Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000869.01.T01 | XP_003588379.2 | 77.815 | 595 | 58 | 8 | 1 | 528 | 1 | 588 | 0 | 895 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000869.01.T01 | Q9FFN2 | 44.14 | 401 | 205 | 7 | 130 | 523 | 123 | 511 | 1.05E-107 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000869.01.T01 | G7IB43 | 77.815 | 595 | 58 | 8 | 1 | 528 | 1 | 588 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000869.01 | MsG0180002322.01 | 0.918660 | 1.184488e-86 | 3.648442e-82 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000869.01.T01 | MTR_1g006600 | 77.815 | 595 | 58 | 8 | 1 | 528 | 1 | 588 | 0.0 | 895 |
| MsG0180000869.01.T01 | MTR_3g110198 | 61.102 | 599 | 158 | 7 | 1 | 528 | 1 | 595 | 0.0 | 703 |
| MsG0180000869.01.T01 | MTR_7g103150 | 62.782 | 532 | 148 | 7 | 1 | 528 | 1 | 486 | 0.0 | 652 |
| MsG0180000869.01.T01 | MTR_8g102840 | 67.460 | 378 | 122 | 1 | 149 | 525 | 231 | 608 | 0.0 | 563 |
| MsG0180000869.01.T01 | MTR_3g110200 | 65.426 | 376 | 130 | 0 | 149 | 524 | 213 | 588 | 0.0 | 559 |
| MsG0180000869.01.T01 | MTR_1g090733 | 64.402 | 368 | 125 | 2 | 157 | 523 | 182 | 544 | 3.48e-177 | 510 |
| MsG0180000869.01.T01 | MTR_4g100730 | 48.393 | 529 | 238 | 10 | 10 | 523 | 24 | 532 | 1.96e-164 | 477 |
| MsG0180000869.01.T01 | MTR_8g102840 | 65.636 | 291 | 99 | 1 | 149 | 438 | 231 | 521 | 1.91e-141 | 419 |
| MsG0180000869.01.T01 | MTR_7g103260 | 45.408 | 392 | 200 | 5 | 142 | 523 | 6 | 393 | 2.57e-117 | 352 |
| MsG0180000869.01.T01 | MTR_3g097310 | 44.591 | 379 | 195 | 4 | 156 | 523 | 113 | 487 | 3.58e-114 | 347 |
| MsG0180000869.01.T01 | MTR_7g103270 | 46.133 | 375 | 191 | 4 | 156 | 523 | 24 | 394 | 6.20e-114 | 343 |
| MsG0180000869.01.T01 | MTR_1g061760 | 45.576 | 373 | 189 | 7 | 160 | 523 | 113 | 480 | 3.81e-108 | 332 |
| MsG0180000869.01.T01 | MTR_3g081240 | 45.170 | 383 | 191 | 4 | 156 | 523 | 64 | 442 | 1.25e-106 | 326 |
| MsG0180000869.01.T01 | MTR_3g080690 | 44.882 | 381 | 193 | 4 | 156 | 523 | 64 | 440 | 9.52e-106 | 324 |
| MsG0180000869.01.T01 | MTR_3g106690 | 45.455 | 341 | 178 | 4 | 188 | 523 | 50 | 387 | 7.49e-97 | 299 |
| MsG0180000869.01.T01 | MTR_4g115540 | 41.039 | 385 | 206 | 6 | 156 | 523 | 240 | 620 | 7.09e-91 | 291 |
| MsG0180000869.01.T01 | MTR_4g115460 | 41.344 | 387 | 200 | 7 | 156 | 523 | 80 | 458 | 1.29e-89 | 283 |
| MsG0180000869.01.T01 | MTR_4g115530 | 37.984 | 387 | 214 | 10 | 156 | 523 | 7 | 386 | 6.11e-80 | 256 |
| MsG0180000869.01.T01 | MTR_4g115530 | 39.823 | 339 | 185 | 8 | 197 | 523 | 1 | 332 | 1.13e-76 | 245 |
| MsG0180000869.01.T01 | MTR_5g031480 | 35.838 | 346 | 205 | 9 | 180 | 519 | 73 | 407 | 1.43e-73 | 239 |
| MsG0180000869.01.T01 | MTR_5g049790 | 35.362 | 345 | 192 | 11 | 180 | 519 | 109 | 427 | 1.04e-67 | 225 |
| MsG0180000869.01.T01 | MTR_4g115540 | 39.394 | 297 | 159 | 6 | 156 | 435 | 240 | 532 | 4.64e-61 | 210 |
| MsG0180000869.01.T01 | MTR_7g085840 | 35.838 | 346 | 178 | 13 | 197 | 522 | 1 | 322 | 8.75e-57 | 193 |
| MsG0180000869.01.T01 | MTR_5g031480 | 34.944 | 269 | 158 | 9 | 180 | 442 | 73 | 330 | 1.19e-47 | 169 |
| MsG0180000869.01.T01 | MTR_5g031480 | 34.701 | 268 | 158 | 9 | 180 | 441 | 73 | 329 | 4.06e-47 | 167 |
| MsG0180000869.01.T01 | MTR_5g049790 | 32.353 | 272 | 157 | 11 | 131 | 395 | 84 | 335 | 2.63e-36 | 138 |
| MsG0180000869.01.T01 | MTR_5g049790 | 34.842 | 221 | 128 | 8 | 180 | 395 | 109 | 318 | 1.33e-35 | 135 |
| MsG0180000869.01.T01 | MTR_8g096160 | 28.371 | 356 | 198 | 14 | 200 | 518 | 49 | 384 | 5.55e-25 | 107 |
| MsG0180000869.01.T01 | MTR_8g096140 | 28.371 | 356 | 198 | 14 | 200 | 518 | 49 | 384 | 3.21e-24 | 105 |
| MsG0180000869.01.T01 | MTR_7g087100 | 27.609 | 297 | 179 | 10 | 242 | 518 | 190 | 470 | 3.75e-19 | 90.9 |
| MsG0180000869.01.T01 | MTR_3g037720 | 25.939 | 293 | 192 | 7 | 241 | 518 | 188 | 470 | 1.94e-17 | 85.5 |
| MsG0180000869.01.T01 | MTR_4g057500 | 26.394 | 269 | 153 | 8 | 282 | 518 | 189 | 444 | 2.38e-17 | 85.1 |
| MsG0180000869.01.T01 | MTR_2g084245 | 26.667 | 225 | 124 | 6 | 282 | 477 | 171 | 383 | 7.04e-17 | 83.6 |
| MsG0180000869.01.T01 | MTR_6g027310 | 25.338 | 296 | 189 | 8 | 241 | 518 | 184 | 465 | 7.11e-17 | 84.0 |
| MsG0180000869.01.T01 | MTR_4g084200 | 25.000 | 304 | 176 | 10 | 243 | 519 | 163 | 441 | 1.02e-14 | 77.0 |
| MsG0180000869.01.T01 | MTR_3g085480 | 23.256 | 301 | 187 | 6 | 243 | 518 | 119 | 400 | 1.35e-14 | 76.3 |
| MsG0180000869.01.T01 | MTR_4g084200 | 25.101 | 247 | 143 | 7 | 243 | 465 | 163 | 391 | 2.05e-13 | 72.8 |
| MsG0180000869.01.T01 | MTR_4g084200 | 25.911 | 247 | 141 | 8 | 243 | 465 | 163 | 391 | 2.13e-13 | 72.8 |
