AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000988.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000988.01.T01 MTR_1g028380 94.737 190 3 2 1 183 1 190 4.64e-130 362
MsG0180000988.01.T01 MTR_3g090980 86.243 189 20 2 1 183 4 192 5.12e-119 335
MsG0180000988.01.T01 MTR_8g027805 73.743 179 44 1 6 181 9 187 6.82e-100 286
MsG0180000988.01.T01 MTR_3g071740 51.163 172 76 5 12 178 63 231 4.54e-56 177
MsG0180000988.01.T01 MTR_7g070050 55.621 169 66 4 13 172 11 179 1.19e-53 169
MsG0180000988.01.T01 MTR_5g083270 51.534 163 70 4 13 169 44 203 3.06e-53 169
MsG0180000988.01.T01 MTR_4g014460 49.689 161 77 2 15 171 49 209 1.02e-51 165
MsG0180000988.01.T01 MTR_1g016480 49.367 158 76 2 15 168 39 196 5.91e-51 163
MsG0180000988.01.T01 MTR_5g030500 49.398 166 74 4 14 170 43 207 9.25e-48 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000988.01.T01 AT5G53160 76.923 182 37 2 2 178 4 185 2.16e-102 293
MsG0180000988.01.T01 AT1G01360 72.376 181 46 2 2 178 7 187 8.71e-95 273
MsG0180000988.01.T01 AT4G27920 66.304 184 57 3 1 180 1 183 2.20e-88 257
MsG0180000988.01.T01 AT4G01026 70.175 171 48 1 13 180 21 191 1.21e-85 251
MsG0180000988.01.T01 AT5G53160 74.561 114 24 2 2 110 4 117 4.47e-57 177
MsG0180000988.01.T01 AT2G38310 53.293 167 70 3 17 178 41 204 2.29e-52 166
MsG0180000988.01.T01 AT5G05440 51.899 158 68 4 13 165 43 197 5.28e-52 166
MsG0180000988.01.T01 AT2G40330 47.904 167 80 3 13 172 46 212 4.31e-51 164
MsG0180000988.01.T01 AT2G26040 47.619 168 80 4 15 175 22 188 3.06e-50 160
MsG0180000988.01.T01 AT4G17870 49.693 163 77 2 15 172 17 179 5.30e-48 155
MsG0180000988.01.T01 AT1G73000 41.573 178 89 4 7 170 30 206 1.26e-42 142
MsG0180000988.01.T01 AT5G46790 46.707 167 81 3 13 171 42 208 4.02e-38 130
MsG0180000988.01.T01 AT5G46790 46.707 167 81 3 13 171 42 208 4.02e-38 130
MsG0180000988.01.T01 AT5G45860 49.091 165 72 4 12 172 1 157 9.18e-38 128
MsG0180000988.01.T01 AT5G45870 50.000 148 68 3 28 171 10 155 1.49e-36 125
MsG0180000988.01.T01 AT4G18620 42.236 161 83 2 21 171 2 162 3.72e-32 114

Find 63 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTCTTGCAGTTGTCTA+AGG 0.222029 1:+14127447 MsG0180000988.01.T01:three_prime_UTR
AAGATAATCAATAGAGTAAA+TGG 0.235881 1:-14127331 None:intergenic
GGCCTTCCATCAATAATTTC+AGG 0.237394 1:-14127022 None:intergenic
AATTGGAAGGTTTAGTAATA+TGG 0.277883 1:+14125183 MsG0180000988.01.T01:CDS
GTTCTCAGCATCAGGATTAT+TGG 0.292453 1:+14126717 MsG0180000988.01.T01:CDS
GATTCAATTACTAGTGTTCC+TGG 0.339755 1:-14127043 None:intergenic
AGAGAAGTTGATGTTAAATC+AGG 0.349446 1:+14126639 MsG0180000988.01.T01:CDS
