:intron 20.0%
!! TACAATGAAGTTATCTATAA+AGG - Chr1:10806146-10806165 None:intergenic 20.0%
!! TCTATCTTAATTCTTTGATT+TGG - Chr1:10803499-10803518 None:intergenic 20.0%
!! TGAGATTTCTATTTGAATAA+AGG + Chr1:10804324-10804343 MsG0180000764.01.T01:intron 20.0%
!! TGGAATTTGGTATATTTAAA+GGG + Chr1:10803547-10803566 MsG0180000764.01.T01:intron 20.0%
!! TTAACCAAACAACAAAAATA+GGG - Chr1:10804362-10804381 None:intergenic 20.0%
!! TTATAAGTCTAATTGCATTA+TGG - Chr1:10808532-10808551 None:intergenic 20.0%
!! TTCAAAAAAATTCTCAATGT+TGG + Chr1:10806495-10806514 MsG0180000764.01.T01:intron 20.0%
!!! AAATTGATTTTGGTATGTTT+TGG + Chr1:10806857-10806876 MsG0180000764.01.T01:intron 20.0%
!!! AAGAATTTTATGACCAATTT+AGG + Chr1:10807757-10807776 MsG0180000764.01.T01:intron 20.0%
!!! AAGAATTTTATGTCCAATTT+AGG + Chr1:10807824-10807843 MsG0180000764.01.T01:intron 20.0%
!!! AGAAATATGTTTCTTTTCTT+TGG + Chr1:10805556-10805575 MsG0180000764.01.T01:intron 20.0%
!!! ATAATAACAAAAGAGTATAG+TGG - Chr1:10803644-10803663 None:intergenic 20.0%
!!! ATATATCATAGAGCTTATTT+TGG + Chr1:10806219-10806238 MsG0180000764.01.T01:intron 20.0%
!!! ATGAACATCTTTTTTTTTTG+TGG - Chr1:10804017-10804036 None:intergenic 20.0%
!!! ATGATTTTTTACCTTCTTTA+AGG - Chr1:10805030-10805049 None:intergenic 20.0%
!!! ATTAAAGAAGAACTTTTACT+AGG + Chr1:10806548-10806567 MsG0180000764.01.T01:intron 20.0%
!!! ATTATAAAGGTTGATTTGAT+TGG - Chr1:10803189-10803208 None:intergenic 20.0%
!!! CATTTTTTTCCTGAATTAAT+AGG - Chr1:10805093-10805112 None:intergenic 20.0%
!!! GAGTTTTTTTTTTATGTGAA+TGG + Chr1:10803527-10803546 MsG0180000764.01.T01:intron 20.0%
!!! GTATCACTACAATTTTAATT+TGG - Chr1:10803397-10803416 None:intergenic 20.0%
!!! TACATTTTAAGGTGAATAAT+CGG - Chr1:10803064-10803083 None:intergenic 20.0%
!!! TATATAACATAGAGTATTAC+CGG - Chr1:10805456-10805475 None:intergenic 20.0%
!!! TCAATAATTCATGTTTGTTT+TGG - Chr1:10803432-10803451 None:intergenic 20.0%
!!! TGAAGACTTAAAATTGATTT+TGG + Chr1:10806847-10806866 MsG0180000764.01.T01:intron 20.0%
!!! TGCATATTTGAATTTACTTT+TGG + Chr1:10806806-10806825 MsG0180000764.01.T01:intron 20.0%
!!! TTCTATGTTGTTTTATTTAG+GGG + Chr1:10804899-10804918 MsG0180000764.01.T01:intron 20.0%
!!! TTTGCCAAAAATATTTTCTT+GGG + Chr1:10807689-10807708 MsG0180000764.01.T01:intron 20.0%
!!! TTTTGCCAAAAATATTTTCT+TGG + Chr1:10807688-10807707 MsG0180000764.01.T01:intron 20.0%
!!! TTTTGGATTGAATTGTATAA+TGG + Chr1:10806236-10806255 MsG0180000764.01.T01:intron 20.0%
!!! TTTTTAATAGTGTTTGATTG+AGG - Chr1:10804583-10804602 None:intergenic 20.0%
!!! TTTTTTATGTGAATGGAATT+TGG + Chr1:10803534-10803553 MsG0180000764.01.T01:intron 20.0%
! AAAAATGTTGTGTGACATAT+CGG + Chr1:10807567-10807586 MsG0180000764.01.T01:intron 25.0%
! AATAAAGACGTGTAAATGAA+AGG + Chr1:10804999-10805018 MsG0180000764.01.T01:intron 25.0%
! AATATAATAGAGCAACAACA+TGG + Chr1:10804667-10804686 MsG0180000764.01.T01:intron 25.0%
! ACATGTTGAAAATGAAGTTA+CGG - Chr1:10805333-10805352 None:intergenic 25.0%
! ACTAATTTAGCAAACAATCA+AGG - Chr1:10808308-10808327 None:intergenic 25.0%
! AGAGAGAAAAGAAAAAGAAA+AGG - Chr1:10802532-10802551 None:intergenic 25.0%
