AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020990.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020990.01.T01 MTR_4g063780 95.536 336 12 2 1 335 1 334 0.0 586
MsG0480020990.01.T01 MTR_2g096740 41.504 359 130 17 1 335 1 303 2.73e-63 203
MsG0480020990.01.T01 MTR_7g059400 43.465 329 136 10 1 311 1 297 1.20e-61 200
MsG0480020990.01.T01 MTR_2g096740 38.997 359 124 15 1 335 1 288 3.73e-57 187
MsG0480020990.01.T01 MTR_4g022370 38.968 349 154 12 1 316 1 323 1.52e-55 185
MsG0480020990.01.T01 MTR_7g024670 59.028 144 52 4 1 139 1 142 1.98e-46 161
MsG0480020990.01.T01 MTR_5g031440 87.500 56 7 0 70 125 38 93 1.35e-32 124
MsG0480020990.01.T01 MTR_3g077750 54.867 113 44 3 48 160 37 142 1.81e-32 124
MsG0480020990.01.T01 MTR_4g088580 42.197 173 64 5 76 221 56 219 3.00e-32 124
MsG0480020990.01.T01 MTR_2g093220 80.328 61 12 0 69 129 34 94 1.63e-31 120
MsG0480020990.01.T01 MTR_4g461080 66.667 78 25 1 50 127 5 81 1.84e-31 119
MsG0480020990.01.T01 MTR_8g479350 60.674 89 26 1 75 163 68 147 2.02e-31 121
MsG0480020990.01.T01 MTR_8g027295 57.732 97 39 1 62 158 11 105 1.16e-30 117
MsG0480020990.01.T01 MTR_8g068210 69.620 79 20 2 74 152 31 105 1.23e-30 119
MsG0480020990.01.T01 MTR_8g079060 54.717 106 32 3 54 159 17 106 8.04e-30 114
MsG0480020990.01.T01 MTR_3g091820 67.089 79 18 2 56 134 28 98 9.76e-30 115
MsG0480020990.01.T01 MTR_1g077600 60.000 80 30 1 52 129 18 97 3.08e-29 113
MsG0480020990.01.T01 MTR_1g077600 60.000 80 30 1 52 129 18 97 3.61e-29 114
MsG0480020990.01.T01 MTR_3g090430 63.514 74 27 0 56 129 32 105 1.04e-28 113
MsG0480020990.01.T01 MTR_8g015840 58.750 80 30 1 59 135 1 80 1.33e-28 110
MsG0480020990.01.T01 MTR_2g014060 67.606 71 22 1 57 126 6 76 2.20e-28 112
MsG0480020990.01.T01 MTR_4g109980 82.692 52 9 0 74 125 39 90 3.37e-28 112
MsG0480020990.01.T01 MTR_2g014170 88.000 50 6 0 74 123 44 93 5.76e-28 111
MsG0480020990.01.T01 MTR_1g056810 63.636 77 27 1 77 153 14 89 6.57e-28 110
MsG0480020990.01.T01 MTR_2g059540 84.000 50 8 0 74 123 30 79 9.08e-27 105
MsG0480020990.01.T01 MTR_4g089095 71.186 59 15 1 75 133 50 106 5.09e-25 102
MsG0480020990.01.T01 MTR_4g089095 71.186 59 15 1 75 133 16 72 6.16e-25 102
MsG0480020990.01.T01 MTR_2g013370 66.129 62 16 1 74 135 45 101 2.13e-24 100
MsG0480020990.01.T01 MTR_8g044220 66.102 59 20 0 71 129 114 172 2.91e-24 102
MsG0480020990.01.T01 MTR_2g016030 63.380 71 25 1 72 142 44 113 3.63e-24 97.1
MsG0480020990.01.T01 MTR_6g027450 63.333 60 22 0 68 127 82 141 7.54e-24 100
MsG0480020990.01.T01 MTR_6g012450 66.667 60 20 0 68 127 129 188 1.06e-23 101
MsG0480020990.01.T01 MTR_4g082060 58.571 70 26 1 58 127 108 174 1.75e-23 100
MsG0480020990.01.T01 MTR_7g010950 49.412 85 43 0 68 152 128 212 2.22e-23 100
MsG0480020990.01.T01 MTR_7g086780 60.000 70 25 2 60 129 86 152 2.28e-23 100
MsG0480020990.01.T01 MTR_3g435480 62.687 67 24 1 68 134 129 194 3.44e-23 100
MsG0480020990.01.T01 MTR_6g027460 61.667 60 23 0 68 127 89 148 4.67e-23 98.6
MsG0480020990.01.T01 MTR_5g041420 43.820 89 50 0 39 127 102 190 1.24e-21 94.0
MsG0480020990.01.T01 MTR_5g041530 69.091 55 16 1 77 131 142 195 1.64e-20 91.7
MsG0480020990.01.T01 MTR_5g041380 48.780 82 41 1 59 140 111 191 5.81e-20 90.1
MsG0480020990.01.T01 MTR_5g041400 50.725 69 34 0 59 127 103 171 1.25e-19 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020990.01.T01 AT3G55370 38.636 352 138 13 1 323 1 303 9.06e-52 174
MsG0480020990.01.T01 AT3G55370 42.322 267 104 8 1 250 1 234 1.74e-51 174
MsG0480020990.01.T01 AT1G07640 42.456 285 145 9 57 334 3 275 5.65e-50 168
MsG0480020990.01.T01 AT1G07640 42.254 284 147 8 57 334 59 331 2.43e-49 168