CTCCACCCTGAAATTATTGA+TGG 0.373274 1:+14127016 MsG0180000988.01.T01:CDS
CTCGTCTTTGGTGTTCCCCT+CGG 0.382151 1:-14127083 None:intergenic
AGCTCCTATACTCGATCAAT+TGG 0.394763 1:-14127196 None:intergenic
CTTTCTCTAGGTATGGTCCT+TGG 0.413122 1:+14126533 MsG0180000988.01.T01:intron
GAAGTAGCAGGTCTCGTCTT+TGG 0.424937 1:-14127095 None:intergenic
GTTCTTCATTGTATATAAGA+TGG 0.435137 1:+14127488 MsG0180000988.01.T01:three_prime_UTR
TTGTAAGCAGATGTGTTGTA+AGG 0.437036 1:+14126592 MsG0180000988.01.T01:CDS
TCGTCTTTGGTGTTCCCCTC+GGG 0.437338 1:-14127082 None:intergenic
ACAACACATCTGCTTACAAA+TGG 0.446274 1:-14126588 None:intergenic
ATGAGCATGTTCTCAGCATC+AGG 0.451170 1:+14126709 MsG0180000988.01.T01:CDS
TTTGAGATTGCACTTAATAA+CGG 0.454096 1:-14127125 None:intergenic
GAAATTATTGATGGAAGGCC+AGG 0.463774 1:+14127025 MsG0180000988.01.T01:CDS
TGCTTCTTGCAGTTGTCTAA+GGG 0.466717 1:+14127448 MsG0180000988.01.T01:three_prime_UTR
CTTTCTGTACTTGTAGTAGC+AGG 0.476962 1:-14126666 None:intergenic
GCCTTCCATCAATAATTTCA+GGG 0.477985 1:-14127021 None:intergenic
TACTACAAGTACAGAAAGAT+TGG 0.478896 1:+14126671 MsG0180000988.01.T01:CDS
AGGTATGGTCCTTGGTAAGA+AGG 0.487057 1:+14126541 MsG0180000988.01.T01:intron
CCGTGGCAGCTATATGTCCT+TGG 0.491660 1:-14127237 None:intergenic
CCTCATGGAGGCTTAGGAGA+TGG 0.493427 1:+14127279 MsG0180000988.01.T01:three_prime_UTR
AGACATCACCGGCAGCAGCC+TGG 0.503570 1:+14125223 MsG0180000988.01.T01:CDS
CTATACTCGATCAATTGGTT+CGG 0.504925 1:-14127191 None:intergenic
TGGTGGTGATCATCGACTTA+CGG 0.507996 1:+14126737 MsG0180000988.01.T01:CDS
CGAACCAATTGATCGAGTAT+AGG 0.511518 1:+14127192 MsG0180000988.01.T01:CDS
GCAGTAACAAGTGATAGATC+AGG 0.525337 1:+14127425 MsG0180000988.01.T01:three_prime_UTR
GATTATGTCCAGGCTGCTGC+CGG 0.530762 1:-14125231 None:intergenic
AGCTATCCCTTCTGAGACAT+CGG 0.534717 1:-14127155 None:intergenic
TCTATCACTTGTTACTGCAC+TGG 0.536855 1:-14127420 None:intergenic
AAGGTTTAGTAATATGGAGA+TGG 0.538000 1:+14125189 MsG0180000988.01.T01:CDS
CTCTTAGACTTCCGATCTCG+AGG 0.539438 1:-14126620 None:intergenic
TATAGGAGCTTATAATAAGA+AGG 0.540592 1:+14127209 MsG0180000988.01.T01:exon
GAACATGCTCATTGTCATCA+AGG 0.542897 1:-14126698 None:intergenic
AACGGCTTCAACGAAGTAGC+AGG 0.543380 1:-14127107 None:intergenic
TCACTTGCCGATGTCTCAGA+AGG 0.544169 1:+14127148 MsG0180000988.01.T01:CDS
TGTTAAGCATATTAGAGCAC+CGG 0.544425 1:+14125270 MsG0180000988.01.T01:CDS
ACCCTGAAATTATTGATGGA+AGG 0.546775 1:+14127020 MsG0180000988.01.T01:CDS
CTCAGCATCAGGATTATTGG+TGG 0.555236 1:+14126720 MsG0180000988.01.T01:CDS
TGTAAGCAGATGTGTTGTAA+GGG 0.557883 1:+14126593 MsG0180000988.01.T01:CDS
