AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000879.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000879.01.T01 MTR_1g026830 96.422 587 21 0 1 587 5 591 0.0 1163
MsG0180000879.01.T01 MTR_1g095810 94.128 579 33 1 10 587 11 589 0.0 1116
MsG0180000879.01.T01 MTR_2g100230 40.431 418 236 5 113 527 66 473 1.51e-99 311
MsG0180000879.01.T01 MTR_4g105100 41.147 401 223 5 130 527 189 579 6.83e-93 298
MsG0180000879.01.T01 MTR_3g083690 38.741 413 227 6 132 527 134 537 9.45e-93 297
MsG0180000879.01.T01 MTR_3g467550 37.376 404 231 5 107 496 77 472 1.14e-91 293
MsG0180000879.01.T01 MTR_7g109720 42.619 420 225 8 113 527 202 610 2.72e-91 298
MsG0180000879.01.T01 MTR_6g005550 39.416 411 231 7 122 527 144 541 1.23e-90 295
MsG0180000879.01.T01 MTR_1g054630 39.312 407 226 6 132 524 143 542 1.31e-90 291
MsG0180000879.01.T01 MTR_3g467550 37.250 400 206 6 107 496 77 441 3.09e-87 280
MsG0180000879.01.T01 MTR_4g134170 35.981 428 249 4 116 525 260 680 1.46e-86 283
MsG0180000879.01.T01 MTR_4g114120 38.049 410 230 6 134 526 131 533 4.67e-85 279
MsG0180000879.01.T01 MTR_6g005320 35.880 432 250 5 112 525 218 640 5.90e-85 278
MsG0180000879.01.T01 MTR_2g032630 39.806 412 230 7 121 527 474 872 1.31e-82 281
MsG0180000879.01.T01 MTR_2g007000 38.863 422 239 6 113 527 474 883 4.32e-82 279
MsG0180000879.01.T01 MTR_3g467550 35.356 379 223 5 107 471 77 447 1.99e-77 253
MsG0180000879.01.T01 MTR_5g027840 37.468 395 230 8 134 521 95 479 1.96e-76 252
MsG0180000879.01.T01 MTR_4g105100 40.181 331 186 4 130 457 189 510 3.22e-70 236
MsG0180000879.01.T01 MTR_5g090120 37.778 360 201 8 153 504 91 435 1.68e-63 219
MsG0180000879.01.T01 MTR_4g079320 33.498 406 246 7 144 539 20 411 3.15e-63 222
MsG0180000879.01.T01 MTR_7g056830 33.514 370 222 6 141 503 8 360 1.91e-62 213
MsG0180000879.01.T01 MTR_6g082080 33.514 370 222 6 141 503 8 360 2.05e-62 213
MsG0180000879.01.T01 MTR_3g449250 36.872 358 203 8 153 502 100 442 4.82e-62 214
MsG0180000879.01.T01 MTR_3g449250 36.872 358 203 8 153 502 100 442 8.76e-62 214
MsG0180000879.01.T01 MTR_6g033070 31.308 428 277 9 121 544 119 533 2.14e-61 212
MsG0180000879.01.T01 MTR_3g049990 35.342 365 216 6 143 500 152 503 4.92e-60 213
MsG0180000879.01.T01 MTR_7g100820 32.771 415 250 8 123 527 110 505 3.47e-59 208
MsG0180000879.01.T01 MTR_2g041140 34.072 361 223 4 143 498 141 491 3.76e-57 205
MsG0180000879.01.T01 MTR_2g039960 31.362 389 248 8 143 528 41 413 2.30e-56 196
MsG0180000879.01.T01 MTR_4g125970 31.362 389 248 8 143 528 41 413 4.15e-56 195
MsG0180000879.01.T01 MTR_4g125970 31.362 389 248 8 143 528 58 430 1.04e-55 194
MsG0180000879.01.T01 MTR_2g066050 33.333 369 217 7 143 500 53 403 1.18e-55 196
MsG0180000879.01.T01 MTR_2g438110 31.378 392 250 7 140 528 31 406 2.79e-55 192
MsG0180000879.01.T01 MTR_2g099620 30.769 390 251 8 142 528 24 397 2.28e-54 190
MsG0180000879.01.T01 MTR_2g099620 30.769 390 251 8 142 528 40 413 3.54e-54 189
MsG0180000879.01.T01 MTR_8g018400 30.077 389 253 8 143 528 41 413 2.05e-53 187
MsG0180000879.01.T01 MTR_4g112340 35.329 334 197 8 161 486 115 437 5.81e-53 190
MsG0180000879.01.T01 MTR_2g055850 31.044 364 236 6 140 497 88 442 3.29e-52 188
MsG0180000879.01.T01 MTR_3g071620 32.011 378 225 11 144 497 15 384 1.38e-50 184
MsG0180000879.01.T01 MTR_7g076820 28.306 431 279 7 100 528 118 520 1.95e-50 182
MsG0180000879.01.T01 MTR_7g076800 29.293 396 262 6 135 528 132 511 6.53e-50 181
MsG0180000879.01.T01 MTR_2g043360 28.125 416 219 8 161 503 60 468 8.33e-50 182
MsG0180000879.01.T01 MTR_7g076830 28.211 436 273 8 100 528 111 513 9.45e-50 180
MsG0180000879.01.T01 MTR_4g059460 29.024 410 211 9 161 497 63 465 1.15e-49 182
MsG0180000879.01.T01 MTR_6g056080 33.333 369 222 9 135 493 98 452 1.62e-49 182
MsG0180000879.01.T01 MTR_8g027780 34.239 368 214 9 144 491 102 461 3.64e-49 180
MsG0180000879.01.T01 MTR_1g102410 32.663 398 212 10 130 493 34 409 1.37e-48 179
MsG0180000879.01.T01 MTR_8g027775 32.642 386 227 11 131 491 80 457 7.52e-48 176
MsG0180000879.01.T01 MTR_4g010565 29.688 384 239 10 144 512 125 492 5.07e-46 169
MsG0180000879.01.T01 MTR_3g107420 29.805 359 235 7 144 498 48 393 5.35e-45 165
MsG0180000879.01.T01 MTR_1g012420 29.521 376 243 8 132 498 31 393 1.84e-44 164
MsG0180000879.01.T01 MTR_2g063080 27.685 419 246 7 135 501 101 514 1.06e-43 164
MsG0180000879.01.T01 MTR_6g039840 29.167 384 232 9 140 499 107 474 4.90e-43 164
MsG0180000879.01.T01 MTR_8g027770 33.240 358 206 9 154 491 212 556 3.13e-42 161
MsG0180000879.01.T01 MTR_5g092560 32.471 348 218 8 162 502 95 432 3.23e-41 159
MsG0180000879.01.T01 MTR_8g097000 32.778 360 217 10 154 497 299 649 4.99e-41 159
MsG0180000879.01.T01 MTR_1g061970 30.536 429 236 17 132 519 68 475 5.94e-41 155
MsG0180000879.01.T01 MTR_7g057250 28.125 448 244 12 144 521 164 603 4.84e-40 156
MsG0180000879.01.T01 MTR_8g027780 32.653 343 203 9 144 466 102 436 1.01e-38 148
MsG0180000879.01.T01 MTR_4g068990 30.563 373 238 11 139 503 73 432 4.59e-37 147
MsG0180000879.01.T01 MTR_1g083130 26.764 411 242 8 142 504 25 424 2.44e-36 144
MsG0180000879.01.T01 MTR_4g112320 34.874 238 144 6 257 486 21 255 5.85e-35 136
