AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001036.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001036.01.T01 MTR_1g029130 84.738 688 44 4 20 707 1 627 0.0 1178
MsG0180001036.01.T01 MTR_3g095910 79.070 344 71 1 364 707 295 637 0.0 581
MsG0180001036.01.T01 MTR_3g095910 49.505 303 140 5 1 302 4 294 1.15e-90 296
MsG0180001036.01.T01 MTR_1g019540 45.131 534 234 9 135 662 55 535 8.69e-161 475
MsG0180001036.01.T01 MTR_1g019540 45.131 534 234 9 135 662 108 588 2.61e-160 476
MsG0180001036.01.T01 MTR_1g019530 42.884 534 240 9 135 662 110 584 6.16e-147 441
MsG0180001036.01.T01 MTR_1g082880 38.095 588 286 11 90 664 28 550 3.46e-134 407
MsG0180001036.01.T01 MTR_7g113610 37.143 560 272 10 122 662 57 555 1.15e-127 390
MsG0180001036.01.T01 MTR_1g080460 34.973 183 113 5 357 536 8 187 1.01e-28 121
MsG0180001036.01.T01 MTR_7g115460 35.758 165 101 4 374 536 35 196 1.14e-26 115
MsG0180001036.01.T01 MTR_1g084670 26.923 260 134 9 370 585 18 265 1.21e-16 82.0
MsG0180001036.01.T01 MTR_1g084670 26.407 231 129 6 368 557 16 246 5.50e-16 79.3
MsG0180001036.01.T01 MTR_1g084670 32.500 120 78 1 368 484 16 135 1.14e-15 77.4
MsG0180001036.01.T01 MTR_7g109920 26.459 257 133 8 373 585 24 268 1.95e-15 78.6
MsG0180001036.01.T01 MTR_4g132185 25.854 205 113 3 370 535 19 223 2.63e-15 77.8
MsG0180001036.01.T01 MTR_7g109920 26.238 202 110 3 373 535 24 225 3.01e-15 77.0
MsG0180001036.01.T01 MTR_7g111850 24.016 254 139 7 375 585 26 268 8.66e-14 73.6
MsG0180001036.01.T01 MTR_1g084660 26.459 257 126 9 370 585 18 252 3.85e-13 71.2
MsG0180001036.01.T01 MTR_1g084660 25.877 228 121 6 368 557 16 233 2.41e-12 68.2
MsG0180001036.01.T01 MTR_5g012590 25.000 192 128 6 357 535 22 210 4.86e-12 69.3
MsG0180001036.01.T01 MTR_4g100950 24.855 173 121 4 372 535 36 208 1.16e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001036.01.T01 AT1G77130 84.259 324 50 1 360 682 271 594 0.0 585
MsG0180001036.01.T01 AT1G77130 50.329 304 114 8 4 302 3 274 5.01e-91 296
MsG0180001036.01.T01 AT3G18660 77.846 325 72 0 373 697 317 641 0.0 556
MsG0180001036.01.T01 AT3G18660 45.277 307 132 8 10 299 17 304 1.71e-67 234
MsG0180001036.01.T01 AT3G18660 77.846 325 72 0 373 697 316 640 0.0 556
MsG0180001036.01.T01 AT3G18660 45.277 307 131 8 10 299 17 303 1.71e-67 234
MsG0180001036.01.T01 AT3G18660 77.846 325 72 0 373 697 321 645 0.0 555
MsG0180001036.01.T01 AT3G18660 45.484 310 131 9 10 299 17 308 1.12e-66 232
MsG0180001036.01.T01 AT4G33330 45.251 537 236 6 135 667 43 525 3.69e-163 480
MsG0180001036.01.T01 AT4G33330 45.251 537 236 6 135 667 111 593 1.83e-162 481
MsG0180001036.01.T01 AT4G33330 45.251 537 236 6 135 667 122 604 3.21e-162 481
MsG0180001036.01.T01 AT4G33330 45.677 532 231 6 135 662 111 588 8.14e-162 481
MsG0180001036.01.T01 AT1G08990 42.086 537 250 10 135 664 79 561 5.75e-138 417
MsG0180001036.01.T01 AT1G54940 40.485 536 252 11 135 662 74 550 2.77e-133 405
MsG0180001036.01.T01 AT4G33330 43.358 399 169 6 135 529 122 467 5.79e-100 315
MsG0180001036.01.T01 AT5G18480 38.150 173 101 5 365 535 23 191 3.22e-30 126
MsG0180001036.01.T01 AT1G09350 27.407 270 139 8 361 585 3 260 8.12e-18 85.9
MsG0180001036.01.T01 AT1G60470 25.581 301 157 10 366 617 11 293 1.59e-17 85.1
MsG0180001036.01.T01 AT4G26250 24.013 304 170 9 373 632 24 310 7.40e-17 83.2
MsG0180001036.01.T01 AT1G56600 26.154 260 135 8 371 585 19 266 1.53e-16 82.0
MsG0180001036.01.T01 AT2G47180 23.323 313 179 9 349 617 5 300 4.94e-16 80.5
MsG0180001036.01.T01 AT1G60450 26.794 209 112 4 368 535 13 221 1.76e-15 79.0
MsG0180001036.01.T01 AT5G30500 24.017 229 126 4 344 532 3 223 3.38e-15 76.3
MsG0180001036.01.T01 AT5G30500 24.186 215 115 4 344 518 3 209 6.07e-14 73.9
MsG0180001036.01.T01 AT5G23790 22.006 309 180 9 368 632 16 307 4.07e-12 68.6
MsG0180001036.01.T01 AT2G35710 27.273 176 115 6 372 536 61 234 1.59e-11 66.6
MsG0180001036.01.T01 AT4G16600 24.017 229 145 8 332 536 7 230 3.00e-11 67.0
MsG0180001036.01.T01 AT2G35710 26.966 178 113 6 372 536 61 234 9.88e-11 65.1

Find 172 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTTCTTGAAACATTTC+TGG 0.133286 1:-14999881 MsG0180001036.01.T01:CDS
ATTGCTGTAGTTTCCTTTCT+TGG 0.140768 1:+14999584 None:intergenic
GCCGAATTGGAAAATTATTT+TGG 0.148185 1:-15002158 MsG0180001036.01.T01:CDS
TATGCTTCTGGTTCTGCTTT+TGG 0.153956 1:+15000203 None:intergenic
TTTCAAGAACATTAGTTATT+TGG 0.160948 1:+15001755 None:intergenic
TTTCCTATGGCTGATATTTC+AGG 0.192514 1:+15000065 None:intergenic
AATGAAGCGAATAGGGTTTA+AGG 0.214912 1:+15005095 None:intergenic
TTGCACATTTCAACTACTTA+TGG 0.215615 1:-14999994 MsG0180001036.01.T01:CDS
CAAGAGCCATATTGGCCTTA+TGG 0.222444 1:+15000538 None:intergenic
TCTTCTTCATCTATCCATTC+TGG 0.242049 1:+15001580 None:intergenic
TGACGTGGCTCAACGGTGTT+AGG 0.251716 1:+15004915 None:intergenic
TTCAAGAAGTTCATGTGTTT+TGG 0.260706 1:+14999891 None:intergenic
TTCCACTCGTTATATGCTTC+TGG 0.267699 1:+15000191 None:intergenic
TCCTTGCAAGTAAAGAGATT+TGG 0.288240 1:+15001337 None:intergenic
GCGACGAAAACTCGTCTCTT+TGG 0.290093 1:-14999834 MsG0180001036.01.T01:CDS
TCCTGATTCTTTGAATTGTA+TGG 0.290849 1:+15000228 None:intergenic
GGAGAGTATGTTATGGCATT+GGG 0.309950 1:-14999496 MsG0180001036.01.T01:CDS
GGCATTGGGGTGACAAGAAT+TGG 0.313543 1:-14999482 MsG0180001036.01.T01:CDS
CACGCTTTCAAGAGCCATAT+TGG 0.314466 1:+15000530 None:intergenic
GAAGGATAAGGACACATATC+AGG 0.317828 1:-15001728 MsG0180001036.01.T01:CDS
TGCAATTTATACTCCTATCT+TGG 0.320523 1:+15002182 None:intergenic
GATTATCAACTTCTTCATTC+AGG 0.320645 1:-15004890 MsG0180001036.01.T01:intron
AACGCGTGATCTCGTGATTC+TGG 0.330372 1:-15000309 MsG0180001036.01.T01:CDS
GAAGAAAGAGAAAACTTAGA+TGG 0.346178 1:+15005022 None:intergenic
TCCGAGATTACGACTGCAAC+TGG 0.347243 1:-14999752 MsG0180001036.01.T01:CDS
AAGTAAAGAGATTTGGAATT+GGG 0.351966 1:+15001344 None:intergenic
AGGCGACGAGGATGAGAAAA+AGG 0.356243 1:-14999856 MsG0180001036.01.T01:CDS
CAAGTAAAGAGATTTGGAAT+TGG 0.363595 1:+15001343 None:intergenic
TCCATACAATTCAAAGAATC+AGG 0.366674 1:-15000229 MsG0180001036.01.T01:CDS
GTATAAATTGCAAGCCGAAT+TGG 0.369269 1:-15002171 MsG0180001036.01.T01:CDS
AGGACTACATGCTCAGCTTC+TGG 0.371387 1:+15001649 None:intergenic
TCTTGAAAATTTGAAGGATA+AGG 0.375525 1:-15001740 MsG0180001036.01.T01:CDS
CTCTCTGAGTTTATGCAGGT+CGG 0.379464 1:+15001276 None:intergenic
CTAGTTAACTCCATGTATAC+TGG 0.381678 1:+15000485 None:intergenic
