Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002322.01.T01 | XP_003588379.2 | 91.176 | 612 | 29 | 3 | 1 | 611 | 1 | 588 | 0 | 1144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002322.01.T01 | Q9FFN2 | 44.557 | 395 | 205 | 6 | 222 | 606 | 121 | 511 | 1.43E-107 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002322.01.T01 | G7IB43 | 91.176 | 612 | 29 | 3 | 1 | 611 | 1 | 588 | 0.0 | 1144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000869.01 | MsG0180002322.01 | 0.918660 | 1.184488e-86 | 3.648442e-82 |
| MsG0180002322.01 | MsG0280010942.01 | 0.818122 | 2.311467e-52 | 1.715186e-49 |
| MsG0180002322.01 | MsG0580029897.01 | 0.801061 | 1.075694e-48 | 5.088726e-46 |
| MsG0180002322.01 | MsG0680031334.01 | 0.809339 | 1.986845e-50 | 1.163482e-47 |
| MsG0180002322.01 | MsG0680031692.01 | 0.804540 | 2.056905e-49 | 1.063312e-46 |
| MsG0180002322.01 | MsG0880046471.01 | 0.806819 | 6.835239e-50 | 3.746509e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002322.01.T01 | MTR_1g006600 | 91.176 | 612 | 29 | 3 | 1 | 611 | 1 | 588 | 0.0 | 1144 |
| MsG0180002322.01.T01 | MTR_3g110198 | 63.520 | 625 | 184 | 9 | 1 | 611 | 1 | 595 | 0.0 | 774 |
| MsG0180002322.01.T01 | MTR_7g103150 | 75.176 | 427 | 105 | 1 | 185 | 611 | 61 | 486 | 0.0 | 692 |
| MsG0180002322.01.T01 | MTR_8g102840 | 49.918 | 613 | 287 | 8 | 5 | 607 | 5 | 607 | 0.0 | 586 |
| MsG0180002322.01.T01 | MTR_3g110200 | 47.444 | 626 | 267 | 10 | 3 | 607 | 4 | 588 | 0.0 | 579 |
| MsG0180002322.01.T01 | MTR_1g090733 | 64.402 | 368 | 125 | 2 | 240 | 606 | 182 | 544 | 3.94e-177 | 513 |
| MsG0180002322.01.T01 | MTR_4g100730 | 60.215 | 372 | 142 | 4 | 241 | 606 | 161 | 532 | 2.71e-161 | 473 |
| MsG0180002322.01.T01 | MTR_8g102840 | 45.731 | 527 | 266 | 8 | 5 | 521 | 5 | 521 | 1.90e-148 | 439 |
| MsG0180002322.01.T01 | MTR_7g103260 | 45.573 | 384 | 195 | 5 | 233 | 606 | 14 | 393 | 7.53e-115 | 348 |
| MsG0180002322.01.T01 | MTR_3g097310 | 44.063 | 379 | 197 | 4 | 239 | 606 | 113 | 487 | 9.71e-113 | 346 |
| MsG0180002322.01.T01 | MTR_7g103270 | 45.600 | 375 | 193 | 4 | 239 | 606 | 24 | 394 | 3.28e-112 | 342 |
| MsG0180002322.01.T01 | MTR_3g081240 | 42.664 | 443 | 229 | 6 | 180 | 606 | 9 | 442 | 5.84e-108 | 332 |
| MsG0180002322.01.T01 | MTR_1g061760 | 45.040 | 373 | 191 | 7 | 243 | 606 | 113 | 480 | 2.35e-106 | 330 |
| MsG0180002322.01.T01 | MTR_3g080690 | 44.882 | 381 | 193 | 4 | 239 | 606 | 64 | 440 | 5.22e-105 | 325 |
| MsG0180002322.01.T01 | MTR_3g106690 | 45.455 | 341 | 178 | 4 | 271 | 606 | 50 | 387 | 7.11e-96 | 299 |
| MsG0180002322.01.T01 | MTR_4g115540 | 41.039 | 385 | 206 | 6 | 239 | 606 | 240 | 620 | 9.69e-90 | 291 |
| MsG0180002322.01.T01 | MTR_4g115460 | 41.344 | 387 | 200 | 7 | 239 | 606 | 80 | 458 | 2.26e-88 | 282 |
| MsG0180002322.01.T01 | MTR_4g115530 | 39.718 | 355 | 195 | 8 | 264 | 606 | 39 | 386 | 1.93e-79 | 256 |
| MsG0180002322.01.T01 | MTR_4g115530 | 39.823 | 339 | 185 | 8 | 280 | 606 | 1 | 332 | 5.03e-76 | 246 |
| MsG0180002322.01.T01 | MTR_5g031480 | 36.127 | 346 | 204 | 9 | 263 | 602 | 73 | 407 | 4.21e-73 | 241 |
| MsG0180002322.01.T01 | MTR_5g049790 | 35.652 | 345 | 191 | 11 | 263 | 602 | 109 | 427 | 2.89e-67 | 226 |
| MsG0180002322.01.T01 | MTR_4g115540 | 39.057 | 297 | 160 | 6 | 239 | 518 | 240 | 532 | 5.01e-60 | 209 |
| MsG0180002322.01.T01 | MTR_7g085840 | 36.127 | 346 | 177 | 13 | 280 | 605 | 1 | 322 | 2.38e-55 | 191 |
| MsG0180002322.01.T01 | MTR_5g031480 | 34.944 | 269 | 158 | 9 | 263 | 525 | 73 | 330 | 4.21e-47 | 169 |
| MsG0180002322.01.T01 | MTR_5g031480 | 34.701 | 268 | 158 | 9 | 263 | 524 | 73 | 329 | 1.32e-46 | 167 |
| MsG0180002322.01.T01 | MTR_5g049790 | 34.842 | 221 | 128 | 8 | 263 | 478 | 126 | 335 | 1.78e-35 | 137 |
| MsG0180002322.01.T01 | MTR_5g049790 | 34.842 | 221 | 128 | 8 | 263 | 478 | 109 | 318 | 2.18e-35 | 136 |
| MsG0180002322.01.T01 | MTR_8g096160 | 28.652 | 356 | 197 | 14 | 283 | 601 | 49 | 384 | 1.65e-25 | 109 |
| MsG0180002322.01.T01 | MTR_8g096140 | 28.652 | 356 | 197 | 14 | 283 | 601 | 49 | 384 | 9.96e-25 | 107 |
| MsG0180002322.01.T01 | MTR_4g057500 | 25.868 | 317 | 174 | 10 | 324 | 601 | 150 | 444 | 2.08e-18 | 89.0 |
| MsG0180002322.01.T01 | MTR_2g084245 | 25.466 | 322 | 176 | 11 | 280 | 560 | 85 | 383 | 2.47e-18 | 88.6 |
| MsG0180002322.01.T01 | MTR_7g087100 | 27.273 | 297 | 180 | 10 | 325 | 601 | 190 | 470 | 4.91e-18 | 87.8 |
| MsG0180002322.01.T01 | MTR_3g037720 | 25.256 | 293 | 194 | 7 | 324 | 601 | 188 | 470 | 1.89e-16 | 82.8 |
| MsG0180002322.01.T01 | MTR_6g027310 | 25.338 | 296 | 189 | 8 | 324 | 601 | 184 | 465 | 2.63e-16 | 82.4 |
| MsG0180002322.01.T01 | MTR_4g084200 | 25.743 | 303 | 175 | 11 | 326 | 602 | 163 | 441 | 7.58e-15 | 77.8 |
| MsG0180002322.01.T01 | MTR_3g085480 | 23.588 | 301 | 186 | 8 | 326 | 601 | 119 | 400 | 3.85e-14 | 75.1 |
| MsG0180002322.01.T01 | MTR_4g084200 | 26.016 | 246 | 142 | 8 | 326 | 548 | 163 | 391 | 1.54e-13 | 73.6 |
| MsG0180002322.01.T01 | MTR_4g084200 | 25.514 | 243 | 147 | 7 | 326 | 548 | 163 | 391 | 1.59e-13 | 73.6 |
| MsG0180002322.01.T01 | MTR_1g097090 | 25.234 | 321 | 187 | 13 | 306 | 585 | 115 | 423 | 1.61e-12 | 70.5 |
| MsG0180002322.01.T01 | MTR_1g097090 | 25.234 | 321 | 187 | 13 | 306 | 585 | 115 | 423 | 1.69e-12 | 70.5 |
| MsG0180002322.01.T01 | MTR_1g029350 | 25.982 | 331 | 198 | 14 | 281 | 579 | 71 | 386 | 3.08e-12 | 69.3 |