! ATAAAGTGGAGTCTTAAAAT+AGG + Chr1:10805825-10805844 MsG0180000764.01.T01:intron 25.0%
! ATAACTAGTGATTTCAAAGA+TGG - Chr1:10807268-10807287 None:intergenic 25.0%
! ATAATGTATATGGAACTCAT+TGG + Chr1:10808357-10808376 MsG0180000764.01.T01:three_prime_UTR 25.0%
! ATATAATAGAGCAACAACAT+GGG + Chr1:10804668-10804687 MsG0180000764.01.T01:intron 25.0%
! ATCAAGATCATTAATCAACA+TGG - Chr1:10808478-10808497 None:intergenic 25.0%
! CAATAATACTATAACTAGCT+AGG - Chr1:10804811-10804830 None:intergenic 25.0%
! GAAATTATAATCTAACAAGG+TGG + Chr1:10806663-10806682 MsG0180000764.01.T01:intron 25.0%
! GACAAATTGAAAAGGAATAT+AGG + Chr1:10804622-10804641 MsG0180000764.01.T01:intron 25.0%
! GAGAGAAAAGAAAAAGAAAA+GGG - Chr1:10802531-10802550 None:intergenic 25.0%
! GCTACATATGAAAATTTGAT+AGG + Chr1:10805050-10805069 MsG0180000764.01.T01:intron 25.0%
! GTAAATATAAAGTGGAGTTT+AGG + Chr1:10805768-10805787 MsG0180000764.01.T01:intron 25.0%
! TAATATATAAACTCATGGTC+TGG - Chr1:10806609-10806628 None:intergenic 25.0%
! TAGAAAAGCTAAGCTATAAA+AGG - Chr1:10804884-10804903 None:intergenic 25.0%
! TATAATTGACAACCAAACTT+TGG + Chr1:10804261-10804280 MsG0180000764.01.T01:intron 25.0%
! TCATTTATTATTGCTGGTAA+TGG + Chr1:10802952-10802971 MsG0180000764.01.T01:intron 25.0%
! TGAAATATGTCTATTGACAT+TGG + Chr1:10808392-10808411 MsG0180000764.01.T01:three_prime_UTR 25.0%
! TTACAAGTGACAAATTGAAA+AGG + Chr1:10804614-10804633 MsG0180000764.01.T01:intron 25.0%
! TTACGATTAGATTGCAAAAA+CGG + Chr1:10807497-10807516 MsG0180000764.01.T01:intron 25.0%
! TTCGTACTTAAAATAAACTG+AGG - Chr1:10808454-10808473 None:intergenic 25.0%
! TTTCTATTTGAATAAAGGGA+TGG + Chr1:10804329-10804348 MsG0180000764.01.T01:intron 25.0%
! TTTGCAAGCAAAATTTATAC+TGG - Chr1:10805499-10805518 None:intergenic 25.0%
!! AAAATTCTCATAGTGGAAAT+TGG - Chr1:10807297-10807316 None:intergenic 25.0%
!! CATATTTGTTAAGAGTCTAT+TGG - Chr1:10804756-10804775 None:intergenic 25.0%
!! GACTAATACAAGGTTTTTAT+TGG + Chr1:10804154-10804173 MsG0180000764.01.T01:intron 25.0%
!! GCTATAATTCATTCTTTTCT+TGG - Chr1:10804532-10804551 None:intergenic 25.0%
!! GGACATAATTTTCATATAGA+AGG - Chr1:10804706-10804725 None:intergenic 25.0%
!! GGATTTATCTAGTTCAAAAT+AGG - Chr1:10806588-10806607 None:intergenic 25.0%
!! TATCCCCAAGAAAATATTTT+TGG - Chr1:10807696-10807715 None:intergenic 25.0%
!! TTACATGAATTTGATGATCT+TGG - Chr1:10807648-10807667 None:intergenic 25.0%
!! TTAGAGTAATGTTATTTGTC+TGG - Chr1:10805256-10805275 None:intergenic 25.0%
!! TTGCCAAAAATATTTTCTTG+GGG + Chr1:10807690-10807709 MsG0180000764.01.T01:intron 25.0%
!!! AACATCTTTTTTTTTTGTGG+TGG - Chr1:10804014-10804033 None:intergenic 25.0%
!!! ACATTTTAAGGTGAATAATC+GGG - Chr1:10803063-10803082 None:intergenic 25.0%
!!! ATTAGAGATATTCAAGTTGT+TGG + Chr1:10803259-10803278 MsG0180000764.01.T01:intron 25.0%
!!! CAAACAAGAGTATTATTTGT+TGG - Chr1:10805362-10805381 None:intergenic 25.0%
!!! CTTTATTTTGGTACAAAAGA+GGG - Chr1:10805801-10805820 None:intergenic 25.0%
!!! CTTTTCTTGGTTAGTTTTTT+AGG - Chr1:10804519-10804538 None:intergenic 25.0%
!!! GAATTCTTGATTTGTAATCA+CGG - Chr1:10807604-10807623 None:intergenic 25.0%