| MsG0180000869.01.T01 | MTR_1g097090 | 26.506 | 249 | 145 | 10 | 280 | 502 | 187 | 423 | 1.27e-12 | 70.5 |
| MsG0180000869.01.T01 | MTR_1g097090 | 26.506 | 249 | 145 | 10 | 280 | 502 | 187 | 423 | 1.30e-12 | 70.5 |
| MsG0180000869.01.T01 | MTR_8g080490 | 22.630 | 327 | 209 | 11 | 219 | 518 | 89 | 398 | 1.35e-12 | 70.1 |
| MsG0180000869.01.T01 | MTR_4g077920 | 26.838 | 272 | 174 | 10 | 245 | 502 | 184 | 444 | 1.92e-12 | 70.1 |
| MsG0180000869.01.T01 | MTR_4g077920 | 26.838 | 272 | 174 | 10 | 245 | 502 | 184 | 444 | 2.64e-12 | 69.3 |
| MsG0180000869.01.T01 | MTR_1g029350 | 25.749 | 334 | 201 | 14 | 195 | 496 | 68 | 386 | 3.92e-12 | 68.9 |
| MsG0180000869.01.T01 | MTR_4g077920 | 27.273 | 242 | 156 | 8 | 278 | 502 | 148 | 386 | 1.06e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000869.01.T01 | AT5G25820 | 71.240 | 379 | 106 | 3 | 149 | 524 | 272 | 650 | 0.0 | 590 |
| MsG0180000869.01.T01 | AT5G25820 | 32.759 | 116 | 68 | 3 | 8 | 115 | 8 | 121 | 7.38e-11 | 65.5 |
| MsG0180000869.01.T01 | AT4G32790 | 53.671 | 572 | 193 | 11 | 15 | 524 | 30 | 591 | 0.0 | 589 |
| MsG0180000869.01.T01 | AT4G32790 | 53.671 | 572 | 193 | 11 | 15 | 524 | 30 | 591 | 0.0 | 589 |
| MsG0180000869.01.T01 | AT4G32790 | 53.671 | 572 | 193 | 11 | 15 | 524 | 30 | 591 | 0.0 | 589 |
| MsG0180000869.01.T01 | AT5G19670 | 68.338 | 379 | 119 | 1 | 149 | 526 | 229 | 607 | 0.0 | 573 |
| MsG0180000869.01.T01 | AT5G19670 | 68.338 | 379 | 119 | 1 | 149 | 526 | 229 | 607 | 0.0 | 573 |
| MsG0180000869.01.T01 | AT5G11610 | 62.730 | 381 | 134 | 4 | 150 | 526 | 169 | 545 | 9.68e-179 | 514 |
| MsG0180000869.01.T01 | AT5G37000 | 61.968 | 376 | 141 | 2 | 149 | 523 | 174 | 548 | 1.89e-174 | 503 |
| MsG0180000869.01.T01 | AT4G16745 | 59.459 | 370 | 144 | 4 | 158 | 521 | 157 | 526 | 8.30e-160 | 466 |
| MsG0180000869.01.T01 | AT4G16745 | 58.056 | 360 | 145 | 4 | 158 | 511 | 157 | 516 | 2.77e-148 | 438 |
| MsG0180000869.01.T01 | AT5G11610 | 59.286 | 280 | 107 | 3 | 150 | 426 | 169 | 444 | 7.23e-119 | 358 |
| MsG0180000869.01.T01 | AT5G03795 | 44.140 | 401 | 205 | 7 | 130 | 523 | 123 | 511 | 1.07e-108 | 334 |
| MsG0180000869.01.T01 | AT5G25310 | 43.970 | 398 | 204 | 9 | 139 | 523 | 84 | 475 | 5.34e-100 | 310 |
| MsG0180000869.01.T01 | AT3G07620 | 43.117 | 385 | 201 | 5 | 153 | 523 | 74 | 454 | 6.64e-98 | 304 |
| MsG0180000869.01.T01 | AT5G20260 | 38.391 | 435 | 250 | 8 | 102 | 523 | 32 | 461 | 1.57e-92 | 290 |
| MsG0180000869.01.T01 | AT5G20260 | 42.941 | 340 | 184 | 5 | 190 | 523 | 21 | 356 | 8.97e-89 | 277 |
| MsG0180000869.01.T01 | AT5G11130 | 41.379 | 348 | 195 | 5 | 181 | 523 | 129 | 472 | 2.15e-88 | 280 |
| MsG0180000869.01.T01 | AT5G20260 | 43.243 | 333 | 179 | 5 | 197 | 523 | 1 | 329 | 2.15e-88 | 275 |
| MsG0180000869.01.T01 | AT3G42180 | 40.563 | 355 | 195 | 5 | 181 | 523 | 114 | 464 | 7.34e-87 | 276 |
| MsG0180000869.01.T01 | AT5G11130 | 41.867 | 332 | 184 | 5 | 197 | 523 | 1 | 328 | 5.77e-86 | 269 |
| MsG0180000869.01.T01 | AT5G33290 | 40.669 | 359 | 195 | 6 | 178 | 523 | 141 | 494 | 1.25e-85 | 274 |
| MsG0180000869.01.T01 | AT3G42180 | 40.708 | 339 | 185 | 5 | 197 | 523 | 1 | 335 | 9.75e-85 | 266 |
| MsG0180000869.01.T01 | AT4G38040 | 37.861 | 346 | 198 | 9 | 180 | 519 | 83 | 417 | 6.73e-74 | 241 |
| MsG0180000869.01.T01 | AT5G11610 | 62.112 | 161 | 59 | 1 | 150 | 308 | 169 | 329 | 1.00e-68 | 225 |
| MsG0180000869.01.T01 | AT4G38040 | 35.562 | 329 | 192 | 10 | 180 | 499 | 83 | 400 | 6.09e-61 | 206 |
| MsG0180000869.01.T01 | AT5G61840 | 27.809 | 356 | 200 | 14 | 200 | 518 | 48 | 383 | 4.12e-24 | 105 |
| MsG0180000869.01.T01 | AT1G27440 | 27.794 | 349 | 209 | 13 | 200 | 518 | 45 | 380 | 6.93e-24 | 104 |
| MsG0180000869.01.T01 | AT1G67410 | 25.305 | 328 | 210 | 10 | 217 | 518 | 88 | 406 | 1.35e-17 | 85.5 |
| MsG0180000869.01.T01 | AT3G03650 | 25.175 | 286 | 203 | 5 | 241 | 519 | 194 | 475 | 2.17e-16 | 82.4 |
| MsG0180000869.01.T01 | AT5G22940 | 25.633 | 316 | 178 | 10 | 241 | 519 | 153 | 448 | 3.19e-16 | 81.6 |
| MsG0180000869.01.T01 | AT5G22940 | 25.633 | 316 | 178 | 10 | 241 | 519 | 182 | 477 | 4.40e-16 | 81.3 |
| MsG0180000869.01.T01 | AT2G28110 | 23.284 | 335 | 188 | 11 | 201 | 491 | 94 | 403 | 6.05e-16 | 80.9 |
| MsG0180000869.01.T01 | AT3G45400 | 24.382 | 283 | 204 | 4 | 243 | 518 | 157 | 436 | 1.38e-14 | 76.6 |
| MsG0180000869.01.T01 | AT1G74680 | 25.651 | 269 | 185 | 6 | 241 | 499 | 150 | 413 | 2.81e-13 | 72.4 |
| MsG0180000869.01.T01 | AT5G16890 | 27.698 | 278 | 164 | 10 | 245 | 502 | 190 | 450 | 7.92e-13 | 71.2 |
| MsG0180000869.01.T01 | AT2G35100 | 24.497 | 298 | 186 | 10 | 243 | 518 | 130 | 410 | 1.12e-12 | 70.5 |