| MsG0180002322.01.T01 | MTR_8g080490 | 23.385 | 325 | 201 | 13 | 306 | 601 | 93 | 398 | 9.33e-12 | 67.8 |
| MsG0180002322.01.T01 | MTR_4g077920 | 25.830 | 271 | 178 | 9 | 328 | 585 | 184 | 444 | 2.07e-11 | 67.0 |
| MsG0180002322.01.T01 | MTR_4g077920 | 25.830 | 271 | 178 | 9 | 328 | 585 | 184 | 444 | 2.31e-11 | 66.6 |
| MsG0180002322.01.T01 | MTR_4g077920 | 27.679 | 224 | 146 | 7 | 375 | 585 | 166 | 386 | 4.03e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002322.01.T01 | AT5G25820 | 51.156 | 649 | 262 | 11 | 8 | 607 | 8 | 650 | 0.0 | 651 |
| MsG0180002322.01.T01 | AT4G32790 | 52.101 | 595 | 250 | 10 | 15 | 607 | 30 | 591 | 0.0 | 605 |
| MsG0180002322.01.T01 | AT4G32790 | 52.101 | 595 | 250 | 10 | 15 | 607 | 30 | 591 | 0.0 | 605 |
| MsG0180002322.01.T01 | AT4G32790 | 52.101 | 595 | 250 | 10 | 15 | 607 | 30 | 591 | 0.0 | 605 |
| MsG0180002322.01.T01 | AT5G19670 | 66.337 | 404 | 135 | 1 | 207 | 609 | 204 | 607 | 0.0 | 593 |
| MsG0180002322.01.T01 | AT5G19670 | 66.337 | 404 | 135 | 1 | 207 | 609 | 204 | 607 | 0.0 | 593 |
| MsG0180002322.01.T01 | AT5G11610 | 55.063 | 474 | 197 | 8 | 148 | 609 | 76 | 545 | 0.0 | 530 |
| MsG0180002322.01.T01 | AT5G37000 | 57.506 | 433 | 178 | 3 | 175 | 606 | 121 | 548 | 4.36e-180 | 521 |
| MsG0180002322.01.T01 | AT4G16745 | 59.189 | 370 | 145 | 4 | 241 | 604 | 157 | 526 | 1.07e-158 | 466 |
| MsG0180002322.01.T01 | AT4G16745 | 57.778 | 360 | 146 | 4 | 241 | 594 | 157 | 516 | 4.88e-147 | 438 |
| MsG0180002322.01.T01 | AT5G11610 | 50.670 | 373 | 169 | 7 | 148 | 509 | 76 | 444 | 4.03e-124 | 374 |
| MsG0180002322.01.T01 | AT5G03795 | 44.557 | 395 | 205 | 6 | 222 | 606 | 121 | 511 | 1.46e-108 | 336 |
| MsG0180002322.01.T01 | AT5G25310 | 45.407 | 381 | 189 | 9 | 239 | 606 | 101 | 475 | 2.44e-99 | 311 |
| MsG0180002322.01.T01 | AT3G07620 | 43.117 | 385 | 201 | 5 | 236 | 606 | 74 | 454 | 5.27e-97 | 305 |
| MsG0180002322.01.T01 | AT5G20260 | 42.693 | 349 | 190 | 5 | 264 | 606 | 117 | 461 | 3.63e-90 | 287 |
| MsG0180002322.01.T01 | AT5G11130 | 41.477 | 352 | 189 | 6 | 264 | 606 | 129 | 472 | 1.46e-87 | 281 |
| MsG0180002322.01.T01 | AT5G20260 | 42.941 | 340 | 184 | 5 | 273 | 606 | 21 | 356 | 1.65e-87 | 276 |
| MsG0180002322.01.T01 | AT5G20260 | 43.243 | 333 | 179 | 5 | 280 | 606 | 1 | 329 | 2.39e-87 | 275 |
| MsG0180002322.01.T01 | AT3G42180 | 40.000 | 355 | 197 | 5 | 264 | 606 | 114 | 464 | 3.25e-85 | 274 |
| MsG0180002322.01.T01 | AT5G11130 | 41.964 | 336 | 178 | 6 | 280 | 606 | 1 | 328 | 6.84e-85 | 269 |
| MsG0180002322.01.T01 | AT5G33290 | 40.111 | 359 | 197 | 6 | 261 | 606 | 141 | 494 | 6.34e-84 | 272 |
| MsG0180002322.01.T01 | AT3G42180 | 40.118 | 339 | 187 | 5 | 280 | 606 | 1 | 335 | 8.86e-83 | 263 |
| MsG0180002322.01.T01 | AT4G38040 | 38.150 | 346 | 197 | 9 | 263 | 602 | 83 | 417 | 2.55e-73 | 241 |
| MsG0180002322.01.T01 | AT5G11610 | 47.843 | 255 | 123 | 5 | 148 | 392 | 76 | 330 | 2.73e-73 | 239 |
| MsG0180002322.01.T01 | AT4G38040 | 35.866 | 329 | 191 | 10 | 263 | 582 | 83 | 400 | 2.29e-60 | 207 |
| MsG0180002322.01.T01 | AT5G61840 | 28.090 | 356 | 199 | 14 | 283 | 601 | 48 | 383 | 8.10e-25 | 107 |
| MsG0180002322.01.T01 | AT1G27440 | 28.080 | 349 | 208 | 13 | 283 | 601 | 45 | 380 | 1.40e-24 | 107 |
| MsG0180002322.01.T01 | AT5G22940 | 25.079 | 315 | 181 | 9 | 324 | 602 | 153 | 448 | 2.58e-17 | 85.5 |
| MsG0180002322.01.T01 | AT5G22940 | 25.079 | 315 | 181 | 9 | 324 | 602 | 182 | 477 | 3.44e-17 | 85.1 |
| MsG0180002322.01.T01 | AT2G28110 | 23.676 | 321 | 177 | 10 | 284 | 560 | 94 | 390 | 1.25e-16 | 83.2 |
| MsG0180002322.01.T01 | AT1G67410 | 25.672 | 335 | 200 | 13 | 300 | 601 | 88 | 406 | 2.71e-16 | 82.0 |
| MsG0180002322.01.T01 | AT3G03650 | 25.175 | 286 | 203 | 5 | 324 | 602 | 194 | 475 | 2.11e-15 | 79.7 |
| MsG0180002322.01.T01 | AT3G45400 | 24.382 | 283 | 204 | 4 | 326 | 601 | 157 | 436 | 4.63e-14 | 75.5 |
| MsG0180002322.01.T01 | AT1G74680 | 26.022 | 269 | 184 | 7 | 324 | 582 | 150 | 413 | 1.67e-13 | 73.6 |
| MsG0180002322.01.T01 | AT2G35100 | 24.161 | 298 | 187 | 9 | 326 | 601 | 130 | 410 | 9.79e-13 | 71.2 |
| MsG0180002322.01.T01 | AT5G16890 | 27.437 | 277 | 166 | 9 | 328 | 585 | 190 | 450 | 1.24e-12 | 70.9 |
| MsG0180002322.01.T01 | AT1G21480 | 23.582 | 335 | 211 | 13 | 284 | 587 | 89 | 409 | 3.93e-12 | 69.3 |
| MsG0180002322.01.T01 | AT1G34270 | 29.480 | 173 | 108 | 5 | 420 | 585 | 259 | 424 | 1.99e-11 | 67.0 |
| MsG0180002322.01.T01 | AT1G21480 | 24.573 | 293 | 177 | 12 | 284 | 546 | 89 | 367 | 2.45e-11 | 66.6 |
| MsG0180002322.01.T01 | AT5G44930 | 27.083 | 240 | 146 | 9 | 326 | 552 | 129 | 352 | 4.25e-11 | 65.5 |
| MsG0180002322.01.T01 | AT5G44930 | 27.083 | 240 | 146 | 9 | 326 | 552 | 129 | 352 | 6.03e-11 | 65.5 |
| MsG0180002322.01.T01 | AT5G44930 | 27.083 | 240 | 146 | 9 | 326 | 552 | 129 | 352 | 6.03e-11 | 65.5 |
Find 121 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGCGAGACATTCTTTC+TGG | 0.157404 | 1:-36711661 | MsG0180002322.01.T01:CDS |
| ATATGATCCTTCACTCTATT+TGG | 0.169874 | 1:-36710248 | MsG0180002322.01.T01:CDS |
| TTTACTTACCTTTCAGTTCT+AGG | 0.170050 | 1:-36711766 | MsG0180002322.01.T01:CDS |
| AAGAATGATCCAAATCTTTA+TGG | 0.195262 | 1:-36712306 | MsG0180002322.01.T01:CDS |
| AATAGAACATTGCCATAATT+TGG | 0.209213 | 1:+36713052 | None:intergenic |
| GGAAAATTGCCAAAGGTTAA+AGG | 0.210719 | 1:-36710594 | MsG0180002322.01.T01:CDS |