TAATGTTCTTGAAAATTTGA+AGG 0.384534 1:-15001746 MsG0180001036.01.T01:CDS
AAGAATGAGGTGGTCGAGAC+TGG 0.389452 1:+15005129 None:intergenic
CTTTGAATTTCCAGTATACA+TGG 0.391532 1:-15000495 MsG0180001036.01.T01:CDS
AAGCTTCCCTGCGACAAGTC+AGG 0.395485 1:-15001478 MsG0180001036.01.T01:CDS
TGAACTATCAGTTCCTTTGA+AGG 0.396557 1:-15001227 MsG0180001036.01.T01:CDS
CTTTATGTCATCCACTATCT+AGG 0.402882 1:-14999795 MsG0180001036.01.T01:CDS
TTTCCTGGTGCCTGAATCCT+AGG 0.405848 1:+15001526 None:intergenic
CACATGAACCAATAGGTAAC+TGG 0.406938 1:+15001248 None:intergenic
GAGAAGCTCCAGTTACCTAT+TGG 0.407327 1:-15001256 MsG0180001036.01.T01:CDS
TCCAACACTACCTAGGATTC+AGG 0.408343 1:-15001536 MsG0180001036.01.T01:CDS
GGGAGAGTATGTTATGGCAT+TGG 0.410396 1:-14999497 MsG0180001036.01.T01:CDS
AGGAGTGGCTTGGCAGCAGC+TGG 0.412642 1:-15000260 MsG0180001036.01.T01:CDS
CACATATTCCATTCCAAGAT+AGG 0.413633 1:-15002195 MsG0180001036.01.T01:CDS
TCCTTTGAAGGCTAAAGGTC+AGG 0.416391 1:-15001215 MsG0180001036.01.T01:CDS
GTCTTGCTGCTTCAATCTGC+AGG 0.421473 1:+15001425 None:intergenic
ATATTTCAGGCATCTCAAAA+AGG 0.428904 1:+15000078 None:intergenic
GAACTTCTTGAAACATTTCT+GGG 0.433094 1:-14999880 MsG0180001036.01.T01:CDS
GTTTCTGGGAGAGTATGTTA+TGG 0.438372 1:-14999503 MsG0180001036.01.T01:CDS
TGCGTTCCATAAGGCCAATA+TGG 0.444584 1:-15000544 MsG0180001036.01.T01:CDS
ATCCTACAATGGTGGTGACC+AGG 0.447256 1:-14999952 MsG0180001036.01.T01:CDS
GCGTTTGAAAACGTGCTTTG+AGG 0.447428 1:-14999532 MsG0180001036.01.T01:CDS
ATTACAGCAAATTTCGTCTC+TGG 0.450343 1:-15000169 MsG0180001036.01.T01:CDS
GGATTGTTGCATAAGCTTCT+CGG 0.451047 1:+15000399 None:intergenic
TCAGTTCCTTTGAAGGCTAA+AGG 0.454613 1:-15001220 MsG0180001036.01.T01:CDS
GATAGTTCACATGAACCAAT+AGG 0.459168 1:+15001241 None:intergenic
GCTCAAAGTATTCGAATGTC+TGG 0.460744 1:-15000335 MsG0180001036.01.T01:CDS
GACGTGGCTCAACGGTGTTA+GGG 0.461218 1:+15004916 None:intergenic
CTAGATAGTGGATGACATAA+AGG 0.461375 1:+14999796 None:intergenic
TGAATGAAGAAGTTGATAAT+CGG 0.465528 1:+15004892 None:intergenic
AAGAAAGAGAAAACTTAGAT+GGG 0.468184 1:+15005023 None:intergenic
TGCAGAAGTTCTGTTTGCTT+AGG 0.469003 1:-14999647 MsG0180001036.01.T01:CDS
TCCAAATCTCTTTACTTGCA+AGG 0.470250 1:-15001338 MsG0180001036.01.T01:CDS
AAGGATAAAGCGAATTTGAA+AGG 0.471690 1:+15005052 None:intergenic
TGCAGCGTGACGGGAATGCC+TGG 0.473934 1:-15001309 MsG0180001036.01.T01:CDS
AGACTTGCTGCGACTTCCAA+AGG 0.473992 1:-15001406 MsG0180001036.01.T01:CDS
AAACTTAGATGGGAATGAAA+AGG 0.479053 1:+15005033 None:intergenic
TGTTACTAGAAGCATAGTTC+AGG 0.483810 1:+15001623 None:intergenic
TCTGCACATATATATGTTTG+TGG 0.485140 1:-15000371 MsG0180001036.01.T01:CDS
TCTCTGAGTTTATGCAGGTC+GGG 0.486148 1:+15001277 None:intergenic
AGGATATTATGCAGCGTGAC+GGG 0.490590 1:-15001318 MsG0180001036.01.T01:CDS
GTTAGAGTGGGATCGTAGAC+AGG 0.496234 1:-14999607 MsG0180001036.01.T01:CDS
ATGTCTTAGTGCGTTCCATA+AGG 0.497278 1:-15000553 MsG0180001036.01.T01:CDS
CATATATATGTGCAGAGTGC+AGG 0.498763 1:+15000378 None:intergenic
GGCTCAACGGTGTTAGGGGT+GGG 0.500757 1:+15004921 None:intergenic
CCAGCGCCCTGACTTGTCGC+AGG 0.504978 1:+15001471 None:intergenic
ATGTAGCTCATGCGAGGTGG+TGG 0.505348 1:-14999698 MsG0180001036.01.T01:CDS
ATGCTTCTAGTAACATCACT+TGG 0.506425 1:-15001615 MsG0180001036.01.T01:CDS
GAAACTACAGCAATGGTCAC+TGG 0.506581 1:-14999575 MsG0180001036.01.T01:CDS
CAGTGTAGCATTGTTTCCTA+TGG 0.507446 1:+15000052 None:intergenic
TGGCTCAACGGTGTTAGGGG+TGG 0.508596 1:+15004920 None:intergenic
TGATCAGTATTATAAACTGC+TGG 0.510064 1:+15002094 None:intergenic
TTTATACTCCTATCTTGGAA+TGG 0.510475 1:+15002187 None:intergenic
AGGATAAAGCGAATTTGAAA+GGG 0.512894 1:+15005053 None:intergenic
ACTGTTCAACTCAGGTGTAA+TGG 0.513305 1:-15000033 MsG0180001036.01.T01:CDS
ACCCTGGTCACCACCATTGT+AGG 0.514384 1:+14999950 None:intergenic
ATGCACTGGATGAAACCCTT+TGG 0.516067 1:+15001390 None:intergenic
GCTTCTCTCTGAGTTTATGC+AGG 0.516546 1:+15001272 None:intergenic
AATACTTTGAGCTGCGGTGA+TGG 0.520044 1:+15000346 None:intergenic
TTCTTGAAACATTTCTGGGA+AGG 0.522014 1:-14999876 MsG0180001036.01.T01:CDS
TCCAGTTGCAGTCGTAATCT+CGG 0.522527 1:+14999751 None:intergenic
CATGTATACTGGAAATTCAA+AGG 0.524098 1:+15000496 None:intergenic
TTGACTTGATTCGAAGATGA+GGG 0.525592 1:-15004946 MsG0180001036.01.T01:exon
GAATAGGGTTTAAGGTGGAT+TGG 0.527174 1:+15005103 None:intergenic
AGCAGAAGGCAGCGTTAGAG+TGG 0.527478 1:-14999620 MsG0180001036.01.T01:CDS
GACTTGCTGCGACTTCCAAA+GGG 0.531841 1:-15001405 MsG0180001036.01.T01:CDS
TCCTGACCTTTAGCCTTCAA+AGG 0.531986 1:+15001214 None:intergenic
AGCTTCCCTGCGACAAGTCA+GGG 0.533888 1:-15001477 MsG0180001036.01.T01:CDS
GTGGCTTGGCAGCAGCTGGA+TGG 0.534926 1:-15000256 MsG0180001036.01.T01:CDS
CTACTTGTCCAACACTACCT+AGG 0.544561 1:-15001543 MsG0180001036.01.T01:CDS
GCCTGAATCCTAGGTAGTGT+TGG 0.546134 1:+15001535 None:intergenic
CCTGCGACAAGTCAGGGCGC+TGG 0.547118 1:-15001471 MsG0180001036.01.T01:CDS
TGATTATCACAGGAGTGGCT+TGG 0.547142 1:-15000270 MsG0180001036.01.T01:CDS
TGGATGACATAAAGGATTGG+TGG 0.547445 1:+14999804 None:intergenic
TATTATAAACTGCTGGAGGA+TGG 0.547827 1:+15002101 None:intergenic
CTGGAACGTGGACATTCTGC+AGG 0.550039 1:-14999733 MsG0180001036.01.T01:CDS
GATCGTAGACAGGCCAAGAA+AGG 0.550520 1:-14999597 MsG0180001036.01.T01:CDS
CGATATTTCTGAGTATAAGA+AGG 0.553853 1:+15000105 None:intergenic
TTCCTGTCGTTTACATATGT+AGG 0.555071 1:+15001835 None:intergenic
AAACAATAAGTGATTATCAC+AGG 0.557166 1:-15000280 MsG0180001036.01.T01:CDS
CTAGGTAGTGTTGGACAAGT+AGG 0.557193 1:+15001544 None:intergenic
ATGGTTTAGTACCTAGATAG+TGG 0.565355 1:+14999784 None:intergenic
AAGGACACATATCAGGGTGT+TGG 0.565940 1:-15001721 MsG0180001036.01.T01:CDS
GGCCTACATATGTAAACGAC+AGG 0.567340 1:-15001837 MsG0180001036.01.T01:CDS
GTCACGAAAAGTACATGCAC+TGG 0.569264 1:+15001376 None:intergenic
GGTGGATTGGATCAAGAATG+AGG 0.570011 1:+15005116 None:intergenic
AGTTGAAATGTGCAATTCGA+TGG 0.571909 1:+15000002 None:intergenic
CAGGTCGGGTTCATAAAGCC+AGG 0.574180 1:+15001291 None:intergenic
GAAGCGAATAGGGTTTAAGG+TGG 0.574232 1:+15005098 None:intergenic
TAATCGGTGACGTGGCTCAA+CGG 0.574534 1:+15004908 None:intergenic
AGCTCATGCGAGGTGGTGGA+AGG 0.575417 1:-14999694 MsG0180001036.01.T01:CDS
TTTGCTTAGGTCGAAGCAGA+AGG 0.575458 1:-14999634 MsG0180001036.01.T01:CDS
ACGTGGCTCAACGGTGTTAG+GGG 0.578176 1:+15004917 None:intergenic
TCCTACAATGGTGGTGACCA+GGG 0.581119 1:-14999951 MsG0180001036.01.T01:CDS
