Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001127.01.T01 | AES99600.1 | 72.628 | 274 | 56 | 3 | 9 | 263 | 239 | 512 | 4.17E-111 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001127.01.T01 | Q8GT75 | 65.079 | 126 | 44 | 0 | 230 | 355 | 108 | 233 | 5.59E-52 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001127.01.T01 | A0A072UFT7 | 72.628 | 274 | 56 | 3 | 9 | 263 | 239 | 512 | 1.84e-110 | 352 |
| MsG0180001127.01.T01 | G7K240 | 72.628 | 274 | 56 | 3 | 9 | 263 | 239 | 512 | 1.99e-111 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001127.01 | MsG0480021350.01 | 0.816511 | 5.327104e-52 | 3.782049e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001127.01.T01 | MTR_5g082700 | 72.628 | 274 | 56 | 3 | 9 | 263 | 239 | 512 | 5.05e-115 | 351 |
| MsG0180001127.01.T01 | MTR_5g082700 | 72.628 | 274 | 56 | 3 | 9 | 263 | 239 | 512 | 2.84e-114 | 351 |
| MsG0180001127.01.T01 | MTR_5g082700 | 72.628 | 274 | 56 | 3 | 9 | 263 | 239 | 512 | 4.66e-114 | 352 |
| MsG0180001127.01.T01 | MTR_8g074900 | 78.571 | 126 | 20 | 1 | 230 | 355 | 104 | 222 | 2.03e-64 | 207 |
| MsG0180001127.01.T01 | MTR_5g022920 | 67.460 | 126 | 40 | 1 | 230 | 355 | 107 | 231 | 3.08e-53 | 179 |
| MsG0180001127.01.T01 | MTR_6g074905 | 61.468 | 109 | 34 | 1 | 134 | 234 | 859 | 967 | 6.20e-34 | 136 |
| MsG0180001127.01.T01 | MTR_8g069620 | 58.000 | 100 | 34 | 1 | 143 | 234 | 14 | 113 | 6.22e-27 | 107 |
| MsG0180001127.01.T01 | MTR_6g074870 | 44.966 | 149 | 57 | 4 | 94 | 234 | 67 | 198 | 5.68e-24 | 103 |
| MsG0180001127.01.T01 | MTR_4g108830 | 37.692 | 130 | 65 | 4 | 234 | 355 | 95 | 216 | 2.21e-18 | 84.3 |
| MsG0180001127.01.T01 | MTR_3g091310 | 78.000 | 50 | 11 | 0 | 351 | 400 | 543 | 592 | 5.87e-18 | 87.4 |
| MsG0180001127.01.T01 | MTR_3g091310 | 78.000 | 50 | 11 | 0 | 351 | 400 | 449 | 498 | 6.11e-18 | 87.4 |
| MsG0180001127.01.T01 | MTR_6g074640 | 48.454 | 97 | 44 | 1 | 153 | 249 | 11 | 101 | 2.63e-16 | 78.6 |
| MsG0180001127.01.T01 | MTR_4g030880 | 43.750 | 96 | 28 | 3 | 367 | 461 | 297 | 367 | 1.46e-14 | 76.3 |
| MsG0180001127.01.T01 | MTR_4g108830 | 34.821 | 112 | 60 | 3 | 249 | 355 | 85 | 188 | 3.72e-14 | 71.2 |
| MsG0180001127.01.T01 | MTR_5g092790 | 30.921 | 152 | 81 | 6 | 211 | 355 | 93 | 227 | 3.00e-13 | 69.7 |
| MsG0180001127.01.T01 | MTR_0024s0320 | 58.491 | 53 | 21 | 1 | 387 | 438 | 110 | 162 | 2.72e-12 | 65.1 |
| MsG0180001127.01.T01 | MTR_1g008230 | 50.769 | 65 | 29 | 1 | 338 | 402 | 502 | 563 | 6.93e-12 | 68.6 |
| MsG0180001127.01.T01 | MTR_1g008230 | 50.769 | 65 | 29 | 1 | 338 | 402 | 224 | 285 | 9.37e-12 | 67.8 |