| MsG0180000869.01.T01 | AT1G21480 | 24.478 | 335 | 208 | 14 | 201 | 504 | 89 | 409 | 1.23e-12 | 70.5 |
| MsG0180000869.01.T01 | AT1G34270 | 24.224 | 322 | 190 | 12 | 223 | 502 | 115 | 424 | 1.41e-11 | 67.0 |
| MsG0180000869.01.T01 | AT1G21480 | 25.256 | 293 | 175 | 13 | 201 | 463 | 89 | 367 | 2.14e-11 | 66.2 |
| MsG0180000869.01.T01 | AT5G44930 | 25.000 | 272 | 175 | 9 | 243 | 501 | 129 | 384 | 5.16e-11 | 65.1 |
| MsG0180000869.01.T01 | AT5G44930 | 26.667 | 240 | 147 | 9 | 243 | 469 | 129 | 352 | 9.34e-11 | 64.3 |
| MsG0180000869.01.T01 | AT5G44930 | 26.667 | 240 | 147 | 9 | 243 | 469 | 129 | 352 | 9.34e-11 | 64.3 |
Find 100 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTACATTTGTTATATT+TGG | 0.070038 | 1:+12401502 | None:intergenic |
| ATATGATCCTTCACTCTATT+TGG | 0.169874 | 1:-12399275 | MsG0180000869.01.T01:CDS |
| TTTACTTACCTTTCAGTTCT+AGG | 0.170050 | 1:-12400575 | MsG0180000869.01.T01:CDS |
| TTGCGGCGAGACATTCTTTC+TGG | 0.172214 | 1:-12400470 | MsG0180000869.01.T01:CDS |
| AAGAATGATCCAAATCTTTA+TGG | 0.195262 | 1:-12401115 | MsG0180000869.01.T01:CDS |
| AATAGAACATTGCCATAATT+TGG | 0.209213 | 1:+12401805 | None:intergenic |
| GGAAAATTGCCAAAGGTTAA+AGG | 0.210719 | 1:-12399621 | MsG0180000869.01.T01:CDS |
| CAGTATGTTGAACCAAATTA+TGG | 0.217581 | 1:-12401817 | MsG0180000869.01.T01:CDS |
| CCAATCCAAAACCTCGAAAA+AGG | 0.233899 | 1:+12399458 | MsG0180000868.01.T01:CDS |
| ATGGATACTGTTTCAATAAC+TGG | 0.238752 | 1:-12401649 | MsG0180000869.01.T01:CDS |
| ATGGAAACATTATGATAAAT+TGG | 0.239209 | 1:+12401091 | None:intergenic |
| TAAAACAGATGAGCCTTCTT+TGG | 0.253536 | 1:+12400594 | None:intergenic |
| TTTCAGGAGCTATGAATTAA+TGG | 0.259030 | 1:-12400754 | MsG0180000869.01.T01:intron |
| AAGAGATTAATATGGCTTAT+TGG | 0.263100 | 1:-12401868 | MsG0180000869.01.T01:CDS |
| ATGCATGCTCCCTGCGAAAA+AGG | 0.268698 | 1:+12399707 | None:intergenic |
| GCGTTTCGGACGTATGTTTC+AGG | 0.278879 | 1:+12399786 | None:intergenic |
| AAATTCAAATGACTTTATTA+AGG | 0.282955 | 1:+12399082 | None:intergenic |
| TTCTAGTTGGTTGTCATGAT+TGG | 0.288754 | 1:-12400422 | MsG0180000869.01.T01:CDS |
| AGTTGCATTAACTTTCTCTA+TGG | 0.303467 | 1:+12401672 | None:intergenic |
| TGTCGGTGTTTCATAGTTCA+TGG | 0.306016 | 1:-12398894 | None:intergenic |
| GATCCTGACATGAAAATCTT+TGG | 0.308435 | 1:-12399642 | MsG0180000869.01.T01:CDS |
| GTGTATATCTTTGGAGGTTT+GGG | 0.311503 | 1:-12399105 | MsG0180000869.01.T01:three_prime_UTR |
| AATTTGTGTGTGTATATCTT+TGG | 0.313753 | 1:-12399114 | MsG0180000869.01.T01:three_prime_UTR |
| TGTGTATATCTTTGGAGGTT+TGG | 0.326935 | 1:-12399106 | MsG0180000869.01.T01:three_prime_UTR |
| ATTGTACTTTCTGATGATAT+TGG | 0.345521 | 1:+12401757 | None:intergenic |
| TAAATTGGACCATAAAGATT+TGG | 0.346934 | 1:+12401106 | None:intergenic |
| AGAGAAAGTTAATGCAACTA+TGG | 0.377379 | 1:-12401668 | MsG0180000869.01.T01:CDS |
| AAAGGTGGACTTAAATTTGT+TGG | 0.379002 | 1:+12401547 | None:intergenic |
| TTTGGATCATTCTTTACAAT+TGG | 0.380163 | 1:+12401124 | None:intergenic |
| CATTCTTTCTGGAACAGAAC+TGG | 0.382167 | 1:-12400459 | MsG0180000869.01.T01:CDS |
| TTACTGTTTCCTTTAACCTT+TGG | 0.391535 | 1:+12399612 | None:intergenic |
| TAGAAACAAAGAGATTAATA+TGG | 0.393063 | 1:-12401876 | MsG0180000869.01.T01:CDS |
| TCCCAATGTTTCAATAGTAT+TGG | 0.397546 | 1:+12399672 | None:intergenic |
| AAAACAGATGAGCCTTCTTT+GGG | 0.402028 | 1:+12400595 | None:intergenic |
| AAAATTGCTTCAACGACTCT+TGG | 0.402535 | 1:+12399525 | None:intergenic |
| AAGTACTGTATTTGTGCAAA+AGG | 0.404759 | 1:-12399564 | MsG0180000869.01.T01:CDS |
| GGAGCATGCATGGTTATCTA+AGG | 0.412660 | 1:-12399695 | MsG0180000869.01.T01:CDS |
| ACAAATTTAAGTCCACCTTT+TGG | 0.414392 | 1:-12401544 | MsG0180000869.01.T01:CDS |
| TTGTTGGAATTTGAGCGTTT+CGG | 0.415130 | 1:+12399772 | None:intergenic |
| TCTAGTTGGTTGTCATGATT+GGG | 0.419172 | 1:-12400421 | MsG0180000869.01.T01:intron |
| AAGAATGTCTCGCCGCAATC+TGG | 0.426134 | 1:+12400475 | None:intergenic |
| AAATTTGTTGGAGCATTCTC+AGG | 0.427775 | 1:+12401559 | None:intergenic |
| AGGTACAGAAGCATTTCCTT+TGG | 0.434501 | 1:-12399329 | MsG0180000869.01.T01:CDS |
| GCCAATACTATTGAAACATT+GGG | 0.446619 | 1:-12399673 | MsG0180000869.01.T01:CDS |
| TACGCTTGGCAAACTGCATA+AGG | 0.450418 | 1:-12399866 | MsG0180000869.01.T01:CDS |
| CTTGAAGATAAAGTAGGAAC+AGG | 0.452481 | 1:-12399218 | MsG0180000869.01.T01:three_prime_UTR |
| GTAAAAGAAGGATTTGTCTT+CGG | 0.456224 | 1:-12399825 | MsG0180000869.01.T01:CDS |
| GGCCAATACTATTGAAACAT+TGG | 0.458085 | 1:-12399674 | MsG0180000869.01.T01:CDS |
| TTCTGTCATTGTTCTGGAGA+AGG | 0.459845 | 1:-12399427 | MsG0180000869.01.T01:CDS |