!!! GGGATTTTTAAGATAATTGT+AGG + Chr1:10805915-10805934 MsG0180000764.01.T01:intron 25.0%
!!! TATCTTTACTTTTCATGAAG+TGG + Chr1:10804784-10804803 MsG0180000764.01.T01:intron 25.0%
!!! TCTTTATTTTGGTACAAAAG+AGG - Chr1:10805802-10805821 None:intergenic 25.0%
!!! TGTTTGTTTTGGTAGAATTA+CGG - Chr1:10803421-10803440 None:intergenic 25.0%
!!! TTTGATTTATACCTTTTGCT+TGG + Chr1:10804936-10804955 MsG0180000764.01.T01:intron 25.0%
AAAACAAGCATACACAAACT+TGG - Chr1:10808186-10808205 None:intergenic 30.0%
AAGAAGAAAACAAGCACATT+TGG + Chr1:10807166-10807185 MsG0180000764.01.T01:CDS 30.0%
AATCCATGTAATCATGAAGT+TGG + Chr1:10805886-10805905 MsG0180000764.01.T01:intron 30.0%
AATTAATTACCTGAACCTCA+AGG - Chr1:10807196-10807215 None:intergenic 30.0%
ACAAACTTGGATATTCTAAC+TGG - Chr1:10808173-10808192 None:intergenic 30.0%
ACTGACCAGATTATGAAAAT+CGG - Chr1:10802797-10802816 None:intergenic 30.0%
AGTAGAGAAAATCAAACCAA+AGG + Chr1:10806295-10806314 MsG0180000764.01.T01:CDS 30.0%
AGTCAAACATTAAACATGCA+TGG + Chr1:10804098-10804117 MsG0180000764.01.T01:intron 30.0%
AGTTGACAACCTATTAATTC+AGG + Chr1:10805081-10805100 MsG0180000764.01.T01:intron 30.0%
ATAGCGAATAACCATTGTAT+TGG - Chr1:10804188-10804207 None:intergenic 30.0%
ATATTTAAAGGGTGAAGCAA+AGG + Chr1:10803558-10803577 MsG0180000764.01.T01:intron 30.0%
CAAACTATATAACTTCAAGC+TGG - Chr1:10806926-10806945 None:intergenic 30.0%
CAATCTAATCGTAATACACA+TGG - Chr1:10807491-10807510 None:intergenic 30.0%
CATGTGATATTGAAGAAACT+TGG - Chr1:10804450-10804469 None:intergenic 30.0%
CTTCAAAGATATACTTCAAC+CGG - Chr1:10803327-10803346 None:intergenic 30.0%
GAAAGGAATATCCTTAAAGA+AGG + Chr1:10805016-10805035 MsG0180000764.01.T01:intron 30.0%
TAATACAACCGTAGTTAGTA+GGG - Chr1:10802897-10802916 None:intergenic 30.0%
TACACTCTTAATGTGATTTC+AGG + Chr1:10807108-10807127 MsG0180000764.01.T01:intron 30.0%
TATCAAAGTAGAAACTCCAA+AGG - Chr1:10802983-10803002 None:intergenic 30.0%
TCAAAAGGAAGACTAATACA+AGG + Chr1:10804144-10804163 MsG0180000764.01.T01:intron 30.0%
TCACATAGCTAGAATTTGAT+TGG + Chr1:10805182-10805201 MsG0180000764.01.T01:intron 30.0%
TGAAAATTATGTCCAATGCA+TGG + Chr1:10804712-10804731 MsG0180000764.01.T01:intron 30.0%
TGTAATTATGACTGTTGCAT+TGG - Chr1:10806100-10806119 None:intergenic 30.0%
TTAATACAACCGTAGTTAGT+AGG - Chr1:10802898-10802917 None:intergenic 30.0%
TTAGTGGTGTATGTATCAAA+TGG + Chr1:10808276-10808295 MsG0180000764.01.T01:three_prime_UTR 30.0%
! ACTTTGTTTAGTGATGAAGA+AGG + Chr1:10803607-10803626 MsG0180000764.01.T01:intron 30.0%
! ATTTTCATATAGAAGGCCAA+AGG - Chr1:10804699-10804718 None:intergenic 30.0%
! CAGTGTACTTTTACTACTTT+AGG - Chr1:10806752-10806771 None:intergenic 30.0%
! CTTTTTGTGTTATGATGCAA+TGG + Chr1:10806000-10806019 MsG0180000764.01.T01:intron 30.0%
! GTAACTTCATTTTCAACATG+TGG + Chr1:10805332-10805351 MsG0180000764.01.T01:CDS 30.0%
! GTGATGGTGTATAATGTATA+TGG + Chr1:10808347-10808366 MsG0180000764.01.T01:three_prime_UTR 30.0%
!! AGATTACTAGTGTTGATTTG+TGG - Chr1:10807942-10807961 None:intergenic 30.0%
!! GAATAACCATTGTATTGGTT+TGG - Chr1:10804183-10804202 None:intergenic 30.0%
!! TGTTCAATTGACTCTGATTT+TGG - Chr1:10807911-10807930 None:intergenic 30.0%