ATGCCTGAAATATCAGCCAT+AGG 0.584336 1:-15000068 MsG0180001036.01.T01:CDS
GGGAAGACTTGTATCCAGAA+TGG 0.585294 1:-15001594 MsG0180001036.01.T01:CDS
AAACAACCATGACTTGGAGT+TGG 0.587470 1:+15005162 None:intergenic
AGGATGGAAAATTGTAAGCA+AGG 0.589153 1:+15002117 None:intergenic
ACATATGTAAACGACAGGAA+TGG 0.596076 1:-15001832 MsG0180001036.01.T01:CDS
CAGCGCCCTGACTTGTCGCA+GGG 0.596806 1:+15001472 None:intergenic
CTACCTAGGATTCAGGCACC+AGG 0.597753 1:-15001529 MsG0180001036.01.T01:CDS
TTTGACTTGATTCGAAGATG+AGG 0.599388 1:-15004947 MsG0180001036.01.T01:exon
AAGGATATTATGCAGCGTGA+CGG 0.600793 1:-15001319 MsG0180001036.01.T01:CDS
TAGTGGATGACATAAAGGAT+TGG 0.601872 1:+14999801 None:intergenic
TGGTGGAAACAACCATGACT+TGG 0.602810 1:+15005156 None:intergenic
TTATGGAACGCACTAAGACA+TGG 0.602957 1:+15000555 None:intergenic
AATGAGATTGTATCCTACAA+TGG 0.606182 1:-14999963 MsG0180001036.01.T01:CDS
AAATTTCATTTAGATAACCC+TGG 0.606443 1:+14999934 None:intergenic
ACCGCTCCAACTCCAAGTCA+TGG 0.609545 1:-15005168 MsG0180001036.01.T01:five_prime_UTR
GCAGAAGGCAGCGTTAGAGT+GGG 0.609692 1:-14999619 MsG0180001036.01.T01:CDS
ATATATCAAACTCTATATCA+CGG 0.621311 1:-15002072 MsG0180001036.01.T01:intron
ATGAAAGTGAGATTGACCAC+TGG 0.622446 1:-15001684 MsG0180001036.01.T01:CDS
AACCAGAAGCATATAACGAG+TGG 0.623151 1:-15000193 MsG0180001036.01.T01:CDS
TGACTTGATTCGAAGATGAG+GGG 0.623649 1:-15004945 MsG0180001036.01.T01:exon
CTGGTACTAGCTGCTTCCAG+TGG 0.625456 1:+15001668 None:intergenic
TGGTCGAGACTGGAGAGTGG+TGG 0.625529 1:+15005139 None:intergenic
AAGAAAGGAAACTACAGCAA+TGG 0.626082 1:-14999582 MsG0180001036.01.T01:CDS
CATTCGAATACTTTGAGCTG+CGG 0.628095 1:+15000340 None:intergenic
ATTTCTGAGTATAAGAAGGT+CGG 0.628917 1:+15000109 None:intergenic
TAGAAGCATAGTTCAGGCGA+AGG 0.629094 1:+15001629 None:intergenic
AAGGATAAGGACACATATCA+GGG 0.632162 1:-15001727 MsG0180001036.01.T01:CDS
TGCTTCTAGTAACATCACTT+GGG 0.638241 1:-15001614 MsG0180001036.01.T01:CDS
ACCATGACTTGGAGTTGGAG+CGG 0.639507 1:+15005167 None:intergenic
AATGCTACACTGTTCAACTC+AGG 0.645973 1:-15000041 MsG0180001036.01.T01:CDS
GAGAGTATGTTATGGCATTG+GGG 0.651503 1:-14999495 MsG0180001036.01.T01:CDS
TAATCTCGGAAACAAAGCCA+TGG 0.656479 1:+14999765 None:intergenic
ACATTTCTGGGAAGGCGACG+AGG 0.659097 1:-14999868 MsG0180001036.01.T01:CDS
TTACGACTGCAACTGGAACG+TGG 0.659215 1:-14999745 MsG0180001036.01.T01:CDS
ACTATCTAGGTACTAAACCA+TGG 0.660025 1:-14999782 MsG0180001036.01.T01:CDS
CGAGCAATGTAGCTCATGCG+AGG 0.661213 1:-14999704 MsG0180001036.01.T01:CDS
ATAAGTGATTATCACAGGAG+TGG 0.662338 1:-15000275 MsG0180001036.01.T01:CDS
TCAGTATTATAAACTGCTGG+AGG 0.663878 1:+15002097 None:intergenic
GAAGTTGATAATCGGTGACG+TGG 0.670744 1:+15004900 None:intergenic
GCAATGTAGCTCATGCGAGG+TGG 0.689730 1:-14999701 MsG0180001036.01.T01:CDS
GTTCAACTCAGGTGTAATGG+TGG 0.709097 1:-15000030 MsG0180001036.01.T01:CDS
AGGTGGTCGAGACTGGAGAG+TGG 0.727252 1:+15005136 None:intergenic
GAGATTGTATCCTACAATGG+TGG 0.728088 1:-14999960 MsG0180001036.01.T01:CDS
GGATTGGATCAAGAATGAGG+TGG 0.743750 1:+15005119 None:intergenic
ACAGCAATAAGATCAAGACG+TGG 0.768801 1:+15001502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTAATTTTCATTTTTTT+TGG - Chr1:15000597-15000616 MsG0180001036.01.T01:intron 10.0%
!!! TTGTAATTTTTTTTCTTATT+TGG - Chr1:14999760-14999779 MsG0180001036.01.T01:CDS 10.0%
!!! TTTTCATTTATGTATAAATT+TGG - Chr1:15001759-15001778 MsG0180001036.01.T01:CDS 10.0%
!! AAAAGTTAAAAAAACAAATC+CGG + Chr1:15001588-15001607 None:intergenic 15.0%
!! ATTCAATTATATATTTGAAG+AGG - Chr1:15001997-15002016 MsG0180001036.01.T01:intron 15.0%
!! CAACAATAAACATAAAAATT+GGG + Chr1:15001426-15001445 None:intergenic 15.0%
!! TATATGGATATTTATTCTTT+GGG - Chr1:15002713-15002732 MsG0180001036.01.T01:intron 15.0%
!! TATTTGTATATTTCTCAATT+TGG - Chr1:14999787-14999806 MsG0180001036.01.T01:CDS 15.0%
!! TCAACAATAAACATAAAAAT+TGG + Chr1:15001427-15001446 None:intergenic 15.0%
!! TTATATGGATATTTATTCTT+TGG - Chr1:15002712-15002731 MsG0180001036.01.T01:intron 15.0%
!! TTGAGTGTAAAATTAAATTA+AGG - Chr1:15000347-15000366 MsG0180001036.01.T01:CDS 15.0%
!!! AAAATTAATTTTGACATCTT+TGG + Chr1:15000438-15000457 None:intergenic 15.0%
!!! ATTTTGGTTATTATTATCTT+GGG - Chr1:15002436-15002455 MsG0180001036.01.T01:intron 15.0%
!!! TATTTTGGTTATTATTATCT+TGG - Chr1:15002435-15002454 MsG0180001036.01.T01:intron 15.0%
!!! TGATTTTCTAAAATTATTAG+TGG - Chr1:14999974-14999993 MsG0180001036.01.T01:CDS 15.0%
!! AAAAAATGCAAATCAAATCA+AGG + Chr1:14999732-14999751 None:intergenic 20.0%
!! AAAGTTAAAAAAACAAATCC+GGG + Chr1:15001587-15001606 None:intergenic 20.0%
!! AATAAACATAAAAATTGGGT+AGG + Chr1:15001422-15001441 None:intergenic 20.0%
!! AGTCATACTCAAATAAAATT+GGG + Chr1:14999826-14999845 None:intergenic 20.0%
!! ATATATCAAACTCTATATCA+CGG - Chr1:15002506-15002525 MsG0180001036.01.T01:intron 20.0%
!! ATCTATGTATCAATGAATAT+GGG + Chr1:15001456-15001475 None:intergenic 20.0%
!! ATTAATTGAATCTTATTGTC+TGG - Chr1:15003982-15004001 MsG0180001036.01.T01:intron 20.0%
!! CAGCATTGTTAATAATAATT+TGG + Chr1:15002136-15002155 None:intergenic 20.0%
!! TAATGTTCTTGAAAATTTGA+AGG - Chr1:15002832-15002851 MsG0180001036.01.T01:intron 20.0%
!! TATCTATGTATCAATGAATA+TGG + Chr1:15001457-15001476 None:intergenic 20.0%
!! TCAATTATCCAAGAAAATAA+AGG - Chr1:15002033-15002052 MsG0180001036.01.T01:intron 20.0%
!! TGTTCATTAACATTGAAAAT+AGG + Chr1:15003569-15003588 None:intergenic 20.0%
!! TTCTGTGTAATTATATATGT+CGG + Chr1:14999949-14999968 None:intergenic 20.0%
!! TTTCAAGAACATTAGTTATT+TGG + Chr1:15002826-15002845 None:intergenic 20.0%
!!! ACCAAAATAATTTTCCAATT+CGG + Chr1:15002424-15002443 None:intergenic 20.0%
!!! ATCTAAATGAAATTTTCACA+TGG - Chr1:15004652-15004671 MsG0180001036.01.T01:intron 20.0%
!!! GTTAGTTTGTATTTTGAATT+TGG - Chr1:15000636-15000655 MsG0180001036.01.T01:intron 20.0%
!!! TACAAATTTTTGGTTCTAAA+TGG - Chr1:15000986-15001005 MsG0180001036.01.T01:intron 20.0%
!!! TTTTGAGTGTAAATTAATTC+TGG - Chr1:15000253-15000272 MsG0180001036.01.T01:CDS 20.0%
! AAACAATAAGTGATTATCAC+AGG - Chr1:15004298-15004317 MsG0180001036.01.T01:intron 25.0%
! AAAGCTGTTAATTAGAGTTA+TGG - Chr1:15001034-15001053 MsG0180001036.01.T01:intron 25.0%
! AAATTTCATTTAGATAACCC+TGG + Chr1:15004647-15004666 None:intergenic 25.0%
! AACCAATTTGAGAAATACAA+AGG + Chr1:15001392-15001411 None:intergenic 25.0%
! AAGAAAGAGAAAACTTAGAT+GGG + Chr1:14999558-14999577 None:intergenic 25.0%