MsG0480020990.01.T01 AT1G07640 42.254 284 147 8 57 334 67 339 3.41e-49 168
MsG0480020990.01.T01 AT3G55370 39.936 313 118 11 32 323 85 348 5.10e-49 168
MsG0480020990.01.T01 AT2G37590 53.846 156 32 2 1 129 1 143 8.57e-47 161
MsG0480020990.01.T01 AT2G28810 37.815 357 170 15 1 331 1 331 4.10e-46 160
MsG0480020990.01.T01 AT5G02460 88.158 76 9 0 54 129 74 149 4.96e-44 156
MsG0480020990.01.T01 AT2G28810 40.283 283 135 11 57 331 58 314 7.88e-43 150
MsG0480020990.01.T01 AT5G60200 76.389 72 13 1 70 141 50 117 1.87e-34 127
MsG0480020990.01.T01 AT1G51700 58.889 90 29 1 70 159 28 109 1.20e-31 117
MsG0480020990.01.T01 AT5G60850 62.791 86 25 2 74 159 50 128 2.60e-31 120
MsG0480020990.01.T01 AT3G45610 53.409 88 39 1 70 155 35 122 3.05e-31 118
MsG0480020990.01.T01 AT4G38000 77.049 61 14 0 69 129 35 95 2.29e-30 116
MsG0480020990.01.T01 AT5G65590 81.034 58 11 0 75 132 41 98 4.67e-30 117
MsG0480020990.01.T01 AT3G21270 53.000 100 28 2 75 155 29 128 3.88e-29 111
MsG0480020990.01.T01 AT4G24060 50.000 112 56 0 69 180 47 158 1.96e-28 113
MsG0480020990.01.T01 AT1G28310 79.661 59 11 1 75 133 27 84 3.75e-28 111
MsG0480020990.01.T01 AT3G52440 70.588 68 16 1 77 144 27 90 4.15e-28 110
MsG0480020990.01.T01 AT3G52440 70.588 68 16 1 77 144 46 109 5.06e-28 110
MsG0480020990.01.T01 AT2G28510 73.846 65 13 1 74 138 47 107 5.38e-28 110
MsG0480020990.01.T01 AT1G28310 79.661 59 11 1 75 133 51 108 5.85e-28 111
MsG0480020990.01.T01 AT3G61850 58.889 90 29 2 71 156 58 143 2.25e-27 108
MsG0480020990.01.T01 AT3G61850 58.889 90 29 2 71 156 58 143 2.25e-27 108
MsG0480020990.01.T01 AT5G66940 50.000 100 36 2 56 144 2 98 2.39e-27 107
MsG0480020990.01.T01 AT3G61850 58.889 90 29 2 71 156 70 155 3.14e-27 108
MsG0480020990.01.T01 AT3G61850 58.889 90 29 2 71 156 58 143 3.16e-27 109
MsG0480020990.01.T01 AT1G21340 73.770 61 10 1 77 137 40 94 3.50e-27 107
MsG0480020990.01.T01 AT3G61850 58.889 90 29 2 71 156 70 155 3.86e-27 109
MsG0480020990.01.T01 AT4G21050 47.581 124 50 3 68 190 17 126 4.43e-27 106
MsG0480020990.01.T01 AT3G50410 70.690 58 17 0 75 132 30 87 1.44e-26 106
MsG0480020990.01.T01 AT2G46590 56.250 80 35 0 43 122 36 115 3.13e-26 107
MsG0480020990.01.T01 AT2G46590 56.250 80 35 0 43 122 48 127 3.53e-26 107
MsG0480020990.01.T01 AT4G00940 63.514 74 23 2 59 129 50 122 1.24e-25 104
MsG0480020990.01.T01 AT4G00940 63.514 74 23 2 59 129 50 122 1.24e-25 104
MsG0480020990.01.T01 AT4G00940 63.514 74 23 2 59 129 50 122 1.24e-25 104
MsG0480020990.01.T01 AT1G64620 66.176 68 23 0 56 123 30 97 4.25e-25 104
MsG0480020990.01.T01 AT1G47655 70.000 60 16 1 66 123 18 77 2.02e-24 99.4
MsG0480020990.01.T01 AT2G34140 58.442 77 28 2 53 129 39 111 3.78e-24 97.4
MsG0480020990.01.T01 AT1G29160 69.492 59 17 1 71 129 58 115 1.14e-23 96.3
MsG0480020990.01.T01 AT4G21040 56.250 80 30 1 77 156 27 101 3.51e-23 96.3
MsG0480020990.01.T01 AT5G39660 66.667 63 20 1 67 129 130 191 3.88e-23 100
MsG0480020990.01.T01 AT5G39660 66.667 63 20 1 67 129 130 191 3.88e-23 100
MsG0480020990.01.T01 AT5G39660 66.667 63 20 1 67 129 130 191 3.88e-23 100
MsG0480020990.01.T01 AT1G26790 54.412 68 31 0 60 127 96 163 4.08e-23 99.0
MsG0480020990.01.T01 AT5G62430 56.000 75 31 2 58 131 36 109 4.26e-23 97.8
MsG0480020990.01.T01 AT3G47500 65.000 60 21 0 68 127 103 162 8.46e-23 99.0
MsG0480020990.01.T01 AT1G69570 61.667 60 23 0 68 127 125 184 2.25e-22 97.1
MsG0480020990.01.T01 AT4G21080 63.492 63 18 1 77 139 27 84 7.83e-22 93.2
MsG0480020990.01.T01 AT5G62940 36.464 181 77 4 69 213 67 245 2.39e-19 88.2
MsG0480020990.01.T01 AT4G21030 54.098 61 25 1 68 128 17 74 2.07e-15 73.9