ATAATAAGAAGGTTCTTCCA+AGG 0.568200 1:+14127220 MsG0180000988.01.T01:three_prime_UTR
GAGAAGTTGATGTTAAATCA+GGG 0.568344 1:+14126640 MsG0180000988.01.T01:CDS
GTAAGGGGAAACCTCGAGAT+CGG 0.576734 1:+14126609 MsG0180000988.01.T01:CDS
CCAAGGACATATAGCTGCCA+CGG 0.577818 1:+14127237 MsG0180000988.01.T01:three_prime_UTR
GTAAGCAGATGTGTTGTAAG+GGG 0.581576 1:+14126594 MsG0180000988.01.T01:CDS
GAAGCACACTGATTATGTCC+AGG 0.586081 1:-14125241 None:intergenic
TGGAGGCTTAGGAGATGGAC+TGG 0.592248 1:+14127284 MsG0180000988.01.T01:three_prime_UTR
TATAAGATGGTTGTTGAACA+TGG 0.603801 1:+14127501 MsG0180000988.01.T01:three_prime_UTR
CATCTTTCAGAACTATTCGT+CGG 0.609496 1:+14126985 MsG0180000988.01.T01:intron
AATATATAAGAAGACATCAC+CGG 0.628118 1:+14125212 MsG0180000988.01.T01:CDS
CACTTGCCGATGTCTCAGAA+GGG 0.646121 1:+14127149 MsG0180000988.01.T01:CDS
AACCGCTGAAGCTTCATCCG+TGG 0.646785 1:-14127254 None:intergenic
TTTGTGGTGGATATACCCGA+GGG 0.646946 1:+14127067 MsG0180000988.01.T01:CDS
TGCCACGGATGAAGCTTCAG+CGG 0.648630 1:+14127252 MsG0180000988.01.T01:three_prime_UTR
CTCGATCAATTGGTTCGGTG+CGG 0.655165 1:-14127186 None:intergenic
CTGATCGAACCTTCTTACCA+AGG 0.687829 1:-14126550 None:intergenic
TTCCATCAATAATTTCAGGG+TGG 0.700428 1:-14127018 None:intergenic
CCATCTCCTAAGCCTCCATG+AGG 0.703495 1:-14127279 None:intergenic
TTGTGGTGGATATACCCGAG+GGG 0.768021 1:+14127068 MsG0180000988.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATTTTTATTTTA+TGG + Chr1:14125338-14125357 MsG0180000988.01.T01:intron 0.0%
!! AAATAAATAAAAAATAGTGA+TGG + Chr1:14125518-14125537 MsG0180000988.01.T01:intron 10.0%
!! TTATAAAAAAACACTATTTA+AGG - Chr1:14125500-14125519 None:intergenic 10.0%
!! AAAAAAAACAAAAGAAAGAA+GGG - Chr1:14125308-14125327 None:intergenic 15.0%
!! TAAAAAAAACAAAAGAAAGA+AGG - Chr1:14125309-14125328 None:intergenic 15.0%
!!! TTATCTTTTGTTATATATAC+TGG + Chr1:14127347-14127366 MsG0180000988.01.T01:three_prime_UTR 15.0%
!!! TTTTCATTTTTCTTTTATGA+TGG + Chr1:14126893-14126912 MsG0180000988.01.T01:intron 15.0%
!! AAGATAATCAATAGAGTAAA+TGG - Chr1:14127334-14127353 None:intergenic 20.0%
!! CATTATACAAAAATATTGTG+AGG - Chr1:14126471-14126490 None:intergenic 20.0%
!! TGTTGAGAAAATTAATAGTT+GGG + Chr1:14126049-14126068 MsG0180000988.01.T01:intron 20.0%
!! TTGTTGAGAAAATTAATAGT+TGG + Chr1:14126048-14126067 MsG0180000988.01.T01:intron 20.0%
!! TTTAAATAGAAAATGAAGAG+CGG - Chr1:14126166-14126185 None:intergenic 20.0%
!!! ACTATTAATTTTCTCAACAA+CGG - Chr1:14126048-14126067 None:intergenic 20.0%
!!! TTGCTTTATTACTCTTTAAA+GGG + Chr1:14126077-14126096 MsG0180000988.01.T01:intron 20.0%