MsG0180000879.01.T01 MTR_3g118120 26.684 386 246 11 140 497 129 505 5.03e-34 136
MsG0180000879.01.T01 MTR_2g043360 27.329 322 161 6 255 503 29 350 4.38e-33 133
MsG0180000879.01.T01 MTR_4g049910 29.474 380 215 10 144 497 56 408 5.74e-33 132
MsG0180000879.01.T01 MTR_0915s0010 29.693 293 188 5 160 450 6 282 2.55e-32 126
MsG0180000879.01.T01 MTR_4g131750 27.586 435 245 14 135 528 74 479 7.87e-30 123
MsG0180000879.01.T01 MTR_1g046570 29.496 278 180 8 262 528 126 398 2.90e-29 120
MsG0180000879.01.T01 MTR_6g039840 29.276 304 176 8 219 499 11 298 5.06e-29 121
MsG0180000879.01.T01 MTR_5g069330 25.275 364 250 10 141 498 5 352 1.46e-28 118
MsG0180000879.01.T01 MTR_5g069330 25.275 364 250 10 141 498 1 348 1.61e-28 118
MsG0180000879.01.T01 MTR_4g459350 32.512 203 111 4 161 344 60 255 5.64e-26 108
MsG0180000879.01.T01 MTR_8g018370 24.100 361 230 7 173 528 3 324 7.21e-25 106
MsG0180000879.01.T01 MTR_4g077370 35.238 210 109 7 143 344 250 440 2.39e-24 106
MsG0180000879.01.T01 MTR_4g077370 32.227 211 99 6 143 344 2 177 7.67e-19 89.7
MsG0180000879.01.T01 MTR_5g092560 31.401 207 136 4 302 502 15 221 2.03e-23 104
MsG0180000879.01.T01 MTR_8g042690 25.429 350 222 10 166 497 41 369 4.87e-22 99.8
MsG0180000879.01.T01 MTR_4g068990 30.769 208 137 5 302 503 15 221 5.10e-21 97.1
MsG0180000879.01.T01 MTR_3g107420 28.780 205 131 5 142 344 46 237 5.26e-20 91.7
MsG0180000879.01.T01 MTR_5g077690 25.916 382 216 12 180 501 70 444 7.20e-20 93.6
MsG0180000879.01.T01 MTR_8g032230 35.366 164 92 4 141 303 8 158 2.71e-19 85.9
MsG0180000879.01.T01 MTR_1g022305 25.439 342 177 11 165 502 26 293 4.64e-19 90.5
MsG0180000879.01.T01 MTR_3g063040 24.507 355 230 11 151 494 2 329 3.18e-13 73.2
MsG0180000879.01.T01 MTR_8g062720 25.248 202 133 4 318 503 345 544 8.53e-12 68.6
MsG0180000879.01.T01 MTR_8g080160 31.356 118 76 1 386 498 480 597 1.94e-11 67.8
MsG0180000879.01.T01 MTR_0427s0010 27.358 212 117 6 312 506 1 192 3.96e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000879.01.T01 AT5G51280 83.106 586 98 1 2 587 7 591 0.0 1011
MsG0180000879.01.T01 AT4G33370 81.092 513 97 0 75 587 30 542 0.0 873
MsG0180000879.01.T01 AT1G55150 39.277 415 239 5 116 527 73 477 5.19e-99 310
MsG0180000879.01.T01 AT1G55150 39.277 415 239 5 116 527 98 502 2.79e-98 309
MsG0180000879.01.T01 AT5G63120 41.190 420 232 7 113 528 136 544 4.05e-97 308
MsG0180000879.01.T01 AT2G47330 41.020 451 249 8 83 527 168 607 3.36e-93 303
MsG0180000879.01.T01 AT3G58510 38.519 405 230 6 132 524 141 538 9.16e-93 297
MsG0180000879.01.T01 AT3G58510 38.519 405 230 6 132 524 141 538 9.16e-93 297
MsG0180000879.01.T01 AT3G58510 38.519 405 230 6 132 524 141 538 9.16e-93 297
MsG0180000879.01.T01 AT3G58570 38.875 409 229 7 130 524 134 535 3.75e-92 297
MsG0180000879.01.T01 AT2G42520 37.653 409 234 6 130 524 147 548 6.71e-91 293
MsG0180000879.01.T01 AT2G42520 37.653 409 234 6 130 524 147 548 6.71e-91 293
MsG0180000879.01.T01 AT2G42520 37.653 409 234 6 130 524 147 548 6.71e-91 293
MsG0180000879.01.T01 AT2G33730 34.023 532 292 12 35 525 194 707 1.20e-88 290
MsG0180000879.01.T01 AT1G20920 37.915 422 247 5 113 529 162 573 6.19e-88 290
MsG0180000879.01.T01 AT1G20920 38.152 422 246 5 113 529 500 911 3.36e-86 291
MsG0180000879.01.T01 AT1G20920 38.152 422 246 5 113 529 500 911 3.36e-86 291
MsG0180000879.01.T01 AT1G20920 38.152 422 246 5 113 529 500 911 3.36e-86 291
MsG0180000879.01.T01 AT1G20920 38.152 422 246 5 113 529 500 911 3.36e-86 291
MsG0180000879.01.T01 AT1G20920 38.152 422 246 5 113 529 500 911 3.36e-86 291
MsG0180000879.01.T01 AT1G20920 38.152 422 246 5 113 529 500 911 3.36e-86 291
MsG0180000879.01.T01 AT3G01540 38.741 413 231 8 122 527 138 535 2.58e-85 278
MsG0180000879.01.T01 AT3G01540 38.741 413 231 8 122 527 138 535 2.58e-85 278
MsG0180000879.01.T01 AT3G01540 38.741 413 231 8 122 527 138 535 2.58e-85 278
MsG0180000879.01.T01 AT3G01540 38.741 413 231 8 122 527 138 535 2.63e-85 278
MsG0180000879.01.T01 AT5G14610 38.386 409 230 8 126 527 145 538 6.95e-84 275
MsG0180000879.01.T01 AT5G14610 38.386 409 230 8 126 527 145 538 7.49e-84 275
MsG0180000879.01.T01 AT5G14610 38.386 409 230 8 126 527 153 546 1.32e-83 275
MsG0180000879.01.T01 AT3G06480 39.320 412 232 7 121 527 414 812 1.39e-79 271
MsG0180000879.01.T01 AT1G31970 37.981 416 222 12 125 521 95 493 2.90e-79 260
MsG0180000879.01.T01 AT5G14610 38.889 378 211 7 156 527 44 407 4.41e-78 256
MsG0180000879.01.T01 AT5G14610 38.889 378 211 7 156 527 44 407 4.41e-78 256
MsG0180000879.01.T01 AT5G14610 37.831 415 232 10 123 527 208 606 7.05e-78 261
MsG0180000879.01.T01 AT3G09620 36.451 417 215 7 113 521 367 741 1.18e-73 254
MsG0180000879.01.T01 AT3G09620 36.451 417 215 7 113 521 368 742 1.33e-73 254
MsG0180000879.01.T01 AT5G63120 40.115 349 195 6 113 457 136 474 4.07e-73 242
MsG0180000879.01.T01 AT5G63120 40.115 349 195 6 113 457 136 474 6.27e-73 241
MsG0180000879.01.T01 AT5G63120 40.115 349 195 6 113 457 136 474 6.27e-73 241
MsG0180000879.01.T01 AT5G63120 40.115 349 195 6 113 457 136 474 6.27e-73 241
MsG0180000879.01.T01 AT1G28180 38.122 362 201 7 172 525 3 349 2.30e-68 226
MsG0180000879.01.T01 AT5G60990 33.333 369 234 4 141 503 8 370 9.23e-65 219