| TACTTTCTATTCCAGAAAAG+AGG | 0.465367 | 1:-12399380 | MsG0180000869.01.T01:CDS |
| GGTATCTAAGCATGCTAATG+AGG | 0.468306 | 1:-12399359 | MsG0180000869.01.T01:CDS |
| AAATTATCAGATATAATAAC+CGG | 0.469771 | 1:+12399489 | MsG0180000868.01.T01:CDS |
| TTGTGTGTGTATATCTTTGG+AGG | 0.472221 | 1:-12399111 | MsG0180000869.01.T01:three_prime_UTR |
| GCATAGATTCCGGTGAGAAA+CGG | 0.474338 | 1:+12400675 | None:intergenic |
| CTGCATTCGCCGTTTCTCAC+CGG | 0.484618 | 1:-12400684 | MsG0180000869.01.T01:CDS |
| CTTATCTATGCAGGCTCCAT+CGG | 0.485233 | 1:-12399898 | MsG0180000869.01.T01:intron |
| CTCCAGAACAATGACAGAAA+AGG | 0.491004 | 1:+12399431 | MsG0180000868.01.T01:CDS |
| TTGCCACCGAGATCCCTTGT+TGG | 0.496706 | 1:+12399756 | None:intergenic |
| GTACCTGTGTCAATGTTGTC+TGG | 0.501604 | 1:-12398923 | MsG0180000869.01.T01:three_prime_UTR |
| AGAAACGGCGAATGCAGTAT+AGG | 0.502439 | 1:+12400690 | None:intergenic |
| GTTGGAGCATTCTCAGGAGA+AGG | 0.526477 | 1:+12401565 | None:intergenic |
| ATCGGAAACAAAATTACGCT+TGG | 0.526748 | 1:-12399880 | MsG0180000869.01.T01:CDS |
| TGACAGGATTCTTGTTCCAA+AGG | 0.530529 | 1:+12399313 | None:intergenic |
| CCCTTCAGAAGCATAGATTC+CGG | 0.536340 | 1:+12400665 | None:intergenic |
| TGAAATATATCATACTTGAC+AGG | 0.536585 | 1:+12399297 | None:intergenic |
| ATGCGAATTCTTCACATACA+AGG | 0.538204 | 1:+12400539 | None:intergenic |
| AGTACTGTATTTGTGCAAAA+GGG | 0.542312 | 1:-12399563 | MsG0180000869.01.T01:CDS |
| CAAATTCCAACAAGGGATCT+CGG | 0.545491 | 1:-12399762 | MsG0180000869.01.T01:CDS |
| ACCGGAATCTATGCTTCTGA+AGG | 0.545542 | 1:-12400666 | MsG0180000869.01.T01:CDS |
| AGATAACTTGAAGATAAAGT+AGG | 0.551404 | 1:-12399224 | MsG0180000869.01.T01:three_prime_UTR |
| ATGATTCAAAATTGTGACAT+TGG | 0.552021 | 1:+12401717 | None:intergenic |
| TGCAACGCCGATGTAAAAGA+AGG | 0.554573 | 1:-12399837 | MsG0180000869.01.T01:CDS |
| AGGGTGGTTTATGAAGCTAA+TGG | 0.555086 | 1:-12400646 | MsG0180000869.01.T01:CDS |
| GATATTGAATCAAGTTCTTG+TGG | 0.555739 | 1:+12400514 | None:intergenic |
| ATGTTGTCTGGTATTTGTGT+CGG | 0.559965 | 1:-12398911 | MsG0180000869.01.T01:three_prime_UTR |
| ACATTTGCCGTAGAACCAAA+AGG | 0.561326 | 1:+12401529 | None:intergenic |
| GTCGGCTGCAATTTCCGTGT+TGG | 0.566291 | 1:+12398984 | None:intergenic |
| TGAGTAATACCTCTTGAACA+TGG | 0.569127 | 1:+12401072 | None:intergenic |
| ATAATGTTTCCATGTTCAAG+AGG | 0.579284 | 1:-12401081 | MsG0180000869.01.T01:intron |
| TCTTCAAGTTATCTAGCTAG+TGG | 0.584802 | 1:+12399233 | None:intergenic |
| TTTGGTTCTACGGCAAATGT+CGG | 0.592484 | 1:-12401526 | MsG0180000869.01.T01:CDS |
| AATCTTTGGAAAATTGCCAA+AGG | 0.593584 | 1:-12399628 | MsG0180000869.01.T01:CDS |
| TCAACATTTGAAGACCACCT+TGG | 0.608491 | 1:+12401187 | None:intergenic |
| GAATCTATGCTTCTGAAGGG+TGG | 0.610066 | 1:-12400662 | MsG0180000869.01.T01:CDS |
| TTTCAGTTCTAGGATGCTAG+AGG | 0.611661 | 1:-12400565 | MsG0180000869.01.T01:CDS |
| GTATCTAAGCATGCTAATGA+GGG | 0.611871 | 1:-12399358 | MsG0180000869.01.T01:CDS |
| TCTAGCATCCTAGAACTGAA+AGG | 0.616743 | 1:+12400567 | None:intergenic |
| AAAGTGTATGTATACAGAGA+AGG | 0.623220 | 1:-12400720 | MsG0180000869.01.T01:CDS |
| TATTGTACCAAATAGAGTGA+AGG | 0.643007 | 1:+12399268 | None:intergenic |
| GAAACGCTCAAATTCCAACA+AGG | 0.653680 | 1:-12399770 | MsG0180000869.01.T01:CDS |
| CCGGAATCTATGCTTCTGAA+GGG | 0.655733 | 1:-12400665 | MsG0180000869.01.T01:CDS |
| TCTTTCTGGAACAGAACTGG+AGG | 0.657177 | 1:-12400456 | MsG0180000869.01.T01:CDS |
| AAACGCTCAAATTCCAACAA+GGG | 0.666050 | 1:-12399769 | MsG0180000869.01.T01:CDS |
| AGTGATTGTATGTAATGTGT+CGG | 0.669043 | 1:+12398966 | None:intergenic |
| TGTTGATCAAGAGTTACTAG+AGG | 0.676250 | 1:-12401170 | MsG0180000869.01.T01:CDS |
| TGATTATGTAGACCAGATTG+CGG | 0.681170 | 1:-12400487 | MsG0180000869.01.T01:CDS |
| ATACCAGACAACATTGACAC+AGG | 0.685307 | 1:+12398920 | None:intergenic |
| TTTGCCGTAGAACCAAAAGG+TGG | 0.722490 | 1:+12401532 | None:intergenic |
| AAACATCTATATGTCCAACA+CGG | 0.727901 | 1:-12398998 | MsG0180000869.01.T01:three_prime_UTR |
| ATTCCAACAAGGGATCTCGG+TGG | 0.770272 | 1:-12399759 | MsG0180000869.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATCAGATATAATAAC+CGG | + | Chr1:12401317-12401336 | None:intergenic | 15.0% |
| !! | AAATTCAAATGACTTTATTA+AGG | + | Chr1:12401724-12401743 | None:intergenic | 15.0% |
| !!! | AGTAGTATATTTTTCAAATT+TGG | + | Chr1:12401407-12401426 | None:intergenic | 15.0% |
| !! | ATGGAAACATTATGATAAAT+TGG | + | Chr1:12399715-12399734 | None:intergenic | 20.0% |
| !! | CACGAGTAAAAAAATATATA+AGG | - | Chr1:12401653-12401672 | MsG0180000869.01.T01:CDS | 20.0% |