! AAGTGTATGTTTGGTTAATA+TGG - Chr1:15000217-15000236 MsG0180001036.01.T01:CDS 25.0%
! AATCAATTATCCCAAAAGAA+GGG - Chr1:15001124-15001143 MsG0180001036.01.T01:intron 25.0%
! AATCAATTATCGCAAAAGAA+GGG - Chr1:15000895-15000914 MsG0180001036.01.T01:intron 25.0%
! ACATTAAGCAATAAGGTAAT+CGG + Chr1:15003940-15003959 None:intergenic 25.0%
! ACTTCTCTTTGTATCTTATA+TGG - Chr1:15002697-15002716 MsG0180001036.01.T01:intron 25.0%
! AGTGAGTTTATAAATGGATA+TGG - Chr1:15001154-15001173 MsG0180001036.01.T01:intron 25.0%
! ATAAAAGGTTATAGAAGTCT+CGG + Chr1:15003508-15003527 None:intergenic 25.0%
! ATGAAAATCACTCTACTAAT+TGG + Chr1:15002671-15002690 None:intergenic 25.0%
! ATTGCATTGAAAAACTATAG+CGG - Chr1:15000106-15000125 MsG0180001036.01.T01:CDS 25.0%
! CAAAATCAATTATACTCTAG+AGG - Chr1:15000410-15000429 MsG0180001036.01.T01:CDS 25.0%
! CATTGTTACTCAACAATAAT+TGG + Chr1:15001225-15001244 None:intergenic 25.0%
! CATTGTTGTCTTAATCATTT+GGG - Chr1:15002088-15002107 MsG0180001036.01.T01:CDS 25.0%
! CCAAATCAATTGATAAAACA+AGG + Chr1:15000841-15000860 None:intergenic 25.0%
! GAGTCATACTCAAATAAAAT+TGG + Chr1:14999827-14999846 None:intergenic 25.0%
! GCATTGTTGTCTAATTATTT+AGG - Chr1:15001177-15001196 MsG0180001036.01.T01:CDS 25.0%
! GTGAGTTTATAAATGGATAT+GGG - Chr1:15001155-15001174 MsG0180001036.01.T01:intron 25.0%
! TAGAAGAGTGAGTTTATAAA+TGG - Chr1:15001148-15001167 MsG0180001036.01.T01:intron 25.0%
! TCAGAAAATACATATAAGCT+AGG + Chr1:15002183-15002202 None:intergenic 25.0%
! TCTTGAAAATTTGAAGGATA+AGG - Chr1:15002838-15002857 MsG0180001036.01.T01:intron 25.0%
! TGCAAATTAACTATAGCATA+AGG + Chr1:15001787-15001806 None:intergenic 25.0%
! TTAGAAGACTGAGTTTATTA+GGG - Chr1:15002057-15002076 MsG0180001036.01.T01:intron 25.0%
! TTCCTTTGTATTTCTCAAAT+TGG - Chr1:15001387-15001406 MsG0180001036.01.T01:CDS 25.0%
! TTTAGAAGACTGAGTTTATT+AGG - Chr1:15002056-15002075 MsG0180001036.01.T01:intron 25.0%
! TTTCATAGTTGAAAGTTAGT+TGG + Chr1:15000682-15000701 None:intergenic 25.0%
!! AAGTAAAGAGATTTGGAATT+GGG + Chr1:15003237-15003256 None:intergenic 25.0%
!! ATTTGGCATTTTGTAATAAG+TGG - Chr1:15001806-15001825 MsG0180001036.01.T01:CDS 25.0%
!! CATCTTTTCTTAATATTGAC+TGG - Chr1:15002798-15002817 MsG0180001036.01.T01:intron 25.0%
!! GCATGGAAAATACAAATTTT+CGG - Chr1:15001903-15001922 MsG0180001036.01.T01:intron 25.0%
!! TAAATGAAATTTTCACATGG+TGG - Chr1:15004655-15004674 MsG0180001036.01.T01:intron 25.0%
!! TATTGTTCTAAGTGTATGTT+TGG - Chr1:15000208-15000227 MsG0180001036.01.T01:CDS 25.0%
!! TCTAAAATTATTAGTGGTGT+CGG - Chr1:14999980-14999999 MsG0180001036.01.T01:CDS 25.0%
!! TTAGCTTGAACACAAAAAAT+TGG + Chr1:15001613-15001632 None:intergenic 25.0%
!! TTCAACAGAAAATTTTCACT+CGG - Chr1:15004146-15004165 MsG0180001036.01.T01:intron 25.0%
!! TTTTCTTCAATATTCAGATC+TGG + Chr1:15003621-15003640 None:intergenic 25.0%
!!! ATTAGTTTCGTTTCTAAAGT+TGG - Chr1:15002561-15002580 MsG0180001036.01.T01:intron 25.0%
!!! CACAAATTTTTGGTTCTAAT+TGG - Chr1:15000757-15000776 MsG0180001036.01.T01:intron 25.0%
!!! CCTTGTTTTATCAATTGATT+TGG - Chr1:15000838-15000857 MsG0180001036.01.T01:intron 25.0%
!!! CTATTTTAGAAACTTTGAGT+TGG - Chr1:15001654-15001673 MsG0180001036.01.T01:CDS 25.0%
!!! CTTCTAAACCTTTATTTTCT+TGG + Chr1:15002044-15002063 None:intergenic 25.0%
!!! TAGGACTTTGTTTTCTTTTT+TGG - Chr1:15001196-15001215 MsG0180001036.01.T01:CDS 25.0%
!!! TGAATGAAGAAGTTGATAAT+CGG + Chr1:14999689-14999708 None:intergenic 25.0%
!!! TGATTTTTTTTCCTCTCTAT+TGG - Chr1:15002292-15002311 MsG0180001036.01.T01:intron 25.0%
!!! TGCTATAGTTAATTTGCATT+TGG - Chr1:15001789-15001808 MsG0180001036.01.T01:CDS 25.0%
!!! TTAGATATGAGAGCTATTTT+AGG - Chr1:15000520-15000539 MsG0180001036.01.T01:CDS 25.0%
AAACTTAGATGGGAATGAAA+AGG + Chr1:14999548-14999567 None:intergenic 30.0%
AACAGACCAAAATTCAAATC+AGG + Chr1:15001342-15001361 None:intergenic 30.0%
AAGGATAAAGCGAATTTGAA+AGG + Chr1:14999529-14999548 None:intergenic 30.0%
AATGAGATTGTATCCTACAA+TGG - Chr1:15004615-15004634 MsG0180001036.01.T01:intron 30.0%
ACAGACCAAAATTCAAATCA+GGG + Chr1:15001341-15001360 None:intergenic 30.0%
AGGATAAAGCGAATTTGAAA+GGG + Chr1:14999528-14999547 None:intergenic 30.0%
AGTGAAAAAATGAAGCGAAT+AGG + Chr1:14999494-14999513 None:intergenic 30.0%
ATATTTCAGGCATCTCAAAA+AGG + Chr1:15004503-15004522 None:intergenic 30.0%
ATTTCTGAGTATAAGAAGGT+CGG + Chr1:15004472-15004491 None:intergenic 30.0%
CATGTATACTGGAAATTCAA+AGG + Chr1:15004085-15004104 None:intergenic 30.0%
CATTGAACGAATCTTGAAAT+TGG - Chr1:15001862-15001881 MsG0180001036.01.T01:intron 30.0%
CTAACTTTCAACTATGAAAG+AGG - Chr1:15000683-15000702 MsG0180001036.01.T01:intron 30.0%
CTTTGAATTTCCAGTATACA+TGG - Chr1:15004083-15004102 MsG0180001036.01.T01:intron 30.0%
GAACTTCTTGAAACATTTCT+GGG - Chr1:15004698-15004717 MsG0180001036.01.T01:intron 30.0%
GAAGAAAGAGAAAACTTAGA+TGG + Chr1:14999559-14999578 None:intergenic 30.0%
GAATCAATTATCCCAAAAGA+AGG - Chr1:15001123-15001142 MsG0180001036.01.T01:intron 30.0%
GAATCAATTATCGCAAAAGA+AGG - Chr1:15000894-15000913 MsG0180001036.01.T01:intron 30.0%
GACATGAAACCATCAAATTT+AGG + Chr1:15002536-15002555 None:intergenic 30.0%
GAGAAGATCTCAAAAAAACA+AGG - Chr1:15002336-15002355 MsG0180001036.01.T01:intron 30.0%
GATTATCAACTTCTTCATTC+AGG - Chr1:14999688-14999707 MsG0180001036.01.T01:CDS 30.0%
GATTGAATGAATCTTGAGTT+TGG - Chr1:15000712-15000731 MsG0180001036.01.T01:intron 30.0%
GCATTGTTGTCTTAATCATT+TGG - Chr1:15002087-15002106 MsG0180001036.01.T01:CDS 30.0%
GTGAAAAAATGAAGCGAATA+GGG + Chr1:14999493-14999512 None:intergenic 30.0%
TAAGAAGCTAAACGTATGTT+TGG + Chr1:15000500-15000519 None:intergenic 30.0%
TAATCATCTATCTAAGGACA+GGG + Chr1:15001256-15001275 None:intergenic 30.0%
TAGAAGACTGAGTTTATTAG+GGG - Chr1:15002058-15002077 MsG0180001036.01.T01:intron 30.0%
TCAAGTAGAATCAATTCTAG+AGG - Chr1:15000387-15000406 MsG0180001036.01.T01:CDS 30.0%
TCCATACAATTCAAAGAATC+AGG - Chr1:15004349-15004368 MsG0180001036.01.T01:intron 30.0%
TCCTGATTCTTTGAATTGTA+TGG + Chr1:15004353-15004372 None:intergenic 30.0%
TCTGCACATATATATGTTTG+TGG - Chr1:15004207-15004226 MsG0180001036.01.T01:intron 30.0%
TGAACTTCTTGAAACATTTC+TGG - Chr1:15004697-15004716 MsG0180001036.01.T01:intron 30.0%
TGATCAGTATTATAAACTGC+TGG + Chr1:15002487-15002506 None:intergenic 30.0%
TGCAATTTATACTCCTATCT+TGG + Chr1:15002399-15002418 None:intergenic 30.0%
TTCTCTGACATTAAGCAATA+AGG + Chr1:15003947-15003966 None:intergenic 30.0%