MsG0180000879.01.T01 AT1G16280 33.793 435 252 11 143 564 59 470 6.51e-64 218
MsG0180000879.01.T01 AT1G77030 33.756 394 243 6 144 533 30 409 1.07e-63 224
MsG0180000879.01.T01 AT5G14610 35.475 358 212 7 126 477 153 497 7.22e-63 215
MsG0180000879.01.T01 AT3G09720 34.307 411 236 11 97 496 96 483 3.35e-61 212
MsG0180000879.01.T01 AT3G09720 34.307 411 236 11 97 496 96 483 3.35e-61 212
MsG0180000879.01.T01 AT3G02065 30.695 417 275 7 117 527 83 491 3.91e-61 211
MsG0180000879.01.T01 AT3G02065 30.695 417 275 7 117 527 83 491 3.91e-61 211
MsG0180000879.01.T01 AT3G06480 37.714 350 201 6 122 466 415 752 1.71e-60 214
MsG0180000879.01.T01 AT3G22330 35.028 354 215 7 153 502 115 457 3.71e-60 211
MsG0180000879.01.T01 AT4G16630 33.005 406 243 7 143 534 168 558 5.72e-60 213
MsG0180000879.01.T01 AT5G26742 32.446 413 243 7 147 543 107 499 3.86e-59 210
MsG0180000879.01.T01 AT5G26742 32.446 413 243 7 147 543 107 499 3.91e-59 210
MsG0180000879.01.T01 AT3G22310 34.903 361 220 7 146 502 120 469 1.95e-58 206
MsG0180000879.01.T01 AT3G22310 34.903 361 220 7 146 502 120 469 2.54e-58 206
MsG0180000879.01.T01 AT3G13920 29.665 418 272 9 114 528 14 412 3.45e-58 200
MsG0180000879.01.T01 AT3G13920 30.769 390 251 8 142 528 29 402 8.23e-58 199
MsG0180000879.01.T01 AT3G13920 29.665 418 267 10 114 528 14 407 1.36e-56 196
MsG0180000879.01.T01 AT5G26742 32.898 383 221 7 177 543 44 406 2.26e-56 201
MsG0180000879.01.T01 AT3G13920 29.298 413 271 8 114 523 14 408 8.13e-56 194
MsG0180000879.01.T01 AT3G13920 29.298 413 271 8 114 523 18 412 1.17e-55 194
MsG0180000879.01.T01 AT1G72730 30.077 389 253 8 143 528 42 414 1.99e-55 193
MsG0180000879.01.T01 AT1G51380 30.691 391 249 6 141 528 21 392 2.52e-55 192
MsG0180000879.01.T01 AT5G65900 32.861 353 216 7 142 486 154 493 4.77e-55 197
MsG0180000879.01.T01 AT3G18600 32.597 362 229 6 129 486 77 427 1.82e-54 194
MsG0180000879.01.T01 AT3G19760 30.534 393 250 7 141 528 34 408 2.13e-54 190
MsG0180000879.01.T01 AT1G54270 30.867 392 248 8 142 528 39 412 2.40e-54 190
MsG0180000879.01.T01 AT1G71370 32.105 380 236 9 137 503 9 379 8.51e-54 192
MsG0180000879.01.T01 AT1G54270 31.551 374 233 8 160 528 52 407 4.52e-53 186
MsG0180000879.01.T01 AT3G02065 30.387 362 240 6 170 527 1 354 4.95e-52 182
MsG0180000879.01.T01 AT5G62190 32.115 383 236 9 136 508 93 461 4.03e-51 187
MsG0180000879.01.T01 AT5G05450 31.250 384 226 10 142 497 9 382 4.12e-50 183
MsG0180000879.01.T01 AT4G00660 29.293 396 262 6 135 528 123 502 3.22e-49 179
MsG0180000879.01.T01 AT4G00660 29.293 396 262 6 135 528 123 502 3.22e-49 179
MsG0180000879.01.T01 AT2G45810 30.685 365 236 5 135 497 146 495 4.58e-49 179
MsG0180000879.01.T01 AT3G61240 30.618 356 229 6 144 497 126 465 6.01e-49 177
MsG0180000879.01.T01 AT3G61240 30.618 356 229 6 144 497 126 465 6.01e-49 177
MsG0180000879.01.T01 AT2G40700 29.469 414 208 9 161 498 50 455 1.94e-47 176
MsG0180000879.01.T01 AT1G12770 27.711 415 240 8 140 501 108 515 1.67e-46 172
MsG0180000879.01.T01 AT1G12770 27.711 415 240 8 140 501 108 515 1.67e-46 172
MsG0180000879.01.T01 AT5G11170 29.737 380 235 11 132 497 31 392 1.33e-45 167
MsG0180000879.01.T01 AT5G11200 29.737 380 235 11 132 497 31 392 1.33e-45 167
MsG0180000879.01.T01 AT5G54910 31.081 444 256 14 140 558 69 487 3.14e-44 168
MsG0180000879.01.T01 AT5G63630 32.102 352 218 7 154 491 66 410 1.50e-43 163
MsG0180000879.01.T01 AT4G09730 28.906 384 231 10 141 499 111 477 1.22e-42 162
MsG0180000879.01.T01 AT5G63630 32.102 352 218 7 154 491 260 604 1.30e-42 163
MsG0180000879.01.T01 AT5G08610 31.461 356 215 7 154 491 394 738 8.96e-41 159
MsG0180000879.01.T01 AT2G07750 30.713 407 256 9 109 497 340 738 9.96e-41 158
MsG0180000879.01.T01 AT5G11170 30.982 326 198 10 181 497 2 309 1.29e-40 151
MsG0180000879.01.T01 AT5G11200 27.962 422 229 13 132 497 31 433 1.60e-40 154
MsG0180000879.01.T01 AT1G63250 31.054 351 224 7 154 491 340 685 1.73e-39 154
MsG0180000879.01.T01 AT5G08620 30.899 356 217 8 154 491 92 436 3.27e-39 152
MsG0180000879.01.T01 AT5G11200 27.231 437 231 13 132 497 31 451 3.96e-39 150
MsG0180000879.01.T01 AT3G53110 29.351 385 229 13 131 491 80 445 5.22e-38 147
MsG0180000879.01.T01 AT1G71280 29.940 334 193 10 135 461 11 310 4.62e-36 138
MsG0180000879.01.T01 AT1G71280 29.586 338 197 10 135 465 11 314 2.66e-35 139
MsG0180000879.01.T01 AT3G06980 28.721 383 237 13 142 497 374 747 4.24e-33 135
MsG0180000879.01.T01 AT3G16840 27.209 430 232 11 144 502 193 612 4.59e-33 135
MsG0180000879.01.T01 AT3G16840 27.209 430 232 11 144 502 192 611 4.89e-33 135
MsG0180000879.01.T01 AT4G34910 28.070 399 224 11 140 487 44 430 9.36e-32 130
MsG0180000879.01.T01 AT5G19210 26.842 380 242 10 132 486 66 434 2.08e-29 122
MsG0180000879.01.T01 AT1G51380 29.151 271 174 5 141 408 21 276 1.63e-27 112
MsG0180000879.01.T01 AT1G51380 30.233 215 136 2 141 355 21 221 4.98e-25 105
MsG0180000879.01.T01 AT1G51380 30.233 215 136 2 141 355 21 221 8.14e-25 105
MsG0180000879.01.T01 AT4G15850 24.455 413 236 10 155 501 44 446 7.08e-22 99.8
MsG0180000879.01.T01 AT5G19210 27.039 233 146 7 277 486 46 277 1.25e-17 84.7
MsG0180000879.01.T01 AT5G19210 27.039 233 146 7 277 486 46 277 1.25e-17 84.7