| !! | TAGAAACAAAGAGATTAATA+TGG | - | Chr1:12398927-12398946 | MsG0180000869.01.T01:three_prime_UTR | 20.0% |
| !!! | AACACTACATTTGTTATATT+TGG | + | Chr1:12399304-12399323 | None:intergenic | 20.0% |
| !!! | AGTATATACGTTTTAAATTG+CGG | + | Chr1:12400599-12400618 | None:intergenic | 20.0% |
| ! | AAGAATGATCCAAATCTTTA+TGG | - | Chr1:12399688-12399707 | MsG0180000869.01.T01:CDS | 25.0% |
| ! | AAGAGATTAATATGGCTTAT+TGG | - | Chr1:12398935-12398954 | MsG0180000869.01.T01:three_prime_UTR | 25.0% |
| ! | AATAGAACATTGCCATAATT+TGG | + | Chr1:12399001-12399020 | None:intergenic | 25.0% |
| ! | AATTTGTGTGTGTATATCTT+TGG | - | Chr1:12401689-12401708 | MsG0180000869.01.T01:CDS | 25.0% |
| ! | ACATGAAACATGATAGTTAT+TGG | - | Chr1:12399979-12399998 | MsG0180000869.01.T01:intron | 25.0% |
| ! | AGATAACTTGAAGATAAAGT+AGG | - | Chr1:12401579-12401598 | MsG0180000869.01.T01:CDS | 25.0% |
| ! | ATGATTCAAAATTGTGACAT+TGG | + | Chr1:12399089-12399108 | None:intergenic | 25.0% |
| ! | ATTCATATTCGTGAAATTTC+AGG | + | Chr1:12399824-12399843 | None:intergenic | 25.0% |
| ! | ATTGTACTTTCTGATGATAT+TGG | + | Chr1:12399049-12399068 | None:intergenic | 25.0% |
| ! | GGTATAGAAACAAAAAACAT+AGG | - | Chr1:12400828-12400847 | MsG0180000869.01.T01:intron | 25.0% |
| ! | TAAAGGCAGTGAAAATATAA+AGG | + | Chr1:12400751-12400770 | None:intergenic | 25.0% |
| ! | TAAATTGGACCATAAAGATT+TGG | + | Chr1:12399700-12399719 | None:intergenic | 25.0% |
| ! | TGAAATATATCATACTTGAC+AGG | + | Chr1:12401509-12401528 | None:intergenic | 25.0% |
| ! | TTTGGATCATTCTTTACAAT+TGG | + | Chr1:12399682-12399701 | None:intergenic | 25.0% |
| ! | TTTGTCTACCATACATATTA+AGG | + | Chr1:12400486-12400505 | None:intergenic | 25.0% |
| !! | AATTTTCTATGAATGTGTTC+CGG | - | Chr1:12401295-12401314 | MsG0180000869.01.T01:intron | 25.0% |
| !! | TTATATTTTCACTGCCTTTA+TGG | - | Chr1:12400751-12400770 | MsG0180000869.01.T01:CDS | 25.0% |
| !!! | CTTCTATAAGTTATTTTCGA+AGG | + | Chr1:12399775-12399794 | None:intergenic | 25.0% |
| !!! | TTAATGTATTTTAGAAGCCA+AGG | - | Chr1:12399599-12399618 | MsG0180000869.01.T01:CDS | 25.0% |
| AAACATCTATATGTCCAACA+CGG | - | Chr1:12401805-12401824 | MsG0180000869.01.T01:CDS | 30.0% | |
| AAAGTGTATGTATACAGAGA+AGG | - | Chr1:12400083-12400102 | MsG0180000869.01.T01:intron | 30.0% | |
| ACTGCCTTAAACTGTTAAAA+CGG | - | Chr1:12399911-12399930 | MsG0180000869.01.T01:intron | 30.0% | |
| AGAGAAAGTTAATGCAACTA+TGG | - | Chr1:12399135-12399154 | MsG0180000869.01.T01:three_prime_UTR | 30.0% | |
| AGTACTGTATTTGTGCAAAA+GGG | - | Chr1:12401240-12401259 | MsG0180000869.01.T01:intron | 30.0% | |
| AGTGATTGTATGTAATGTGT+CGG | + | Chr1:12401840-12401859 | None:intergenic | 30.0% | |
| AGTTGCATTAACTTTCTCTA+TGG | + | Chr1:12399134-12399153 | None:intergenic | 30.0% | |
| ATAATGTTTCCATGTTCAAG+AGG | - | Chr1:12399722-12399741 | MsG0180000869.01.T01:CDS | 30.0% | |
| ATATGATCCTTCACTCTATT+TGG | - | Chr1:12401528-12401547 | MsG0180000869.01.T01:CDS | 30.0% | |
| ATGGATACTGTTTCAATAAC+TGG | - | Chr1:12399154-12399173 | MsG0180000869.01.T01:three_prime_UTR | 30.0% | |
| CACAATATAGTTGTGTATGA+AGG | - | Chr1:12400543-12400562 | MsG0180000869.01.T01:CDS | 30.0% | |
| CAGTATGTTGAACCAAATTA+TGG | - | Chr1:12398986-12399005 | MsG0180000869.01.T01:three_prime_UTR | 30.0% | |
| CAGTGAAAATATAAAGGTTC+TGG | + | Chr1:12400745-12400764 | None:intergenic | 30.0% | |
| GATATTGAATCAAGTTCTTG+TGG | + | Chr1:12400292-12400311 | None:intergenic | 30.0% | |
| GATTGACAATACTGTCTTTA+TGG | - | Chr1:12400807-12400826 | MsG0180000869.01.T01:intron | 30.0% | |
| GCCAATACTATTGAAACATT+GGG | - | Chr1:12401130-12401149 | MsG0180000869.01.T01:CDS | 30.0% | |
| GGATTGTTCAAATTCCATAA+AGG | + | Chr1:12400768-12400787 | None:intergenic | 30.0% | |
| GTAAAAGAAGGATTTGTCTT+CGG | - | Chr1:12400978-12400997 | MsG0180000869.01.T01:intron | 30.0% | |
| GTATTGTCAATCATATATCG+CGG | + | Chr1:12400799-12400818 | None:intergenic | 30.0% | |
| GTTGTGATCCTTAATATGTA+TGG | - | Chr1:12400475-12400494 | MsG0180000869.01.T01:CDS | 30.0% | |
| TACAAGATACTTATCTATGC+AGG | - | Chr1:12400896-12400915 | MsG0180000869.01.T01:intron | 30.0% | |
| TACTTTCTATTCCAGAAAAG+AGG | - | Chr1:12401423-12401442 | MsG0180000869.01.T01:intron | 30.0% | |
| TATTGTACCAAATAGAGTGA+AGG | + | Chr1:12401538-12401557 | None:intergenic | 30.0% | |
| TCCCAATGTTTCAATAGTAT+TGG | + | Chr1:12401134-12401153 | None:intergenic | 30.0% | |
| TTACTGTTTCCTTTAACCTT+TGG | + | Chr1:12401194-12401213 | None:intergenic | 30.0% | |
| TTTAAAAACCGACATCAAAC+CGG | - | Chr1:12399878-12399897 | MsG0180000869.01.T01:CDS | 30.0% | |