!!! AGTTTTTTAGGAGAAGCATA+GGG - Chr1:10804507-10804526 None:intergenic 30.0%
!!! GAAACCCTATTTTTGTTGTT+TGG + Chr1:10804355-10804374 MsG0180000764.01.T01:intron 30.0%
!!! TAGTTTTTTAGGAGAAGCAT+AGG - Chr1:10804508-10804527 None:intergenic 30.0%
!!! TCTTTTTTTTTTGTGGTGGT+CGG - Chr1:10804010-10804029 None:intergenic 30.0%
AAACGTTTCCCTACTAACTA+CGG + Chr1:10802886-10802905 MsG0180000764.01.T01:intron 35.0%
AACTGGACACTACAATATTG+TGG - Chr1:10808156-10808175 None:intergenic 35.0%
AAGGGCTGAATTAAGAACAA+TGG - Chr1:10805295-10805314 None:intergenic 35.0%
AAGTTCTATCACAAAACCAC+AGG - Chr1:10803469-10803488 None:intergenic 35.0%
AATCATGAAGTTGGCAAGTT+GGG + Chr1:10805895-10805914 MsG0180000764.01.T01:intron 35.0%
AATTATGACTGTTGCATTGG+TGG - Chr1:10806097-10806116 None:intergenic 35.0%
AATTTAGGTGAAGTTAGCAG+AGG + Chr1:10807839-10807858 MsG0180000764.01.T01:intron 35.0%
ACATGGAAGAACTTGTAAAG+TGG - Chr1:10807474-10807493 None:intergenic 35.0%
ACCTAATAGATACCATGCAT+TGG - Chr1:10804727-10804746 None:intergenic 35.0%
ACTGAAACATGAACATCTAG+AGG - Chr1:10803922-10803941 None:intergenic 35.0%
AGAAGCTGGTTGTTAAAAGT+AGG - Chr1:10807888-10807907 None:intergenic 35.0%
AGCTCTTAAAGCTTCAACAT+CGG - Chr1:10807439-10807458 None:intergenic 35.0%
AGGAGAGAAAAATGGAAAAG+AGG - Chr1:10802555-10802574 None:intergenic 35.0%
AGTCTAATTGCATTATGGCA+TGG - Chr1:10808527-10808546 None:intergenic 35.0%
ATCATACATGTGATCGTATG+TGG - Chr1:10805163-10805182 None:intergenic 35.0%
ATGAATGGATCCATCTTACA+CGG - Chr1:10802733-10802752 None:intergenic 35.0%
ATGTATATGGAACTCATTGG+TGG + Chr1:10808360-10808379 MsG0180000764.01.T01:three_prime_UTR 35.0%
ATTATTGCCCACAATCTTAG+CGG + Chr1:10804824-10804843 MsG0180000764.01.T01:intron 35.0%
CAAAAATGAAGTGAGTGTGA+TGG + Chr1:10808331-10808350 MsG0180000764.01.T01:three_prime_UTR 35.0%
CATCTGTAAGCTGCTTAAAT+AGG - Chr1:10807368-10807387 None:intergenic 35.0%
CATGTACATGATGACAATAG+AGG + Chr1:10806722-10806741 MsG0180000764.01.T01:intron 35.0%
CCATAAATTCTCTCTGCATA+AGG + Chr1:10804057-10804076 MsG0180000764.01.T01:intron 35.0%
CCTTATGCAGAGAGAATTTA+TGG - Chr1:10804060-10804079 None:intergenic 35.0%
CTATTGTCATCATGTACATG+TGG - Chr1:10806722-10806741 None:intergenic 35.0%
CTCTTAATGTGATTTCAGGA+AGG + Chr1:10807112-10807131 MsG0180000764.01.T01:intron 35.0%
GATATTGAAGAAACTTGGAG+AGG - Chr1:10804445-10804464 None:intergenic 35.0%
GCATAAGGTGATTATTTACG+AGG + Chr1:10804072-10804091 MsG0180000764.01.T01:intron 35.0%
GTCTATTGACATTGGAATCA+TGG + Chr1:10808400-10808419 MsG0180000764.01.T01:three_prime_UTR 35.0%
GTGTTCAACTTTCACGTTAA+CGG + Chr1:10806985-10807004 MsG0180000764.01.T01:intron 35.0%
TAAGACGCTTCATATCAACA+GGG - Chr1:10806402-10806421 None:intergenic 35.0%
TAATCATGAAGTTGGCAAGT+TGG + Chr1:10805894-10805913 MsG0180000764.01.T01:intron 35.0%
TCCAATGCATGGTATCTATT+AGG + Chr1:10804723-10804742 MsG0180000764.01.T01:intron 35.0%
TCTGCTAACTTCACCTAAAT+TGG - Chr1:10807840-10807859 None:intergenic 35.0%
TGACATTGGAATCATGGTAA+AGG + Chr1:10808406-10808425 MsG0180000764.01.T01:three_prime_UTR 35.0%
TGCAGTCATGATTTCAACAA+TGG + Chr1:10808071-10808090 MsG0180000764.01.T01:CDS 35.0%