TTGCACATTTCAACTACTTA+TGG - Chr1:15004584-15004603 MsG0180001036.01.T01:intron 30.0%
TTTATACTCCTATCTTGGAA+TGG + Chr1:15002394-15002413 None:intergenic 30.0%
! AGAAAATTTTCACTCGGAAA+GGG - Chr1:15004152-15004171 MsG0180001036.01.T01:intron 30.0%
! CAAATCAGGGTTCAAAATTT+TGG + Chr1:15001328-15001347 None:intergenic 30.0%
! CAAGTAAAGAGATTTGGAAT+TGG + Chr1:15003238-15003257 None:intergenic 30.0%
! CATTTTGTTCTGTTAGAAAC+TGG - Chr1:14999608-14999627 MsG0180001036.01.T01:CDS 30.0%
! CGATATTTCTGAGTATAAGA+AGG + Chr1:15004476-15004495 None:intergenic 30.0%
! GAGACTTCTATAACCTTTTA+TGG - Chr1:15003507-15003526 MsG0180001036.01.T01:intron 30.0%
! GAGTGAAAATTTTCTGTTGA+AGG + Chr1:15004147-15004166 None:intergenic 30.0%
! GCCGAATTGGAAAATTATTT+TGG - Chr1:15002420-15002439 MsG0180001036.01.T01:intron 30.0%
! GCGTAGCAAATACAAATTTT+TGG - Chr1:15000976-15000995 MsG0180001036.01.T01:intron 30.0%
! TATTTGCTACGCTTACTATT+CGG + Chr1:15000968-15000987 None:intergenic 30.0%
! TGGGATTCTGTTTTCTTTTT+TGG - Chr1:15002107-15002126 MsG0180001036.01.T01:CDS 30.0%
! TTCAAGAAGTTCATGTGTTT+TGG + Chr1:15004690-15004709 None:intergenic 30.0%
!! AGTTTTTCAATGCAATACAC+AGG + Chr1:15000102-15000121 None:intergenic 30.0%
!! ATATTTATTCTTTGGGTTGC+AGG - Chr1:15002720-15002739 MsG0180001036.01.T01:intron 30.0%
!! CTTTGAGGATTTTTGTTTCT+GGG - Chr1:15005061-15005080 MsG0180001036.01.T01:five_prime_UTR 30.0%
!! GTTTTTCAATGCAATACACA+GGG + Chr1:15000101-15000120 None:intergenic 30.0%
!! TGAAAAGTGCTAAAAGAACA+AGG + Chr1:15003431-15003450 None:intergenic 30.0%
!! TGATTTGAATTTTGGTCTGT+TGG - Chr1:15001341-15001360 MsG0180001036.01.T01:CDS 30.0%
!! TTGAACCCTGATTTGAATTT+TGG - Chr1:15001333-15001352 MsG0180001036.01.T01:CDS 30.0%
!!! GTTTTTTTGAGATCTTCTCT+TGG + Chr1:15002335-15002354 None:intergenic 30.0%
!!! TATCTGTTTTCTTTAGAACC+CGG - Chr1:15001566-15001585 MsG0180001036.01.T01:CDS 30.0%
!!! TCTTTTGGGATAATTGATTC+AGG + Chr1:15001123-15001142 None:intergenic 30.0%
AACAACAATACAAACCCACT+TGG + Chr1:15001537-15001556 None:intergenic 35.0%
AAGAAAGGAAACTACAGCAA+TGG - Chr1:15004996-15005015 MsG0180001036.01.T01:five_prime_UTR 35.0%
AAGGATAAGGACACATATCA+GGG - Chr1:15002851-15002870 MsG0180001036.01.T01:intron 35.0%
AAGGGAAAGTGATTTATGTC+TGG - Chr1:15000290-15000309 MsG0180001036.01.T01:CDS 35.0%
AATGAAGCGAATAGGGTTTA+AGG + Chr1:14999486-14999505 None:intergenic 35.0%
AATTATCGCAAAAGAAGGGT+TGG - Chr1:15000899-15000918 MsG0180001036.01.T01:intron 35.0%
ACAACAATACAAACCCACTT+GGG + Chr1:15001536-15001555 None:intergenic 35.0%
ACATATGTAAACGACAGGAA+TGG - Chr1:15002746-15002765 MsG0180001036.01.T01:intron 35.0%
ACCTGAATGAAGTTGACAAT+CGG + Chr1:15001288-15001307 None:intergenic 35.0%
ACTATCTAGGTACTAAACCA+TGG - Chr1:15004796-15004815 MsG0180001036.01.T01:intron 35.0%
AGGATGGAAAATTGTAAGCA+AGG + Chr1:15002464-15002483 None:intergenic 35.0%
AGTTGAAATGTGCAATTCGA+TGG + Chr1:15004579-15004598 None:intergenic 35.0%
ATAAGTGATTATCACAGGAG+TGG - Chr1:15004303-15004322 MsG0180001036.01.T01:intron 35.0%
ATGAACACAGATACTAGTCA+AGG - Chr1:15003582-15003601 MsG0180001036.01.T01:intron 35.0%
ATGCTTCTAGTAACATCACT+TGG - Chr1:15002963-15002982 MsG0180001036.01.T01:intron 35.0%
ATGGTTTAGTACCTAGATAG+TGG + Chr1:15004797-15004816 None:intergenic 35.0%
ATTACAGCAAATTTCGTCTC+TGG - Chr1:15004409-15004428 MsG0180001036.01.T01:intron 35.0%
ATTGCTGTAGTTTCCTTTCT+TGG + Chr1:15004997-15005016 None:intergenic 35.0%
CACATATTCCATTCCAAGAT+AGG - Chr1:15002383-15002402 MsG0180001036.01.T01:intron 35.0%
CACGGTATACCTAAATTTGA+TGG - Chr1:15002524-15002543 MsG0180001036.01.T01:intron 35.0%
CAGATCTGAATGTTGAAGAA+AGG - Chr1:15003696-15003715 MsG0180001036.01.T01:intron 35.0%
CTAATCATCTATCTAAGGAC+AGG + Chr1:15001257-15001276 None:intergenic 35.0%
CTAGTTAACTCCATGTATAC+TGG + Chr1:15004096-15004115 None:intergenic 35.0%
CTCAATCTCAAATTGCTACA+AGG + Chr1:15001696-15001715 None:intergenic 35.0%
CTGGTTAAAATTGAGCTGAA+GGG - Chr1:15000272-15000291 MsG0180001036.01.T01:CDS 35.0%
CTTTATGTCATCCACTATCT+AGG - Chr1:15004783-15004802 MsG0180001036.01.T01:intron 35.0%
CTTTCAACTATGAAAGAGGT+TGG - Chr1:15000687-15000706 MsG0180001036.01.T01:intron 35.0%
CTTTCTTCAACATTCAGATC+TGG + Chr1:15003698-15003717 None:intergenic 35.0%
GATAGTTCACATGAACCAAT+AGG + Chr1:15003340-15003359 None:intergenic 35.0%
GTATAAATTGCAAGCCGAAT+TGG - Chr1:15002407-15002426 MsG0180001036.01.T01:intron 35.0%
TATCTATGAGAAAGTCCAAG+CGG + Chr1:15002264-15002283 None:intergenic 35.0%
TATTATAAACTGCTGGAGGA+TGG + Chr1:15002480-15002499 None:intergenic 35.0%
TCAGTATTATAAACTGCTGG+AGG + Chr1:15002484-15002503 None:intergenic 35.0%
TCCAAATCTCTTTACTTGCA+AGG - Chr1:15003240-15003259 MsG0180001036.01.T01:intron 35.0%
TCCTTGCAAGTAAAGAGATT+TGG + Chr1:15003244-15003263 None:intergenic 35.0%
TCGTATTCATTCAAGAGATC+AGG - Chr1:15003793-15003812 MsG0180001036.01.T01:intron 35.0%
TCTGGTTAAAATTGAGCTGA+AGG - Chr1:15000271-15000290 MsG0180001036.01.T01:CDS 35.0%
TCTTCTTCATCTATCCATTC+TGG + Chr1:15003001-15003020 None:intergenic 35.0%
TGAACTATCAGTTCCTTTGA+AGG - Chr1:15003351-15003370 MsG0180001036.01.T01:intron 35.0%
TGCTTCTAGTAACATCACTT+GGG - Chr1:15002964-15002983 MsG0180001036.01.T01:intron 35.0%
TTGCGAATCATGGAAAATAG+CGG + Chr1:15002619-15002638 None:intergenic 35.0%
TTTCCTATGGCTGATATTTC+AGG + Chr1:15004516-15004535 None:intergenic 35.0%
! AAATTTTCACATGGTGGCAT+CGG - Chr1:15004661-15004680 MsG0180001036.01.T01:intron 35.0%
! ACTCTTCTAACCCTTCTTTT+GGG + Chr1:15001137-15001156 None:intergenic 35.0%
! AGTTTGATCTCCTCTAAAAG+TGG - Chr1:15000472-15000491 MsG0180001036.01.T01:CDS 35.0%
! CAGAAAATTTTCACTCGGAA+AGG - Chr1:15004151-15004170 MsG0180001036.01.T01:intron 35.0%
! GCGTAGCAAACACAAATTTT+TGG - Chr1:15000747-15000766 MsG0180001036.01.T01:intron 35.0%
! GGTTTAATCTTTAGCTTAGC+TGG - Chr1:15001362-15001381 MsG0180001036.01.T01:CDS 35.0%
! TAGTGGATGACATAAAGGAT+TGG + Chr1:15004780-15004799 None:intergenic 35.0%
! TGTTACTAGAAGCATAGTTC+AGG + Chr1:15002958-15002977 None:intergenic 35.0%
! TGTTTGCTACGCTTACTATT+CGG + Chr1:15000739-15000758 None:intergenic 35.0%
! TTCCTGTCGTTTACATATGT+AGG + Chr1:15002746-15002765 None:intergenic 35.0%
! TTCTTGAAACATTTCTGGGA+AGG - Chr1:15004702-15004721 MsG0180001036.01.T01:intron 35.0%
! TTGACTTGATTCGAAGATGA+GGG - Chr1:14999632-14999651 MsG0180001036.01.T01:CDS 35.0%