MsG0180000879.01.T01 AT1G28180 37.795 127 63 3 172 293 3 118 6.96e-15 71.6
MsG0180000879.01.T01 AT1G27880 24.251 367 217 13 169 511 274 603 5.05e-13 72.8
MsG0180000879.01.T01 AT1G27880 24.251 367 217 13 169 511 274 603 5.17e-13 72.8

Find 136 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTATGACGTTCTAATTT+TGG 0.116059 1:-12641019 None:intergenic
TCTAGCAAAATTCTGAATTT+TGG 0.133852 1:-12640363 None:intergenic
GGAATTGCTTTCACGGGTTC+TGG 0.240475 1:+12639891 MsG0180000879.01.T01:CDS
CACATAGTTGTTGCCACGCC+TGG 0.274883 1:+12640167 MsG0180000879.01.T01:CDS
CGTCCCACATTGACAATAAT+AGG 0.278247 1:-12640401 None:intergenic
TTGTTACCTTTGAAGGAATC+TGG 0.284937 1:+12640065 MsG0180000879.01.T01:CDS
CTCAGACCTTTGCTTTGTAT+TGG 0.297978 1:+12640098 MsG0180000879.01.T01:CDS
TTTCTAGAATCATCATCTAT+TGG 0.306294 1:-12639438 None:intergenic
ACAATTCTTGTTACCTTTGA+AGG 0.309882 1:+12640058 MsG0180000879.01.T01:CDS
GGCGAATCTTGATGTTATTC+AGG 0.315986 1:+12640433 MsG0180000879.01.T01:CDS
AATAATAGGAAGGATTGTTT+TGG 0.320959 1:+12641055 MsG0180000879.01.T01:CDS
GTGTGGCAAATGCAAATAAT+AGG 0.343166 1:+12641041 MsG0180000879.01.T01:CDS
TGTGCAGCCAACACCTATTC+AGG 0.343871 1:+12639827 MsG0180000879.01.T01:CDS
CAAGCAATGTTGTCTCAGTT+TGG 0.345951 1:-12640841 None:intergenic
TGATATTGCATCCAAAGGTT+TGG 0.363188 1:+12640691 MsG0180000879.01.T01:CDS
TCAATCAGCTCAGCCAAAAC+AGG 0.376407 1:-12640905 None:intergenic
AGCCTCCTTTGCATATTAGA+AGG 0.387546 1:+12639664 MsG0180000879.01.T01:CDS
GAGAATCTTCTGAGCTTTCA+TGG 0.389508 1:-12639391 None:intergenic
ACCGGAAGATGTGGCAAAAC+TGG 0.393311 1:+12640791 MsG0180000879.01.T01:CDS
AGACCTTTGCTTTGTATTGG+TGG 0.394935 1:+12640101 MsG0180000879.01.T01:CDS
TTAATGACATGCTGAATATC+AGG 0.397176 1:-12640719 None:intergenic
TCCCTCCCAGATAAAATAAC+AGG 0.398029 1:-12639861 None:intergenic
TACAGAACAGATTGTTCAAC+AGG 0.398392 1:+12639539 MsG0180000879.01.T01:CDS
GTGGAAGCCGTGGCAATTCA+TGG 0.398757 1:+12640593 MsG0180000879.01.T01:CDS
CTAATTCACGAACCGACATA+AGG 0.404039 1:-12639599 None:intergenic
ATCAGGAAAATCCAAACCTT+TGG 0.404652 1:-12640702 None:intergenic
GGAAGCCCTTGCACCTGAAT+AGG 0.407757 1:-12639840 None:intergenic
GGCTGATCGATTGGTAGATC+CGG 0.411884 1:+12640259 MsG0180000879.01.T01:CDS
CACGGGTTCTGGCAAAACTT+TGG 0.414563 1:+12639902 MsG0180000879.01.T01:CDS
GAAAATTATGTCCATAGGAT+TGG 0.415181 1:+12640764 MsG0180000879.01.T01:CDS
AACATCTTCAAAATAGGATC+CGG 0.417452 1:-12639789 None:intergenic
ATTGTCAATGTGGGACGTGC+AGG 0.426137 1:+12640407 MsG0180000879.01.T01:CDS
TGCATTGCCATCATGATCAT+TGG 0.427490 1:-12639936 None:intergenic
TAATTCACGAACCGACATAA+GGG 0.432495 1:-12639598 None:intergenic
TATTTGTCCATCGAGAGAAT+TGG 0.434261 1:+12640010 MsG0180000879.01.T01:CDS
TTCTCACAAAATATCAAAAC+AGG 0.435087 1:-12640524 None:intergenic
GTCATTTAAGACTGGAAAGA+AGG 0.439351 1:+12640652 MsG0180000879.01.T01:CDS
ATTACGATGCCTGTAGTTCC+CGG 0.440391 1:+12639966 MsG0180000879.01.T01:CDS
AATGGAAGAAGATGATTATG+AGG 0.446862 1:+12639341 None:intergenic
TATAACGAACCATTGCCTAC+TGG 0.451678 1:+12639636 MsG0180000879.01.T01:CDS
TAAGCCCAGTCTACTTGTTA+AGG 0.455473 1:+12639479 MsG0180000879.01.T01:CDS
ATTTCTTCATTATCTTCCAT+TGG 0.457806 1:-12640929 None:intergenic
TTCCGGTACGTCCAATCCTA+TGG 0.458107 1:-12640775 None:intergenic
CAAAATATCAAAACAGGAGG+TGG 0.462408 1:-12640518 None:intergenic
GCTATTTCGTCATTTAAGAC+TGG 0.467758 1:+12640644 MsG0180000879.01.T01:CDS
GGACAAATAATCAGACCAAA+TGG 0.468369 1:-12639996 None:intergenic
ATGGCGCGACGCTTCGCCAC+AGG 0.469175 1:-12639372 None:intergenic
AATGATCATGATGGCAATGC+AGG 0.472381 1:+12639938 MsG0180000879.01.T01:CDS
ATAACGAACCATTGCCTACT+GGG 0.472936 1:+12639637 MsG0180000879.01.T01:CDS
GGACCTTCACCGGGAACTAC+AGG 0.475654 1:-12639975 None:intergenic
CATGAGTATCTTCTCTTGAA+AGG 0.476814 1:+12640569 MsG0180000879.01.T01:CDS
TTATCTGGGAGGGATATGAT+TGG 0.476899 1:+12639870 MsG0180000879.01.T01:CDS
TATGATTGGAATTGCTTTCA+CGG 0.478341 1:+12639884 MsG0180000879.01.T01:CDS
TTTGAAGGAATCTGGATATC+CGG 0.481624 1:+12640073 MsG0180000879.01.T01:CDS
GAAGAAATCACTGGCATAAG+TGG 0.482770 1:+12640944 MsG0180000879.01.T01:CDS
CAGATAATTTCCCTTTGCGT+TGG 0.485668 1:-12639413 None:intergenic
TGTTGGCTGCACAATCCCCT+TGG 0.486336 1:-12639817 None:intergenic
GTTCCCGGTGAAGGTCCATT+TGG 0.490787 1:+12639981 MsG0180000879.01.T01:CDS
CAGACCAAATGGACCTTCAC+CGG 0.492977 1:-12639985 None:intergenic
CTTATATCATCTTCAAATCC+CGG 0.494897 1:-12640278 None:intergenic
TCCTTAAAATTCTTAATCGC+GGG 0.495673 1:-12639756 None:intergenic
AAATGAATCTTGATAACTGC+AGG 0.497521 1:+12640219 MsG0180000879.01.T01:CDS
CAGTGGCATATAATTGTCAA+TGG 0.504194 1:+12639720 MsG0180000879.01.T01:CDS
CACTGGCATAAGTGGTGTCA+AGG 0.508531 1:+12640952 MsG0180000879.01.T01:CDS
TGAGGCCTTAACAAGTAGAC+TGG 0.510721 1:-12639484 None:intergenic
ATCCTTAAAATTCTTAATCG+CGG 0.511417 1:-12639757 None:intergenic
ACATAGTTGTTGCCACGCCT+GGG 0.514259 1:+12640168 MsG0180000879.01.T01:CDS
ACAGCTTGAGATTGTCAAGA+AGG 0.518951 1:+12640139 MsG0180000879.01.T01:CDS
ATGATTGGAATTGCTTTCAC+GGG 0.521318 1:+12639885 MsG0180000879.01.T01:CDS
CAAAGCAAAGGTCTGAGCTC+CGG 0.523344 1:-12640092 None:intergenic
AATTCATGGAGACAAGGATC+AGG 0.523834 1:+12640607 MsG0180000879.01.T01:CDS