Find 116 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCATCTCTTATAAATT+TGG 0.183593 4:+51692766 MsG0480020990.01.T01:exon
GCAAGACATGTAGGCGTTAT+TGG 0.207030 4:+51692079 MsG0480020990.01.T01:CDS
AGTAATTTATGTACTATATA+TGG 0.208661 4:+51692949 MsG0480020990.01.T01:three_prime_UTR
GATGAGAAAATGAGGGAATA+AGG 0.213923 4:+51691394 MsG0480020990.01.T01:five_prime_UTR
GTTGTTGTTGATGTTGTTCT+TGG 0.217968 4:-51692371 None:intergenic
TCAAGAGCCACCGGTTAAAA+TGG 0.246428 4:+51692641 MsG0480020990.01.T01:CDS
TCTTGAGAGTTTGTTGAATT+AGG 0.247926 4:-51692189 None:intergenic
CCATTTGCTTGTTGATGATT+TGG 0.249048 4:-51691832 None:intergenic
ACCAACAACAATACTATTCT+TGG 0.250684 4:+51692721 MsG0480020990.01.T01:CDS
GTTTCTGCTTCTGCTGTTGC+TGG 0.257390 4:+51692453 MsG0480020990.01.T01:CDS
GATCATATGGGGTTTCAAAT+TGG 0.271163 4:+51692399 MsG0480020990.01.T01:CDS
TATTCTTGGAATGATTTATC+AGG 0.272738 4:+51692735 MsG0480020990.01.T01:CDS
TTTATAAAAGAAAACATAAA+AGG 0.276480 4:+51691558 MsG0480020990.01.T01:five_prime_UTR
TACTGGTGGCGGTGGTACTA+TGG 0.292815 4:+51691906 MsG0480020990.01.T01:CDS
TTTACCTGGTGGTGCCAATT+AGG 0.304320 4:-51691629 None:intergenic
CCTTCTCATCATGAACTAAT+TGG 0.327970 4:+51692240 MsG0480020990.01.T01:CDS
TTCATATCTTTGATCCATTC+CGG 0.333436 4:-51692789 None:intergenic
TGGATCAAAGATATGAAGTT+TGG 0.348175 4:+51692795 MsG0480020990.01.T01:three_prime_UTR
GTTATGTAGATCCTCCTAAT+TGG 0.350822 4:+51691615 MsG0480020990.01.T01:CDS
AACATTGAAGCTGCAGCATC+TGG 0.352153 4:+51692582 MsG0480020990.01.T01:CDS
TTCTCTTCTCTGTATTCCCT+TGG 0.355868 4:+51691497 MsG0480020990.01.T01:five_prime_UTR
AATTCCTAACCTACCCTTCA+TGG 0.365060 4:+51692281 MsG0480020990.01.T01:CDS
ACAACAACAACAAGATCATA+TGG 0.370266 4:+51692386 MsG0480020990.01.T01:CDS
TCTGCTGTTGCTGGAGGTGT+TGG 0.398368 4:+51692462 MsG0480020990.01.T01:CDS
TTTCAAATTGGTATTGGTAA+TGG 0.399190 4:+51692411 MsG0480020990.01.T01:CDS
TCCAAGAATAGTATTGTTGT+TGG 0.406762 4:-51692722 None:intergenic
ATGGGGTTTCAAATTGGTAT+TGG 0.408013 4:+51692405 MsG0480020990.01.T01:CDS
AATACAGAGAAGAGAAAGAA+AGG 0.409902 4:-51691490 None:intergenic
GTAATTTATGTACTATATAT+GGG 0.411722 4:+51692950 MsG0480020990.01.T01:three_prime_UTR
CTACGACACCCTCCACCAAC+TGG 0.417773 4:-51692129 None:intergenic
ATGAGAAAATGAGGGAATAA+GGG 0.423272 4:+51691395 MsG0480020990.01.T01:five_prime_UTR
GGACACTTTAGCGCTGGTTC+TGG 0.424523 4:-51691985 None:intergenic
TGAGAAGGGATTGCACTTGA+TGG 0.431346 4:-51692225 None:intergenic
CTGACGTTGTAATATCAATT+CGG 0.439770 4:+51693042 MsG0480020990.01.T01:three_prime_UTR
GCTCGATCAGCCATGGAGCC+TGG 0.444337 4:-51691940 None:intergenic
GTGTAAAGTAAGTAAACTTA+AGG 0.447478 4:-51693076 None:intergenic
CCTCAAGTGGGAGGTAGTAC+TGG 0.448394 4:+51691889 MsG0480020990.01.T01:CDS
CCAAATCATCAACAAGCAAA+TGG 0.450966 4:+51691832 MsG0480020990.01.T01:CDS
GATATGAAGTTTGGAACGAT+TGG 0.451871 4:+51692804 MsG0480020990.01.T01:three_prime_UTR
TTGATGGCTCTTTAGGGAGA+TGG 0.453212 4:-51691532 None:intergenic
GCTGCAGCATCTGGATTTGT+TGG 0.454209 4:+51692591 MsG0480020990.01.T01:CDS
AAACAAAATCAATTACTAGA+AGG 0.455741 4:-51692902 None:intergenic
TCTTATAAATTTGGCCGGAA+TGG 0.459361 4:+51692775 MsG0480020990.01.T01:exon
GATTCAAAAGTATTCAAGAA+AGG 0.460724 4:-51692516 None:intergenic
CTTAGAAATGTTCCAGTTGG+TGG 0.472325 4:+51692117 MsG0480020990.01.T01:CDS
CTCGATCAGACCAGGCTCCA+TGG 0.475078 4:+51691930 MsG0480020990.01.T01:CDS
CTATGTAGCTGGTTGTAGCT+AGG 0.480704 4:-51693098 None:intergenic
GAGATATAGCTTCAAACTCT+AGG 0.480948 4:+51692613 MsG0480020990.01.T01:CDS
CCTCCCACTTGAGGTGGTAA+AGG 0.483237 4:-51691880 None:intergenic
TTTAGCGCTGGTTCTGGTGG+TGG 0.483860 4:-51691979 None:intergenic
ATACAGAGAAGAGAAAGAAA+GGG 0.484195 4:-51691489 None:intergenic