| CAGTATGTTGAACCAAATTA+TGG | 0.217581 | 1:-36713064 | MsG0180002322.01.T01:CDS |
| CCAATCCAAAACCTCGAAAA+AGG | 0.233899 | 1:+36710431 | None:intergenic |
| TGTGGCACAAATATCAAAAT+TGG | 0.236859 | 1:+36713838 | None:intergenic |
| ATGGATACTGTTTCAATAAC+TGG | 0.238752 | 1:-36712896 | MsG0180002322.01.T01:CDS |
| ATGGAAACATTATGATAAAT+TGG | 0.239209 | 1:+36712282 | None:intergenic |
| GTGTATATCTTTGGAGGTTT+GGG | 0.253031 | 1:-36710083 | MsG0180002322.01.T01:three_prime_UTR |
| TAAAACAGATGAGCCTTCTT+TGG | 0.253536 | 1:+36711785 | None:intergenic |
| TTTCAGGAGCTATGAATTAA+TGG | 0.259030 | 1:-36711945 | MsG0180002322.01.T01:intron |
| AAAGGTGGACTTAAATTTCT+TGG | 0.262697 | 1:+36712737 | None:intergenic |
| AAGAGATTAATATGGCTTAT+TGG | 0.263100 | 1:-36713115 | MsG0180002322.01.T01:CDS |
| TGTGTATATCTTTGGAGGTT+TGG | 0.266492 | 1:-36710084 | MsG0180002322.01.T01:three_prime_UTR |
| ATGCATGCTCCCTGCGAAAA+AGG | 0.268698 | 1:+36710680 | None:intergenic |
| AAATATATTACTTTCTATTC+CGG | 0.268971 | 1:-36710361 | MsG0180002322.01.T01:CDS |
| GCGTTTCGGACGTATGTTTC+AGG | 0.278879 | 1:+36710759 | None:intergenic |
| AATTCAAAGTGACTTTATTA+AGG | 0.287966 | 1:+36710060 | None:intergenic |
| TTCTAGTTGGTTGTCATGAT+TGG | 0.288754 | 1:-36711613 | MsG0180002322.01.T01:CDS |
| AGTTGCATTAACTTTCTCTA+TGG | 0.303467 | 1:+36712919 | None:intergenic |
| GATCCTGACATGAAAATCTT+TGG | 0.308435 | 1:-36710615 | MsG0180002322.01.T01:CDS |
| TGTGAATTTGTGTATATCTT+TGG | 0.312781 | 1:-36710092 | MsG0180002322.01.T01:three_prime_UTR |
| TATCGGTGTTTCATAGTTCA+TGG | 0.337904 | 1:-36709868 | None:intergenic |
| ATTGTACTTTCTGATGATAT+TGG | 0.345521 | 1:+36713004 | None:intergenic |
| TAAATTGGACCATAAAGATT+TGG | 0.346934 | 1:+36712297 | None:intergenic |
| TTACTATTTCCTTTAACCTT+TGG | 0.361607 | 1:+36710585 | None:intergenic |
| AATTCATATACTTATATTGT+TGG | 0.364864 | 1:-36713903 | MsG0180002322.01.T01:five_prime_UTR |
| ACAAGTGATAATAATACTTT+AGG | 0.366564 | 1:+36714021 | None:intergenic |
| AGAGAAAGTTAATGCAACTA+TGG | 0.377379 | 1:-36712915 | MsG0180002322.01.T01:CDS |
| TTTGGATCATTCTTTACAAT+TGG | 0.380163 | 1:+36712315 | None:intergenic |
| CATTCTTTCTGGAACAGAAC+TGG | 0.382167 | 1:-36711650 | MsG0180002322.01.T01:CDS |
| TCAGAACAAAACTCAAACTT+AGG | 0.386028 | 1:+36713790 | None:intergenic |
| AACACTGCAGTTGTAATATT+CGG | 0.387016 | 1:+36712695 | None:intergenic |
| TAGAAACAAAGAGATTAATA+TGG | 0.393063 | 1:-36713123 | MsG0180002322.01.T01:CDS |
| AAATTTCTTGGTGCATTCTC+AGG | 0.395870 | 1:+36712749 | None:intergenic |
| TCCCAATGTTTCAATAGTAT+TGG | 0.397546 | 1:+36710645 | None:intergenic |
| AAAACAGATGAGCCTTCTTT+GGG | 0.402028 | 1:+36711786 | None:intergenic |
| AAGTACTGTATTTGTGCAAA+AGG | 0.404759 | 1:-36710537 | MsG0180002322.01.T01:CDS |
| TTGTTGGAATTTGAGCGTTT+CGG | 0.415130 | 1:+36710745 | None:intergenic |
| AGAAATTTAAGTCCACCTTT+TGG | 0.418043 | 1:-36712734 | MsG0180002322.01.T01:CDS |
| TCTAGTTGGTTGTCATGATT+GGG | 0.419172 | 1:-36711612 | MsG0180002322.01.T01:intron |
| AAAAGATAAAGAACAAATCT+TGG | 0.423927 | 1:-36713746 | MsG0180002322.01.T01:five_prime_UTR |
| AGGTACAGAAGCATTTCCTT+TGG | 0.434501 | 1:-36710302 | MsG0180002322.01.T01:CDS |
| AAGAATGTCTCGCTGCAATC+AGG | 0.443627 | 1:+36711666 | None:intergenic |
| GGTATCTTAGCTTGCTAATG+AGG | 0.446235 | 1:-36710332 | MsG0180002322.01.T01:CDS |
| CAAATTCCAACAAGGGATCT+TGG | 0.446305 | 1:-36710735 | MsG0180002322.01.T01:CDS |
| GCCAATACTATTGAAACATT+GGG | 0.446619 | 1:-36710646 | MsG0180002322.01.T01:CDS |
| TACGCTTGGCAAACTGCATA+AGG | 0.450418 | 1:-36710839 | MsG0180002322.01.T01:CDS |
| CTTGAAGATAAAGTAGGAAC+AGG | 0.452481 | 1:-36710191 | MsG0180002322.01.T01:three_prime_UTR |
| ATCTGTGTCAATGTTGTGTC+TGG | 0.454252 | 1:-36709897 | MsG0180002322.01.T01:three_prime_UTR |
| GTAAAAGAAGGATTTGTCTT+CGG | 0.456224 | 1:-36710798 | MsG0180002322.01.T01:CDS |
| TTCTGTCATTGTTCTGGAGA+AGG | 0.459845 | 1:-36710400 | MsG0180002322.01.T01:CDS |
| AAAATCGCTTCCACGACTCT+TGG | 0.467339 | 1:+36710498 | None:intergenic |
| CTTCTCTATGCAGGCTCCAT+CGG | 0.468402 | 1:-36710871 | MsG0180002322.01.T01:intron |
| GGCCAATACTATTGAAACAT+TGG | 0.469555 | 1:-36710647 | MsG0180002322.01.T01:CDS |
| AAATTATCAGATATAATAAC+CGG | 0.469771 | 1:+36710462 | None:intergenic |
| ACTGTCGTGACTTCTTTAAT+CGG | 0.473806 | 1:+36712536 | None:intergenic |
| GCATAGATTCCGGTGAGAAA+CGG | 0.474338 | 1:+36711866 | None:intergenic |
| TACTTTCTATTCCGGAAAAG+AGG | 0.475633 | 1:-36710353 | MsG0180002322.01.T01:CDS |
| CTTGGTGCATTCTCAGGAGA+AGG | 0.478902 | 1:+36712755 | None:intergenic |
| GAATTTGTGTATATCTTTGG+AGG | 0.484052 | 1:-36710089 | MsG0180002322.01.T01:three_prime_UTR |
| CTGCATTCGCCGTTTCTCAC+CGG | 0.484618 | 1:-36711875 | MsG0180002322.01.T01:CDS |
| TTGCCACCAAGATCCCTTGT+TGG | 0.484877 | 1:+36710729 | None:intergenic |
| TATCAGCAGCACTGTGCCTA+AGG | 0.490760 | 1:-36712579 | MsG0180002322.01.T01:CDS |
| CTCCAGAACAATGACAGAAA+AGG | 0.491004 | 1:+36710404 | None:intergenic |
| TGAATTTCTTGACGCTCCTT+AGG | 0.491776 | 1:+36712563 | None:intergenic |
| AGAAACGGCGAATGCAGTAT+AGG | 0.502439 | 1:+36711881 | None:intergenic |
| TAGAATTCTTTAATATATTG+TGG | 0.504947 | 1:+36713820 | None:intergenic |
| GGAGCATGCATGGTTATGTA+AGG | 0.512586 | 1:-36710668 | MsG0180002322.01.T01:CDS |
| CCATGCTTCGTATCGATCAA+TGG | 0.513815 | 1:-36712483 | MsG0180002322.01.T01:intron |
| GTAAGTAGTAACACCGTTGA+AGG | 0.523261 | 1:-36713866 | MsG0180002322.01.T01:five_prime_UTR |