CAGCTTGAGATTGTCAAGAA+GGG 0.528031 1:+12640140 MsG0180000879.01.T01:CDS
AAAATATCAAAACAGGAGGT+GGG 0.530476 1:-12640517 None:intergenic
GACTGGAAAGAAGGATGTGT+TGG 0.532068 1:+12640661 MsG0180000879.01.T01:CDS
TTAAAATTCTTAATCGCGGG+TGG 0.532306 1:-12639753 None:intergenic
GTTAGATGAGGCTGATCGAT+TGG 0.534300 1:+12640250 MsG0180000879.01.T01:CDS
TTGTCAATGTGGGACGTGCA+GGG 0.535671 1:+12640408 MsG0180000879.01.T01:CDS
CAATGTGGGACGTGCAGGGG+CGG 0.535678 1:+12640412 MsG0180000879.01.T01:CDS
AAATTGAAAATTATGTCCAT+AGG 0.540038 1:+12640759 MsG0180000879.01.T01:CDS
AGAAGATTCTCCAACGCAAA+GGG 0.540048 1:+12639403 MsG0180000879.01.T01:CDS
TGCCACGCCTGGGAGGTTGA+AGG 0.543540 1:+12640178 MsG0180000879.01.T01:CDS
GTCCATAGGATTGGACGTAC+CGG 0.544392 1:+12640773 MsG0180000879.01.T01:CDS
GGCTGAGCTGATTGATCCAA+TGG 0.544866 1:+12640913 MsG0180000879.01.T01:CDS
AACATATCCTTCAACCTCCC+AGG 0.545718 1:-12640185 None:intergenic
TGTTCTGTAACACTAATCTC+AGG 0.547023 1:-12639525 None:intergenic
GCAACTGATATTGCATCCAA+AGG 0.548492 1:+12640686 MsG0180000879.01.T01:CDS
GTCATCCTTCTAATATGCAA+AGG 0.548607 1:-12639669 None:intergenic
GCTGATCGATTGGTAGATCC+GGG 0.548897 1:+12640260 MsG0180000879.01.T01:CDS
CGGTTCGTGAATTAGCGAAA+GGG 0.557381 1:+12639607 MsG0180000879.01.T01:CDS
GGATATCCAGATTCCTTCAA+AGG 0.559706 1:-12640071 None:intergenic
TGCCTCGCCAATTCTCTCGA+TGG 0.560284 1:-12640017 None:intergenic
CTTGTCTCCATGAATTGCCA+CGG 0.563651 1:-12640600 None:intergenic
GAAGATAATGAAGAAATCAC+TGG 0.564788 1:+12640935 MsG0180000879.01.T01:CDS
GGCTTCCACCCAGTAGGCAA+TGG 0.565220 1:-12639645 None:intergenic
ATGCCTGTAGTTCCCGGTGA+AGG 0.572075 1:+12639972 MsG0180000879.01.T01:CDS
AAAACCTATTATTGTCAATG+TGG 0.574587 1:+12640397 MsG0180000879.01.T01:CDS
AGACCAAATGGACCTTCACC+GGG 0.576562 1:-12639984 None:intergenic
AGCTTGAGATTGTCAAGAAG+GGG 0.576627 1:+12640141 MsG0180000879.01.T01:CDS
TGGGAGGTTGAAGGATATGT+TGG 0.576648 1:+12640187 MsG0180000879.01.T01:CDS
CAGAAGATTCTCCAACGCAA+AGG 0.577959 1:+12639402 MsG0180000879.01.T01:CDS
TGTGCTTCCAATGATCATGA+TGG 0.581752 1:+12639929 MsG0180000879.01.T01:CDS
TTTGGATCTGGAGGTTACAA+AGG 0.585574 1:+12641073 MsG0180000879.01.T01:CDS
CAATCAGCTCAGCCAAAACA+GGG 0.585774 1:-12640904 None:intergenic
AAATATCAAAACAGGAGGTG+GGG 0.587549 1:-12640516 None:intergenic
TTGTTCTTTCTTTAACTGTG+AGG 0.588178 1:-12639502 None:intergenic
GGCAAATGCAAATAATAGGA+AGG 0.588904 1:+12641045 MsG0180000879.01.T01:CDS
TTGATCACTTCAAAGCTCAA+AGG 0.591719 1:+12640309 MsG0180000879.01.T01:CDS
TGTCAATGTGGGACGTGCAG+GGG 0.592163 1:+12640409 MsG0180000879.01.T01:CDS
AAACCTATTATTGTCAATGT+GGG 0.592275 1:+12640398 MsG0180000879.01.T01:CDS
CCAACACCTATTCAGGTGCA+AGG 0.595863 1:+12639834 MsG0180000879.01.T01:CDS
CAGGTATTTAACGTTAGATG+AGG 0.599810 1:+12640238 MsG0180000879.01.T01:CDS
TCGGTTCGTGAATTAGCGAA+AGG 0.600474 1:+12639606 MsG0180000879.01.T01:CDS
ACTGGCATAAGTGGTGTCAA+GGG 0.604219 1:+12640953 MsG0180000879.01.T01:CDS
CGTGGCAATTCATGGAGACA+AGG 0.604702 1:+12640601 MsG0180000879.01.T01:CDS
ATTGGACGTACCGGAAGATG+TGG 0.605046 1:+12640782 MsG0180000879.01.T01:CDS
ATCCTTCAACCTCCCAGGCG+TGG 0.609061 1:-12640180 None:intergenic
CCTTGCACCTGAATAGGTGT+TGG 0.609165 1:-12639834 None:intergenic
ATCCTTCTAATATGCAAAGG+AGG 0.612632 1:-12639666 None:intergenic
GTATCTTCTCTTGAAAGGAG+TGG 0.613245 1:+12640574 MsG0180000879.01.T01:CDS
AGTAGAGTATGTCAAACAAG+AGG 0.613269 1:+12640457 MsG0180000879.01.T01:CDS
GTCCATCGAGAGAATTGGCG+AGG 0.619014 1:+12640015 MsG0180000879.01.T01:CDS
TAGTTGTTGCCACGCCTGGG+AGG 0.621410 1:+12640171 MsG0180000879.01.T01:CDS
CAACACCTATTCAGGTGCAA+GGG 0.626640 1:+12639835 MsG0180000879.01.T01:CDS
ATTAGAACGTCATAATAGTG+TGG 0.631530 1:+12641024 MsG0180000879.01.T01:CDS
ATTCCACCAATACAAAGCAA+AGG 0.634010 1:-12640104 None:intergenic
GAGGCCTTAACAAGTAGACT+GGG 0.645952 1:-12639483 None:intergenic
TCACAAAATATCAAAACAGG+AGG 0.646136 1:-12640521 None:intergenic
ATCAGCTCAGCCAAAACAGG+GGG 0.654999 1:-12640902 None:intergenic
GATCATGATGGCAATGCAGG+AGG 0.660735 1:+12639941 MsG0180000879.01.T01:CDS
CTTGAAAGGAGTGGAAGCCG+TGG 0.660852 1:+12640583 MsG0180000879.01.T01:CDS
GCTTGAGATTGTCAAGAAGG+GGG 0.666059 1:+12640142 MsG0180000879.01.T01:CDS
AAAGGAGGCTTCCACCCAGT+AGG 0.671260 1:-12639651 None:intergenic
AATCAGCTCAGCCAAAACAG+GGG 0.693758 1:-12640903 None:intergenic
ACGAACCATTGCCTACTGGG+TGG 0.698489 1:+12639640 MsG0180000879.01.T01:CDS
TTATGAGGAGTATATTCCTG+TGG 0.702818 1:+12639356 MsG0180000879.01.T01:CDS
TGATTCTAGAAAACTAAGTG+TGG 0.748043 1:+12639449 MsG0180000879.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAAATTATGTCCAT+AGG + Chr1:12640759-12640778 MsG0180000879.01.T01:CDS 20.0%
!!! GTTTTTAACATCTTCAAAAT+AGG - Chr1:12639798-12639817 None:intergenic 20.0%
!!! TTAAGAATTTTAAGGATATG+AGG + Chr1:12639763-12639782 MsG0180000879.01.T01:CDS 20.0%
!!! TTTGATATTTTGTGAGAATA+AGG + Chr1:12640529-12640548 MsG0180000879.01.T01:CDS 20.0%
! AAAACCTATTATTGTCAATG+TGG + Chr1:12640397-12640416 MsG0180000879.01.T01:CDS 25.0%
! AAACCTATTATTGTCAATGT+GGG + Chr1:12640398-12640417 MsG0180000879.01.T01:CDS 25.0%
! ATCCTTAAAATTCTTAATCG+CGG - Chr1:12639760-12639779 None:intergenic 25.0%
! ATTTCTTCATTATCTTCCAT+TGG - Chr1:12640932-12640951 None:intergenic 25.0%