!!! TTTTTTAAGAAGAATCGATT+CGG - Chr1:14126857-14126876 None:intergenic 20.0%
! AATATATAAGAAGACATCAC+CGG + Chr1:14125212-14125231 MsG0180000988.01.T01:CDS 25.0%
! AATTGGAAGGTTTAGTAATA+TGG + Chr1:14125183-14125202 MsG0180000988.01.T01:CDS 25.0%
! AGCAAACATAAGTAAATTAG+AGG - Chr1:14126810-14126829 None:intergenic 25.0%
! GAAAAAATCGAACTGAATTT+AGG - Chr1:14126404-14126423 None:intergenic 25.0%
! GGTTTATTTATTGTTAGGAT+TGG + Chr1:14125539-14125558 MsG0180000988.01.T01:intron 25.0%
! GTGATGGTTTATTTATTGTT+AGG + Chr1:14125534-14125553 MsG0180000988.01.T01:intron 25.0%
! GTTCTTCATTGTATATAAGA+TGG + Chr1:14127488-14127507 MsG0180000988.01.T01:three_prime_UTR 25.0%
! TAATTGGTATGAAATTTACG+AGG - Chr1:14126143-14126162 None:intergenic 25.0%
! TATAGGAGCTTATAATAAGA+AGG + Chr1:14127209-14127228 MsG0180000988.01.T01:exon 25.0%
! TGCTATTGAATAAAGAGTTT+CGG + Chr1:14126438-14126457 MsG0180000988.01.T01:intron 25.0%
! TTATTTATTGTTAGGATTGG+TGG + Chr1:14125542-14125561 MsG0180000988.01.T01:intron 25.0%
! TTGTGTTAGATATTCACTTA+AGG + Chr1:14125440-14125459 MsG0180000988.01.T01:intron 25.0%
!! ACTAGTAATTGAATCTTTTG+TGG + Chr1:14127051-14127070 MsG0180000988.01.T01:CDS 25.0%
!! CTTGCTTTATTACTCTTTAA+AGG + Chr1:14126076-14126095 MsG0180000988.01.T01:intron 25.0%
!! TTTGAGATTGCACTTAATAA+CGG - Chr1:14127128-14127147 None:intergenic 25.0%
!!! ACAATCTATTTTTGCATCTT+TGG + Chr1:14126198-14126217 MsG0180000988.01.T01:intron 25.0%
!!! ATTTTTTGTTTTTGGATGCA+TGG + Chr1:14125403-14125422 MsG0180000988.01.T01:intron 25.0%
!!! GAATGTTTTGATGATGTTTT+TGG + Chr1:14125816-14125835 MsG0180000988.01.T01:intron 25.0%
!!! GATGTTTTTGGTCTATTTTA+TGG + Chr1:14125828-14125847 MsG0180000988.01.T01:intron 25.0%
!!! GTGTGAAGATTTTTTGTTTT+TGG + Chr1:14125395-14125414 MsG0180000988.01.T01:intron 25.0%
!!! GTGTGTAGATTTATTTTGAT+TGG + Chr1:14127523-14127542 MsG0180000988.01.T01:three_prime_UTR 25.0%
!!! TAGATTTATTTTGATTGGTC+AGG + Chr1:14127528-14127547 MsG0180000988.01.T01:three_prime_UTR 25.0%
AAATAAACATCACACAACGA+GGG - Chr1:14126497-14126516 None:intergenic 30.0%
AAGGTTTAGTAATATGGAGA+TGG + Chr1:14125189-14125208 MsG0180000988.01.T01:CDS 30.0%
AGATATTCACTTAAGGTTGT+TGG + Chr1:14125447-14125466 MsG0180000988.01.T01:intron 30.0%
ATAATAAGAAGGTTCTTCCA+AGG + Chr1:14127220-14127239 MsG0180000988.01.T01:three_prime_UTR 30.0%
ATATCACTCAGATTAAAAGC+TGG - Chr1:14126961-14126980 None:intergenic 30.0%
CATGTGTAAAAATCTTGTAG+TGG + Chr1:14126221-14126240 MsG0180000988.01.T01:intron 30.0%
GTTTGTGTTAAGAAGAACTT+AGG + Chr1:14125915-14125934 MsG0180000988.01.T01:intron 30.0%