TGCATAGTATATGCAAAGTC+CGG + Chr1:10803974-10803993 MsG0180000764.01.T01:intron 35.0%
TGTAAGATGGATCCATTCAT+CGG + Chr1:10802733-10802752 MsG0180000764.01.T01:CDS 35.0%
TGTGTTATGATGCAATGGTT+GGG + Chr1:10806005-10806024 MsG0180000764.01.T01:intron 35.0%
TTGCCAACTTCATGATTACA+TGG - Chr1:10805892-10805911 None:intergenic 35.0%
TTGTGTTATGATGCAATGGT+TGG + Chr1:10806004-10806023 MsG0180000764.01.T01:intron 35.0%
TTTGTAATCACGGTATGTGT+TGG - Chr1:10807594-10807613 None:intergenic 35.0%
! ATAACATAGAGTATTACCGG+TGG - Chr1:10805453-10805472 None:intergenic 35.0%
! ATCAATCTTTTCGCTTCCTT+CGG - Chr1:10804300-10804319 None:intergenic 35.0%
! ATTATGACTGTTGCATTGGT+GGG - Chr1:10806096-10806115 None:intergenic 35.0%
! CATCACACTCACTTCATTTT+TGG - Chr1:10808333-10808352 None:intergenic 35.0%
! GTTTTTGCTTTCCAAGCAAA+AGG - Chr1:10804950-10804969 None:intergenic 35.0%
! TTGATATGAAGCGTCTTAGA+AGG + Chr1:10806404-10806423 MsG0180000764.01.T01:CDS 35.0%
! TTGATCATGAACTTTTCACG+AGG + Chr1:10802662-10802681 MsG0180000764.01.T01:CDS 35.0%
!! AGAGATATTCAAGTTGTTGG+AGG + Chr1:10803262-10803281 MsG0180000764.01.T01:intron 35.0%
!! ATGTGCTTGTTTTCTTCTTC+TGG - Chr1:10807165-10807184 None:intergenic 35.0%
!! GTTTGATTTTCTCTACTGCT+TGG - Chr1:10806292-10806311 None:intergenic 35.0%
!! TAAAGTGGAGTTTAGGGTTT+TGG + Chr1:10805775-10805794 MsG0180000764.01.T01:intron 35.0%
!! TGTTGAAGCTTTAAGAGCTA+AGG + Chr1:10807440-10807459 MsG0180000764.01.T01:CDS 35.0%
!! TTACTAGTGTTGATTTGTGG+CGG - Chr1:10807939-10807958 None:intergenic 35.0%
!!! CTTTTTTTTTTGTGGTGGTC+GGG - Chr1:10804009-10804028 None:intergenic 35.0%
!!! TTTTTTTTTTGTGGTGGTCG+GGG - Chr1:10804008-10804027 None:intergenic 35.0%
AAGCTTGAAAGTCACGTTAG+AGG - Chr1:10802860-10802879 None:intergenic 40.0%
AGACTCAATAGTTGCAGTGA+TGG - Chr1:10805414-10805433 None:intergenic 40.0%
AGTATTACCGGTGGCATAAA+TGG - Chr1:10805444-10805463 None:intergenic 40.0%
AGTGGACAGAATTCAGCTAT+TGG + Chr1:10808026-10808045 MsG0180000764.01.T01:CDS 40.0%
ATTATGAAAATCGGCGGTGT+CGG - Chr1:10802788-10802807 None:intergenic 40.0%
ATTCAGCCCTTCATAATTGC+AGG + Chr1:10805304-10805323 MsG0180000764.01.T01:intron 40.0%
ATTCTGCTGTGATCCATTTG+AGG - Chr1:10802642-10802661 None:intergenic 40.0%
CAATCATCCATTTATGCCAC+CGG + Chr1:10805434-10805453 MsG0180000764.01.T01:CDS 40.0%
CACTAGTAATCTCCGTTGTA+TGG + Chr1:10807950-10807969 MsG0180000764.01.T01:CDS 40.0%
CAGAATTCAGCTATTGGACT+TGG + Chr1:10808032-10808051 MsG0180000764.01.T01:CDS 40.0%
CATAGTATATGCAAAGTCCG+GGG + Chr1:10803976-10803995 MsG0180000764.01.T01:intron 40.0%
CATTTCGCAGGAGAGAAAAA+TGG - Chr1:10802563-10802582 None:intergenic 40.0%
CGATGTAAAACCGTGTAAGA+TGG + Chr1:10802720-10802739 MsG0180000764.01.T01:CDS 40.0%
CGATTAGATTGCAAAAACGG+AGG + Chr1:10807500-10807519 MsG0180000764.01.T01:intron 40.0%
CTAAGACGCTTCATATCAAC+AGG - Chr1:10806403-10806422 None:intergenic 40.0%
CTTGGTTTATTAGCTGACAC+TGG - Chr1:10806274-10806293 None:intergenic 40.0%
GAAAGCAAACATGAAACCTG+TGG + Chr1:10803450-10803469 MsG0180000764.01.T01:intron 40.0%
GACCAGATTATGAAAATCGG+CGG - Chr1:10802794-10802813 None:intergenic 40.0%