! TGATAAAAAAACCCTTATGT+CGG + Chr1:12639587-12639606 MsG0180000879.01.T01:CDS 25.0%
! TTCTCACAAAATATCAAAAC+AGG - Chr1:12640527-12640546 None:intergenic 25.0%
! TTGAAGATGTTAAAAACCAA+GGG + Chr1:12639801-12639820 MsG0180000879.01.T01:CDS 25.0%
! TTTGAAGATGTTAAAAACCA+AGG + Chr1:12639800-12639819 MsG0180000879.01.T01:CDS 25.0%
!! AATAATAGGAAGGATTGTTT+TGG + Chr1:12641055-12641074 MsG0180000879.01.T01:CDS 25.0%
!! ACATAATTTTCAATTTCAGC+AGG - Chr1:12640755-12640774 None:intergenic 25.0%
!! ATCAAGATTCATTTTCTTCT+TGG - Chr1:12640213-12640232 None:intergenic 25.0%
!! CTATTATGACGTTCTAATTT+TGG - Chr1:12641022-12641041 None:intergenic 25.0%
!! TCTAGCAAAATTCTGAATTT+TGG - Chr1:12640366-12640385 None:intergenic 25.0%
!!! TTTCTAGAATCATCATCTAT+TGG - Chr1:12639441-12639460 None:intergenic 25.0%
AAAATATCAAAACAGGAGGT+GGG - Chr1:12640520-12640539 None:intergenic 30.0%
AACATCTTCAAAATAGGATC+CGG - Chr1:12639792-12639811 None:intergenic 30.0%
ACAATTCTTGTTACCTTTGA+AGG + Chr1:12640058-12640077 MsG0180000879.01.T01:CDS 30.0%
ATTAGAACGTCATAATAGTG+TGG + Chr1:12641024-12641043 MsG0180000879.01.T01:CDS 30.0%
CTTATATCATCTTCAAATCC+CGG - Chr1:12640281-12640300 None:intergenic 30.0%
GAAAATTATGTCCATAGGAT+TGG + Chr1:12640764-12640783 MsG0180000879.01.T01:CDS 30.0%
GAAGATAATGAAGAAATCAC+TGG + Chr1:12640935-12640954 MsG0180000879.01.T01:CDS 30.0%
GTGATTTGATTCAAAAACAG+TGG + Chr1:12639703-12639722 MsG0180000879.01.T01:CDS 30.0%
TATGATTGGAATTGCTTTCA+CGG + Chr1:12639884-12639903 MsG0180000879.01.T01:CDS 30.0%
TCACAAAATATCAAAACAGG+AGG - Chr1:12640524-12640543 None:intergenic 30.0%
TCCTTAAAATTCTTAATCGC+GGG - Chr1:12639759-12639778 None:intergenic 30.0%
TGAAGATGTTAAAAACCAAG+GGG + Chr1:12639802-12639821 MsG0180000879.01.T01:CDS 30.0%
TTAATGACATGCTGAATATC+AGG - Chr1:12640722-12640741 None:intergenic 30.0%
TTGTTCTTTCTTTAACTGTG+AGG - Chr1:12639505-12639524 None:intergenic 30.0%
! AAATGAATCTTGATAACTGC+AGG + Chr1:12640219-12640238 MsG0180000879.01.T01:CDS 30.0%
! TGATTCTAGAAAACTAAGTG+TGG + Chr1:12639449-12639468 MsG0180000879.01.T01:CDS 30.0%
!! GCAAAATTCTGAATTTTGGT+TGG - Chr1:12640362-12640381 None:intergenic 30.0%
!! TTTTAAGGATATGAGGTTTC+CGG + Chr1:12639770-12639789 MsG0180000879.01.T01:CDS 30.0%
AAATATCAAAACAGGAGGTG+GGG - Chr1:12640519-12640538 None:intergenic 35.0%
AGTAGAGTATGTCAAACAAG+AGG + Chr1:12640457-12640476 MsG0180000879.01.T01:CDS 35.0%
ATCAGGAAAATCCAAACCTT+TGG - Chr1:12640705-12640724 None:intergenic 35.0%
ATCCTTCTAATATGCAAAGG+AGG - Chr1:12639669-12639688 None:intergenic 35.0%
ATGATTGGAATTGCTTTCAC+GGG + Chr1:12639885-12639904 MsG0180000879.01.T01:CDS 35.0%
ATTCCACCAATACAAAGCAA+AGG - Chr1:12640107-12640126 None:intergenic 35.0%
CAAAATATCAAAACAGGAGG+TGG - Chr1:12640521-12640540 None:intergenic 35.0%
CAGGTATTTAACGTTAGATG+AGG + Chr1:12640238-12640257 MsG0180000879.01.T01:CDS 35.0%
CAGTGGCATATAATTGTCAA+TGG + Chr1:12639720-12639739 MsG0180000879.01.T01:CDS 35.0%
CATGAGTATCTTCTCTTGAA+AGG + Chr1:12640569-12640588 MsG0180000879.01.T01:CDS 35.0%
GGACAAATAATCAGACCAAA+TGG - Chr1:12639999-12640018 None:intergenic 35.0%
GGCAAATGCAAATAATAGGA+AGG + Chr1:12641045-12641064 MsG0180000879.01.T01:CDS 35.0%
GTCATCCTTCTAATATGCAA+AGG - Chr1:12639672-12639691 None:intergenic 35.0%
GTGTGGCAAATGCAAATAAT+AGG + Chr1:12641041-12641060 MsG0180000879.01.T01:CDS 35.0%
TAATTCACGAACCGACATAA+GGG - Chr1:12639601-12639620 None:intergenic 35.0%
TACAGAACAGATTGTTCAAC+AGG + Chr1:12639539-12639558 MsG0180000879.01.T01:CDS 35.0%
TATTTGTCCATCGAGAGAAT+TGG + Chr1:12640010-12640029 MsG0180000879.01.T01:CDS 35.0%
TGATATTGCATCCAAAGGTT+TGG + Chr1:12640691-12640710 MsG0180000879.01.T01:CDS 35.0%
TGTTCTGTAACACTAATCTC+AGG - Chr1:12639528-12639547 None:intergenic 35.0%
TTAAAATTCTTAATCGCGGG+TGG - Chr1:12639756-12639775 None:intergenic 35.0%
TTGATCACTTCAAAGCTCAA+AGG + Chr1:12640309-12640328 MsG0180000879.01.T01:CDS 35.0%
TTTGAAGGAATCTGGATATC+CGG + Chr1:12640073-12640092 MsG0180000879.01.T01:CDS 35.0%
! ACCCGCGATTAAGAATTTTA+AGG + Chr1:12639755-12639774 MsG0180000879.01.T01:CDS 35.0%
! GCTATTTCGTCATTTAAGAC+TGG + Chr1:12640644-12640663 MsG0180000879.01.T01:CDS 35.0%
! GTCATTTAAGACTGGAAAGA+AGG + Chr1:12640652-12640671 MsG0180000879.01.T01:CDS 35.0%
! TCTGTTTTGCTTCTTGCAAA+AGG - Chr1:12640877-12640896 None:intergenic 35.0%
! TTATGAGGAGTATATTCCTG+TGG + Chr1:12639356-12639375 MsG0180000879.01.T01:CDS 35.0%
! TTGTTACCTTTGAAGGAATC+TGG + Chr1:12640065-12640084 MsG0180000879.01.T01:CDS 35.0%
! TTTTGCAAGAAGCAAAACAG+AGG + Chr1:12640876-12640895 MsG0180000879.01.T01:CDS 35.0%
!!! GAATTTTGCTAGAAGTGCTT+TGG + Chr1:12640373-12640392 MsG0180000879.01.T01:CDS 35.0%
!!! GGCTTCCTGTTATTTTATCT+GGG + Chr1:12639856-12639875 MsG0180000879.01.T01:CDS 35.0%
!!! TCCTGTTATTTTATCTGGGA+GGG + Chr1:12639860-12639879 MsG0180000879.01.T01:CDS 35.0%
!!! TTCCTGTTATTTTATCTGGG+AGG + Chr1:12639859-12639878 MsG0180000879.01.T01:CDS 35.0%
AATGATCATGATGGCAATGC+AGG + Chr1:12639938-12639957 MsG0180000879.01.T01:CDS 40.0%
AATTCATGGAGACAAGGATC+AGG + Chr1:12640607-12640626 MsG0180000879.01.T01:CDS 40.0%
ACAGCTTGAGATTGTCAAGA+AGG + Chr1:12640139-12640158 MsG0180000879.01.T01:CDS 40.0%