TAAATAAACATCACACAACG+AGG - Chr1:14126498-14126517 None:intergenic 30.0%
TACTACAAGTACAGAAAGAT+TGG + Chr1:14126671-14126690 MsG0180000988.01.T01:CDS 30.0%
TAGAGGAACAAAAAAGTTTC+TGG - Chr1:14126793-14126812 None:intergenic 30.0%
TATAAGATGGTTGTTGAACA+TGG + Chr1:14127501-14127520 MsG0180000988.01.T01:three_prime_UTR 30.0%
! AGTAATTGAATCTTTTGTGG+TGG + Chr1:14127054-14127073 MsG0180000988.01.T01:CDS 30.0%
! ATTTAGGTTCGCTTTGTAAT+TGG - Chr1:14126388-14126407 None:intergenic 30.0%
! TGGAATTTTGTAGTATGTGA+AGG - Chr1:14126941-14126960 None:intergenic 30.0%
!! ACAAATGGTTTGTACTTTTG+TGG - Chr1:14126576-14126595 None:intergenic 30.0%
!! AGAGAAGTTGATGTTAAATC+AGG + Chr1:14126639-14126658 MsG0180000988.01.T01:CDS 30.0%
!! GAGAAGTTGATGTTAAATCA+GGG + Chr1:14126640-14126659 MsG0180000988.01.T01:CDS 30.0%
!!! AAGTTTCTGGTCATTTTGTA+AGG - Chr1:14126780-14126799 None:intergenic 30.0%
!!! ATGCATTTTTAGCACATCAA+AGG + Chr1:14126286-14126305 MsG0180000988.01.T01:intron 30.0%
ACAACACATCTGCTTACAAA+TGG - Chr1:14126591-14126610 None:intergenic 35.0%
ACCCTGAAATTATTGATGGA+AGG + Chr1:14127020-14127039 MsG0180000988.01.T01:CDS 35.0%
AGAAAATGAAGAGCGGTAAT+TGG - Chr1:14126159-14126178 None:intergenic 35.0%
CATCTTTCAGAACTATTCGT+CGG + Chr1:14126985-14127004 MsG0180000988.01.T01:intron 35.0%
CTATACTCGATCAATTGGTT+CGG - Chr1:14127194-14127213 None:intergenic 35.0%
CTGATCTGCTACTATATCTT+CGG + Chr1:14125878-14125897 MsG0180000988.01.T01:intron 35.0%
GATTCAATTACTAGTGTTCC+TGG - Chr1:14127046-14127065 None:intergenic 35.0%
GCCTTCCATCAATAATTTCA+GGG - Chr1:14127024-14127043 None:intergenic 35.0%
TAGTAAAGAGCCAAGAAACA+CGG + Chr1:14125617-14125636 MsG0180000988.01.T01:intron 35.0%
TGTAAGCAGATGTGTTGTAA+GGG + Chr1:14126593-14126612 MsG0180000988.01.T01:CDS 35.0%
TGTTAAGCATATTAGAGCAC+CGG + Chr1:14125270-14125289 MsG0180000988.01.T01:CDS 35.0%
TTATCTGCTTTACCCTCTAA+AGG - Chr1:14126019-14126038 None:intergenic 35.0%
TTCCATCAATAATTTCAGGG+TGG - Chr1:14127021-14127040 None:intergenic 35.0%
TTGTAAGCAGATGTGTTGTA+AGG + Chr1:14126592-14126611 MsG0180000988.01.T01:CDS 35.0%
! AGATTTGCTTTCTCTAGGTA+TGG + Chr1:14126526-14126545 MsG0180000988.01.T01:intron 35.0%
! TGCTACTATATCTTCGGTTT+TGG + Chr1:14125884-14125903 MsG0180000988.01.T01:intron 35.0%
! TTAGGATTGGTGGTTTGATT+TGG + Chr1:14125552-14125571 MsG0180000988.01.T01:intron 35.0%
!! TTCAATCTGTTCTGAAGCAT+TGG + Chr1:14125778-14125797 MsG0180000988.01.T01:intron 35.0%
!!! GTCTAAGGGTTTTGTTTTCT+TGG + Chr1:14127462-14127481 MsG0180000988.01.T01:three_prime_UTR 35.0%