!! ATGTTTGGTTCCACTTTTAG+AGG + Chr1:15000485-15000504 None:intergenic 35.0%
!! CAATGTTTGTTTTCCCAACT+CGG - Chr1:15003728-15003747 MsG0180001036.01.T01:intron 35.0%
!! CTAGATAGTGGATGACATAA+AGG + Chr1:15004785-15004804 None:intergenic 35.0%
!! TTTGACTTGATTCGAAGATG+AGG - Chr1:14999631-14999650 MsG0180001036.01.T01:CDS 35.0%
!!! GCTTTGAGGATTTTTGTTTC+TGG - Chr1:15005060-15005079 MsG0180001036.01.T01:five_prime_UTR 35.0%
!!! TTTTGGTTCTAAATGGTGCT+AGG - Chr1:15000993-15001012 MsG0180001036.01.T01:intron 35.0%
!!! TTTTGGTTCTAATTGGTGCT+AGG - Chr1:15000764-15000783 MsG0180001036.01.T01:intron 35.0%
AACCGAAAAAGAAACGTGTG+CGG + Chr1:15003875-15003894 None:intergenic 40.0%
AACTCGGAGATGTTGCTAAT+TGG - Chr1:15003744-15003763 MsG0180001036.01.T01:intron 40.0%
AAGGATATTATGCAGCGTGA+CGG - Chr1:15003259-15003278 MsG0180001036.01.T01:intron 40.0%
AATGCTACACTGTTCAACTC+AGG - Chr1:15004537-15004556 MsG0180001036.01.T01:intron 40.0%
AATTAGCAACATCTCCGAGT+TGG + Chr1:15003745-15003764 None:intergenic 40.0%
ACACTAGGTTGTAACAAGCA+TGG - Chr1:15000047-15000066 MsG0180001036.01.T01:CDS 40.0%
ACAGCAATAAGATCAAGACG+TGG + Chr1:15003079-15003098 None:intergenic 40.0%
ACCGATTGTCAACTTCATTC+AGG - Chr1:15001284-15001303 MsG0180001036.01.T01:CDS 40.0%
ACTCGGAGATGTTGCTAATT+GGG - Chr1:15003745-15003764 MsG0180001036.01.T01:intron 40.0%
ACTGAGTTTATTAGGGGACA+TGG - Chr1:15002064-15002083 MsG0180001036.01.T01:intron 40.0%
ACTGTTCAACTCAGGTGTAA+TGG - Chr1:15004545-15004564 MsG0180001036.01.T01:intron 40.0%
ATAAGCTAGGCATCTATGCA+AGG + Chr1:15002170-15002189 None:intergenic 40.0%
ATGAAAGTGAGATTGACCAC+TGG - Chr1:15002894-15002913 MsG0180001036.01.T01:intron 40.0%
ATGCCTGAAATATCAGCCAT+AGG - Chr1:15004510-15004529 MsG0180001036.01.T01:intron 40.0%
ATGTCTTAGTGCGTTCCATA+AGG - Chr1:15004025-15004044 MsG0180001036.01.T01:intron 40.0%
ATTAGCAACATCTCCGAGTT+GGG + Chr1:15003744-15003763 None:intergenic 40.0%
ATTGGGAAAATGACCAGTGT+AGG - Chr1:15003762-15003781 MsG0180001036.01.T01:intron 40.0%
CACATGAACCAATAGGTAAC+TGG + Chr1:15003333-15003352 None:intergenic 40.0%
CAGAATAGTACGAGTAAGCA+TGG - Chr1:15001886-15001905 MsG0180001036.01.T01:intron 40.0%
CAGTGTAGCATTGTTTCCTA+TGG + Chr1:15004529-15004548 None:intergenic 40.0%
CATATATATGTGCAGAGTGC+AGG + Chr1:15004203-15004222 None:intergenic 40.0%
CATTCGAATACTTTGAGCTG+CGG + Chr1:15004241-15004260 None:intergenic 40.0%
CGTGGCTAATCATCTATCTA+AGG + Chr1:15001262-15001281 None:intergenic 40.0%
CTGAGTTTATTAGGGGACAT+GGG - Chr1:15002065-15002084 MsG0180001036.01.T01:intron 40.0%
GAAGGATAAGGACACATATC+AGG - Chr1:15002850-15002869 MsG0180001036.01.T01:intron 40.0%
GAGATTGTATCCTACAATGG+TGG - Chr1:15004618-15004637 MsG0180001036.01.T01:intron 40.0%
GGATTGTTGCATAAGCTTCT+CGG + Chr1:15004182-15004201 None:intergenic 40.0%
GTGTTGTCAATTGCGAATCA+TGG + Chr1:15002629-15002648 None:intergenic 40.0%
TAATCTCGGAAACAAAGCCA+TGG + Chr1:15004816-15004835 None:intergenic 40.0%
TACGAATTAATGCCCTACAC+TGG + Chr1:15003778-15003797 None:intergenic 40.0%
TATGAAACACGGACACTCTT+TGG - Chr1:14999898-14999917 MsG0180001036.01.T01:CDS 40.0%
TCAACTATGAAAGAGGTTGG+TGG - Chr1:15000690-15000709 MsG0180001036.01.T01:intron 40.0%
TGCAGAAGTTCTGTTTGCTT+AGG - Chr1:15004931-15004950 MsG0180001036.01.T01:CDS 40.0%
TGGATGACATAAAGGATTGG+TGG + Chr1:15004777-15004796 None:intergenic 40.0%
TTATGGAACGCACTAAGACA+TGG + Chr1:15004026-15004045 None:intergenic 40.0%
TTCCACTCGTTATATGCTTC+TGG + Chr1:15004390-15004409 None:intergenic 40.0%
TTGGGAAAATGACCAGTGTA+GGG - Chr1:15003763-15003782 MsG0180001036.01.T01:intron 40.0%
! AAACAACCATGACTTGGAGT+TGG + Chr1:14999419-14999438 None:intergenic 40.0%
! AACCAGAAGCATATAACGAG+TGG - Chr1:15004385-15004404 MsG0180001036.01.T01:intron 40.0%
! CACTCTTCTAACCCTTCTTT+TGG + Chr1:15001138-15001157 None:intergenic 40.0%
! CAGAACTTCTGCAAGTTTTC+TGG + Chr1:15004924-15004943 None:intergenic 40.0%
! GAATAGGGTTTAAGGTGGAT+TGG + Chr1:14999478-14999497 None:intergenic 40.0%
! GAGAGTATGTTATGGCATTG+GGG - Chr1:15005083-15005102 MsG0180001036.01.T01:five_prime_UTR 40.0%
! GCTCAAAGTATTCGAATGTC+TGG - Chr1:15004243-15004262 MsG0180001036.01.T01:intron 40.0%
! GGAGAGTATGTTATGGCATT+GGG - Chr1:15005082-15005101 MsG0180001036.01.T01:five_prime_UTR 40.0%
! GGAGATCAAACTGATTCTAG+AGG + Chr1:15000464-15000483 None:intergenic 40.0%
! GTTTCTGGGAGAGTATGTTA+TGG - Chr1:15005075-15005094 MsG0180001036.01.T01:five_prime_UTR 40.0%
! TCAAAGCACGTTTTCAAACG+CGG + Chr1:15005047-15005066 None:intergenic 40.0%
! TCAGTTCCTTTGAAGGCTAA+AGG - Chr1:15003358-15003377 MsG0180001036.01.T01:intron 40.0%
! TGACTTGATTCGAAGATGAG+GGG - Chr1:14999633-14999652 MsG0180001036.01.T01:CDS 40.0%
! TGCATTTTTCCGCAATGTCA+AGG + Chr1:15003461-15003480 None:intergenic 40.0%
!! AAAGAGTGTCCGTGTTTCAT+AGG + Chr1:14999899-14999918 None:intergenic 40.0%
!! TATAGCGGTTACTCTGAAGT+TGG - Chr1:15000121-15000140 MsG0180001036.01.T01:CDS 40.0%
!!! GATTTAGTTTTGACAGCAGC+AGG + Chr1:15005152-15005171 None:intergenic 40.0%
!!! TATGCTTCTGGTTCTGCTTT+TGG + Chr1:15004378-15004397 None:intergenic 40.0%
AAGGACACATATCAGGGTGT+TGG - Chr1:15002857-15002876 MsG0180001036.01.T01:intron 45.0%
AATACTTTGAGCTGCGGTGA+TGG + Chr1:15004235-15004254 None:intergenic 45.0%
AGGATATTATGCAGCGTGAC+GGG - Chr1:15003260-15003279 MsG0180001036.01.T01:intron 45.0%
ATGCACTGGATGAAACCCTT+TGG + Chr1:15003191-15003210 None:intergenic 45.0%
CAATACAAACCCACTTGGGT+TGG + Chr1:15001532-15001551 None:intergenic 45.0%
CAATGCAATTGCAGCTGCAT+CGG + Chr1:15003485-15003504 None:intergenic 45.0%
CAATGCGAACCTTGACATTG+CGG - Chr1:15003449-15003468 MsG0180001036.01.T01:intron 45.0%
CACGCTTTCAAGAGCCATAT+TGG + Chr1:15004051-15004070 None:intergenic 45.0%
CGGTTAGTAGTTAGCGATGT+GGG + Chr1:15003920-15003939 None:intergenic 45.0%
CTACTTGTCCAACACTACCT+AGG - Chr1:15003035-15003054 MsG0180001036.01.T01:intron 45.0%
CTCTCTGAGTTTATGCAGGT+CGG + Chr1:15003305-15003324 None:intergenic 45.0%
CTTCACTGCATCCAATAGAG+AGG + Chr1:15002306-15002325 None:intergenic 45.0%
GAAACTACAGCAATGGTCAC+TGG - Chr1:15005003-15005022 MsG0180001036.01.T01:five_prime_UTR 45.0%
GAAGCGAATAGGGTTTAAGG+TGG + Chr1:14999483-14999502 None:intergenic 45.0%
GAAGGGTTGGAACTTAGAAG+AGG - Chr1:15000912-15000931 MsG0180001036.01.T01:intron 45.0%
GAGAAGCTCCAGTTACCTAT+TGG - Chr1:15003322-15003341 MsG0180001036.01.T01:intron 45.0%
GCATAGAACAACCACAGTTG+CGG + Chr1:15003536-15003555 None:intergenic 45.0%