| TTTACTTACCTTTCAGTTCT+AGG | - | Chr1:12400228-12400247 | MsG0180000869.01.T01:intron | 30.0% | |
| TTTAGTCCATCATTACAGAA+TGG | - | Chr1:12399366-12399385 | MsG0180000869.01.T01:CDS | 30.0% | |
| TTTCAGGAGCTATGAATTAA+TGG | - | Chr1:12400049-12400068 | MsG0180000869.01.T01:intron | 30.0% | |
| ! | AAAGGTGGACTTAAATTTGT+TGG | + | Chr1:12399259-12399278 | None:intergenic | 30.0% |
| ! | AAGTACTGTATTTGTGCAAA+AGG | - | Chr1:12401239-12401258 | MsG0180000869.01.T01:intron | 30.0% |
| ! | AATCTTTGGAAAATTGCCAA+AGG | - | Chr1:12401175-12401194 | MsG0180000869.01.T01:CDS | 30.0% |
| ! | ACAAATTTAAGTCCACCTTT+TGG | - | Chr1:12399259-12399278 | MsG0180000869.01.T01:CDS | 30.0% |
| ! | CAATCACAGTATAAAGGTTT+TGG | + | Chr1:12400572-12400591 | None:intergenic | 30.0% |
| ! | CAGAAAAGTACAGACAAATT+TGG | - | Chr1:12400675-12400694 | MsG0180000869.01.T01:CDS | 30.0% |
| ! | GACAAATCCTTCTTTTACAT+CGG | + | Chr1:12400976-12400995 | None:intergenic | 30.0% |
| ! | TTTCCAAAGATTTTCATGTC+AGG | + | Chr1:12401167-12401186 | None:intergenic | 30.0% |
| !! | TCTCGTATTTTAAATTGCGA+TGG | - | Chr1:12400439-12400458 | MsG0180000869.01.T01:CDS | 30.0% |
| !!! | GATTTGTTTTGTGACAATTC+TGG | + | Chr1:12399193-12399212 | None:intergenic | 30.0% |
| AAAACAGATGAGCCTTCTTT+GGG | + | Chr1:12400211-12400230 | None:intergenic | 35.0% | |
| AAAATTGCTTCAACGACTCT+TGG | + | Chr1:12401281-12401300 | None:intergenic | 35.0% | |
| AAACGCTCAAATTCCAACAA+GGG | - | Chr1:12401034-12401053 | MsG0180000869.01.T01:intron | 35.0% | |
| ACGTATATACTGTTCGAACT+TGG | - | Chr1:12400608-12400627 | MsG0180000869.01.T01:CDS | 35.0% | |
| ATAACAACTGCATTTGTGGT+CGG | + | Chr1:12400706-12400725 | None:intergenic | 35.0% | |
| ATCGGAAACAAAATTACGCT+TGG | - | Chr1:12400923-12400942 | MsG0180000869.01.T01:intron | 35.0% | |
| ATGCGAATTCTTCACATACA+AGG | + | Chr1:12400267-12400286 | None:intergenic | 35.0% | |
| ATGTTGTCTGGTATTTGTGT+CGG | - | Chr1:12401892-12401911 | MsG0180000869.01.T01:CDS | 35.0% | |
| ATTGTGACTGCAATTGTAGT+CGG | + | Chr1:12400529-12400548 | None:intergenic | 35.0% | |
| CAATCCAAAACCTCGAAAAA+GGG | + | Chr1:12401347-12401366 | None:intergenic | 35.0% | |
| CATGCTAATGAGGGTAAAAA+AGG | - | Chr1:12401454-12401473 | MsG0180000869.01.T01:intron | 35.0% | |
| CATGTTTCATGTAACCACTA+TGG | + | Chr1:12399971-12399990 | None:intergenic | 35.0% | |
| CTACATAACAACTGCATTTG+TGG | + | Chr1:12400710-12400729 | None:intergenic | 35.0% | |
| CTGCCTTAAACTGTTAAAAC+GGG | - | Chr1:12399912-12399931 | MsG0180000869.01.T01:intron | 35.0% | |
| CTTGAAGATAAAGTAGGAAC+AGG | - | Chr1:12401585-12401604 | MsG0180000869.01.T01:CDS | 35.0% | |
| GATCCTGACATGAAAATCTT+TGG | - | Chr1:12401161-12401180 | MsG0180000869.01.T01:CDS | 35.0% | |
| GGAAAATTGCCAAAGGTTAA+AGG | - | Chr1:12401182-12401201 | MsG0180000869.01.T01:CDS | 35.0% | |
| GGCCAATACTATTGAAACAT+TGG | - | Chr1:12401129-12401148 | MsG0180000869.01.T01:CDS | 35.0% | |
| GGTTCACAATCACAGTATAA+AGG | + | Chr1:12400578-12400597 | None:intergenic | 35.0% | |
| GTATCTAAGCATGCTAATGA+GGG | - | Chr1:12401445-12401464 | MsG0180000869.01.T01:intron | 35.0% | |
| TAAAACAGATGAGCCTTCTT+TGG | + | Chr1:12400212-12400231 | None:intergenic | 35.0% | |
| TCATATATCGCGGAAAATTG+CGG | + | Chr1:12400789-12400808 | None:intergenic | 35.0% | |
| TCCTGAAAATTACAGTCACA+TGG | + | Chr1:12400037-12400056 | None:intergenic | 35.0% | |
| TCTAGTTGGTTGTCATGATT+GGG | - | Chr1:12400382-12400401 | MsG0180000869.01.T01:intron | 35.0% | |
| TGAGTAATACCTCTTGAACA+TGG | + | Chr1:12399734-12399753 | None:intergenic | 35.0% | |
| TGATCGCAATATAAAACCTG+AGG | + | Chr1:12400637-12400656 | None:intergenic | 35.0% | |
| TGATTATGTAGACCAGATTG+CGG | - | Chr1:12400316-12400335 | MsG0180000869.01.T01:intron | 35.0% | |
| TGCCTTAAACTGTTAAAACG+GGG | - | Chr1:12399913-12399932 | MsG0180000869.01.T01:intron | 35.0% | |
| TGTTACCAAAAACCCAAAGA+AGG | - | Chr1:12400196-12400215 | MsG0180000869.01.T01:intron | 35.0% | |
| TGTTGATCAAGAGTTACTAG+AGG | - | Chr1:12399633-12399652 | MsG0180000869.01.T01:CDS | 35.0% | |
| TTCATGTAACCACTATGGTT+CGG | + | Chr1:12399966-12399985 | None:intergenic | 35.0% | |
| TTGTGTGTGTATATCTTTGG+AGG | - | Chr1:12401692-12401711 | MsG0180000869.01.T01:CDS | 35.0% | |
| TTGTTGGAATTTGAGCGTTT+CGG | + | Chr1:12401034-12401053 | None:intergenic | 35.0% | |
| ! | ATCCTTTTCTGTCATTGTTC+TGG | - | Chr1:12401370-12401389 | MsG0180000869.01.T01:intron | 35.0% |
| ! | ATGCTTAGATACCTCTTTTC+TGG | + | Chr1:12401437-12401456 | None:intergenic | 35.0% |
| ! | CACTGTCGTGACTTTTTAAT+CGG | + | Chr1:12399462-12399481 | MsG0180000868.01.T01:CDS | 35.0% |