AAGCGAGCAATTTCCTTTAG+AGG + Chr1:14126003-14126022 MsG0180000988.01.T01:intron 40.0%
AGCGAGCAATTTCCTTTAGA+GGG + Chr1:14126004-14126023 MsG0180000988.01.T01:intron 40.0%
AGCTCCTATACTCGATCAAT+TGG - Chr1:14127199-14127218 None:intergenic 40.0%
CACTTAAGGTTGTTGGAACT+TGG + Chr1:14125454-14125473 MsG0180000988.01.T01:intron 40.0%
CATCAAAGGTTCGATCAGAT+TGG + Chr1:14126300-14126319 MsG0180000988.01.T01:intron 40.0%
CGAACCAATTGATCGAGTAT+AGG + Chr1:14127192-14127211 MsG0180000988.01.T01:CDS 40.0%
CTCCACCCTGAAATTATTGA+TGG + Chr1:14127016-14127035 MsG0180000988.01.T01:CDS 40.0%
CTTTCTGTACTTGTAGTAGC+AGG - Chr1:14126669-14126688 None:intergenic 40.0%
GAAATTATTGATGGAAGGCC+AGG + Chr1:14127025-14127044 MsG0180000988.01.T01:CDS 40.0%
GAACATGCTCATTGTCATCA+AGG - Chr1:14126701-14126720 None:intergenic 40.0%
GCAGTAACAAGTGATAGATC+AGG + Chr1:14127425-14127444 MsG0180000988.01.T01:three_prime_UTR 40.0%
GCTTGAACGAAGCTAAATCT+GGG - Chr1:14125987-14126006 None:intergenic 40.0%
GGCCTTCCATCAATAATTTC+AGG - Chr1:14127025-14127044 None:intergenic 40.0%
GTAAGCAGATGTGTTGTAAG+GGG + Chr1:14126594-14126613 MsG0180000988.01.T01:CDS 40.0%
GTTCTCAGCATCAGGATTAT+TGG + Chr1:14126717-14126736 MsG0180000988.01.T01:CDS 40.0%
TGCTTCTTGCAGTTGTCTAA+GGG + Chr1:14127448-14127467 MsG0180000988.01.T01:three_prime_UTR 40.0%
! AAGGTTCGATCAGATTGGTT+TGG + Chr1:14126305-14126324 MsG0180000988.01.T01:intron 40.0%
! TCTATCACTTGTTACTGCAC+TGG - Chr1:14127423-14127442 None:intergenic 40.0%
! TTTTGGATGCATGGTTGTTG+TGG + Chr1:14125412-14125431 MsG0180000988.01.T01:intron 40.0%
!! CGACGAATAGTTCTGAAAGA+TGG - Chr1:14126987-14127006 None:intergenic 40.0%
!! CTGAAGCATTGGTGTTACAT+AGG + Chr1:14125789-14125808 MsG0180000988.01.T01:intron 40.0%
!! GATTGGTGGTTTGATTTGGA+GGG + Chr1:14125556-14125575 MsG0180000988.01.T01:intron 40.0%
AAAGAAAGAAGGGCAACCTG+AGG - Chr1:14125298-14125317 None:intergenic 45.0%
ACGACGCTGACGAGTTATAT+TGG + Chr1:14125656-14125675 MsG0180000988.01.T01:intron 45.0%
AGAAACACGGACATGAGACA+CGG + Chr1:14125630-14125649 MsG0180000988.01.T01:intron 45.0%
AGGTATGGTCCTTGGTAAGA+AGG + Chr1:14126541-14126560 MsG0180000988.01.T01:intron 45.0%
ATGAGCATGTTCTCAGCATC+AGG + Chr1:14126709-14126728 MsG0180000988.01.T01:CDS 45.0%
CGCTTGAACGAAGCTAAATC+TGG - Chr1:14125988-14126007 None:intergenic 45.0%
CGTTTGACACCAACATGTGT+CGG + Chr1:14125741-14125760 MsG0180000988.01.T01:intron 45.0%
CTCAGCATCAGGATTATTGG+TGG + Chr1:14126720-14126739 MsG0180000988.01.T01:CDS 45.0%
CTGATCGAACCTTCTTACCA+AGG - Chr1:14126553-14126572 None:intergenic 45.0%
CTTTCTCTAGGTATGGTCCT+TGG + Chr1:14126533-14126552 MsG0180000988.01.T01:intron 45.0%