GCGTTTGAAAACGTGCTTTG+AGG - Chr1:15005046-15005065 MsG0180001036.01.T01:five_prime_UTR 45.0%
GCTTCTCTCTGAGTTTATGC+AGG + Chr1:15003309-15003328 None:intergenic 45.0%
GGATTGGATCAAGAATGAGG+TGG + Chr1:14999462-14999481 None:intergenic 45.0%
GGCCTACATATGTAAACGAC+AGG - Chr1:15002741-15002760 MsG0180001036.01.T01:intron 45.0%
GGGAAGACTTGTATCCAGAA+TGG - Chr1:15002984-15003003 MsG0180001036.01.T01:intron 45.0%
GGTTGGAACTTAGAAGAGGT+TGG - Chr1:15000916-15000935 MsG0180001036.01.T01:intron 45.0%
GTTCAACTCAGGTGTAATGG+TGG - Chr1:15004548-15004567 MsG0180001036.01.T01:intron 45.0%
TAGGCATCTATGCAAGGACA+AGG + Chr1:15002164-15002183 None:intergenic 45.0%
TCCAACACTACCTAGGATTC+AGG - Chr1:15003042-15003061 MsG0180001036.01.T01:intron 45.0%
TCCAGTTGCAGTCGTAATCT+CGG + Chr1:15004830-15004849 None:intergenic 45.0%
TCGGTTAGTAGTTAGCGATG+TGG + Chr1:15003921-15003940 None:intergenic 45.0%
TCTCTGAGTTTATGCAGGTC+GGG + Chr1:15003304-15003323 None:intergenic 45.0%
TGATTATCACAGGAGTGGCT+TGG - Chr1:15004308-15004327 MsG0180001036.01.T01:intron 45.0%
TGCGTTCCATAAGGCCAATA+TGG - Chr1:15004034-15004053 MsG0180001036.01.T01:intron 45.0%
TGGAACTTAGAAGAGGTTGG+TGG - Chr1:15000919-15000938 MsG0180001036.01.T01:intron 45.0%
TGGTGGAAACAACCATGACT+TGG + Chr1:14999425-14999444 None:intergenic 45.0%
TTTGCTTAGGTCGAAGCAGA+AGG - Chr1:15004944-15004963 MsG0180001036.01.T01:exon 45.0%
! AAGAAACGTGTGCGGCTTTT+AGG + Chr1:15003867-15003886 None:intergenic 45.0%
! ACGGACACTCTTTGGATTAG+AGG - Chr1:14999906-14999925 MsG0180001036.01.T01:CDS 45.0%
! AGATCAAGACGTGGTTTTCC+TGG + Chr1:15003070-15003089 None:intergenic 45.0%
! AGCCGCACACGTTTCTTTTT+CGG - Chr1:15003870-15003889 MsG0180001036.01.T01:intron 45.0%
! CAAAGCACGTTTTCAAACGC+GGG + Chr1:15005046-15005065 None:intergenic 45.0%
! CTAGGTAGTGTTGGACAAGT+AGG + Chr1:15003037-15003056 None:intergenic 45.0%
! GACCTAGTGGTAATTGGCTT+GGG + Chr1:15001510-15001529 None:intergenic 45.0%
! GATCTGGTACTTAGCATCGA+TGG + Chr1:15003682-15003701 None:intergenic 45.0%
! GGGAGAGTATGTTATGGCAT+TGG - Chr1:15005081-15005100 MsG0180001036.01.T01:five_prime_UTR 45.0%
! GTCACGAAAAGTACATGCAC+TGG + Chr1:15003205-15003224 None:intergenic 45.0%
! TAGAAGCATAGTTCAGGCGA+AGG + Chr1:15002952-15002971 None:intergenic 45.0%
! TCCTGACCTTTAGCCTTCAA+AGG + Chr1:15003367-15003386 None:intergenic 45.0%
! TCCTTTGAAGGCTAAAGGTC+AGG - Chr1:15003363-15003382 MsG0180001036.01.T01:intron 45.0%
!! CAAGAGCCATATTGGCCTTA+TGG + Chr1:15004043-15004062 None:intergenic 45.0%
!! CTTCTGCAAGTTTTCTGGCA+TGG + Chr1:15004919-15004938 None:intergenic 45.0%
!! GAAGTTGATAATCGGTGACG+TGG + Chr1:14999681-14999700 None:intergenic 45.0%
!! GGTGGATTGGATCAAGAATG+AGG + Chr1:14999465-14999484 None:intergenic 45.0%
!!! TTAGTTTTGACAGCAGCAGG+TGG + Chr1:15005149-15005168 None:intergenic 45.0%
!!! TTTTTTTTTTTTAAGAATTT+GGG + Chr1:15003828-15003847 None:intergenic 5.0%
!!! TTTTTTTTTTTTTAAGAATT+TGG + Chr1:15003829-15003848 None:intergenic 5.0%
AACGCGTGATCTCGTGATTC+TGG - Chr1:15004269-15004288 MsG0180001036.01.T01:intron 50.0%
AAGAATGAGGTGGTCGAGAC+TGG + Chr1:14999452-14999471 None:intergenic 50.0%
ACAGTTGCGGCAGCCATAAA+AGG + Chr1:15003523-15003542 None:intergenic 50.0%
AGGACTACATGCTCAGCTTC+TGG + Chr1:15002932-15002951 None:intergenic 50.0%
AGGCGACGAGGATGAGAAAA+AGG - Chr1:15004722-15004741 MsG0180001036.01.T01:intron 50.0%
GAAGTTGACAATCGGTGACG+TGG + Chr1:15001280-15001299 None:intergenic 50.0%
GATCGTAGACAGGCCAAGAA+AGG - Chr1:15004981-15005000 MsG0180001036.01.T01:five_prime_UTR 50.0%
GCCTGAATCCTAGGTAGTGT+TGG + Chr1:15003046-15003065 None:intergenic 50.0%
GCGACGAAAACTCGTCTCTT+TGG - Chr1:15004744-15004763 MsG0180001036.01.T01:intron 50.0%
GGACCTAGTGGTAATTGGCT+TGG + Chr1:15001511-15001530 None:intergenic 50.0%
GGGTTGGACCTAGTGGTAAT+TGG + Chr1:15001516-15001535 None:intergenic 50.0%
GTCCCAAGCCAATTACCACT+AGG - Chr1:15001505-15001524 MsG0180001036.01.T01:CDS 50.0%
GTTAGAGTGGGATCGTAGAC+AGG - Chr1:15004971-15004990 MsG0180001036.01.T01:five_prime_UTR 50.0%
TAATCGGTGACGTGGCTCAA+CGG + Chr1:14999673-14999692 None:intergenic 50.0%
TCCGAGATTACGACTGCAAC+TGG - Chr1:15004826-15004845 MsG0180001036.01.T01:intron 50.0%
TTACGACTGCAACTGGAACG+TGG - Chr1:15004833-15004852 MsG0180001036.01.T01:intron 50.0%
TTCATTGGAGCGGACACACT+AGG - Chr1:15000032-15000051 MsG0180001036.01.T01:CDS 50.0%
TTTCCTGGTGCCTGAATCCT+AGG + Chr1:15003055-15003074 None:intergenic 50.0%
! ATCCTACAATGGTGGTGACC+AGG - Chr1:15004626-15004645 MsG0180001036.01.T01:intron 50.0%
! CTGCTTCTTTTGTTGCCGCT+TGG - Chr1:15002246-15002265 MsG0180001036.01.T01:CDS 50.0%
! GGCATTGGGGTGACAAGAAT+TGG - Chr1:15005096-15005115 MsG0180001036.01.T01:five_prime_UTR 50.0%
! GTCTTGCTGCTTCAATCTGC+AGG + Chr1:15003156-15003175 None:intergenic 50.0%
! TCCTACAATGGTGGTGACCA+GGG - Chr1:15004627-15004646 MsG0180001036.01.T01:intron 50.0%
! TTTTATGGCTGCCGCAACTG+TGG - Chr1:15003522-15003541 MsG0180001036.01.T01:intron 50.0%
!! AGACTTGCTGCGACTTCCAA+AGG - Chr1:15003172-15003191 MsG0180001036.01.T01:intron 50.0%
!! GACTTGCTGCGACTTCCAAA+GGG - Chr1:15003173-15003192 MsG0180001036.01.T01:intron 50.0%
AAGCTTCCCTGCGACAAGTC+AGG - Chr1:15003100-15003119 MsG0180001036.01.T01:intron 55.0%
ACCACTAGGTCCAACCCAAG+TGG - Chr1:15001519-15001538 MsG0180001036.01.T01:CDS 55.0%
ACCCTGGTCACCACCATTGT+AGG + Chr1:15004631-15004650 None:intergenic 55.0%
AGCAGAAGGCAGCGTTAGAG+TGG - Chr1:15004958-15004977 MsG0180001036.01.T01:five_prime_UTR 55.0%
AGCTTCCCTGCGACAAGTCA+GGG - Chr1:15003101-15003120 MsG0180001036.01.T01:intron 55.0%
ATGAAGCGCGGATACGGACA+CGG + Chr1:15000017-15000036 None:intergenic 55.0%
ATGTAGCTCATGCGAGGTGG+TGG - Chr1:15004880-15004899 MsG0180001036.01.T01:intron 55.0%
CAGGTCGGGTTCATAAAGCC+AGG + Chr1:15003290-15003309 None:intergenic 55.0%
CCACTAGGTCCAACCCAAGT+GGG - Chr1:15001520-15001539 MsG0180001036.01.T01:CDS 55.0%
CGAGCAATGTAGCTCATGCG+AGG - Chr1:15004874-15004893 MsG0180001036.01.T01:intron 55.0%
CTACCTAGGATTCAGGCACC+AGG - Chr1:15003049-15003068 MsG0180001036.01.T01:intron 55.0%
CTGGAACGTGGACATTCTGC+AGG - Chr1:15004845-15004864 MsG0180001036.01.T01:intron 55.0%
CTGGTACTAGCTGCTTCCAG+TGG + Chr1:15002913-15002932 None:intergenic 55.0%
GCAATGTAGCTCATGCGAGG+TGG - Chr1:15004877-15004896 MsG0180001036.01.T01:intron 55.0%
GCAGAAGGCAGCGTTAGAGT+GGG - Chr1:15004959-15004978 MsG0180001036.01.T01:five_prime_UTR 55.0%