GGTAGGTTAGGAATTGTTTG+TGG 0.484498 4:-51692273 None:intergenic
CAACAACAACAAGATCATAT+GGG 0.484986 4:+51692387 MsG0480020990.01.T01:CDS
AGCATTAAAGGAAGAGAGGA+GGG 0.487565 4:-51691460 None:intergenic
GAGGCCATGAAGGGTAGGTT+AGG 0.490552 4:-51692285 None:intergenic
AGAAATGTTCCAGTTGGTGG+AGG 0.497986 4:+51692120 MsG0480020990.01.T01:CDS
AAAGGAAGAGAGGAGGGAGG+AGG 0.506532 4:-51691454 None:intergenic
CCAATTAGTTCATGATGAGA+AGG 0.516486 4:-51692240 None:intergenic
CACTTTAGCGCTGGTTCTGG+TGG 0.522746 4:-51691982 None:intergenic
GAAGTAGCAAAATTTAGTGT+TGG 0.523027 4:-51692022 None:intergenic
TCCTCCTAATTGGCACCACC+AGG 0.528426 4:+51691625 MsG0480020990.01.T01:CDS
AAAGAGCATTAAAGGAAGAG+AGG 0.530419 4:-51691464 None:intergenic
ACTGGTGGCGGTGGTACTAT+GGG 0.530847 4:+51691907 MsG0480020990.01.T01:CDS
GGAAACGTTAACATGGGACT+TGG 0.531022 4:+51692336 MsG0480020990.01.T01:CDS
GAGAAGGGATTGCACTTGAT+GGG 0.532889 4:-51692224 None:intergenic
AGGAGGAAAGCAGCAATAAG+AGG 0.536872 4:-51691437 None:intergenic
TCATCTCTTATAAATTTGGC+CGG 0.539379 4:+51692770 MsG0480020990.01.T01:exon
AATCTATCAAGAACATCCCT+TGG 0.539894 4:+51692681 MsG0480020990.01.T01:CDS
CAACGAGGACACTTTAGCGC+TGG 0.540252 4:-51691991 None:intergenic
ACCTGGTGGTGCCAATTAGG+AGG 0.541280 4:-51691626 None:intergenic
TCTGCTTCTGCTGTTGCTGG+AGG 0.548891 4:+51692456 MsG0480020990.01.T01:CDS
GAGCATTAAAGGAAGAGAGG+AGG 0.549927 4:-51691461 None:intergenic
ATGGCTCTTTAGGGAGATGG+TGG 0.554378 4:-51691529 None:intergenic
AGATATAGCTTCAAACTCTA+GGG 0.556521 4:+51692614 MsG0480020990.01.T01:CDS
GGAGGTAGTACTGGTGGCGG+TGG 0.560481 4:+51691898 MsG0480020990.01.T01:CDS
ATTCTGCATCGAGGCCATGA+AGG 0.561082 4:-51692295 None:intergenic
AATCTGAGTCGTTATGTCGT+TGG 0.570962 4:+51692315 MsG0480020990.01.T01:CDS
CAATTAGTTCATGATGAGAA+GGG 0.573984 4:-51692239 None:intergenic
TGTCGTTGGAAACGTTAACA+TGG 0.575317 4:+51692329 MsG0480020990.01.T01:CDS
TCCACCTTTACCACCTCAAG+TGG 0.577272 4:+51691876 MsG0480020990.01.T01:CDS
ACTATGGGCTCGATCAGACC+AGG 0.580839 4:+51691922 MsG0480020990.01.T01:CDS
TTCTGCATCGAGGCCATGAA+GGG 0.581643 4:-51692294 None:intergenic
CCCACTTGAGGTGGTAAAGG+TGG 0.581750 4:-51691877 None:intergenic
ATTAAAGGAAGAGAGGAGGG+AGG 0.592350 4:-51691457 None:intergenic
GAAATGTTCCAGTTGGTGGA+GGG 0.594932 4:+51692121 MsG0480020990.01.T01:CDS
GCACTTAGAAATGTTCCAGT+TGG 0.600640 4:+51692114 MsG0480020990.01.T01:CDS
TATATTATTCAACTCAGTCA+TGG 0.602165 4:+51692852 MsG0480020990.01.T01:three_prime_UTR
AGAAGGGATTGCACTTGATG+GGG 0.604506 4:-51692223 None:intergenic
GTAGGCGTTATTGGACAAGA+GGG 0.605161 4:+51692088 MsG0480020990.01.T01:CDS
TAGGGCTAATCAAGAGCCAC+CGG 0.605644 4:+51692632 MsG0480020990.01.T01:CDS
GTCGTTGGAAACGTTAACAT+GGG 0.609381 4:+51692330 MsG0480020990.01.T01:CDS
GTCACTTCTGCAAGACATGT+AGG 0.611130 4:+51692070 MsG0480020990.01.T01:CDS
TGTAGGCGTTATTGGACAAG+AGG 0.616737 4:+51692087 MsG0480020990.01.T01:CDS
GCATCGAGGCCATGAAGGGT+AGG 0.623817 4:-51692290 None:intergenic
AATTGCTGCAAATTACGCCA+TGG 0.629104 4:-51692492 None:intergenic
TAAACGAGCTCGATCAGCCA+TGG 0.633447 4:-51691947 None:intergenic
CATGTCTTGCAGAAGTGACG+AGG 0.635723 4:-51692066 None:intergenic
GTGGGAGGTAGTACTGGTGG+CGG 0.638124 4:+51691895 MsG0480020990.01.T01:CDS
AACAACAACAAGATCATATG+GGG 0.646211 4:+51692388 MsG0480020990.01.T01:CDS
TATTATGTTCAGAGACACCA+AGG 0.647047 4:-51692698 None:intergenic
CCACCTTTACCACCTCAAGT+GGG 0.662217 4:+51691877 MsG0480020990.01.T01:CDS
CAAGTGGGAGGTAGTACTGG+TGG 0.664836 4:+51691892 MsG0480020990.01.T01:CDS
GTACTACCTCCCACTTGAGG+TGG 0.666584 4:-51691886 None:intergenic
TAGGCGTTATTGGACAAGAG+GGG 0.675252 4:+51692089 MsG0480020990.01.T01:CDS
AGGCGTTATTGGACAAGAGG+GGG 0.675862 4:+51692090 MsG0480020990.01.T01:CDS