GATTCTTGTGAAGCATAGCG+TGG + Chr1:14125960-14125979 MsG0180000988.01.T01:intron 45.0%
GTGCTTCTTGCAGTTGTCTA+AGG + Chr1:14127447-14127466 MsG0180000988.01.T01:three_prime_UTR 45.0%
TGTCTCATGTCCGTGTTTCT+TGG - Chr1:14125630-14125649 None:intergenic 45.0%
TTTATGGTTGACCTGCTCTG+TGG + Chr1:14125844-14125863 MsG0180000988.01.T01:intron 45.0%
! CGCGTAGATTTGCTTTCTCT+AGG + Chr1:14126521-14126540 MsG0180000988.01.T01:intron 45.0%
! GAAGCACACTGATTATGTCC+AGG - Chr1:14125244-14125263 None:intergenic 45.0%
!! AGCTATCCCTTCTGAGACAT+CGG - Chr1:14127158-14127177 None:intergenic 45.0%
!! GGATTGGTGGTTTGATTTGG+AGG + Chr1:14125555-14125574 MsG0180000988.01.T01:intron 45.0%
!! GTTTGATTTGGAGGGAAGGT+TGG + Chr1:14125564-14125583 MsG0180000988.01.T01:intron 45.0%
!! TGGTGGTGATCATCGACTTA+CGG + Chr1:14126737-14126756 MsG0180000988.01.T01:CDS 45.0%
!! TTTGTGGTGGATATACCCGA+GGG + Chr1:14127067-14127086 MsG0180000988.01.T01:CDS 45.0%
!!! TTTTGTGGTGGATATACCCG+AGG + Chr1:14127066-14127085 MsG0180000988.01.T01:CDS 45.0%
AACGGCTTCAACGAAGTAGC+AGG - Chr1:14127110-14127129 None:intergenic 50.0%
ATCACATTGTGCCACAGAGC+AGG - Chr1:14125858-14125877 None:intergenic 50.0%
CACCAACATGTGTCGGATAC+TGG + Chr1:14125748-14125767 MsG0180000988.01.T01:intron 50.0%
CACTTGCCGATGTCTCAGAA+GGG + Chr1:14127149-14127168 MsG0180000988.01.T01:CDS 50.0%
CCAAGGACATATAGCTGCCA+CGG + Chr1:14127237-14127256 MsG0180000988.01.T01:three_prime_UTR 50.0%
CTCTTAGACTTCCGATCTCG+AGG - Chr1:14126623-14126642 None:intergenic 50.0%
GAAGTAGCAGGTCTCGTCTT+TGG - Chr1:14127098-14127117 None:intergenic 50.0%
GTAAGGGGAAACCTCGAGAT+CGG + Chr1:14126609-14126628 MsG0180000988.01.T01:CDS 50.0%
GTCCAGTATCCGACACATGT+TGG - Chr1:14125753-14125772 None:intergenic 50.0%
TCACTTGCCGATGTCTCAGA+AGG + Chr1:14127148-14127167 MsG0180000988.01.T01:CDS 50.0%
! AGCTTCAGCGGTTTTCCTCA+TGG + Chr1:14127264-14127283 MsG0180000988.01.T01:three_prime_UTR 50.0%
! GGTTTTCCTCATGGAGGCTT+AGG + Chr1:14127273-14127292 MsG0180000988.01.T01:three_prime_UTR 50.0%
! TTCAGCGGTTTTCCTCATGG+AGG + Chr1:14127267-14127286 MsG0180000988.01.T01:three_prime_UTR 50.0%
!! CTCGATCAATTGGTTCGGTG+CGG - Chr1:14127189-14127208 None:intergenic 50.0%
!! GGTGGTTTGATTTGGAGGGA+AGG + Chr1:14125560-14125579 MsG0180000988.01.T01:intron 50.0%
!! TATTAGAGCACCGGTTCCTC+AGG + Chr1:14125279-14125298 MsG0180000988.01.T01:intron 50.0%
!! TTGTGGTGGATATACCCGAG+GGG + Chr1:14127068-14127087 MsG0180000988.01.T01:CDS 50.0%
AACCGCTGAAGCTTCATCCG+TGG - Chr1:14127257-14127276 None:intergenic 55.0%
AGAAGGGCAACCTGAGGAAC+CGG - Chr1:14125292-14125311 None:intergenic 55.0%