| MsG0180001127.01.T01 | MTR_5g092750 | 34.646 | 127 | 71 | 5 | 235 | 355 | 107 | 227 | 1.25e-11 | 64.7 |
| MsG0180001127.01.T01 | MTR_4g120270 | 32.927 | 82 | 50 | 1 | 279 | 360 | 75 | 151 | 1.68e-11 | 65.1 |
| MsG0180001127.01.T01 | MTR_5g030010 | 35.106 | 94 | 54 | 1 | 270 | 363 | 112 | 198 | 2.44e-11 | 65.5 |
| MsG0180001127.01.T01 | MTR_7g076250 | 31.783 | 129 | 65 | 5 | 233 | 355 | 21 | 132 | 4.92e-11 | 62.4 |
| MsG0180001127.01.T01 | MTR_8g066780 | 38.095 | 84 | 51 | 1 | 284 | 367 | 114 | 196 | 8.22e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001127.01.T01 | AT4G35840 | 65.079 | 126 | 44 | 0 | 230 | 355 | 108 | 233 | 5.70e-53 | 178 |
| MsG0180001127.01.T01 | AT2G17730 | 63.492 | 126 | 46 | 0 | 230 | 355 | 113 | 238 | 9.30e-51 | 172 |
| MsG0180001127.01.T01 | AT5G66070 | 62.698 | 126 | 42 | 1 | 230 | 355 | 98 | 218 | 4.94e-48 | 165 |
| MsG0180001127.01.T01 | AT5G66070 | 62.698 | 126 | 42 | 1 | 230 | 355 | 98 | 218 | 4.94e-48 | 165 |
| MsG0180001127.01.T01 | AT4G35840 | 51.899 | 158 | 44 | 1 | 230 | 355 | 108 | 265 | 2.69e-46 | 162 |
| MsG0180001127.01.T01 | AT2G17730 | 63.025 | 119 | 44 | 0 | 230 | 348 | 113 | 231 | 1.13e-45 | 159 |
| MsG0180001127.01.T01 | AT5G66070 | 52.667 | 150 | 42 | 2 | 230 | 355 | 98 | 242 | 1.14e-42 | 151 |
| MsG0180001127.01.T01 | AT2G40120 | 52.083 | 144 | 50 | 3 | 139 | 263 | 227 | 370 | 4.76e-34 | 135 |
| MsG0180001127.01.T01 | AT1G73460 | 59.633 | 109 | 36 | 1 | 134 | 234 | 819 | 927 | 6.61e-33 | 133 |
| MsG0180001127.01.T01 | AT1G73460 | 59.633 | 109 | 36 | 1 | 134 | 234 | 819 | 927 | 6.61e-33 | 133 |
| MsG0180001127.01.T01 | AT1G73450 | 59.633 | 109 | 36 | 1 | 134 | 234 | 802 | 910 | 7.75e-33 | 133 |
| MsG0180001127.01.T01 | AT3G17750 | 56.881 | 109 | 39 | 1 | 134 | 234 | 788 | 896 | 1.03e-30 | 126 |
| MsG0180001127.01.T01 | AT5G66070 | 57.303 | 89 | 33 | 1 | 230 | 318 | 98 | 181 | 3.77e-24 | 99.8 |
| MsG0180001127.01.T01 | AT1G74410 | 37.705 | 122 | 73 | 1 | 234 | 355 | 100 | 218 | 7.61e-21 | 91.3 |
| MsG0180001127.01.T01 | AT5G66070 | 45.133 | 113 | 33 | 2 | 230 | 318 | 98 | 205 | 4.31e-19 | 86.3 |
| MsG0180001127.01.T01 | AT3G20395 | 32.520 | 123 | 77 | 2 | 235 | 356 | 97 | 214 | 1.35e-14 | 73.6 |
| MsG0180001127.01.T01 | AT3G16720 | 31.250 | 96 | 62 | 1 | 279 | 374 | 89 | 180 | 2.28e-12 | 68.2 |
| MsG0180001127.01.T01 | AT3G18773 | 38.462 | 78 | 46 | 1 | 278 | 355 | 97 | 172 | 9.20e-12 | 65.1 |
| MsG0180001127.01.T01 | AT1G49200 | 40.541 | 74 | 42 | 1 | 282 | 355 | 107 | 178 | 1.06e-11 | 65.1 |
Find 105 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAGCTACCTTAATTTAA+AGG | 0.143063 | 1:-16340665 | MsG0180001127.01.T01:CDS |