ATGGTGGAGAATCAAACCAA+GGG 0.681127 4:-51691513 None:intergenic
CCAGTACTACCTCCCACTTG+AGG 0.681370 4:-51691889 None:intergenic
GATGGTGGAGAATCAAACCA+AGG 0.687483 4:-51691514 None:intergenic
CCTTTACCACCTCAAGTGGG+AGG 0.700568 4:+51691880 MsG0480020990.01.T01:CDS
GAGGTGTTGGAGTTGAACCA+TGG 0.701694 4:+51692475 MsG0480020990.01.T01:CDS
TGAGTTGAATAATATATGAG+TGG 0.703462 4:-51692845 None:intergenic
TTGAATAGAAGAGAAAACCA+TGG 0.707467 4:-51691591 None:intergenic
ATTATGTTCAGAGACACCAA+GGG 0.718424 4:-51692697 None:intergenic
AGAAGTGACGAGGTTGAGTG+AGG 0.724186 4:-51692056 None:intergenic
GTGTTGGTTGAATCGCAACG+AGG 0.733913 4:-51692006 None:intergenic
ACGACTCAGATTCTGCATCG+AGG 0.741695 4:-51692304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAAAAAATTATTGTGA+TGG - Chr4:51691769-51691788 None:intergenic 10.0%
!! TTTATAAAAGAAAACATAAA+AGG + Chr4:51691558-51691577 MsG0480020990.01.T01:five_prime_UTR 10.0%
!! AGTAATTTATGTACTATATA+TGG + Chr4:51692949-51692968 MsG0480020990.01.T01:three_prime_UTR 15.0%
!! ATGGAAAGAAATTAAAAAAA+GGG - Chr4:51691793-51691812 None:intergenic 15.0%
!! GTAATTTATGTACTATATAT+GGG + Chr4:51692950-51692969 MsG0480020990.01.T01:three_prime_UTR 15.0%
!!! GTTTATGTTTTTTTATTTCA+TGG + Chr4:51692921-51692940 MsG0480020990.01.T01:three_prime_UTR 15.0%
!!! TTTCTTTTATAAAGTTTTGA+TGG - Chr4:51691551-51691570 None:intergenic 15.0%
!! AAACAAAATCAATTACTAGA+AGG - Chr4:51692905-51692924 None:intergenic 20.0%
!! ATGAAAATTAAAACTTTACC+TGG - Chr4:51691646-51691665 None:intergenic 20.0%
!! GATGGAAAGAAATTAAAAAA+AGG - Chr4:51691794-51691813 None:intergenic 20.0%
!!! AATAATTCATACACTTTTCA+TGG + Chr4:51692552-51692571 MsG0480020990.01.T01:CDS 20.0%
!!! ATATTTTTTAGGGTTTTTAG+TGG - Chr4:51691359-51691378 None:intergenic 20.0%
!!! TTCACTTTCTTTTTTGAATT+TGG - Chr4:51691675-51691694 None:intergenic 20.0%
! AAAAAGAGATGAGAAAATGA+GGG + Chr4:51691387-51691406 MsG0480020990.01.T01:five_prime_UTR 25.0%
! AAAATTAAAACTTTACCTGG+TGG - Chr4:51691643-51691662 None:intergenic 25.0%
! ATATTCAAGAAGATGAAGTA+AGG - Chr4:51691733-51691752 None:intergenic 25.0%
! CTACTCATCTCTTATAAATT+TGG + Chr4:51692766-51692785 MsG0480020990.01.T01:exon 25.0%
! GTGTAAAGTAAGTAAACTTA+AGG - Chr4:51693079-51693098 None:intergenic 25.0%
! TATATTATTCAACTCAGTCA+TGG + Chr4:51692852-51692871 MsG0480020990.01.T01:three_prime_UTR 25.0%
! TATTCTTGGAATGATTTATC+AGG + Chr4:51692735-51692754 MsG0480020990.01.T01:CDS 25.0%
!! TAAAAGGATTTTCAATACCA+TGG + Chr4:51691574-51691593 MsG0480020990.01.T01:exon 25.0%
!! TGAGTTGAATAATATATGAG+TGG - Chr4:51692848-51692867 None:intergenic 25.0%
!! TTGAATTAGGAGATTTTGAA+CGG - Chr4:51692179-51692198 None:intergenic 25.0%
!!! GATTCAAAAGTATTCAAGAA+AGG - Chr4:51692519-51692538 None:intergenic 25.0%
!!! TTTCAAATTGGTATTGGTAA+TGG + Chr4:51692411-51692430 MsG0480020990.01.T01:CDS 25.0%
AACAACAACAAGATCATATG+GGG + Chr4:51692388-51692407 MsG0480020990.01.T01:CDS 30.0%
AATACAGAGAAGAGAAAGAA+AGG - Chr4:51691493-51691512 None:intergenic 30.0%
ACAACAACAACAAGATCATA+TGG + Chr4:51692386-51692405 MsG0480020990.01.T01:CDS 30.0%
ACCAACAACAATACTATTCT+TGG + Chr4:51692721-51692740 MsG0480020990.01.T01:CDS 30.0%
AGATATAGCTTCAAACTCTA+GGG + Chr4:51692614-51692633 MsG0480020990.01.T01:CDS 30.0%
ATACAGAGAAGAGAAAGAAA+GGG - Chr4:51691492-51691511 None:intergenic 30.0%
ATGAGAAAATGAGGGAATAA+GGG + Chr4:51691395-51691414 MsG0480020990.01.T01:five_prime_UTR 30.0%
CAAAAAGAGATGAGAAAATG+AGG + Chr4:51691386-51691405 MsG0480020990.01.T01:five_prime_UTR 30.0%
CAACAACAACAAGATCATAT+GGG + Chr4:51692387-51692406 MsG0480020990.01.T01:CDS 30.0%
CAATTAGTTCATGATGAGAA+GGG - Chr4:51692242-51692261 None:intergenic 30.0%