| ! | GTGTATATCTTTGGAGGTTT+GGG | - | Chr1:12401698-12401717 | MsG0180000869.01.T01:CDS | 35.0% |
| ! | TCCATGTGACTGTAATTTTC+AGG | - | Chr1:12400033-12400052 | MsG0180000869.01.T01:intron | 35.0% |
| ! | TCTTCAAGTTATCTAGCTAG+TGG | + | Chr1:12401573-12401592 | None:intergenic | 35.0% |
| ! | TGTGTATATCTTTGGAGGTT+TGG | - | Chr1:12401697-12401716 | MsG0180000869.01.T01:CDS | 35.0% |
| ! | TTCTAGTTGGTTGTCATGAT+TGG | - | Chr1:12400381-12400400 | MsG0180000869.01.T01:intron | 35.0% |
| !! | AAATTTGTTGGAGCATTCTC+AGG | + | Chr1:12399247-12399266 | None:intergenic | 35.0% |
| !! | AAGCGTAATTTTGTTTCCGA+TGG | + | Chr1:12400924-12400943 | None:intergenic | 35.0% |
| !! | ATGTATTTTAGAAGCCAAGG+TGG | - | Chr1:12399602-12399621 | MsG0180000869.01.T01:CDS | 35.0% |
| !! | CAGGTTTTATATTGCGATCA+CGG | - | Chr1:12400637-12400656 | MsG0180000869.01.T01:CDS | 35.0% |
| !! | CGTATTTTAAATTGCGATGG+CGG | - | Chr1:12400442-12400461 | MsG0180000869.01.T01:CDS | 35.0% |
| !!! | CTTTTTCGAGGTTTTGGATT+GGG | - | Chr1:12401346-12401365 | MsG0180000869.01.T01:intron | 35.0% |
| !!! | GTTATTTTGGTGGTCAATCA+CGG | + | Chr1:12399944-12399963 | None:intergenic | 35.0% |
| ACATTTGCCGTAGAACCAAA+AGG | + | Chr1:12399277-12399296 | None:intergenic | 40.0% | |
| AGGGTGGTTTATGAAGCTAA+TGG | - | Chr1:12400157-12400176 | MsG0180000869.01.T01:intron | 40.0% | |
| AGTCCATCATTACAGAATGG+TGG | - | Chr1:12399369-12399388 | MsG0180000869.01.T01:CDS | 40.0% | |
| ATACCAGACAACATTGACAC+AGG | + | Chr1:12401886-12401905 | None:intergenic | 40.0% | |
| CAAATTCCAACAAGGGATCT+CGG | - | Chr1:12401041-12401060 | MsG0180000869.01.T01:intron | 40.0% | |
| CCAAAATAACCGAACCATAG+TGG | - | Chr1:12399954-12399973 | MsG0180000869.01.T01:intron | 40.0% | |
| CCAATCCAAAACCTCGAAAA+AGG | + | Chr1:12401348-12401367 | None:intergenic | 40.0% | |
| CGAGACAAGAGTTCTTCTAT+CGG | - | Chr1:12399399-12399418 | MsG0180000869.01.T01:CDS | 40.0% | |
| CTCCAGAACAATGACAGAAA+AGG | + | Chr1:12401375-12401394 | None:intergenic | 40.0% | |
| GAAACGCTCAAATTCCAACA+AGG | - | Chr1:12401033-12401052 | MsG0180000869.01.T01:intron | 40.0% | |
| GGTATCTAAGCATGCTAATG+AGG | - | Chr1:12401444-12401463 | MsG0180000869.01.T01:intron | 40.0% | |
| TAGACAAATGCTGCCAAATG+TGG | - | Chr1:12400498-12400517 | MsG0180000869.01.T01:CDS | 40.0% | |
| TCAACATTTGAAGACCACCT+TGG | + | Chr1:12399619-12399638 | None:intergenic | 40.0% | |
| TCTAGCATCCTAGAACTGAA+AGG | + | Chr1:12400239-12400258 | None:intergenic | 40.0% | |
| TGAATTTCTTGACGCTCCTT+AGG | + | Chr1:12399435-12399454 | MsG0180000868.01.T01:CDS | 40.0% | |
| TGACAGGATTCTTGTTCCAA+AGG | + | Chr1:12401493-12401512 | None:intergenic | 40.0% | |
| TTGCCACCATTCTGTAATGA+TGG | + | Chr1:12399375-12399394 | MsG0180000868.01.T01:CDS | 40.0% | |
| !! | AGCCCCGTTTTAACAGTTTA+AGG | + | Chr1:12399918-12399937 | None:intergenic | 40.0% |
| !! | AGGTACAGAAGCATTTCCTT+TGG | - | Chr1:12401474-12401493 | MsG0180000869.01.T01:intron | 40.0% |
| !! | ATGAGCCTTCTTTGGGTTTT+TGG | + | Chr1:12400204-12400223 | None:intergenic | 40.0% |
| !! | CATTCTTTCTGGAACAGAAC+TGG | - | Chr1:12400344-12400363 | MsG0180000869.01.T01:intron | 40.0% |
| !! | TTCTGTCATTGTTCTGGAGA+AGG | - | Chr1:12401376-12401395 | MsG0180000869.01.T01:intron | 40.0% |
| !! | TTTCAGTTCTAGGATGCTAG+AGG | - | Chr1:12400238-12400257 | MsG0180000869.01.T01:intron | 40.0% |
| !! | TTTGGTTCTACGGCAAATGT+CGG | - | Chr1:12399277-12399296 | MsG0180000869.01.T01:CDS | 40.0% |
| !!! | AAGTCCACCTTTTGGTTCTA+CGG | - | Chr1:12399267-12399286 | MsG0180000869.01.T01:CDS | 40.0% |
| !!! | ACAACATTAGCCTTTTTCGC+AGG | - | Chr1:12401086-12401105 | MsG0180000869.01.T01:CDS | 40.0% |
| !!! | CAACATTAGCCTTTTTCGCA+GGG | - | Chr1:12401087-12401106 | MsG0180000869.01.T01:CDS | 40.0% |
| !!! | CCACTATGGTTCGGTTATTT+TGG | + | Chr1:12399957-12399976 | None:intergenic | 40.0% |
| !!! | CCTTTTTCGAGGTTTTGGAT+TGG | - | Chr1:12401345-12401364 | MsG0180000869.01.T01:intron | 40.0% |
| !!! | CTATGGTTCGGTTATTTTGG+TGG | + | Chr1:12399954-12399973 | None:intergenic | 40.0% |
| !!! | GGTGCTGATCATTTTCTAGT+TGG | - | Chr1:12400368-12400387 | MsG0180000869.01.T01:intron | 40.0% |
| ACCGGAATCTATGCTTCTGA+AGG | - | Chr1:12400137-12400156 | MsG0180000869.01.T01:intron | 45.0% | |
| AGAAACGGCGAATGCAGTAT+AGG | + | Chr1:12400116-12400135 | None:intergenic | 45.0% | |
| CCGGAATCTATGCTTCTGAA+GGG | - | Chr1:12400138-12400157 | MsG0180000869.01.T01:intron | 45.0% | |
| CTTATCTATGCAGGCTCCAT+CGG | - | Chr1:12400905-12400924 | MsG0180000869.01.T01:intron | 45.0% | |
| GACTGCAATTGTAGTCGGAT+TGG | + | Chr1:12400524-12400543 | None:intergenic | 45.0% | |