AGAAGATTCTCCAACGCAAA+GGG + Chr1:12639403-12639422 MsG0180000879.01.T01:CDS 40.0%
AGACCTTTGCTTTGTATTGG+TGG + Chr1:12640101-12640120 MsG0180000879.01.T01:CDS 40.0%
AGCCTCCTTTGCATATTAGA+AGG + Chr1:12639664-12639683 MsG0180000879.01.T01:CDS 40.0%
AGCTTGAGATTGTCAAGAAG+GGG + Chr1:12640141-12640160 MsG0180000879.01.T01:CDS 40.0%
ATAACGAACCATTGCCTACT+GGG + Chr1:12639637-12639656 MsG0180000879.01.T01:CDS 40.0%
CAAGCAATGTTGTCTCAGTT+TGG - Chr1:12640844-12640863 None:intergenic 40.0%
CAGATAATTTCCCTTTGCGT+TGG - Chr1:12639416-12639435 None:intergenic 40.0%
CAGCTTGAGATTGTCAAGAA+GGG + Chr1:12640140-12640159 MsG0180000879.01.T01:CDS 40.0%
CGTCCCACATTGACAATAAT+AGG - Chr1:12640404-12640423 None:intergenic 40.0%
CTAATTCACGAACCGACATA+AGG - Chr1:12639602-12639621 None:intergenic 40.0%
CTCAGACCTTTGCTTTGTAT+TGG + Chr1:12640098-12640117 MsG0180000879.01.T01:CDS 40.0%
GAAGAAATCACTGGCATAAG+TGG + Chr1:12640944-12640963 MsG0180000879.01.T01:CDS 40.0%
GAGAATCTTCTGAGCTTTCA+TGG - Chr1:12639394-12639413 None:intergenic 40.0%
GCAACTGATATTGCATCCAA+AGG + Chr1:12640686-12640705 MsG0180000879.01.T01:CDS 40.0%
GGATATCCAGATTCCTTCAA+AGG - Chr1:12640074-12640093 None:intergenic 40.0%
GGCGAATCTTGATGTTATTC+AGG + Chr1:12640433-12640452 MsG0180000879.01.T01:CDS 40.0%
GTATCTTCTCTTGAAAGGAG+TGG + Chr1:12640574-12640593 MsG0180000879.01.T01:CDS 40.0%
TATAACGAACCATTGCCTAC+TGG + Chr1:12639636-12639655 MsG0180000879.01.T01:CDS 40.0%
TCCCTCCCAGATAAAATAAC+AGG - Chr1:12639864-12639883 None:intergenic 40.0%
TGCATTGCCATCATGATCAT+TGG - Chr1:12639939-12639958 None:intergenic 40.0%
TGTGCTTCCAATGATCATGA+TGG + Chr1:12639929-12639948 MsG0180000879.01.T01:CDS 40.0%
TTATCTGGGAGGGATATGAT+TGG + Chr1:12639870-12639889 MsG0180000879.01.T01:CDS 40.0%
TTTGGATCTGGAGGTTACAA+AGG + Chr1:12641073-12641092 MsG0180000879.01.T01:CDS 40.0%
! TAAGCCCAGTCTACTTGTTA+AGG + Chr1:12639479-12639498 MsG0180000879.01.T01:CDS 40.0%
!!! AAGGATTGTTTTGGATCTGG+AGG + Chr1:12641064-12641083 MsG0180000879.01.T01:CDS 40.0%
!!! AGGAAGGATTGTTTTGGATC+TGG + Chr1:12641061-12641080 MsG0180000879.01.T01:CDS 40.0%
!!! GGGCTTCCTGTTATTTTATC+TGG + Chr1:12639855-12639874 MsG0180000879.01.T01:CDS 40.0%
AACATATCCTTCAACCTCCC+AGG - Chr1:12640188-12640207 None:intergenic 45.0%
AATCAGCTCAGCCAAAACAG+GGG - Chr1:12640906-12640925 None:intergenic 45.0%
ATTACGATGCCTGTAGTTCC+CGG + Chr1:12639966-12639985 MsG0180000879.01.T01:CDS 45.0%
CAACACCTATTCAGGTGCAA+GGG + Chr1:12639835-12639854 MsG0180000879.01.T01:CDS 45.0%
CAATCAGCTCAGCCAAAACA+GGG - Chr1:12640907-12640926 None:intergenic 45.0%
CAGAAGATTCTCCAACGCAA+AGG + Chr1:12639402-12639421 MsG0180000879.01.T01:CDS 45.0%
CGGTTCGTGAATTAGCGAAA+GGG + Chr1:12639607-12639626 MsG0180000879.01.T01:CDS 45.0%
CTTGTCTCCATGAATTGCCA+CGG - Chr1:12640603-12640622 None:intergenic 45.0%
GACTGGAAAGAAGGATGTGT+TGG + Chr1:12640661-12640680 MsG0180000879.01.T01:CDS 45.0%
GAGGCCTTAACAAGTAGACT+GGG - Chr1:12639486-12639505 None:intergenic 45.0%
GCTTGAGATTGTCAAGAAGG+GGG + Chr1:12640142-12640161 MsG0180000879.01.T01:CDS 45.0%
GTTAGATGAGGCTGATCGAT+TGG + Chr1:12640250-12640269 MsG0180000879.01.T01:CDS 45.0%
TCAATCAGCTCAGCCAAAAC+AGG - Chr1:12640908-12640927 None:intergenic 45.0%
TGAGGCCTTAACAAGTAGAC+TGG - Chr1:12639487-12639506 None:intergenic 45.0%
TGGGAGGTTGAAGGATATGT+TGG + Chr1:12640187-12640206 MsG0180000879.01.T01:CDS 45.0%
! ACCAGTTTTGCCACATCTTC+CGG - Chr1:12640795-12640814 None:intergenic 45.0%
! ACTGGCATAAGTGGTGTCAA+GGG + Chr1:12640953-12640972 MsG0180000879.01.T01:CDS 45.0%
! TCGGTTCGTGAATTAGCGAA+AGG + Chr1:12639606-12639625 MsG0180000879.01.T01:CDS 45.0%
! TTTTCTGTAGGCACTCAAGG+AGG - Chr1:12640496-12640515 None:intergenic 45.0%
!! AAGGGATGTGCGTTTTGTTG+CGG + Chr1:12640971-12640990 MsG0180000879.01.T01:CDS 45.0%
ACATAGTTGTTGCCACGCCT+GGG + Chr1:12640168-12640187 MsG0180000879.01.T01:CDS 50.0%
ACCGGAAGATGTGGCAAAAC+TGG + Chr1:12640791-12640810 MsG0180000879.01.T01:CDS 50.0%
AGACCAAATGGACCTTCACC+GGG - Chr1:12639987-12640006 None:intergenic 50.0%
ATCAGCTCAGCCAAAACAGG+GGG - Chr1:12640905-12640924 None:intergenic 50.0%
ATTGGACGTACCGGAAGATG+TGG + Chr1:12640782-12640801 MsG0180000879.01.T01:CDS 50.0%
ATTGTCAATGTGGGACGTGC+AGG + Chr1:12640407-12640426 MsG0180000879.01.T01:CDS 50.0%
CAAAGCAAAGGTCTGAGCTC+CGG - Chr1:12640095-12640114 None:intergenic 50.0%
CAGACCAAATGGACCTTCAC+CGG - Chr1:12639988-12640007 None:intergenic 50.0%
CCAACACCTATTCAGGTGCA+AGG + Chr1:12639834-12639853 MsG0180000879.01.T01:CDS 50.0%
CCTTGCACCTGAATAGGTGT+TGG - Chr1:12639837-12639856 None:intergenic 50.0%
CGTGGCAATTCATGGAGACA+AGG + Chr1:12640601-12640620 MsG0180000879.01.T01:CDS 50.0%
GATCATGATGGCAATGCAGG+AGG + Chr1:12639941-12639960 MsG0180000879.01.T01:CDS 50.0%
GCTGATCGATTGGTAGATCC+GGG + Chr1:12640260-12640279 MsG0180000879.01.T01:CDS 50.0%
GGAATTGCTTTCACGGGTTC+TGG + Chr1:12639891-12639910 MsG0180000879.01.T01:CDS 50.0%
GGCTGAGCTGATTGATCCAA+TGG + Chr1:12640913-12640932 MsG0180000879.01.T01:CDS 50.0%
GGCTGATCGATTGGTAGATC+CGG + Chr1:12640259-12640278 MsG0180000879.01.T01:CDS 50.0%
GTCCATAGGATTGGACGTAC+CGG + Chr1:12640773-12640792 MsG0180000879.01.T01:CDS 50.0%
TGTGCAGCCAACACCTATTC+AGG + Chr1:12639827-12639846 MsG0180000879.01.T01:CDS 50.0%