CTGACGTTGTAATATCAATT+CGG + Chr4:51693042-51693061 MsG0480020990.01.T01:three_prime_UTR 30.0%
GAAGTAGCAAAATTTAGTGT+TGG - Chr4:51692025-51692044 None:intergenic 30.0%
TCATCTCTTATAAATTTGGC+CGG + Chr4:51692770-51692789 MsG0480020990.01.T01:exon 30.0%
TCCAAGAATAGTATTGTTGT+TGG - Chr4:51692725-51692744 None:intergenic 30.0%
TGGATCAAAGATATGAAGTT+TGG + Chr4:51692795-51692814 MsG0480020990.01.T01:three_prime_UTR 30.0%
TTCATATCTTTGATCCATTC+CGG - Chr4:51692792-51692811 None:intergenic 30.0%
TTGAATAGAAGAGAAAACCA+TGG - Chr4:51691594-51691613 None:intergenic 30.0%
! ATGGTTTTCTCTTCTATTCA+AGG + Chr4:51691593-51691612 MsG0480020990.01.T01:CDS 30.0%
!! AAAGGGAAAAAGAGCATTAA+AGG - Chr4:51691475-51691494 None:intergenic 30.0%
!! AAAGTTTTGATGGCTCTTTA+GGG - Chr4:51691541-51691560 None:intergenic 30.0%
!! CGATTTTCTTCCATTTTAAC+CGG - Chr4:51692654-51692673 None:intergenic 30.0%
!! TAAAGTTTTGATGGCTCTTT+AGG - Chr4:51691542-51691561 None:intergenic 30.0%
!! TCTTGAGAGTTTGTTGAATT+AGG - Chr4:51692192-51692211 None:intergenic 30.0%
!!! TTTTTTAGGGTTTTTAGTGG+AGG - Chr4:51691356-51691375 None:intergenic 30.0%
AATCTATCAAGAACATCCCT+TGG + Chr4:51692681-51692700 MsG0480020990.01.T01:CDS 35.0%
ATGGGGTTTCAAATTGGTAT+TGG + Chr4:51692405-51692424 MsG0480020990.01.T01:CDS 35.0%
ATTATGTTCAGAGACACCAA+GGG - Chr4:51692700-51692719 None:intergenic 35.0%
CCAAATCATCAACAAGCAAA+TGG + Chr4:51691832-51691851 MsG0480020990.01.T01:CDS 35.0%
CCAATTAGTTCATGATGAGA+AGG - Chr4:51692243-51692262 None:intergenic 35.0%
CCTTCTCATCATGAACTAAT+TGG + Chr4:51692240-51692259 MsG0480020990.01.T01:CDS 35.0%
GAGATATAGCTTCAAACTCT+AGG + Chr4:51692613-51692632 MsG0480020990.01.T01:CDS 35.0%
GATCATATGGGGTTTCAAAT+TGG + Chr4:51692399-51692418 MsG0480020990.01.T01:CDS 35.0%
GATGAGAAAATGAGGGAATA+AGG + Chr4:51691394-51691413 MsG0480020990.01.T01:five_prime_UTR 35.0%
GTTATGTAGATCCTCCTAAT+TGG + Chr4:51691615-51691634 MsG0480020990.01.T01:CDS 35.0%
TATTATGTTCAGAGACACCA+AGG - Chr4:51692701-51692720 None:intergenic 35.0%
TCTTATAAATTTGGCCGGAA+TGG + Chr4:51692775-51692794 MsG0480020990.01.T01:exon 35.0%
TTGCTGCAGGTTAAAATAGA+TGG - Chr4:51691812-51691831 None:intergenic 35.0%
! ACTTTTGAATCAAACTCTGC+TGG + Chr4:51692528-51692547 MsG0480020990.01.T01:CDS 35.0%
! GATATGAAGTTTGGAACGAT+TGG + Chr4:51692804-51692823 MsG0480020990.01.T01:three_prime_UTR 35.0%
! GTTGTTGTTGATGTTGTTCT+TGG - Chr4:51692374-51692393 None:intergenic 35.0%
!! AAAGAGCATTAAAGGAAGAG+AGG - Chr4:51691467-51691486 None:intergenic 35.0%
!! CCATTTGCTTGTTGATGATT+TGG - Chr4:51691835-51691854 None:intergenic 35.0%
!! TTTTCTTCCATTTTAACCGG+TGG - Chr4:51692651-51692670 None:intergenic 35.0%
AATCTGAGTCGTTATGTCGT+TGG + Chr4:51692315-51692334 MsG0480020990.01.T01:CDS 40.0%
AATTCCTAACCTACCCTTCA+TGG + Chr4:51692281-51692300 MsG0480020990.01.T01:CDS 40.0%
AATTGCTGCAAATTACGCCA+TGG - Chr4:51692495-51692514 None:intergenic 40.0%
AGCATTAAAGGAAGAGAGGA+GGG - Chr4:51691463-51691482 None:intergenic 40.0%
CTTAGAAATGTTCCAGTTGG+TGG + Chr4:51692117-51692136 MsG0480020990.01.T01:CDS 40.0%
GCACTTAGAAATGTTCCAGT+TGG + Chr4:51692114-51692133 MsG0480020990.01.T01:CDS 40.0%
GGTAGGTTAGGAATTGTTTG+TGG - Chr4:51692276-51692295 None:intergenic 40.0%
GTCGTTGGAAACGTTAACAT+GGG + Chr4:51692330-51692349 MsG0480020990.01.T01:CDS 40.0%
TGTCGTTGGAAACGTTAACA+TGG + Chr4:51692329-51692348 MsG0480020990.01.T01:CDS 40.0%
TTCTCTTCTCTGTATTCCCT+TGG + Chr4:51691497-51691516 MsG0480020990.01.T01:five_prime_UTR 40.0%
! ATGGTGGAGAATCAAACCAA+GGG - Chr4:51691516-51691535 None:intergenic 40.0%
AACATTGAAGCTGCAGCATC+TGG + Chr4:51692582-51692601 MsG0480020990.01.T01:CDS 45.0%