| GCTTAATTTCCTTTAAATTA+AGG | 0.237843 | 1:+16340656 | None:intergenic |
| TTAAGGTAGCTAATGTTTAT+AGG | 0.288253 | 1:+16340673 | None:intergenic |
| ACAGAAAAGCAAGCACTTAA+TGG | 0.303631 | 1:-16339324 | MsG0180001127.01.T01:intron |
| TTCCTGTTCAATTTGCCTTC+AGG | 0.305106 | 1:-16339568 | MsG0180001127.01.T01:CDS |
| TACTCACTGTCTCTGCATAA+TGG | 0.320754 | 1:+16339447 | None:intergenic |
| GGTTAAACGTATGATGATAA+TGG | 0.326660 | 1:+16339511 | None:intergenic |
| GAGGGTGGTCTCTTGTTCAT+TGG | 0.339243 | 1:-16339107 | MsG0180001127.01.T01:CDS |
| CACTTGTGATTGAGACTATT+GGG | 0.340792 | 1:+16339622 | None:intergenic |
| AAGGTTCCAAATTAAGAGAT+TGG | 0.344326 | 1:-16339287 | MsG0180001127.01.T01:CDS |
| GTTAAACGTATGATGATAAT+GGG | 0.346709 | 1:+16339512 | None:intergenic |
| ATGCTACTATATTTCTTCAA+TGG | 0.361525 | 1:-16339194 | MsG0180001127.01.T01:CDS |
| ATGCGCAATGGCTTCTTTCT+CGG | 0.367067 | 1:+16340756 | None:intergenic |
| TCACTTGTGATTGAGACTAT+TGG | 0.368196 | 1:+16339621 | None:intergenic |
| TGCTACTATATTTCTTCAAT+GGG | 0.390336 | 1:-16339193 | MsG0180001127.01.T01:CDS |
| ACTCACTGTCTCTGCATAAT+GGG | 0.392759 | 1:+16339448 | None:intergenic |
| GAGTGAAGAACTCCATGTTT+CGG | 0.398367 | 1:-16340458 | MsG0180001127.01.T01:CDS |
| GCAATCTGAACTATGCTTCA+TGG | 0.399375 | 1:+16340573 | None:intergenic |
| TTCTAACAGTCCCTCCCATT+TGG | 0.406027 | 1:+16339541 | None:intergenic |
| TAAGAAGCTTGATTTCATCT+AGG | 0.411237 | 1:+16340164 | None:intergenic |
| CATCCTCGCATTTCACTCAA+TGG | 0.419013 | 1:-16339137 | MsG0180001127.01.T01:CDS |
| TTTCAACATATCTTTGACAT+TGG | 0.427382 | 1:-16339684 | MsG0180001127.01.T01:CDS |
| TGCCTTCAGGATTTCCAAAT+GGG | 0.428692 | 1:-16339555 | MsG0180001127.01.T01:CDS |
| GTTCAGCAGGTTCTTGTAGT+GGG | 0.431132 | 1:-16340699 | MsG0180001127.01.T01:CDS |
| ATCCTGAAGGCAAATTGAAC+AGG | 0.433788 | 1:+16339566 | None:intergenic |
| GGATGTGACAGAGGCTTACT+AGG | 0.444182 | 1:-16339663 | MsG0180001127.01.T01:CDS |
| GGCTTCTTTCTCGGCACTGA+GGG | 0.450284 | 1:+16340765 | None:intergenic |
| GGTGGTCTCTTGTTCATTGG+AGG | 0.455783 | 1:-16339104 | MsG0180001127.01.T01:CDS |
| TGAACAAGAGACCACCCTCC+TGG | 0.466679 | 1:+16339111 | None:intergenic |
| TTGCCTTCAGGATTTCCAAA+TGG | 0.467728 | 1:-16339556 | MsG0180001127.01.T01:CDS |
| CTACAAGAACCTGCTGAACC+TGG | 0.473048 | 1:+16340703 | None:intergenic |
| ATCCTCGCATTTCACTCAAT+GGG | 0.493681 | 1:-16339136 | MsG0180001127.01.T01:CDS |
| AAAAGCAGTCCAGGTTCAGC+AGG | 0.497375 | 1:-16340712 | MsG0180001127.01.T01:CDS |
| CATTTCACTCAATGGGATCC+AGG | 0.504780 | 1:-16339129 | MsG0180001127.01.T01:CDS |
| GGTTCAGCAGGTTCTTGTAG+TGG | 0.505056 | 1:-16340700 | MsG0180001127.01.T01:CDS |