GCGAGCGGACCTATGAAACA+CGG - Chr1:14999887-14999906 MsG0180001036.01.T01:CDS 55.0%
GCTCCAATGAAGCGCGGATA+CGG + Chr1:15000023-15000042 None:intergenic 55.0%
GTATCCGCGCTTCATTGGAG+CGG - Chr1:15000022-15000041 MsG0180001036.01.T01:CDS 55.0%
TGACGTGGCTCAACGGTGTT+AGG + Chr1:14999666-14999685 None:intergenic 55.0%
TGTCCGTATCCGCGCTTCAT+TGG - Chr1:15000017-15000036 MsG0180001036.01.T01:CDS 55.0%
! ACATTTCTGGGAAGGCGACG+AGG - Chr1:15004710-15004729 MsG0180001036.01.T01:intron 55.0%
! ACGTGGCTCAACGGTGTTAG+GGG + Chr1:14999664-14999683 None:intergenic 55.0%
! GACGTGGCTCAACGGTGTTA+GGG + Chr1:14999665-14999684 None:intergenic 55.0%
!! GTGGTAATTGGCTTGGGACC+CGG + Chr1:15001504-15001523 None:intergenic 55.0%
!! TGGTAATTGGCTTGGGACCC+GGG + Chr1:15001503-15001522 None:intergenic 55.0%
AGGTGGTCGAGACTGGAGAG+TGG + Chr1:14999445-14999464 None:intergenic 60.0%
CGAGTGCATAGCAGAGCGAG+CGG - Chr1:14999872-14999891 MsG0180001036.01.T01:CDS 60.0%
CGCTCTGCTATGCACTCGAG+CGG + Chr1:14999870-14999889 None:intergenic 60.0%
GTGTCCGCTCCAATGAAGCG+CGG + Chr1:15000029-15000048 None:intergenic 60.0%
TCGAGCGCATAGCACACTCC+CGG - Chr1:15001482-15001501 MsG0180001036.01.T01:CDS 60.0%
TGGTCGAGACTGGAGAGTGG+TGG + Chr1:14999442-14999461 None:intergenic 60.0%
! GGCTCAACGGTGTTAGGGGT+GGG + Chr1:14999660-14999679 None:intergenic 60.0%
! TGGCTCAACGGTGTTAGGGG+TGG + Chr1:14999661-14999680 None:intergenic 60.0%
!! AGCTCATGCGAGGTGGTGGA+AGG - Chr1:15004884-15004903 MsG0180001036.01.T01:intron 60.0%
!! CCCACTTGGGTTGGACCTAG+TGG + Chr1:15001523-15001542 None:intergenic 60.0%
CGAGCGCATAGCACACTCCC+GGG - Chr1:15001483-15001502 MsG0180001036.01.T01:CDS 65.0%
! AGGAGTGGCTTGGCAGCAGC+TGG - Chr1:15004318-15004337 MsG0180001036.01.T01:intron 65.0%
! CAGCGCCCTGACTTGTCGCA+GGG + Chr1:15003109-15003128 None:intergenic 65.0%
! GTGGCTTGGCAGCAGCTGGA+TGG - Chr1:15004322-15004341 MsG0180001036.01.T01:intron 65.0%
! TGCAGCGTGACGGGAATGCC+TGG - Chr1:15003269-15003288 MsG0180001036.01.T01:intron 65.0%
CCTGCGACAAGTCAGGGCGC+TGG - Chr1:15003107-15003126 MsG0180001036.01.T01:intron 70.0%
! CCAGCGCCCTGACTTGTCGC+AGG + Chr1:15003110-15003129 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 14999413 15005187 14999413 ID=MsG0180001036.01;Name=MsG0180001036.01
Chr1 mRNA 14999413 15005187 14999413 ID=MsG0180001036.01.T01;Parent=MsG0180001036.01;Name=MsG0180001036.01.T01;_AED=0.39;_eAED=0.41;_QI=235|0.66|0.5|1|0.33|0.25|4|0|707
Chr1 exon 15004891 15005187 15004891 ID=MsG0180001036.01.T01:exon:4708;Parent=MsG0180001036.01.T01
Chr1 exon 15002073 15002279 15002073 ID=MsG0180001036.01.T01:exon:4709;Parent=MsG0180001036.01.T01
Chr1 exon 15001177 15001858 15001177 ID=MsG0180001036.01.T01:exon:4710;Parent=MsG0180001036.01.T01
Chr1 exon 14999413 15000585 14999413 ID=MsG0180001036.01.T01:exon:4711;Parent=MsG0180001036.01.T01
Chr1 five_prime_UTR 15004953 15005187 15004953 ID=MsG0180001036.01.T01:five_prime_utr;Parent=MsG0180001036.01.T01
Chr1 CDS 15004891 15004952 15004891 ID=MsG0180001036.01.T01:cds;Parent=MsG0180001036.01.T01
Chr1 CDS 15002073 15002279 15002073 ID=MsG0180001036.01.T01:cds;Parent=MsG0180001036.01.T01
Chr1 CDS 15001177 15001858 15001177 ID=MsG0180001036.01.T01:cds;Parent=MsG0180001036.01.T01
Chr1 CDS 14999413 15000585 14999413 ID=MsG0180001036.01.T01:cds;Parent=MsG0180001036.01.T01
Gene Sequence

>MsG0180001036.01.T01

ATGAGGGGTCCCACCCCTAACACCGTTGAGCCACGTCACCGATTATCAACTTCTTCATTCAGTGAAGATACTACCAAGAGAAGATCTCAAAAAAACAAGGATTTTAAAGATGTTGAGAAAGCATCACATATTCCATTCCAAGATAGGAGTATAAATTGCAAGCCGAATTGGAAAATTATTTTGGTTATTATTATCTTGGGAACCTTGCTTACAATTTTCCATCCTCCAGCAGTTTATAATACTGATCATATATCAAACTCTATATCACGGCCTACATATGTAAACGACAGGAATGGAGAGCTTGATAGAACTGATCTGCGTTATGCATCTTTTCTTAATATTGACTGGAACCAAATAACTAATGTTCTTGAAAATTTGAAGGATAAGGACACATATCAGGGTGTTGGCTTATTAAACTTCAATGAAAGTGAGATTGACCACTGGAAGCAGCTAGTACCAGAAGCTGAGCATGTAGTCCTTCGCCTGAACTATGCTTCTAGTAACATCACTTGGGAAGACTTGTATCCAGAATGGATAGATGAAGAAGAAGAGTATGAGTTTCCTACTTGTCCAACACTACCTAGGATTCAGGCACCAGGAAAACCACGTCTTGATCTTATTGCTGTTAAGCTTCCCTGCGACAAGTCAGGGCGCTGGTCAAGAGACGTAGCTCGTTTGCACCTGCAGATTGAAGCAGCAAGACTTGCTGCGACTTCCAAAGGGTTTCATCCAGTGCATGTACTTTTCGTGACTGATTGTTTCCCAATTCCAAATCTCTTTACTTGCAAGGATATTATGCAGCGTGACGGGAATGCCTGGCTTTATGAACCCGACCTGCATAAACTCAGAGAGAAGCTCCAGTTACCTATTGGTTCATGTGAACTATCAGTTCCTTTGAAGGCTAAAGGTCAGGACGATGAACTTCTTTTATTTCTATGTTGCGTGTACTTTCATAAAAACCATGTCTTAGTGCGTTCCATAAGGCCAATATGGCTCTTGAAAGCGTGTTATTTCATTTCCTTTGAATTTCCAGTATACATGGAGTTAACTAGATATACTGATCAGAGACTAACTGTCTTACCTTCAACAGAAAATTTTCACTCGGAAAGGGCACACCGAGAAGCTTATGCAACAATCCTGCACTCTGCACATATATATGTTTGTGGAGCCATCACCGCAGCTCAAAGTATTCGAATGTCTGGTTCAACGCGTGATCTCGTGATTCTGGTTGATGAAACAATAAGTGATTATCACAGGAGTGGCTTGGCAGCAGCTGGATGGAAGATCCATACAATTCAAAGAATCAGGAATCCAAAAGCAGAACCAGAAGCATATAACGAGTGGAATTACAGCAAATTTCGTCTCTGGCAGTTAACAGATTATGACAAAATCATTTTCATTGACGCCGACCTTCTTATACTCAGAAATATCGATTTCCTTTTTGAGATGCCTGAAATATCAGCCATAGGAAACAATGCTACACTGTTCAACTCAGGTGTAATGGTGGTTGAGCCATCGAATTGCACATTTCAACTACTTATGGATCACATTAATGAGATTGTATCCTACAATGGTGGTGACCAGGGTTATCTAAATGAAATTTTCACATGGTGGCATCGGATTCCAAAACACATGAACTTCTTGAAACATTTCTGGGAAGGCGACGAGGATGAGAAAAAGGCGACGAAAACTCGTCTCTTTGGAGCTGATCCACCAATCCTTTATGTCATCCACTATCTAGGTACTAAACCATGGCTTTGTTTCCGAGATTACGACTGCAACTGGAACGTGGACATTCTGCAGGAGTTTGCGAGCAATGTAGCTCATGCGAGGTGGTGGAAGGTTCACGACGCCATGCCAGAAAACTTGCAGAAGTTCTGTTTGCTTAGGTCGAAGCAGAAGGCAGCGTTAGAGTGGGATCGTAGACAGGCCAAGAAAGGAAACTACAGCAATGGTCACTGGAAAATTAAGATAAAAGACCCGCGTTTGAAAACGTGCTTTGAGGATTTTTGTTTCTGGGAGAGTATGTTATGGCATTGGGGTGACAAGAATTGGACAGATAATTCTACTGTTAACAATTTGCCACCTGCTGCTGTCAAAACTAAATCTCTATCTTCTTTATGA
Protein sequence

>MsG0180001036.01.T01

MRGPTPNTVEPRHRLSTSSFSEDTTKRRSQKNKDFKDVEKASHIPFQDRSINCKPNWKIILVIIILGTLLTIFHPPAVYNTDHISNSISRPTYVNDRNGELDRTDLRYASFLNIDWNQITNVLENLKDKDTYQGVGLLNFNESEIDHWKQLVPEAEHVVLRLNYASSNITWEDLYPEWIDEEEEYEFPTCPTLPRIQAPGKPRLDLIAVKLPCDKSGRWSRDVARLHLQIEAARLAATSKGFHPVHVLFVTDCFPIPNLFTCKDIMQRDGNAWLYEPDLHKLREKLQLPIGSCELSVPLKAKGQDDELLLFLCCVYFHKNHVLVRSIRPIWLLKACYFISFEFPVYMELTRYTDQRLTVLPSTENFHSERAHREAYATILHSAHIYVCGAITAAQSIRMSGSTRDLVILVDETISDYHRSGLAAAGWKIHTIQRIRNPKAEPEAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEISAIGNNATLFNSGVMVVEPSNCTFQLLMDHINEIVSYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEDEKKATKTRLFGADPPILYVIHYLGTKPWLCFRDYDCNWNVDILQEFASNVAHARWWKVHDAMPENLQKFCLLRSKQKAALEWDRRQAKKGNYSNGHWKIKIKDPRLKTCFEDFCFWESMLWHWGDKNWTDNSTVNNLPPAAVKTKSLSSL*