AGAAGGGATTGCACTTGATG+GGG - Chr4:51692226-51692245 None:intergenic 45.0%
AGGAGGAAAGCAGCAATAAG+AGG - Chr4:51691440-51691459 None:intergenic 45.0%
ATTAAAGGAAGAGAGGAGGG+AGG - Chr4:51691460-51691479 None:intergenic 45.0%
GAGAAGGGATTGCACTTGAT+GGG - Chr4:51692227-51692246 None:intergenic 45.0%
GAGCATTAAAGGAAGAGAGG+AGG - Chr4:51691464-51691483 None:intergenic 45.0%
GCAAGACATGTAGGCGTTAT+TGG + Chr4:51692079-51692098 MsG0480020990.01.T01:CDS 45.0%
GGAAACGTTAACATGGGACT+TGG + Chr4:51692336-51692355 MsG0480020990.01.T01:CDS 45.0%
GTAGGCGTTATTGGACAAGA+GGG + Chr4:51692088-51692107 MsG0480020990.01.T01:CDS 45.0%
GTCACTTCTGCAAGACATGT+AGG + Chr4:51692070-51692089 MsG0480020990.01.T01:CDS 45.0%
TAGGCGTTATTGGACAAGAG+GGG + Chr4:51692089-51692108 MsG0480020990.01.T01:CDS 45.0%
TGAGAAGGGATTGCACTTGA+TGG - Chr4:51692228-51692247 None:intergenic 45.0%
TGTAGGCGTTATTGGACAAG+AGG + Chr4:51692087-51692106 MsG0480020990.01.T01:CDS 45.0%
! TCAAGAGCCACCGGTTAAAA+TGG + Chr4:51692641-51692660 MsG0480020990.01.T01:CDS 45.0%
! TTGATGGCTCTTTAGGGAGA+TGG - Chr4:51691535-51691554 None:intergenic 45.0%
! TTTACCTGGTGGTGCCAATT+AGG - Chr4:51691632-51691651 None:intergenic 45.0%
!! AGAAATGTTCCAGTTGGTGG+AGG + Chr4:51692120-51692139 MsG0480020990.01.T01:CDS 45.0%
!! GAAATGTTCCAGTTGGTGGA+GGG + Chr4:51692121-51692140 MsG0480020990.01.T01:CDS 45.0%
!! GATGGTGGAGAATCAAACCA+AGG - Chr4:51691517-51691536 None:intergenic 45.0%
!! GTTGATGATTTGGTTGCTGC+AGG - Chr4:51691825-51691844 None:intergenic 45.0%
!!! TTGTTTTATTATATTTTTTA+GGG - Chr4:51691369-51691388 None:intergenic 5.0%
!!! TTTGTTTTATTATATTTTTT+AGG - Chr4:51691370-51691389 None:intergenic 5.0%
ACGACTCAGATTCTGCATCG+AGG - Chr4:51692307-51692326 None:intergenic 50.0%
AGAAGTGACGAGGTTGAGTG+AGG - Chr4:51692059-51692078 None:intergenic 50.0%
AGGCGTTATTGGACAAGAGG+GGG + Chr4:51692090-51692109 MsG0480020990.01.T01:CDS 50.0%
ATTCTGCATCGAGGCCATGA+AGG - Chr4:51692298-51692317 None:intergenic 50.0%
CATGTCTTGCAGAAGTGACG+AGG - Chr4:51692069-51692088 None:intergenic 50.0%
CCACCTTTACCACCTCAAGT+GGG + Chr4:51691877-51691896 MsG0480020990.01.T01:CDS 50.0%
GCTGCAGCATCTGGATTTGT+TGG + Chr4:51692591-51692610 MsG0480020990.01.T01:CDS 50.0%
GTTTCTGCTTCTGCTGTTGC+TGG + Chr4:51692453-51692472 MsG0480020990.01.T01:CDS 50.0%
TAAACGAGCTCGATCAGCCA+TGG - Chr4:51691950-51691969 None:intergenic 50.0%
TACACCTAGCTACAACCAGC+AGG + Chr4:51693094-51693113 MsG0480020990.01.T01:three_prime_UTR 50.0%
TAGGGCTAATCAAGAGCCAC+CGG + Chr4:51692632-51692651 MsG0480020990.01.T01:CDS 50.0%
TCCACCTTTACCACCTCAAG+TGG + Chr4:51691876-51691895 MsG0480020990.01.T01:CDS 50.0%
TTCTGCATCGAGGCCATGAA+GGG - Chr4:51692297-51692316 None:intergenic 50.0%
! ATGGCTCTTTAGGGAGATGG+TGG - Chr4:51691532-51691551 None:intergenic 50.0%
!! GAGGTGTTGGAGTTGAACCA+TGG + Chr4:51692475-51692494 MsG0480020990.01.T01:CDS 50.0%
!! GTGTTGGTTGAATCGCAACG+AGG - Chr4:51692009-51692028 None:intergenic 50.0%
AAAGGAAGAGAGGAGGGAGG+AGG - Chr4:51691457-51691476 None:intergenic 55.0%
ACTATGGGCTCGATCAGACC+AGG + Chr4:51691922-51691941 MsG0480020990.01.T01:CDS 55.0%
CAACGAGGACACTTTAGCGC+TGG - Chr4:51691994-51692013 None:intergenic 55.0%
CCAGTACTACCTCCCACTTG+AGG - Chr4:51691892-51691911 None:intergenic 55.0%
CCCACTTGAGGTGGTAAAGG+TGG - Chr4:51691880-51691899 None:intergenic 55.0%
CCTCAAGTGGGAGGTAGTAC+TGG + Chr4:51691889-51691908 MsG0480020990.01.T01:CDS 55.0%
CCTCCCACTTGAGGTGGTAA+AGG - Chr4:51691883-51691902 None:intergenic 55.0%
CCTTTACCACCTCAAGTGGG+AGG + Chr4:51691880-51691899 MsG0480020990.01.T01:CDS 55.0%
GAGGCCATGAAGGGTAGGTT+AGG - Chr4:51692288-51692307 None:intergenic 55.0%