| AGTATGTGGCGTTTATCTCC+CGG | 0.506715 | 1:+16340121 | None:intergenic |
| AATGACGACCTCTTAAAATA+CGG | 0.507144 | 1:-16340403 | MsG0180001127.01.T01:CDS |
| CTGTGGCAGCCTCCGAAACA+TGG | 0.508817 | 1:+16340446 | None:intergenic |
| CCATTGCTTTCAATCCCATT+CGG | 0.516665 | 1:+16340502 | None:intergenic |
| ACCTACCTTGCATTGACAAG+TGG | 0.517649 | 1:-16339491 | MsG0180001127.01.T01:CDS |
| GTTTCGGAGGCTGCCACAGA+TGG | 0.520123 | 1:-16340442 | MsG0180001127.01.T01:CDS |
| GGAGTTCTTCACTCAAATAT+CGG | 0.520249 | 1:+16340467 | None:intergenic |
| ATCTGTTTCAACAACTTCGA+TGG | 0.530198 | 1:+16340528 | None:intergenic |
| GAGGTGGAAGAGACTGATGC+AGG | 0.534361 | 1:-16339024 | MsG0180001127.01.T01:CDS |
| TTGAAACAGATCTACCGAAT+GGG | 0.535513 | 1:-16340516 | MsG0180001127.01.T01:CDS |
| CTAGGCTACCTCTAGAACAA+TGG | 0.538104 | 1:-16339239 | MsG0180001127.01.T01:CDS |
| TCGGTTCAGCTACCTTCAGT+AGG | 0.540246 | 1:-16340246 | MsG0180001127.01.T01:CDS |
| TTCAGCATCCATTGTTCTAG+AGG | 0.546205 | 1:+16339231 | None:intergenic |
| GATTGTGCTGAACACGGTCA+TGG | 0.546919 | 1:-16340296 | MsG0180001127.01.T01:CDS |
| CTTCAGGATTTCCAAATGGG+AGG | 0.552733 | 1:-16339552 | MsG0180001127.01.T01:CDS |
| GTGCATGGAAAGAATAGGAC+TGG | 0.553009 | 1:-16340343 | MsG0180001127.01.T01:CDS |
| GTATTATTGTGAAAGACTCT+AGG | 0.560834 | 1:-16339257 | MsG0180001127.01.T01:CDS |
| GTATGTGGCGTTTATCTCCC+GGG | 0.564712 | 1:+16340122 | None:intergenic |
| TTCAGGATTTCCAAATGGGA+GGG | 0.565427 | 1:-16339551 | MsG0180001127.01.T01:CDS |
| TTCAGCAGGTTCTTGTAGTG+GGG | 0.568017 | 1:-16340698 | MsG0180001127.01.T01:CDS |
| AACTTCACAATTATGCGCAA+TGG | 0.571571 | 1:+16340744 | None:intergenic |
| GTACAAGTCTCCCACTCACT+AGG | 0.571667 | 1:+16339781 | None:intergenic |
| AGTCATAAAGACGCAGTATG+TGG | 0.573921 | 1:+16340107 | None:intergenic |
| GACAAGTGGCTCATCAAGCA+TGG | 0.579677 | 1:-16339477 | MsG0180001127.01.T01:CDS |
| GAATTGTGCATGGAAAGAAT+AGG | 0.580039 | 1:-16340348 | MsG0180001127.01.T01:CDS |
| TTGGAGGAGTAAACATGCAT+GGG | 0.580232 | 1:-16339088 | MsG0180001127.01.T01:CDS |
| TTCAGTAGGGATGCTCTCGA+TGG | 0.583985 | 1:-16340232 | MsG0180001127.01.T01:CDS |
| ATTGGAGGAGTAAACATGCA+TGG | 0.584144 | 1:-16339089 | MsG0180001127.01.T01:CDS |
| CGGTTCAGCTACCTTCAGTA+GGG | 0.590898 | 1:-16340245 | MsG0180001127.01.T01:CDS |
| GTTCAAAGTCAGATGGGTGC+AGG | 0.598923 | 1:-16339726 | MsG0180001127.01.T01:CDS |
| AAAAGCAAGCACTTAATGGA+TGG | 0.599900 | 1:-16339320 | MsG0180001127.01.T01:CDS |
| GAATGCTGTTCAAAGTCAGA+TGG | 0.601226 | 1:-16339733 | MsG0180001127.01.T01:CDS |
| GGGATTGAAAGCAATGGAGT+AGG | 0.601533 | 1:-16340496 | MsG0180001127.01.T01:CDS |