| ATCGGAAACAAAATTACGCT+TGG | 0.526748 | 1:-36710853 | MsG0180002322.01.T01:CDS |
| TGACAGGATTCTTGTTCCAA+AGG | 0.530529 | 1:+36710286 | None:intergenic |
| CCCTTCAGAAGCATAGATTC+CGG | 0.536340 | 1:+36711856 | None:intergenic |
| TGAAATATATCATACTTGAC+AGG | 0.536585 | 1:+36710270 | None:intergenic |
| TTTAGTCCATCGTCACAGAA+TGG | 0.536684 | 1:-36712629 | MsG0180002322.01.T01:CDS |
| ATGCGAATTCTTCACATACA+AGG | 0.538204 | 1:+36711730 | None:intergenic |
| AGTACTGTATTTGTGCAAAA+GGG | 0.542312 | 1:-36710536 | MsG0180002322.01.T01:CDS |
| ACCGGAATCTATGCTTCTGA+AGG | 0.545542 | 1:-36711857 | MsG0180002322.01.T01:CDS |
| CCGACACTTGTAGAACCAAA+AGG | 0.545542 | 1:+36712719 | None:intergenic |
| AGATAACTTGAAGATAAAGT+AGG | 0.551404 | 1:-36710197 | MsG0180002322.01.T01:three_prime_UTR |
| ATGATTCAAAATTGTGACAT+TGG | 0.552021 | 1:+36712964 | None:intergenic |
| TGCAACGCCGATGTAAAAGA+AGG | 0.554573 | 1:-36710810 | MsG0180002322.01.T01:CDS |
| AGGGTGGTTTATGAAGCTAA+TGG | 0.555086 | 1:-36711837 | MsG0180002322.01.T01:CDS |
| GATATTGAATCAAGTTCTTG+TGG | 0.555739 | 1:+36711705 | None:intergenic |
| TGCTGACTGCTCTAATGTTG+CGG | 0.557576 | 1:-36714057 | MsG0180002322.01.T01:five_prime_UTR |
| GTTGTGTCTGGTATTTCTAT+CGG | 0.562250 | 1:-36709885 | MsG0180002322.01.T01:three_prime_UTR |
| TTGCCACCATTCTGTGACGA+TGG | 0.563406 | 1:+36712623 | None:intergenic |
| TGAGTAATACCTCTTGAACA+TGG | 0.569127 | 1:+36712263 | None:intergenic |
| AAAATTGGAAGTTCCTTCAA+CGG | 0.575938 | 1:+36713853 | None:intergenic |
| AGTTAACTTGAAGTTCAAAG+AGG | 0.578906 | 1:+36713721 | None:intergenic |
| GTCGGCGTCAGTTTCTGTGT+TGG | 0.579142 | 1:+36709966 | None:intergenic |
| ATAATGTTTCCATGTTCAAG+AGG | 0.579284 | 1:-36712272 | MsG0180002322.01.T01:intron |
| TCTTCAAGTTATCTAGCTAG+TGG | 0.584802 | 1:+36710206 | None:intergenic |
| CTTCAAGTGTGCATCACACA+AGG | 0.587890 | 1:-36713681 | MsG0180002322.01.T01:intron |
| AATCTTTGGAAAATTGCCAA+AGG | 0.593584 | 1:-36710601 | MsG0180002322.01.T01:CDS |
| TTGTCACAAAACAAATCTCA+AGG | 0.596759 | 1:-36712854 | MsG0180002322.01.T01:CDS |
| CCATTGATCGATACGAAGCA+TGG | 0.598257 | 1:+36712483 | None:intergenic |
| GTATCTTAGCTTGCTAATGA+GGG | 0.600343 | 1:-36710331 | MsG0180002322.01.T01:CDS |
| TCAACATTTGAAGACCACCT+TGG | 0.608491 | 1:+36712378 | None:intergenic |
| TCACGAGTAAAATATAGATA+CGG | 0.609637 | 1:-36710124 | MsG0180002322.01.T01:three_prime_UTR |
| GAATCTATGCTTCTGAAGGG+TGG | 0.610066 | 1:-36711853 | MsG0180002322.01.T01:CDS |
| TTTCAGTTCTAGGATGCTAG+AGG | 0.611661 | 1:-36711756 | MsG0180002322.01.T01:CDS |
| AAAGTGTTTCACAATCAAAG+TGG | 0.614307 | 1:+36713975 | None:intergenic |
| TCTAGCATCCTAGAACTGAA+AGG | 0.616743 | 1:+36711758 | None:intergenic |
| ATTCCAACAAGGGATCTTGG+TGG | 0.620085 | 1:-36710732 | MsG0180002322.01.T01:CDS |
| AAAGTGTATGTATACAGAGA+AGG | 0.623220 | 1:-36711911 | MsG0180002322.01.T01:CDS |
| AGTGAATAGTCCAAGAGTCG+TGG | 0.626623 | 1:-36710508 | MsG0180002322.01.T01:CDS |
| AGTCCATCGTCACAGAATGG+TGG | 0.628464 | 1:-36712626 | MsG0180002322.01.T01:CDS |
| TATTGTACCAAATAGAGTGA+AGG | 0.643007 | 1:+36710241 | None:intergenic |
| GAAACGCTCAAATTCCAACA+AGG | 0.653680 | 1:-36710743 | MsG0180002322.01.T01:CDS |
| CCGGAATCTATGCTTCTGAA+GGG | 0.655733 | 1:-36711856 | MsG0180002322.01.T01:CDS |
| TCTTTCTGGAACAGAACTGG+AGG | 0.657177 | 1:-36711647 | MsG0180002322.01.T01:CDS |
| AAACGCTCAAATTCCAACAA+GGG | 0.666050 | 1:-36710742 | MsG0180002322.01.T01:CDS |
| TGTTGATCAAGAGTTACTAG+AGG | 0.676250 | 1:-36712361 | MsG0180002322.01.T01:CDS |
| TGACTGCTCTAATGTTGCGG+TGG | 0.679119 | 1:-36714054 | MsG0180002322.01.T01:five_prime_UTR |
| AGTGATTGTATGTAATGTGT+CGG | 0.682523 | 1:+36709948 | None:intergenic |
| ACACTTGTAGAACCAAAAGG+TGG | 0.693355 | 1:+36712722 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATATTCTATTGTT+TGG | - | Chr1:36710642-36710661 | MsG0180002322.01.T01:CDS | 10.0% |
| !!! | AGTAATATATTTTTCAAATT+TGG | + | Chr1:36713573-36713592 | None:intergenic | 10.0% |
| !!! | ATTATTTTTTTTTCTTTTTG+TGG | - | Chr1:36710287-36710306 | MsG0180002322.01.T01:CDS | 10.0% |
| !!! | TTTTTCATAACAAAAAATAT+AGG | + | Chr1:36710360-36710379 | None:intergenic | 10.0% |
| !! | AAATATATTACTTTCTATTC+CGG | - | Chr1:36713581-36713600 | MsG0180002322.01.T01:intron | 15.0% |
| !! | AAATTATCAGATATAATAAC+CGG | + | Chr1:36713483-36713502 | None:intergenic | 15.0% |
| !! | AATTCATATACTTATATTGT+TGG | - | Chr1:36710039-36710058 | MsG0180002322.01.T01:three_prime_UTR | 15.0% |
| !! | TAGAATTCTTTAATATATTG+TGG | + | Chr1:36710125-36710144 | None:intergenic | 15.0% |
| !!! | TTTTTCTTGATTGTTTTATT+TGG | - | Chr1:36710388-36710407 | MsG0180002322.01.T01:CDS | 15.0% |
| !! | AAAAGATAAAGAACAAATCT+TGG | - | Chr1:36710196-36710215 | MsG0180002322.01.T01:three_prime_UTR | 20.0% |
| !! | AATTCAAAGTGACTTTATTA+AGG | + | Chr1:36713885-36713904 | None:intergenic | 20.0% |
| !! | ACAAGTGATAATAATACTTT+AGG | + | Chr1:36709924-36709943 | None:intergenic | 20.0% |
| !! | ATAACCTTAATAACAATTAG+GGG | + | Chr1:36712754-36712773 | None:intergenic | 20.0% |
| !! | ATGGAAACATTATGATAAAT+TGG | + | Chr1:36711663-36711682 | None:intergenic | 20.0% |
| !! | GATAACCTTAATAACAATTA+GGG | + | Chr1:36712755-36712774 | None:intergenic | 20.0% |
| !! | TAGAAACAAAGAGATTAATA+TGG | - | Chr1:36710819-36710838 | MsG0180002322.01.T01:CDS | 20.0% |
| !! | TGATAACCTTAATAACAATT+AGG | + | Chr1:36712756-36712775 | None:intergenic | 20.0% |