CCATCTCCTAAGCCTCCATG+AGG - Chr1:14127282-14127301 None:intergenic 55.0%
CCGTGGCAGCTATATGTCCT+TGG - Chr1:14127240-14127259 None:intergenic 55.0%
CCTCATGGAGGCTTAGGAGA+TGG + Chr1:14127279-14127298 MsG0180000988.01.T01:three_prime_UTR 55.0%
GATTATGTCCAGGCTGCTGC+CGG - Chr1:14125234-14125253 None:intergenic 55.0%
TGCCACGGATGAAGCTTCAG+CGG + Chr1:14127252-14127271 MsG0180000988.01.T01:three_prime_UTR 55.0%
TGGAGGCTTAGGAGATGGAC+TGG + Chr1:14127284-14127303 MsG0180000988.01.T01:three_prime_UTR 55.0%
!! CTCGTCTTTGGTGTTCCCCT+CGG - Chr1:14127086-14127105 None:intergenic 55.0%
!! TCGTCTTTGGTGTTCCCCTC+GGG - Chr1:14127085-14127104 None:intergenic 55.0%
AGACATCACCGGCAGCAGCC+TGG + Chr1:14125223-14125242 MsG0180000988.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 14125175 14127600 14125175 ID=MsG0180000988.01;Name=MsG0180000988.01
Chr1 mRNA 14125175 14127600 14125175 ID=MsG0180000988.01.T01;Parent=MsG0180000988.01;Name=MsG0180000988.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0.5|0.66|1|1|1|3|387|183
Chr1 exon 14125175 14125291 14125175 ID=MsG0180000988.01.T01:exon:9651;Parent=MsG0180000988.01.T01
Chr1 exon 14126543 14126758 14126543 ID=MsG0180000988.01.T01:exon:9652;Parent=MsG0180000988.01.T01
Chr1 exon 14126995 14127600 14126995 ID=MsG0180000988.01.T01:exon:9653;Parent=MsG0180000988.01.T01
Chr1 CDS 14125175 14125291 14125175 ID=MsG0180000988.01.T01:cds;Parent=MsG0180000988.01.T01
Chr1 CDS 14126543 14126758 14126543 ID=MsG0180000988.01.T01:cds;Parent=MsG0180000988.01.T01
Chr1 CDS 14126995 14127213 14126995 ID=MsG0180000988.01.T01:cds;Parent=MsG0180000988.01.T01
Chr1 three_prime_UTR 14127214 14127600 14127214 ID=MsG0180000988.01.T01:three_prime_utr;Parent=MsG0180000988.01.T01
Gene Sequence

>MsG0180000988.01.T01

ATGAATGGAATTGGAAGGTTTAGTAATATGGAGATGGAATATATAAGAAGACATCACCGGCAGCAGCCTGGACATAATCAGTGTGCTTCTGCTCTTGTTAAGCATATTAGAGCACCGGTATGGTCCTTGGTAAGAAGGTTCGATCAGCCACAAAAGTACAAACCATTTGTAAGCAGATGTGTTGTAAGGGGAAACCTCGAGATCGGAAGTCTAAGAGAAGTTGATGTTAAATCAGGGCTTCCTGCTACTACAAGTACAGAAAGATTGGAGCTCCTTGATGACAATGAGCATGTTCTCAGCATCAGGATTATTGGTGGTGATCATCGACTTACGAACTATTCGTCGGTGATGTCTCTCCACCCTGAAATTATTGATGGAAGGCCAGGAACACTAGTAATTGAATCTTTTGTGGTGGATATACCCGAGGGGAACACCAAAGACGAGACCTGCTACTTCGTTGAAGCCGTTATTAAGTGCAATCTCAAATCACTTGCCGATGTCTCAGAAGGGATAGCTTTGCAAGACCGCACCGAACCAATTGATCGAGTATAG
Protein sequence

>MsG0180000988.01.T01

MNGIGRFSNMEMEYIRRHHRQQPGHNQCASALVKHIRAPVWSLVRRFDQPQKYKPFVSRCVVRGNLEIGSLREVDVKSGLPATTSTERLELLDDNEHVLSIRIIGGDHRLTNYSSVMSLHPEIIDGRPGTLVIESFVVDIPEGNTKDETCYFVEAVIKCNLKSLADVSEGIALQDRTEPIDRV*