| TTATTACTAGCCTAGTGAGT+GGG | 0.602053 | 1:-16339791 | MsG0180001127.01.T01:CDS |
| ATGAGCCACTTGTCAATGCA+AGG | 0.605600 | 1:+16339486 | None:intergenic |
| CTCCCATTTGGAAATCCTGA+AGG | 0.605954 | 1:+16339553 | None:intergenic |
| GTTGAAACAGATCTACCGAA+TGG | 0.607989 | 1:-16340517 | MsG0180001127.01.T01:CDS |
| CCGAATGGGATTGAAAGCAA+TGG | 0.608264 | 1:-16340502 | MsG0180001127.01.T01:CDS |
| TTTGACATTGGATGTGACAG+AGG | 0.609823 | 1:-16339672 | MsG0180001127.01.T01:CDS |
| TTTGAGCTAAGAATTGTGCA+TGG | 0.611242 | 1:-16340358 | MsG0180001127.01.T01:CDS |
| GACTGGATTTGAAGAAAACA+AGG | 0.612197 | 1:-16340326 | MsG0180001127.01.T01:CDS |
| TGGCTTCTTTCTCGGCACTG+AGG | 0.612609 | 1:+16340764 | None:intergenic |
| ATCGAGAGCATCCCTACTGA+AGG | 0.612994 | 1:+16340234 | None:intergenic |
| CTCAATGGGATCCAGGAGGG+TGG | 0.615498 | 1:-16339122 | MsG0180001127.01.T01:CDS |
| CTCGAGGTCGAGTTCTTCAG+AGG | 0.615630 | 1:-16339043 | MsG0180001127.01.T01:CDS |
| GCATAGTTCAGATTGCTACA+AGG | 0.615746 | 1:-16340566 | MsG0180001127.01.T01:CDS |
| TCACTCAATGGGATCCAGGA+GGG | 0.616384 | 1:-16339125 | MsG0180001127.01.T01:CDS |
| TACTATGTGACAGATTATCT+CGG | 0.618368 | 1:-16340265 | MsG0180001127.01.T01:CDS |
| ATTATTATCCTCTCCATCTG+TGG | 0.619270 | 1:+16340429 | None:intergenic |
| TGAACACGGTCATGGCTGAA+AGG | 0.620232 | 1:-16340288 | MsG0180001127.01.T01:CDS |
| TTTATCAAAATGAGAACTCG+AGG | 0.621879 | 1:-16339059 | MsG0180001127.01.T01:CDS |
| GTGGAAGAGACTGATGCAGG+AGG | 0.622444 | 1:-16339021 | MsG0180001127.01.T01:CDS |
| TCTAGAACAATGGATGCTGA+AGG | 0.627964 | 1:-16339229 | MsG0180001127.01.T01:CDS |
| CTTGTCGATAAGCACGACCC+GGG | 0.628203 | 1:-16340139 | MsG0180001127.01.T01:CDS |
| TGGAAGAGACTGATGCAGGA+GGG | 0.637702 | 1:-16339020 | MsG0180001127.01.T01:CDS |
| ACTTTGAACAGCATTCAACA+TGG | 0.643300 | 1:+16339740 | None:intergenic |
| GGAGGCTGCCACAGATGGAG+AGG | 0.645603 | 1:-16340437 | MsG0180001127.01.T01:CDS |
| TGAAGAACTCCATGTTTCGG+AGG | 0.649673 | 1:-16340455 | MsG0180001127.01.T01:CDS |
| GAGGTCGAGTTCTTCAGAGG+TGG | 0.650920 | 1:-16339040 | MsG0180001127.01.T01:CDS |
| ATTATTACTAGCCTAGTGAG+TGG | 0.653310 | 1:-16339792 | MsG0180001127.01.T01:CDS |
| AATGCTGTTCAAAGTCAGAT+GGG | 0.656650 | 1:-16339732 | MsG0180001127.01.T01:CDS |
| ACTTGTCGATAAGCACGACC+CGG | 0.656700 | 1:-16340140 | MsG0180001127.01.T01:CDS |
| GCTTCTTTCTCGGCACTGAG+GGG | 0.663612 | 1:+16340766 | None:intergenic |
| AATGGATGGCAACGACACAA+AGG | 0.678650 | 1:-16339306 | MsG0180001127.01.T01:CDS |
| TTAAACGTATGATGATAATG+GGG | 0.679275 | 1:+16339513 | None:intergenic |
| AGACTTGTACGTGAAAGAGT+TGG | 0.691935 | 1:-16339768 | MsG0180001127.01.T01:CDS |