| !! | TTATATTCTATTGTTTGGTT+TGG | - | Chr1:36710647-36710666 | MsG0180002322.01.T01:CDS | 20.0% |
| !!! | AACTTGATATTTGATTCTTT+TGG | - | Chr1:36710699-36710718 | MsG0180002322.01.T01:CDS | 20.0% |
| !!! | AGTATATAGGTTTTAAATTG+CGG | + | Chr1:36712548-36712567 | None:intergenic | 20.0% |
| !!! | ATTTAAAACCTATATACTGT+TGG | - | Chr1:36712550-36712569 | MsG0180002322.01.T01:CDS | 20.0% |
| !!! | TATTTCATTTTCTGAGAAAA+TGG | - | Chr1:36710603-36710622 | MsG0180002322.01.T01:CDS | 20.0% |
| !!! | TTGAAGAATTTTAGCAAAAT+GGG | - | Chr1:36710770-36710789 | MsG0180002322.01.T01:CDS | 20.0% |
| ! | AAGAATGATCCAAATCTTTA+TGG | - | Chr1:36711636-36711655 | MsG0180002322.01.T01:CDS | 25.0% |
| ! | AAGAGATTAATATGGCTTAT+TGG | - | Chr1:36710827-36710846 | MsG0180002322.01.T01:CDS | 25.0% |
| ! | AATAGAACATTGCCATAATT+TGG | + | Chr1:36710893-36710912 | None:intergenic | 25.0% |
| ! | ACATGAAACATGATAGTTAT+TGG | - | Chr1:36711927-36711946 | MsG0180002322.01.T01:CDS | 25.0% |
| ! | AGATAACTTGAAGATAAAGT+AGG | - | Chr1:36713745-36713764 | MsG0180002322.01.T01:five_prime_UTR | 25.0% |
| ! | ATGATTCAAAATTGTGACAT+TGG | + | Chr1:36710981-36711000 | None:intergenic | 25.0% |
| ! | ATTCATATTCGTGAAATTTC+AGG | + | Chr1:36711772-36711791 | None:intergenic | 25.0% |
| ! | ATTGTACTTTCTGATGATAT+TGG | + | Chr1:36710941-36710960 | None:intergenic | 25.0% |
| ! | CAGAAAATGAAATATGTACT+TGG | + | Chr1:36710597-36710616 | None:intergenic | 25.0% |
| ! | GACTGAAACTAAAATGTAAT+TGG | + | Chr1:36710575-36710594 | None:intergenic | 25.0% |
| ! | TAAATTGGACCATAAAGATT+TGG | + | Chr1:36711648-36711667 | None:intergenic | 25.0% |
| ! | TCACGAGTAAAATATAGATA+CGG | - | Chr1:36713818-36713837 | MsG0180002322.01.T01:five_prime_UTR | 25.0% |
| ! | TGAAATATATCATACTTGAC+AGG | + | Chr1:36713675-36713694 | None:intergenic | 25.0% |
| ! | TGTGAATTTGTGTATATCTT+TGG | - | Chr1:36713850-36713869 | MsG0180002322.01.T01:five_prime_UTR | 25.0% |
| ! | TTACTATTTCCTTTAACCTT+TGG | + | Chr1:36713360-36713379 | None:intergenic | 25.0% |
| ! | TTTGGATCATTCTTTACAAT+TGG | + | Chr1:36711630-36711649 | None:intergenic | 25.0% |
| !!! | CTTCTATAAGTTATTTTCGA+AGG | + | Chr1:36711723-36711742 | None:intergenic | 25.0% |
| !!! | GTTGAAGAATTTTAGCAAAA+TGG | - | Chr1:36710769-36710788 | MsG0180002322.01.T01:CDS | 25.0% |
| !!! | TACAAAGTGTTGTCAATAAA+CGG | - | Chr1:36712891-36712910 | MsG0180002322.01.T01:CDS | 25.0% |
| !!! | TTAATGTATTTTAGAAGCCA+AGG | - | Chr1:36711547-36711566 | MsG0180002322.01.T01:intron | 25.0% |
| !!! | TTGGTTTTGCATGTTAAATT+TGG | - | Chr1:36710407-36710426 | MsG0180002322.01.T01:CDS | 25.0% |
| AAAATTGGAAGTTCCTTCAA+CGG | + | Chr1:36710092-36710111 | None:intergenic | 30.0% | |
| AAAGTGTATGTATACAGAGA+AGG | - | Chr1:36712031-36712050 | MsG0180002322.01.T01:intron | 30.0% | |
| AACACTGCAGTTGTAATATT+CGG | + | Chr1:36711250-36711269 | None:intergenic | 30.0% | |
| ACTGCCTTAAACTGTTAAAA+CGG | - | Chr1:36711859-36711878 | MsG0180002322.01.T01:CDS | 30.0% | |
| AGAGAAAGTTAATGCAACTA+TGG | - | Chr1:36711027-36711046 | MsG0180002322.01.T01:intron | 30.0% | |
| AGTACTGTATTTGTGCAAAA+GGG | - | Chr1:36713406-36713425 | MsG0180002322.01.T01:intron | 30.0% | |
| AGTGATTGTATGTAATGTGT+CGG | + | Chr1:36713997-36714016 | None:intergenic | 30.0% | |
| AGTTGCATTAACTTTCTCTA+TGG | + | Chr1:36711026-36711045 | None:intergenic | 30.0% | |
| ATAATGTTTCCATGTTCAAG+AGG | - | Chr1:36711670-36711689 | MsG0180002322.01.T01:CDS | 30.0% | |
| ATATGATCCTTCACTCTATT+TGG | - | Chr1:36713694-36713713 | MsG0180002322.01.T01:five_prime_UTR | 30.0% | |
| ATGGATACTGTTTCAATAAC+TGG | - | Chr1:36711046-36711065 | MsG0180002322.01.T01:intron | 30.0% | |
| CAATATAGTTGTGATTGTGA+AGG | - | Chr1:36712493-36712512 | MsG0180002322.01.T01:CDS | 30.0% | |
| CAATTGCAGTGAGAATATAA+AGG | + | Chr1:36712700-36712719 | None:intergenic | 30.0% | |
| CAGTATGTTGAACCAAATTA+TGG | - | Chr1:36710878-36710897 | MsG0180002322.01.T01:intron | 30.0% | |
| GAATTTGTGTATATCTTTGG+AGG | - | Chr1:36713853-36713872 | MsG0180002322.01.T01:five_prime_UTR | 30.0% | |
| GATATTGAATCAAGTTCTTG+TGG | + | Chr1:36712240-36712259 | None:intergenic | 30.0% | |
| GCCAATACTATTGAAACATT+GGG | - | Chr1:36713296-36713315 | MsG0180002322.01.T01:intron | 30.0% | |
| GTAAAAGAAGGATTTGTCTT+CGG | - | Chr1:36713144-36713163 | MsG0180002322.01.T01:CDS | 30.0% | |
| GTGGTATAGAAACAAAACTT+AGG | - | Chr1:36712994-36713013 | MsG0180002322.01.T01:CDS | 30.0% | |
| TAAAAGATACTTCTCTATGC+AGG | - | Chr1:36713062-36713081 | MsG0180002322.01.T01:CDS | 30.0% | |
| TATTGTACCAAATAGAGTGA+AGG | + | Chr1:36713704-36713723 | None:intergenic | 30.0% | |
| TCAGAACAAAACTCAAACTT+AGG | + | Chr1:36710155-36710174 | None:intergenic | 30.0% | |
| TCCCAATGTTTCAATAGTAT+TGG | + | Chr1:36713300-36713319 | None:intergenic | 30.0% | |
| TGTGGCACAAATATCAAAAT+TGG | + | Chr1:36710107-36710126 | None:intergenic | 30.0% | |
| TTATATTCTCACTGCAATTG+TGG | - | Chr1:36712700-36712719 | MsG0180002322.01.T01:CDS | 30.0% | |
| TTGTCACAAAACAAATCTCA+AGG | - | Chr1:36711088-36711107 | MsG0180002322.01.T01:intron | 30.0% | |
| TTTAAAAACCGACATCAAAC+CGG | - | Chr1:36711826-36711845 | MsG0180002322.01.T01:CDS | 30.0% | |
| TTTACTTACCTTTCAGTTCT+AGG | - | Chr1:36712176-36712195 | MsG0180002322.01.T01:intron | 30.0% | |
| TTTCAGGAGCTATGAATTAA+TGG | - | Chr1:36711997-36712016 | MsG0180002322.01.T01:intron | 30.0% | |