GCATAGTATATGCAAAGTCC+GGG + Chr1:10803975-10803994 MsG0180000764.01.T01:intron 40.0%
GCTTCATCATCTTCATCAGA+TGG - Chr1:10806355-10806374 None:intergenic 40.0%
GGGTTTGTACTTTGTTCACA+AGG - Chr1:10806382-10806401 None:intergenic 40.0%
GTGTTATGATGCAATGGTTG+GGG + Chr1:10806006-10806025 MsG0180000764.01.T01:intron 40.0%
TCTGATGAAGATGATGAAGC+AGG + Chr1:10806355-10806374 MsG0180000764.01.T01:CDS 40.0%
TGAAGCAAAGGAACTTGTGA+AGG + Chr1:10803570-10803589 MsG0180000764.01.T01:intron 40.0%
TGAGAGACATGTCCAAAGTT+TGG - Chr1:10804276-10804295 None:intergenic 40.0%
TGGCTTCCAAACCAATACAA+TGG + Chr1:10804174-10804193 MsG0180000764.01.T01:intron 40.0%
TGTTAGCATCGCGAAATTGT+TGG - Chr1:10807395-10807414 None:intergenic 40.0%
TGTTGTTGTAGTCACTCCTT+TGG - Chr1:10806314-10806333 None:intergenic 40.0%
TTATTGCCCACAATCTTAGC+GGG + Chr1:10804825-10804844 MsG0180000764.01.T01:intron 40.0%
! ATCATGAACTTTTCACGAGG+CGG + Chr1:10802665-10802684 MsG0180000764.01.T01:CDS 40.0%
! CATTTTTCTCTCCTGCGAAA+TGG + Chr1:10802561-10802580 MsG0180000764.01.T01:exon 40.0%
! GTGTTGTCTTTTGAACTCGT+GGG + Chr1:10803789-10803808 MsG0180000764.01.T01:intron 40.0%
! TGTGTTGTCTTTTGAACTCG+TGG + Chr1:10803788-10803807 MsG0180000764.01.T01:intron 40.0%
! TTATGACTGTTGCATTGGTG+GGG - Chr1:10806095-10806114 None:intergenic 40.0%
! TTTTCTTCTTCTGGACCTTC+TGG - Chr1:10807156-10807175 None:intergenic 40.0%
!! CAACATCGGATTTTAGCACT+CGG - Chr1:10807425-10807444 None:intergenic 40.0%
!! TGAGCTCTTTGACTAGCTTA+TGG + Chr1:10808111-10808130 MsG0180000764.01.T01:CDS 40.0%
!! TTTCTTAGGTTGAACAGCTG+AGG + Chr1:10807328-10807347 MsG0180000764.01.T01:intron 40.0%
!!! GCTGGTAATGGTTTTTCCTT+TGG + Chr1:10802964-10802983 MsG0180000764.01.T01:intron 40.0%
AACAACATGGGTCGTTCCTT+TGG + Chr1:10804680-10804699 MsG0180000764.01.T01:intron 45.0%
ACGGCATCCTGCAATTATGA+AGG - Chr1:10805314-10805333 None:intergenic 45.0%
AGCAGAGGATATGGTCTCTA+GGG + Chr1:10807854-10807873 MsG0180000764.01.T01:CDS 45.0%
ATCGAAGCTGGAGAATATGG+AGG - Chr1:10802617-10802636 None:intergenic 45.0%
ATGGATCCATTCATCGGTGT+CGG + Chr1:10802739-10802758 MsG0180000764.01.T01:CDS 45.0%
CATGGAAACGACGCTTCATA+TGG + Chr1:10807999-10808018 MsG0180000764.01.T01:CDS 45.0%
CCTGCGAAATGGAACCAAAA+TGG + Chr1:10802572-10802591 MsG0180000764.01.T01:exon 45.0%
CGGCATCCTGCAATTATGAA+GGG - Chr1:10805313-10805332 None:intergenic 45.0%
CTCAATAGTTGCAGTGATGG+TGG - Chr1:10805411-10805430 None:intergenic 45.0%
GGAGTGACTACAACAACAAG+TGG + Chr1:10806316-10806335 MsG0180000764.01.T01:CDS 45.0%
GGTGAAGTTAGCAGAGGATA+TGG + Chr1:10807845-10807864 MsG0180000764.01.T01:intron 45.0%
GTCATCGAAGCTGGAGAATA+TGG - Chr1:10802620-10802639 None:intergenic 45.0%
TAGCAGAGGATATGGTCTCT+AGG + Chr1:10807853-10807872 MsG0180000764.01.T01:CDS 45.0%
TGGGAACGCACTACTTTATG+AGG + Chr1:10803808-10803827 MsG0180000764.01.T01:intron 45.0%
TTCATCAGATGGATCACGTG+AGG - Chr1:10806344-10806363 None:intergenic 45.0%
TTTCCATGGACGGTGATTGT+AGG - Chr1:10807987-10808006 None:intergenic 45.0%
! AAACAAAGTCCCTGATGACG+TGG - Chr1:10803596-10803615 None:intergenic 45.0%
! AGTTCTTGGGAGTGAGGTTT+TGG - Chr1:10805388-10805407 None:intergenic 45.0%