| GCCACTTGTCAATGCAAGGT+AGG | 0.694066 | 1:+16339490 | None:intergenic |
| TTCACTCAATGGGATCCAGG+AGG | 0.704558 | 1:-16339126 | MsG0180001127.01.T01:CDS |
| AGTGCTGATTGTGCTGAACA+CGG | 0.717577 | 1:-16340302 | MsG0180001127.01.T01:CDS |
| ATCCCATTGAGTGAAATGCG+AGG | 0.759058 | 1:+16339134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGCAATATTTACATAACT+TGG | - | Chr1:16339855-16339874 | MsG0180001127.01.T01:intron | 20.0% |
| !! | GAAGATTATTAAAAATGACA+AGG | - | Chr1:16339589-16339608 | MsG0180001127.01.T01:CDS | 20.0% |
| !! | GCTTAATTTCCTTTAAATTA+AGG | + | Chr1:16339139-16339158 | None:intergenic | 20.0% |
| !! | TTGCAATATTTACATAACTT+GGG | - | Chr1:16339856-16339875 | MsG0180001127.01.T01:intron | 20.0% |
| !!! | AAGATTAATGTTTTTTGCAA+TGG | - | Chr1:16340384-16340403 | MsG0180001127.01.T01:CDS | 20.0% |
| ! | ATGCTACTATATTTCTTCAA+TGG | - | Chr1:16340598-16340617 | MsG0180001127.01.T01:CDS | 25.0% |
| ! | CATAAATTCAACCAAGAATA+TGG | - | Chr1:16339772-16339791 | MsG0180001127.01.T01:CDS | 25.0% |
| ! | CATTAGCTACCTTAATTTAA+AGG | - | Chr1:16339127-16339146 | MsG0180001127.01.T01:CDS | 25.0% |
| ! | GTTAAACGTATGATGATAAT+GGG | + | Chr1:16340283-16340302 | None:intergenic | 25.0% |
| ! | TGCTACTATATTTCTTCAAT+GGG | - | Chr1:16340599-16340618 | MsG0180001127.01.T01:CDS | 25.0% |
| ! | TTAAGGTAGCTAATGTTTAT+AGG | + | Chr1:16339122-16339141 | None:intergenic | 25.0% |
| ! | TTGTATGTTCTATTGATCTT+TGG | - | Chr1:16339932-16339951 | MsG0180001127.01.T01:intron | 25.0% |
| ! | TTTCAACATATCTTTGACAT+TGG | - | Chr1:16340108-16340127 | MsG0180001127.01.T01:intron | 25.0% |
| !! | CTGAATGATTTTCATATGAA+GGG | - | Chr1:16339164-16339183 | MsG0180001127.01.T01:CDS | 25.0% |
| !! | TCTGAATGATTTTCATATGA+AGG | - | Chr1:16339163-16339182 | MsG0180001127.01.T01:CDS | 25.0% |
| !! | TGTTTTCCAATCTCTTAATT+TGG | + | Chr1:16340514-16340533 | None:intergenic | 25.0% |
| !! | TTAAACGTATGATGATAATG+GGG | + | Chr1:16340282-16340301 | None:intergenic | 25.0% |
| AAATTCAACCAAGAATATGG+TGG | - | Chr1:16339775-16339794 | MsG0180001127.01.T01:CDS | 30.0% | |
| AAGGTTCCAAATTAAGAGAT+TGG | - | Chr1:16340505-16340524 | MsG0180001127.01.T01:CDS | 30.0% | |
| AATGACGACCTCTTAAAATA+CGG | - | Chr1:16339389-16339408 | MsG0180001127.01.T01:intron | 30.0% | |
| ACAATGAATAATGTTCCTGA+TGG | + | Chr1:16339718-16339737 | None:intergenic | 30.0% | |
| ATAGAGAAGACAGAATTATG+AGG | + | Chr1:16339904-16339923 | None:intergenic | 30.0% | |
| GGTTAAACGTATGATGATAA+TGG | + | Chr1:16340284-16340303 | None:intergenic | 30.0% | |
| GTATTATTGTGAAAGACTCT+AGG | - | Chr1:16340535-16340554 | MsG0180001127.01.T01:CDS | 30.0% | |