| TTTGTCTACGATACACATTA+AGG | + | Chr1:36712434-36712453 | None:intergenic | 30.0% | |
| ! | AAAGAAAAGAGAAAGCACAT+AGG | + | Chr1:36710328-36710347 | None:intergenic | 30.0% |
| ! | AAAGGTGGACTTAAATTTCT+TGG | + | Chr1:36711208-36711227 | None:intergenic | 30.0% |
| ! | AAAGTGTTTCACAATCAAAG+TGG | + | Chr1:36709970-36709989 | None:intergenic | 30.0% |
| ! | AAGTACTGTATTTGTGCAAA+AGG | - | Chr1:36713405-36713424 | MsG0180002322.01.T01:intron | 30.0% |
| ! | AATCTTTGGAAAATTGCCAA+AGG | - | Chr1:36713341-36713360 | MsG0180002322.01.T01:intron | 30.0% |
| ! | ACAATCACAGTATAAGGTTT+TGG | + | Chr1:36712522-36712541 | None:intergenic | 30.0% |
| ! | AGAAATTTAAGTCCACCTTT+TGG | - | Chr1:36711208-36711227 | MsG0180002322.01.T01:intron | 30.0% |
| ! | AGTTAACTTGAAGTTCAAAG+AGG | + | Chr1:36710224-36710243 | None:intergenic | 30.0% |
| ! | CAGTGAGAATATAAAGGTTT+TGG | + | Chr1:36712694-36712713 | None:intergenic | 30.0% |
| ! | CCAAATTTGTCTGTACTTTT+CGG | + | Chr1:36712627-36712646 | None:intergenic | 30.0% |
| ! | GACAAATCCTTCTTTTACAT+CGG | + | Chr1:36713142-36713161 | None:intergenic | 30.0% |
| ! | TGGACTGTAATTTGAAACAA+TGG | - | Chr1:36712726-36712745 | MsG0180002322.01.T01:CDS | 30.0% |
| ! | TTTCCAAAGATTTTCATGTC+AGG | + | Chr1:36713333-36713352 | None:intergenic | 30.0% |
| !! | AAGAATTTTAGCAAAATGGG+TGG | - | Chr1:36710773-36710792 | MsG0180002322.01.T01:CDS | 30.0% |
| !! | TCTCGTATTTTAAATTGCGA+TGG | - | Chr1:36712387-36712406 | MsG0180002322.01.T01:intron | 30.0% |
| !!! | GATTTGTTTTGTGACAATTC+TGG | + | Chr1:36711085-36711104 | None:intergenic | 30.0% |
| !!! | GTTTTGTTTCTATACCACAA+AGG | + | Chr1:36712992-36713011 | None:intergenic | 30.0% |
| AAAACAGATGAGCCTTCTTT+GGG | + | Chr1:36712159-36712178 | None:intergenic | 35.0% | |
| AAACGCTCAAATTCCAACAA+GGG | - | Chr1:36713200-36713219 | MsG0180002322.01.T01:five_prime_UTR | 35.0% | |
| ACCTATATACTGTTGGAACT+TGG | - | Chr1:36712557-36712576 | MsG0180002322.01.T01:CDS | 35.0% | |
| ACTGTCGTGACTTCTTTAAT+CGG | + | Chr1:36711409-36711428 | None:intergenic | 35.0% | |
| AGTGTATCACAGAACATTCA+CGG | + | Chr1:36712865-36712884 | None:intergenic | 35.0% | |
| ATAACAACTGCATTTGTGGT+CGG | + | Chr1:36712655-36712674 | None:intergenic | 35.0% | |
| ATCGGAAACAAAATTACGCT+TGG | - | Chr1:36713089-36713108 | MsG0180002322.01.T01:CDS | 35.0% | |
| ATGCGAATTCTTCACATACA+AGG | + | Chr1:36712215-36712234 | None:intergenic | 35.0% | |
| ATGTTGTCAATCACATATCG+CGG | + | Chr1:36712967-36712986 | None:intergenic | 35.0% | |
| CAATCCAAAACCTCGAAAAA+GGG | + | Chr1:36713513-36713532 | None:intergenic | 35.0% | |
| CAGTTGTTATGTAGTTGTGA+AGG | - | Chr1:36712665-36712684 | MsG0180002322.01.T01:CDS | 35.0% | |
| CATGTTTCATGTAACCACTA+TGG | + | Chr1:36711919-36711938 | None:intergenic | 35.0% | |
| CTACATAACAACTGCATTTG+TGG | + | Chr1:36712659-36712678 | None:intergenic | 35.0% | |
| CTGCCTTAAACTGTTAAAAC+GGG | - | Chr1:36711860-36711879 | MsG0180002322.01.T01:CDS | 35.0% | |
| CTTGAAGATAAAGTAGGAAC+AGG | - | Chr1:36713751-36713770 | MsG0180002322.01.T01:five_prime_UTR | 35.0% | |
| CTTGCTAATGAGGGTAAAAA+AGG | - | Chr1:36713620-36713639 | MsG0180002322.01.T01:intron | 35.0% | |
| GATCCTGACATGAAAATCTT+TGG | - | Chr1:36713327-36713346 | MsG0180002322.01.T01:intron | 35.0% | |
| GGAAAATTGCCAAAGGTTAA+AGG | - | Chr1:36713348-36713367 | MsG0180002322.01.T01:intron | 35.0% | |
| GGCCAATACTATTGAAACAT+TGG | - | Chr1:36713295-36713314 | MsG0180002322.01.T01:intron | 35.0% | |
| TAAAACAGATGAGCCTTCTT+TGG | + | Chr1:36712160-36712179 | None:intergenic | 35.0% | |
| TACTTTCTATTCCGGAAAAG+AGG | - | Chr1:36713589-36713608 | MsG0180002322.01.T01:intron | 35.0% | |
| TAGACAAATGCTGACAAATG+TGG | - | Chr1:36712446-36712465 | MsG0180002322.01.T01:intron | 35.0% | |
| TCCAAGTTCCAACAGTATAT+AGG | + | Chr1:36712561-36712580 | None:intergenic | 35.0% | |
| TCCTGAAAATTACAGTCACA+TGG | + | Chr1:36711985-36712004 | None:intergenic | 35.0% | |
| TCTAGTTGGTTGTCATGATT+GGG | - | Chr1:36712330-36712349 | MsG0180002322.01.T01:CDS | 35.0% | |
| TGAGTAATACCTCTTGAACA+TGG | + | Chr1:36711682-36711701 | None:intergenic | 35.0% | |
| TGTCACTAACCAAACAACAA+AGG | + | Chr1:36710449-36710468 | None:intergenic | 35.0% | |
| TGTTACCAAAAACCCAAAGA+AGG | - | Chr1:36712144-36712163 | MsG0180002322.01.T01:intron | 35.0% | |
| TGTTGATCAAGAGTTACTAG+AGG | - | Chr1:36711581-36711600 | MsG0180002322.01.T01:intron | 35.0% | |
| TTCATGTAACCACTATGGTT+CGG | + | Chr1:36711914-36711933 | None:intergenic | 35.0% | |
| TTGTTGGAATTTGAGCGTTT+CGG | + | Chr1:36713200-36713219 | None:intergenic | 35.0% | |
| ! | AAATTTCTTGGTGCATTCTC+AGG | + | Chr1:36711196-36711215 | None:intergenic | 35.0% |
| ! | AAGCTAAGATACCTCTTTTC+CGG | + | Chr1:36713603-36713622 | None:intergenic | 35.0% |
| ! | ACTCGAACACACTTTTAATC+TGG | + | Chr1:36713922-36713941 | None:intergenic | 35.0% |
| ! | ATCCTTTTCTGTCATTGTTC+TGG | - | Chr1:36713536-36713555 | MsG0180002322.01.T01:intron | 35.0% |
| ! | CCGAAAAGTACAGACAAATT+TGG | - | Chr1:36712624-36712643 | MsG0180002322.01.T01:CDS | 35.0% |
| ! | GACTTTCTCTGCATTTTCTT+AGG | - | Chr1:36710549-36710568 | MsG0180002322.01.T01:CDS | 35.0% |
| ! | GATTTTCTACGAATGTGTTC+CGG | - | Chr1:36713461-36713480 | MsG0180002322.01.T01:intron | 35.0% |
| ! | GGAACCCCTAATTGTTATTA+AGG | - | Chr1:36712747-36712766 | MsG0180002322.01.T01:CDS | 35.0% |