TTCCGGTACGTCCAATCCTA+TGG - Chr1:12640778-12640797 None:intergenic 50.0%
TTGTCAATGTGGGACGTGCA+GGG + Chr1:12640408-12640427 MsG0180000879.01.T01:CDS 50.0%
! ACAGAGGATTCCCCCTGTTT+TGG + Chr1:12640892-12640911 MsG0180000879.01.T01:CDS 50.0%
! CACGGGTTCTGGCAAAACTT+TGG + Chr1:12639902-12639921 MsG0180000879.01.T01:CDS 50.0%
! CACTGGCATAAGTGGTGTCA+AGG + Chr1:12640952-12640971 MsG0180000879.01.T01:CDS 50.0%
! GGGTTTTCTGTAGGCACTCA+AGG - Chr1:12640499-12640518 None:intergenic 50.0%
!! AGGGATGTGCGTTTTGTTGC+GGG + Chr1:12640972-12640991 MsG0180000879.01.T01:CDS 50.0%
AAAGGAGGCTTCCACCCAGT+AGG - Chr1:12639654-12639673 None:intergenic 55.0%
ACGAACCATTGCCTACTGGG+TGG + Chr1:12639640-12639659 MsG0180000879.01.T01:CDS 55.0%
ATGCCTGTAGTTCCCGGTGA+AGG + Chr1:12639972-12639991 MsG0180000879.01.T01:CDS 55.0%
CACATAGTTGTTGCCACGCC+TGG + Chr1:12640167-12640186 MsG0180000879.01.T01:CDS 55.0%
CTTGAAAGGAGTGGAAGCCG+TGG + Chr1:12640583-12640602 MsG0180000879.01.T01:CDS 55.0%
GGAAGCCCTTGCACCTGAAT+AGG - Chr1:12639843-12639862 None:intergenic 55.0%
GTCCATCGAGAGAATTGGCG+AGG + Chr1:12640015-12640034 MsG0180000879.01.T01:CDS 55.0%
GTGGAAGCCGTGGCAATTCA+TGG + Chr1:12640593-12640612 MsG0180000879.01.T01:CDS 55.0%
GTTCCCGGTGAAGGTCCATT+TGG + Chr1:12639981-12640000 MsG0180000879.01.T01:CDS 55.0%
TGCCTCGCCAATTCTCTCGA+TGG - Chr1:12640020-12640039 None:intergenic 55.0%
TGTCAATGTGGGACGTGCAG+GGG + Chr1:12640409-12640428 MsG0180000879.01.T01:CDS 55.0%
! CAGGAGGTGGGGTTTTCTGT+AGG - Chr1:12640508-12640527 None:intergenic 55.0%
! TGTTGGCTGCACAATCCCCT+TGG - Chr1:12639820-12639839 None:intergenic 55.0%
!! TGTGCGTTTTGTTGCGGGCT+TGG + Chr1:12640977-12640996 MsG0180000879.01.T01:CDS 55.0%
ATCCTTCAACCTCCCAGGCG+TGG - Chr1:12640183-12640202 None:intergenic 60.0%
GGACCTTCACCGGGAACTAC+AGG - Chr1:12639978-12639997 None:intergenic 60.0%
GGCTTCCACCCAGTAGGCAA+TGG - Chr1:12639648-12639667 None:intergenic 60.0%
TAGTTGTTGCCACGCCTGGG+AGG + Chr1:12640171-12640190 MsG0180000879.01.T01:CDS 60.0%
CAATGTGGGACGTGCAGGGG+CGG + Chr1:12640412-12640431 MsG0180000879.01.T01:CDS 65.0%
TGCCACGCCTGGGAGGTTGA+AGG + Chr1:12640178-12640197 MsG0180000879.01.T01:CDS 65.0%
ATGGCGCGACGCTTCGCCAC+AGG - Chr1:12639375-12639394 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 12639342 12641105 12639342 ID=MsG0180000879.01;Name=MsG0180000879.01
Chr1 mRNA 12639342 12641105 12639342 ID=MsG0180000879.01.T01;Parent=MsG0180000879.01;Name=MsG0180000879.01.T01;_AED=0.08;_eAED=0.08;_QI=0|-1|0|1|-1|1|1|0|587
Chr1 exon 12639342 12641105 12639342 ID=MsG0180000879.01.T01:exon:144;Parent=MsG0180000879.01.T01
Chr1 CDS 12639342 12641105 12639342 ID=MsG0180000879.01.T01:cds;Parent=MsG0180000879.01.T01
Gene Sequence

>MsG0180000879.01.T01

ATGGAAGAAGATGATTATGAGGAGTATATTCCTGTGGCGAAGCGTCGCGCCATGAAAGCTCAGAAGATTCTCCAACGCAAAGGGAAATTATCTGCTCCAATAGATGATGATTCTAGAAAACTAAGTGTGGTTGAAACTAAGCCCAGTCTACTTGTTAAGGCCTCACAGTTAAAGAAAGAACAACCTGAGATTAGTGTTACAGAACAGATTGTTCAACAGGAGAAAGAGATGATTGAGAATTTGTCTGATAAAAAAACCCTTATGTCGGTTCGTGAATTAGCGAAAGGGATCACTTATAACGAACCATTGCCTACTGGGTGGAAGCCTCCTTTGCATATTAGAAGGATGACAAAGAAAGATTGTGATTTGATTCAAAAACAGTGGCATATAATTGTCAATGGTGAAGATATTCCACCCGCGATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCTATTTTGAAGATGTTAAAAACCAAGGGGATTGTGCAGCCAACACCTATTCAGGTGCAAGGGCTTCCTGTTATTTTATCTGGGAGGGATATGATTGGAATTGCTTTCACGGGTTCTGGCAAAACTTTGGTTTTTGTGCTTCCAATGATCATGATGGCAATGCAGGAGGAAATTACGATGCCTGTAGTTCCCGGTGAAGGTCCATTTGGTCTGATTATTTGTCCATCGAGAGAATTGGCGAGGCAAACTTATGAAGTCATTGAACAATTCTTGTTACCTTTGAAGGAATCTGGATATCCGGAGCTCAGACCTTTGCTTTGTATTGGTGGAATTGATACGAGATCACAGCTTGAGATTGTCAAGAAGGGGGTTCACATAGTTGTTGCCACGCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACGTTAGATGAGGCTGATCGATTGGTAGATCCGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTCTTGTTTTCTGCTACTATGCCAACCAAAATTCAGAATTTTGCTAGAAGTGCTTTGGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCGGCGAATCTTGATGTTATTCAGGAAGTAGAGTATGTCAAACAAGAGGCAAAAATTGTTTACCTCCTTGAGTGCCTACAGAAAACCCCACCTCCTGTTTTGATATTTTGTGAGAATAAGGCAGATGTCGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCCGTGGCAATTCATGGAGACAAGGATCAGGAAGATAGAGAGTATGCTATTTCGTCATTTAAGACTGGAAAGAAGGATGTGTTGGTTGCAACTGATATTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTACGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCGACAACATTTATAAACAAGAACCAAACTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCAAAACAGAGGATTCCCCCTGTTTTGGCTGAGCTGATTGATCCAATGGAAGATAATGAAGAAATCACTGGCATAAGTGGTGTCAAGGGATGTGCGTTTTGTTGCGGGCTTGGTCATCGTATGCGCGATTGTCCAAAATTAGAACGTCATAATAGTGTGGCAAATGCAAATAATAGGAAGGATTGTTTTGGATCTGGAGGTTACAAAGGAGAAATTTGA
Protein sequence

>MsG0180000879.01.T01

MEEDDYEEYIPVAKRRAMKAQKILQRKGKLSAPIDDDSRKLSVVETKPSLLVKASQLKKEQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYNEPLPTGWKPPLHIRRMTKKDCDLIQKQWHIIVNGEDIPPAIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEITMPVVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKESGYPELRPLLCIGGIDTRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDPGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGDKDQEDREYAISSFKTGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELIDPMEDNEEITGISGVKGCAFCCGLGHRMRDCPKLERHNSVANANNRKDCFGSGGYKGEI*