! GACGCTTCATATGGTGTTAG+TGG + Chr1:10808008-10808027 MsG0180000764.01.T01:CDS 45.0%
! GTTCTTGGGAGTGAGGTTTT+GGG - Chr1:10805387-10805406 None:intergenic 45.0%
!! ATTGCTGTTTCGACGGTAAC+AGG - Chr1:10802691-10802710 None:intergenic 45.0%
!! CATATGAAGCGTCGTTTCCA+TGG - Chr1:10808001-10808020 None:intergenic 45.0%
!! GACTCTGATTTTGGAGAAGC+TGG - Chr1:10807902-10807921 None:intergenic 45.0%
!!! CACCGCCGATTTTCATAATC+TGG + Chr1:10802789-10802808 MsG0180000764.01.T01:CDS 45.0%
!!! CCATTTTGGTTCCATTTCGC+AGG - Chr1:10802575-10802594 None:intergenic 45.0%
AACACTCCACCTCTTTCCCA+AGG - Chr1:10804852-10804871 None:intergenic 50.0%
AGCACATTTGGCAGACCTTG+AGG + Chr1:10807178-10807197 MsG0180000764.01.T01:CDS 50.0%
AGCATCGCGAAATTGTTGGC+TGG - Chr1:10807391-10807410 None:intergenic 50.0%
CAAGGACCCGCTAAGATTGT+GGG - Chr1:10804834-10804853 None:intergenic 50.0%
CCAGCTTCGATGACCTCAAA+TGG + Chr1:10802626-10802645 MsG0180000764.01.T01:CDS 50.0%
CTGGAGAATATGGAGGTTGC+TGG - Chr1:10802610-10802629 None:intergenic 50.0%
GCAGAGGATATGGTCTCTAG+GGG + Chr1:10807855-10807874 MsG0180000764.01.T01:CDS 50.0%
GCGAAACATGCGCCATACAA+CGG - Chr1:10807965-10807984 None:intergenic 50.0%
TATGGAGGTTGCTGGCAGAA+TGG - Chr1:10802602-10802621 None:intergenic 50.0%
TGGACATGTCTCTCAACCGA+AGG + Chr1:10804281-10804300 MsG0180000764.01.T01:intron 50.0%
TTGTGAAGGCCACGTCATCA+GGG + Chr1:10803584-10803603 MsG0180000764.01.T01:intron 50.0%
TTTGGCAGACCTTGAGGTTC+AGG + Chr1:10807184-10807203 MsG0180000764.01.T01:CDS 50.0%
! CACAATCTTAGCGGGTCCTT+GGG + Chr1:10804833-10804852 MsG0180000764.01.T01:intron 50.0%
! CCATTTGAGGTCATCGAAGC+TGG - Chr1:10802629-10802648 None:intergenic 50.0%
! GGCAGAATGGTGCTCCATTT+TGG - Chr1:10802589-10802608 None:intergenic 50.0%
!! AGTGTTGATTTGTGGCGGAG+TGG - Chr1:10807934-10807953 None:intergenic 50.0%
!! GCAGTGATGGTGGAGTTCTT+GGG - Chr1:10805401-10805420 None:intergenic 50.0%
!! GTCGTCGATTGCTGTTTCGA+CGG - Chr1:10802698-10802717 None:intergenic 50.0%
!! TGAAGCGTCGTTTCCATGGA+CGG - Chr1:10807997-10808016 None:intergenic 50.0%
!! TGCAGTGATGGTGGAGTTCT+TGG - Chr1:10805402-10805421 None:intergenic 50.0%
!! TTAGGTTGAACAGCTGAGGC+TGG + Chr1:10807332-10807351 MsG0180000764.01.T01:intron 50.0%
ACATCGCCGACACCGATGAA+TGG - Chr1:10802748-10802767 None:intergenic 55.0%
CCAAGGACCCGCTAAGATTG+TGG - Chr1:10804835-10804854 None:intergenic 55.0%
CTAATCGCGAGTCTGCCAGA+AGG + Chr1:10807138-10807157 MsG0180000764.01.T01:CDS 55.0%
CTTGTGAAGGCCACGTCATC+AGG + Chr1:10803583-10803602 MsG0180000764.01.T01:intron 55.0%
TCGCCTACAATCACCGTCCA+TGG + Chr1:10807981-10808000 MsG0180000764.01.T01:CDS 55.0%
TGGTGGAGTTCTTGGGAGTG+AGG - Chr1:10805394-10805413 None:intergenic 55.0%
! CCACAATCTTAGCGGGTCCT+TGG + Chr1:10804832-10804851 MsG0180000764.01.T01:intron 55.0%
! TTAGCGGGTCCTTGGGAAAG+AGG + Chr1:10804840-10804859 MsG0180000764.01.T01:intron 55.0%
!! GGTGTCGGCGATGTTTGCTC+TGG + Chr1:10802754-10802773 MsG0180000764.01.T01:CDS 60.0%
GCGGGTCCTTGGGAAAGAGG+TGG + Chr1:10804843-10804862 MsG0180000764.01.T01:intron 65.0%
GGTGGTCGGGGTTTGAACCC+CGG - Chr1:10803996-10804015 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 10802528 10808592 10802528 ID=MsG0180000764.01;Name=MsG0180000764.01