GTACTACCTCCCACTTGAGG+TGG - Chr4:51691889-51691908 None:intergenic 55.0%
TCCTCCTAATTGGCACCACC+AGG + Chr4:51691625-51691644 MsG0480020990.01.T01:CDS 55.0%
TCTGCTTCTGCTGTTGCTGG+AGG + Chr4:51692456-51692475 MsG0480020990.01.T01:CDS 55.0%
! ACCTGGTGGTGCCAATTAGG+AGG - Chr4:51691629-51691648 None:intergenic 55.0%
! CAAGTGGGAGGTAGTACTGG+TGG + Chr4:51691892-51691911 MsG0480020990.01.T01:CDS 55.0%
! TCTGCTGTTGCTGGAGGTGT+TGG + Chr4:51692462-51692481 MsG0480020990.01.T01:CDS 55.0%
!! ACTGGTGGCGGTGGTACTAT+GGG + Chr4:51691907-51691926 MsG0480020990.01.T01:CDS 55.0%
!! CACTTTAGCGCTGGTTCTGG+TGG - Chr4:51691985-51692004 None:intergenic 55.0%
!! GGACACTTTAGCGCTGGTTC+TGG - Chr4:51691988-51692007 None:intergenic 55.0%
!! TACTGGTGGCGGTGGTACTA+TGG + Chr4:51691906-51691925 MsG0480020990.01.T01:CDS 55.0%
!! TTTAGCGCTGGTTCTGGTGG+TGG - Chr4:51691982-51692001 None:intergenic 55.0%
CTACGACACCCTCCACCAAC+TGG - Chr4:51692132-51692151 None:intergenic 60.0%
CTCGATCAGACCAGGCTCCA+TGG + Chr4:51691930-51691949 MsG0480020990.01.T01:CDS 60.0%
GCATCGAGGCCATGAAGGGT+AGG - Chr4:51692293-51692312 None:intergenic 60.0%
!! GTGGGAGGTAGTACTGGTGG+CGG + Chr4:51691895-51691914 MsG0480020990.01.T01:CDS 60.0%
GCTCGATCAGCCATGGAGCC+TGG - Chr4:51691943-51691962 None:intergenic 65.0%
!! GGAGGTAGTACTGGTGGCGG+TGG + Chr4:51691898-51691917 MsG0480020990.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 51691339 51693113 51691339 ID=MsG0480020990.01;Name=MsG0480020990.01
Chr4 mRNA 51691339 51693113 51691339 ID=MsG0480020990.01.T01;Parent=MsG0480020990.01;Name=MsG0480020990.01.T01;_AED=0.32;_eAED=0.32;_QI=254|1|1|1|1|1|2|331|335
Chr4 exon 51691339 51691646 51691339 ID=MsG0480020990.01.T01:exon:28437;Parent=MsG0480020990.01.T01
Chr4 exon 51691829 51693113 51691829 ID=MsG0480020990.01.T01:exon:28438;Parent=MsG0480020990.01.T01
Chr4 five_prime_UTR 51691339 51691592 51691339 ID=MsG0480020990.01.T01:five_prime_utr;Parent=MsG0480020990.01.T01
Chr4 CDS 51691593 51691646 51691593 ID=MsG0480020990.01.T01:cds;Parent=MsG0480020990.01.T01
Chr4 CDS 51691829 51692782 51691829 ID=MsG0480020990.01.T01:cds;Parent=MsG0480020990.01.T01
Chr4 three_prime_UTR 51692783 51693113 51692783 ID=MsG0480020990.01.T01:three_prime_utr;Parent=MsG0480020990.01.T01
Gene Sequence

>MsG0480020990.01.T01

ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCTCCTAATTGGCACCACCAGCAACCAAATCATCAACAAGCAAATGGAAGCAATAACACTCAACTTCTTCCACCTTTACCACCTCAAGTGGGAGGTAGTACTGGTGGCGGTGGTACTATGGGCTCGATCAGACCAGGCTCCATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCAGAACCAGCGCTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCAGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAAAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAACTCTCAAGAAAAACAAACTTCCCCATCAAGTGCAATCCCTTCTCATCATGAACTAATTGGTCATCAGTTACCACAAACAATTCCTAACCTACCCTTCATGGCCTCGATGCAGAATCTGAGTCGTTATGTCGTTGGAAACGTTAACATGGGACTTGGTTTGCGTGAGATCCAAGAACAACATCAACAACAACAACAAGATCATATGGGGTTTCAAATTGGTATTGGTAATGGTAACTCAACTTCTGTTTCTGTTTCTGCTTCTGCTGTTGCTGGAGGTGTTGGAGTTGAACCATGGCGTAATTTGCAGCAATTTCCTTTCTTGAATACTTTTGAATCAAACTCTGCTGGAAATAATTCATACACTTTTCATGGAGAAAGTAACATTGAAGCTGCAGCATCTGGATTTGTTGGAGATATAGCTTCAAACTCTAGGGCTAATCAAGAGCCACCGGTTAAAATGGAAGAAAATCGAGCTTTAAATCTATCAAGAACATCCCTTGGTGTCTCTGAACATAATAACCAACAACAATACTATTCTTGGAATGATTTATCAGGCTCTTCAACTACTCATCTCTTATAA

Protein sequence

>MsG0480020990.01.T01

MVFSSIQGYVDPPNWHHQQPNHQQANGSNNTQLLPPLPPQVGGSTGGGGTMGSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSQEKQTSPSSAIPSHHELIGHQLPQTIPNLPFMASMQNLSRYVVGNVNMGLGLREIQEQHQQQQQDHMGFQIGIGNGNSTSVSVSASAVAGGVGVEPWRNLQQFPFLNTFESNSAGNNSYTFHGESNIEAAASGFVGDIASNSRANQEPPVKMEENRALNLSRTSLGVSEHNNQQQYYSWNDLSGSSTTHLL*