| ! | GTGTATATCTTTGGAGGTTT+GGG | - | Chr1:36713859-36713878 | MsG0180002322.01.T01:five_prime_UTR | 35.0% |
| ! | GTTGTGTCTGGTATTTCTAT+CGG | - | Chr1:36714057-36714076 | MsG0180002322.01.T01:five_prime_UTR | 35.0% |
| ! | TACAACTGCAGTGTTTTCAA+AGG | - | Chr1:36711255-36711274 | MsG0180002322.01.T01:intron | 35.0% |
| ! | TCCATGTGACTGTAATTTTC+AGG | - | Chr1:36711981-36712000 | MsG0180002322.01.T01:intron | 35.0% |
| ! | TCTTCAAGTTATCTAGCTAG+TGG | + | Chr1:36713739-36713758 | None:intergenic | 35.0% |
| ! | TGATCGCAATTTAAAACCTG+AGG | + | Chr1:36712586-36712605 | None:intergenic | 35.0% |
| ! | TGTGTATATCTTTGGAGGTT+TGG | - | Chr1:36713858-36713877 | MsG0180002322.01.T01:five_prime_UTR | 35.0% |
| ! | TTCTAGTTGGTTGTCATGAT+TGG | - | Chr1:36712329-36712348 | MsG0180002322.01.T01:CDS | 35.0% |
| !! | AAGCGTAATTTTGTTTCCGA+TGG | + | Chr1:36713090-36713109 | None:intergenic | 35.0% |
| !! | AGAATTGAGCCTTTGTTGTT+TGG | - | Chr1:36710437-36710456 | MsG0180002322.01.T01:CDS | 35.0% |
| !! | AGTCCCGTTTTAACAGTTTA+AGG | + | Chr1:36711866-36711885 | None:intergenic | 35.0% |
| !! | ATGTATTTTAGAAGCCAAGG+TGG | - | Chr1:36711550-36711569 | MsG0180002322.01.T01:intron | 35.0% |
| !! | CGTATTTTAAATTGCGATGG+CGG | - | Chr1:36712390-36712409 | MsG0180002322.01.T01:intron | 35.0% |
| !! | GTATCTTAGCTTGCTAATGA+GGG | - | Chr1:36713611-36713630 | MsG0180002322.01.T01:intron | 35.0% |
| !!! | CAGGTTTTAAATTGCGATCA+CGG | - | Chr1:36712586-36712605 | MsG0180002322.01.T01:CDS | 35.0% |
| !!! | CTTTTTCGAGGTTTTGGATT+GGG | - | Chr1:36713512-36713531 | MsG0180002322.01.T01:intron | 35.0% |
| !!! | GTTATTTTGGTGGTCAATCA+CGG | + | Chr1:36711892-36711911 | None:intergenic | 35.0% |
| !!! | TCTTTTGGTGTTTTTTGCAG+AGG | - | Chr1:36710714-36710733 | MsG0180002322.01.T01:CDS | 35.0% |
| ACACTTGTAGAACCAAAAGG+TGG | + | Chr1:36711223-36711242 | None:intergenic | 40.0% | |
| AGGGTGGTTTATGAAGCTAA+TGG | - | Chr1:36712105-36712124 | MsG0180002322.01.T01:intron | 40.0% | |
| ATAGCAGCACTATAGCATAG+CGG | - | Chr1:36712827-36712846 | MsG0180002322.01.T01:CDS | 40.0% | |
| ATCTGTGTCAATGTTGTGTC+TGG | - | Chr1:36714045-36714064 | MsG0180002322.01.T01:five_prime_UTR | 40.0% | |
| CAAATTCCAACAAGGGATCT+TGG | - | Chr1:36713207-36713226 | MsG0180002322.01.T01:five_prime_UTR | 40.0% | |
| CCAAAATAACCGAACCATAG+TGG | - | Chr1:36711902-36711921 | MsG0180002322.01.T01:CDS | 40.0% | |
| CCAATCCAAAACCTCGAAAA+AGG | + | Chr1:36713514-36713533 | None:intergenic | 40.0% | |
| CGATCACGGTTTCAGATATT+TGG | - | Chr1:36712600-36712619 | MsG0180002322.01.T01:CDS | 40.0% | |
| CGGTTCACAATCACAGTATA+AGG | + | Chr1:36712528-36712547 | None:intergenic | 40.0% | |
| CTCCAGAACAATGACAGAAA+AGG | + | Chr1:36713541-36713560 | None:intergenic | 40.0% | |
| GAAACGCTCAAATTCCAACA+AGG | - | Chr1:36713199-36713218 | MsG0180002322.01.T01:five_prime_UTR | 40.0% | |
| GATTGACAACATTGCCTTTG+TGG | - | Chr1:36712975-36712994 | MsG0180002322.01.T01:CDS | 40.0% | |
| GTAAGTAGTAACACCGTTGA+AGG | - | Chr1:36710076-36710095 | MsG0180002322.01.T01:three_prime_UTR | 40.0% | |
| TCAACATTTGAAGACCACCT+TGG | + | Chr1:36711567-36711586 | None:intergenic | 40.0% | |
| TCTAGCATCCTAGAACTGAA+AGG | + | Chr1:36712187-36712206 | None:intergenic | 40.0% | |
| TGAATTTCTTGACGCTCCTT+AGG | + | Chr1:36711382-36711401 | None:intergenic | 40.0% | |
| TGACAGGATTCTTGTTCCAA+AGG | + | Chr1:36713659-36713678 | None:intergenic | 40.0% | |
| TTTAGTCCATCGTCACAGAA+TGG | - | Chr1:36711313-36711332 | MsG0180002322.01.T01:intron | 40.0% | |
| ! | GTTAGTGACAAGTCACGTTT+TGG | - | Chr1:36710459-36710478 | MsG0180002322.01.T01:CDS | 40.0% |
| !! | AGGTACAGAAGCATTTCCTT+TGG | - | Chr1:36713640-36713659 | MsG0180002322.01.T01:intron | 40.0% |
| !! | ATGAGCCTTCTTTGGGTTTT+TGG | + | Chr1:36712152-36712171 | None:intergenic | 40.0% |
| !! | CATTCTTTCTGGAACAGAAC+TGG | - | Chr1:36712292-36712311 | MsG0180002322.01.T01:CDS | 40.0% |
| !! | GGTATCTTAGCTTGCTAATG+AGG | - | Chr1:36713610-36713629 | MsG0180002322.01.T01:intron | 40.0% |
| !! | TTCTGTCATTGTTCTGGAGA+AGG | - | Chr1:36713542-36713561 | MsG0180002322.01.T01:intron | 40.0% |
| !! | TTTCAGTTCTAGGATGCTAG+AGG | - | Chr1:36712186-36712205 | MsG0180002322.01.T01:intron | 40.0% |
| !!! | ACAACATTAGCCTTTTTCGC+AGG | - | Chr1:36713252-36713271 | MsG0180002322.01.T01:intron | 40.0% |
| !!! | CAACATTAGCCTTTTTCGCA+GGG | - | Chr1:36713253-36713272 | MsG0180002322.01.T01:intron | 40.0% |
| !!! | CCACTATGGTTCGGTTATTT+TGG | + | Chr1:36711905-36711924 | None:intergenic | 40.0% |
| !!! | CCTTTTGGTTCTACAAGTGT+CGG | - | Chr1:36711223-36711242 | MsG0180002322.01.T01:intron | 40.0% |
| !!! | CCTTTTTCGAGGTTTTGGAT+TGG | - | Chr1:36713511-36713530 | MsG0180002322.01.T01:intron | 40.0% |
| !!! | CTATGGTTCGGTTATTTTGG+TGG | + | Chr1:36711902-36711921 | None:intergenic | 40.0% |
| !!! | GGTGCTGATCATTTTCTAGT+TGG | - | Chr1:36712316-36712335 | MsG0180002322.01.T01:CDS | 40.0% |
| AAAATCGCTTCCACGACTCT+TGG | + | Chr1:36713447-36713466 | None:intergenic | 45.0% | |
| AAGAATGTCTCGCTGCAATC+AGG | + | Chr1:36712279-36712298 | None:intergenic | 45.0% | |
| ACCGGAATCTATGCTTCTGA+AGG | - | Chr1:36712085-36712104 | MsG0180002322.01.T01:intron | 45.0% | |
| AGAAACGGCGAATGCAGTAT+AGG | + | Chr1:36712064-36712083 | None:intergenic | 45.0% | |
| AGCGTAGCATTGTAGCATAG+CGG | - | Chr1:36712918-36712937 | MsG0180002322.01.T01:CDS | 45.0% | |