Chr1 mRNA 10802528 10808592 10802528 ID=MsG0180000764.01.T01;Parent=MsG0180000764.01;Name=MsG0180000764.01.T01;_AED=0.38;_eAED=0.38;_QI=52|0.8|0.83|1|1|1|6|453|333
Chr1 exon 10807846 10808592 10807846 ID=MsG0180000764.01.T01:exon:1090;Parent=MsG0180000764.01.T01
Chr1 exon 10807336 10807461 10807336 ID=MsG0180000764.01.T01:exon:1089;Parent=MsG0180000764.01.T01
Chr1 exon 10807130 10807205 10807130 ID=MsG0180000764.01.T01:exon:1088;Parent=MsG0180000764.01.T01
Chr1 exon 10806281 10806425 10806281 ID=MsG0180000764.01.T01:exon:1087;Parent=MsG0180000764.01.T01
Chr1 exon 10805326 10805455 10805326 ID=MsG0180000764.01.T01:exon:1086;Parent=MsG0180000764.01.T01
Chr1 exon 10802528 10802810 10802528 ID=MsG0180000764.01.T01:exon:1085;Parent=MsG0180000764.01.T01
Chr1 five_prime_UTR 10802528 10802579 10802528 ID=MsG0180000764.01.T01:five_prime_utr;Parent=MsG0180000764.01.T01
Chr1 CDS 10802580 10802810 10802580 ID=MsG0180000764.01.T01:cds;Parent=MsG0180000764.01.T01
Chr1 CDS 10805326 10805455 10805326 ID=MsG0180000764.01.T01:cds;Parent=MsG0180000764.01.T01
Chr1 CDS 10806281 10806425 10806281 ID=MsG0180000764.01.T01:cds;Parent=MsG0180000764.01.T01
Chr1 CDS 10807130 10807205 10807130 ID=MsG0180000764.01.T01:cds;Parent=MsG0180000764.01.T01
Chr1 CDS 10807336 10807461 10807336 ID=MsG0180000764.01.T01:cds;Parent=MsG0180000764.01.T01
Chr1 CDS 10807846 10808139 10807846 ID=MsG0180000764.01.T01:cds;Parent=MsG0180000764.01.T01
Chr1 three_prime_UTR 10808140 10808592 10808140 ID=MsG0180000764.01.T01:three_prime_utr;Parent=MsG0180000764.01.T01
Gene Sequence

>MsG0180000764.01.T01

ATGGAACCAAAATGGAGCACCATTCTGCCAGCAACCTCCATATTCTCCAGCTTCGATGACCTCAAATGGATCACAGCAGAATTTGATCATGAACTTTTCACGAGGCGGCCTGTTACCGTCGAAACAGCAATCGACGACAACGATGTAAAACCGTGTAAGATGGATCCATTCATCGGTGTCGGCGATGTTTGCTCTGGTAACATCGCCGACACCGCCGATTTTCATAATCTGGATGCCGTAACTTCATTTTCAACATGTGGTGAACCAACAAATAATACTCTTGTTTGCTCCCAAAACCTCACTCCCAAGAACTCCACCATCACTGCAACTATTGAGTCTCAATCATCCATTTATGCCACCGCTAATAAACCAAGCAGTAGAGAAAATCAAACCAAAGGAGTGACTACAACAACAAGTGGTTCCTCACGTGATCCATCTGATGAAGATGATGAAGCAGGTCCTTGTGAACAAAGTACAAACCCTGTTGATATGAAGCGTCTTAGAAGGAAGGTTTCTAATCGCGAGTCTGCCAGAAGGTCCAGAAGAAGAAAACAAGCACATTTGGCAGACCTTGAGGTTCAGGTTGAACAGCTGAGGCTGGAAAATGCAAGCCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGCGATGCTAACACTAACAACCGAGTGCTAAAATCCGATGTTGAAGCTTTAAGAGCTAAGGTGAAGTTAGCAGAGGATATGGTCTCTAGGGGTACTTTACCTACTTTTAACAACCAGCTTCTCCAAAATCAGAGTCAATTGAACACCACTCCGCCACAAATCAACACTAGTAATCTCCGTTGTATGGCGCATGTTTCGCCTACAATCACCGTCCATGGAAACGACGCTTCATATGGTGTTAGTGGACAGAATTCAGCTATTGGACTTGGAGATTTTGATATATCTTGCAGTCATGATTTCAACAATGGAGTTAATAGTGATGCTGTGAGCTCTTTGACTAGCTTATGGTCATAA
Protein sequence

>MsG0180000764.01.T01

MEPKWSTILPATSIFSSFDDLKWITAEFDHELFTRRPVTVETAIDDNDVKPCKMDPFIGVGDVCSGNIADTADFHNLDAVTSFSTCGEPTNNTLVCSQNLTPKNSTITATIESQSSIYATANKPSSRENQTKGVTTTTSGSSRDPSDEDDEAGPCEQSTNPVDMKRLRRKVSNRESARRSRRRKQAHLADLEVQVEQLRLENASLFKQLTDASQQFRDANTNNRVLKSDVEALRAKVKLAEDMVSRGTLPTFNNQLLQNQSQLNTTPPQINTSNLRCMAHVSPTITVHGNDASYGVSGQNSAIGLGDFDISCSHDFNNGVNSDAVSSLTSLWS*