| GCATAGATTCCGGTGAGAAA+CGG | + | Chr1:12400131-12400150 | None:intergenic | 45.0% | |
| GGAGCATGCATGGTTATCTA+AGG | - | Chr1:12401108-12401127 | MsG0180000869.01.T01:CDS | 45.0% | |
| GTACCTGTGTCAATGTTGTC+TGG | - | Chr1:12401880-12401899 | MsG0180000869.01.T01:CDS | 45.0% | |
| TAAGGCAGTTGAATCCTGAC+CGG | + | Chr1:12399900-12399919 | None:intergenic | 45.0% | |
| TACGCTTGGCAAACTGCATA+AGG | - | Chr1:12400937-12400956 | MsG0180000869.01.T01:intron | 45.0% | |
| TCCAAAACCTCGAAAAAGGG+TGG | + | Chr1:12401344-12401363 | None:intergenic | 45.0% | |
| TGCAACGCCGATGTAAAAGA+AGG | - | Chr1:12400966-12400985 | MsG0180000869.01.T01:intron | 45.0% | |
| TGTTCGAACTTGGAAACCTC+AGG | - | Chr1:12400618-12400637 | MsG0180000869.01.T01:CDS | 45.0% | |
| TTTGCCGTAGAACCAAAAGG+TGG | + | Chr1:12399274-12399293 | None:intergenic | 45.0% | |
| ! | CCCTTCAGAAGCATAGATTC+CGG | + | Chr1:12400141-12400160 | None:intergenic | 45.0% |
| ! | GAATCTATGCTTCTGAAGGG+TGG | - | Chr1:12400141-12400160 | MsG0180000869.01.T01:intron | 45.0% |
| ! | TTTTACATCGGCGTTGCAGA+GGG | + | Chr1:12400964-12400983 | None:intergenic | 45.0% |
| !! | AATCCTGACCGGTTTGATGT+CGG | + | Chr1:12399889-12399908 | None:intergenic | 45.0% |
| !! | TCTTTCTGGAACAGAACTGG+AGG | - | Chr1:12400347-12400366 | MsG0180000869.01.T01:intron | 45.0% |
| !! | TTTTGTGCCACCCTTTTTCG+AGG | - | Chr1:12401334-12401353 | MsG0180000869.01.T01:intron | 45.0% |
| AAACCGACATCAAACCGGTC+AGG | - | Chr1:12399883-12399902 | MsG0180000869.01.T01:CDS | 50.0% | |
| AAGAATGTCTCGCCGCAATC+TGG | + | Chr1:12400331-12400350 | None:intergenic | 50.0% | |
| ATGCATGCTCCCTGCGAAAA+AGG | + | Chr1:12401099-12401118 | None:intergenic | 50.0% | |
| ATTCCAACAAGGGATCTCGG+TGG | - | Chr1:12401044-12401063 | MsG0180000869.01.T01:intron | 50.0% | |
| CAACTGCATTTGTGGTCGGA+TGG | + | Chr1:12400702-12400721 | None:intergenic | 50.0% | |
| CCACTGATCGATACGAAGCA+TGG | + | Chr1:12399514-12399533 | None:intergenic | 50.0% | |
| GATCACGGTTGCAGATAAGG+TGG | - | Chr1:12400652-12400671 | MsG0180000869.01.T01:CDS | 50.0% | |
| GCGTTTCGGACGTATGTTTC+AGG | + | Chr1:12401020-12401039 | None:intergenic | 50.0% | |
| TGCGATCACGGTTGCAGATA+AGG | - | Chr1:12400649-12400668 | MsG0180000869.01.T01:CDS | 50.0% | |
| TTGCGGCGAGACATTCTTTC+TGG | - | Chr1:12400333-12400352 | MsG0180000869.01.T01:intron | 50.0% | |
| ! | CCATGCTTCGTATCGATCAG+TGG | - | Chr1:12399511-12399530 | MsG0180000869.01.T01:CDS | 50.0% |
| ! | CTTTTACATCGGCGTTGCAG+AGG | + | Chr1:12400965-12400984 | None:intergenic | 50.0% |
| ! | GTTGGAGCATTCTCAGGAGA+AGG | + | Chr1:12399241-12399260 | None:intergenic | 50.0% |
| !! | GTAGTCGGATTGGCCACATT+TGG | + | Chr1:12400514-12400533 | None:intergenic | 50.0% |
| !! | TTTTTCGCAGGGAGCATGCA+TGG | - | Chr1:12401098-12401117 | MsG0180000869.01.T01:CDS | 50.0% |
| !!! | GCCACCCTTTTTCGAGGTTT+TGG | - | Chr1:12401340-12401359 | MsG0180000869.01.T01:intron | 50.0% |
| CTGCATTCGCCGTTTCTCAC+CGG | - | Chr1:12400119-12400138 | MsG0180000869.01.T01:intron | 55.0% | |
| GTCGGCTGCAATTTCCGTGT+TGG | + | Chr1:12401822-12401841 | None:intergenic | 55.0% | |
| TATCGGCAGCACTGTGCCTA+AGG | - | Chr1:12399416-12399435 | MsG0180000869.01.T01:CDS | 55.0% | |
| TTGCCACCGAGATCCCTTGT+TGG | + | Chr1:12401050-12401069 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 12398896 | 12401929 | 12398896 | ID=MsG0180000869.01;Name=MsG0180000869.01 |
| Chr1 | mRNA | 12398896 | 12401929 | 12398896 | ID=MsG0180000869.01.T01;Parent=MsG0180000869.01;Name=MsG0180000869.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0.66|0.75|1|1|1|4|349|528 |
| Chr1 | exon | 12401486 | 12401929 | 12401486 | ID=MsG0180000869.01.T01:exon:218;Parent=MsG0180000869.01.T01 |
| Chr1 | exon | 12401082 | 12401212 | 12401082 | ID=MsG0180000869.01.T01:exon:219;Parent=MsG0180000869.01.T01 |
| Chr1 | exon | 12400422 | 12400770 | 12400422 | ID=MsG0180000869.01.T01:exon:220;Parent=MsG0180000869.01.T01 |
| Chr1 | exon | 12398896 | 12399907 | 12398896 | ID=MsG0180000869.01.T01:exon:221;Parent=MsG0180000869.01.T01 |
| Chr1 | CDS | 12401486 | 12401929 | 12401486 | ID=MsG0180000869.01.T01:cds;Parent=MsG0180000869.01.T01 |
| Chr1 | CDS | 12401082 | 12401212 | 12401082 | ID=MsG0180000869.01.T01:cds;Parent=MsG0180000869.01.T01 |
| Chr1 | CDS | 12400422 | 12400770 | 12400422 | ID=MsG0180000869.01.T01:cds;Parent=MsG0180000869.01.T01 |
| Chr1 | CDS | 12399245 | 12399907 | 12399245 | ID=MsG0180000869.01.T01:cds;Parent=MsG0180000869.01.T01 |
| Chr1 | three_prime_UTR | 12398896 | 12399244 | 12398896 | ID=MsG0180000869.01.T01:three_prime_utr;Parent=MsG0180000869.01.T01 |
| Gene Sequence |
| Protein sequence |