| AGTGAATAGTCCAAGAGTCG+TGG | - | Chr1:36713434-36713453 | MsG0180002322.01.T01:intron | 45.0% | |
| ATTCCAACAAGGGATCTTGG+TGG | - | Chr1:36713210-36713229 | MsG0180002322.01.T01:five_prime_UTR | 45.0% | |
| CCATTGATCGATACGAAGCA+TGG | + | Chr1:36711462-36711481 | None:intergenic | 45.0% | |
| CCGACACTTGTAGAACCAAA+AGG | + | Chr1:36711226-36711245 | None:intergenic | 45.0% | |
| CCGGAATCTATGCTTCTGAA+GGG | - | Chr1:36712086-36712105 | MsG0180002322.01.T01:intron | 45.0% | |
| CTTCAAGTGTGCATCACACA+AGG | - | Chr1:36710261-36710280 | MsG0180002322.01.T01:CDS | 45.0% | |
| GACTGCAATTGTAGTCGCAT+TGG | + | Chr1:36712472-36712491 | None:intergenic | 45.0% | |
| GCATAGATTCCGGTGAGAAA+CGG | + | Chr1:36712079-36712098 | None:intergenic | 45.0% | |
| GGAGCATGCATGGTTATGTA+AGG | - | Chr1:36713274-36713293 | MsG0180002322.01.T01:intron | 45.0% | |
| TAAGGCAGTTGAATCCTGAC+CGG | + | Chr1:36711848-36711867 | None:intergenic | 45.0% | |
| TACGCTTGGCAAACTGCATA+AGG | - | Chr1:36713103-36713122 | MsG0180002322.01.T01:CDS | 45.0% | |
| TCCAAAACCTCGAAAAAGGG+TGG | + | Chr1:36713510-36713529 | None:intergenic | 45.0% | |
| TCTCACTGCAATTGTGGTTG+TGG | - | Chr1:36712706-36712725 | MsG0180002322.01.T01:CDS | 45.0% | |
| TGCAACGCCGATGTAAAAGA+AGG | - | Chr1:36713132-36713151 | MsG0180002322.01.T01:CDS | 45.0% | |
| TTGCAGCGAGACATTCTTTC+TGG | - | Chr1:36712281-36712300 | MsG0180002322.01.T01:CDS | 45.0% | |
| ! | CCATGCTTCGTATCGATCAA+TGG | - | Chr1:36711459-36711478 | MsG0180002322.01.T01:intron | 45.0% |
| ! | CCCTTCAGAAGCATAGATTC+CGG | + | Chr1:36712089-36712108 | None:intergenic | 45.0% |
| ! | GAATCTATGCTTCTGAAGGG+TGG | - | Chr1:36712089-36712108 | MsG0180002322.01.T01:intron | 45.0% |
| ! | TGCTGACTGCTCTAATGTTG+CGG | - | Chr1:36709885-36709904 | MsG0180002322.01.T01:three_prime_UTR | 45.0% |
| ! | TTTTACATCGGCGTTGCAGA+GGG | + | Chr1:36713130-36713149 | None:intergenic | 45.0% |
| !! | AATCCTGACCGGTTTGATGT+CGG | + | Chr1:36711837-36711856 | None:intergenic | 45.0% |
| !! | TCTTTCTGGAACAGAACTGG+AGG | - | Chr1:36712295-36712314 | MsG0180002322.01.T01:CDS | 45.0% |
| !! | TTTTGTGCCACCCTTTTTCG+AGG | - | Chr1:36713500-36713519 | MsG0180002322.01.T01:intron | 45.0% |
| AAACCGACATCAAACCGGTC+AGG | - | Chr1:36711831-36711850 | MsG0180002322.01.T01:CDS | 50.0% | |
| AGTCCATCGTCACAGAATGG+TGG | - | Chr1:36711316-36711335 | MsG0180002322.01.T01:intron | 50.0% | |
| ATGCATGCTCCCTGCGAAAA+AGG | + | Chr1:36713265-36713284 | None:intergenic | 50.0% | |
| CTTCTCTATGCAGGCTCCAT+CGG | - | Chr1:36713071-36713090 | MsG0180002322.01.T01:CDS | 50.0% | |
| GCGTTTCGGACGTATGTTTC+AGG | + | Chr1:36713186-36713205 | None:intergenic | 50.0% | |
| TATCAGCAGCACTGTGCCTA+AGG | - | Chr1:36711363-36711382 | MsG0180002322.01.T01:intron | 50.0% | |
| TGACTGCTCTAATGTTGCGG+TGG | - | Chr1:36709888-36709907 | MsG0180002322.01.T01:three_prime_UTR | 50.0% | |
| TGTTGGAACTTGGAAGCCTC+AGG | - | Chr1:36712567-36712586 | MsG0180002322.01.T01:CDS | 50.0% | |
| TTGCCACCAAGATCCCTTGT+TGG | + | Chr1:36713216-36713235 | None:intergenic | 50.0% | |
| TTGCCACCATTCTGTGACGA+TGG | + | Chr1:36711322-36711341 | None:intergenic | 50.0% | |
| ! | CTTGGTGCATTCTCAGGAGA+AGG | + | Chr1:36711190-36711209 | None:intergenic | 50.0% |
| ! | CTTTTACATCGGCGTTGCAG+AGG | + | Chr1:36713131-36713150 | None:intergenic | 50.0% |
| !! | TTTTTCGCAGGGAGCATGCA+TGG | - | Chr1:36713264-36713283 | MsG0180002322.01.T01:intron | 50.0% |
| !!! | GCCACCCTTTTTCGAGGTTT+TGG | - | Chr1:36713506-36713525 | MsG0180002322.01.T01:intron | 50.0% |
| CTGCATTCGCCGTTTCTCAC+CGG | - | Chr1:36712067-36712086 | MsG0180002322.01.T01:intron | 55.0% | |
| GTCGGCGTCAGTTTCTGTGT+TGG | + | Chr1:36713979-36713998 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 36709870 | 36714094 | 36709870 | ID=MsG0180002322.01;Name=MsG0180002322.01 |
| Chr1 | mRNA | 36709870 | 36714094 | 36709870 | ID=MsG0180002322.01.T01;Parent=MsG0180002322.01;Name=MsG0180002322.01.T01;_AED=0.47;_eAED=0.47;_QI=467|1|1|1|0.5|0.6|5|348|611 |
| Chr1 | exon | 36713682 | 36714094 | 36713682 | ID=MsG0180002322.01.T01:exon:420;Parent=MsG0180002322.01.T01 |
| Chr1 | exon | 36712484 | 36713230 | 36712484 | ID=MsG0180002322.01.T01:exon:421;Parent=MsG0180002322.01.T01 |
| Chr1 | exon | 36712273 | 36712403 | 36712273 | ID=MsG0180002322.01.T01:exon:422;Parent=MsG0180002322.01.T01 |
| Chr1 | exon | 36711613 | 36711961 | 36711613 | ID=MsG0180002322.01.T01:exon:423;Parent=MsG0180002322.01.T01 |
| Chr1 | exon | 36709870 | 36710880 | 36709870 | ID=MsG0180002322.01.T01:exon:424;Parent=MsG0180002322.01.T01 |
| Chr1 | five_prime_UTR | 36713682 | 36714094 | 36713682 | ID=MsG0180002322.01.T01:five_prime_utr;Parent=MsG0180002322.01.T01 |
| Chr1 | five_prime_UTR | 36713177 | 36713230 | 36713177 | ID=MsG0180002322.01.T01:five_prime_utr;Parent=MsG0180002322.01.T01 |
| Chr1 | CDS | 36712484 | 36713176 | 36712484 | ID=MsG0180002322.01.T01:cds;Parent=MsG0180002322.01.T01 |
| Chr1 | CDS | 36712273 | 36712403 | 36712273 | ID=MsG0180002322.01.T01:cds;Parent=MsG0180002322.01.T01 |
| Chr1 | CDS | 36711613 | 36711961 | 36711613 | ID=MsG0180002322.01.T01:cds;Parent=MsG0180002322.01.T01 |
| Chr1 | CDS | 36710218 | 36710880 | 36710218 | ID=MsG0180002322.01.T01:cds;Parent=MsG0180002322.01.T01 |
| Chr1 | three_prime_UTR | 36709870 | 36710217 | 36709870 | ID=MsG0180002322.01.T01:three_prime_utr;Parent=MsG0180002322.01.T01 |
| Gene Sequence |
| Protein sequence |