| TAAGAAGCTTGATTTCATCT+AGG | + | Chr1:16339631-16339650 | None:intergenic | 30.0% | |
| TACTATGTGACAGATTATCT+CGG | - | Chr1:16339527-16339546 | MsG0180001127.01.T01:CDS | 30.0% | |
| TTTATCAAAATGAGAACTCG+AGG | - | Chr1:16340733-16340752 | MsG0180001127.01.T01:CDS | 30.0% | |
| !! | CATTCGAATAATTCTGGAAT+AGG | - | Chr1:16339955-16339974 | MsG0180001127.01.T01:intron | 30.0% |
| !! | TTATGACTATTTCTACCATC+AGG | - | Chr1:16339700-16339719 | MsG0180001127.01.T01:CDS | 30.0% |
| AAAAGCAAGCACTTAATGGA+TGG | - | Chr1:16340472-16340491 | MsG0180001127.01.T01:CDS | 35.0% | |
| AACTTCACAATTATGCGCAA+TGG | + | Chr1:16339051-16339070 | None:intergenic | 35.0% | |
| AATGCTGTTCAAAGTCAGAT+GGG | - | Chr1:16340060-16340079 | MsG0180001127.01.T01:intron | 35.0% | |
| ACAGAAAAGCAAGCACTTAA+TGG | - | Chr1:16340468-16340487 | MsG0180001127.01.T01:CDS | 35.0% | |
| ACTTTGAACAGCATTCAACA+TGG | + | Chr1:16340055-16340074 | None:intergenic | 35.0% | |
| ATCTGTTTCAACAACTTCGA+TGG | + | Chr1:16339267-16339286 | None:intergenic | 35.0% | |
| ATTATTATCCTCTCCATCTG+TGG | + | Chr1:16339366-16339385 | None:intergenic | 35.0% | |
| CACTTGTGATTGAGACTATT+GGG | + | Chr1:16340173-16340192 | None:intergenic | 35.0% | |
| CTTTGGCATTCGAATAATTC+TGG | - | Chr1:16339949-16339968 | MsG0180001127.01.T01:intron | 35.0% | |
| GAATTGTGCATGGAAAGAAT+AGG | - | Chr1:16339444-16339463 | MsG0180001127.01.T01:intron | 35.0% | |
| GACTGGATTTGAAGAAAACA+AGG | - | Chr1:16339466-16339485 | MsG0180001127.01.T01:CDS | 35.0% | |
| GGAGTTCTTCACTCAAATAT+CGG | + | Chr1:16339328-16339347 | None:intergenic | 35.0% | |
| TCACTTGTGATTGAGACTAT+TGG | + | Chr1:16340174-16340193 | None:intergenic | 35.0% | |
| TTGAAACAGATCTACCGAAT+GGG | - | Chr1:16339276-16339295 | MsG0180001127.01.T01:CDS | 35.0% | |
| TTTGAGCTAAGAATTGTGCA+TGG | - | Chr1:16339434-16339453 | MsG0180001127.01.T01:intron | 35.0% | |
| ! | ATTATTACTAGCCTAGTGAG+TGG | - | Chr1:16340000-16340019 | MsG0180001127.01.T01:intron | 35.0% |
| ! | TTATTACTAGCCTAGTGAGT+GGG | - | Chr1:16340001-16340020 | MsG0180001127.01.T01:intron | 35.0% |
| !! | CATCTTGACCGTATTTTAAG+AGG | + | Chr1:16339400-16339419 | None:intergenic | 35.0% |
| !! | GACAACAATTTTGATGCTTG+TGG | - | Chr1:16340192-16340211 | MsG0180001127.01.T01:CDS | 35.0% |
| ACTCACTGTCTCTGCATAAT+GGG | + | Chr1:16340347-16340366 | None:intergenic | 40.0% | |
| ACTTGCACACAACTAAGTGT+AGG | + | Chr1:16340434-16340453 | None:intergenic | 40.0% | |
| AGACAGAATTATGAGGCTTC+AGG | + | Chr1:16339897-16339916 | None:intergenic | 40.0% | |
| AGACTTGTACGTGAAAGAGT+TGG | - | Chr1:16340024-16340043 | MsG0180001127.01.T01:intron | 40.0% | |
| AGTCATAAAGACGCAGTATG+TGG | + | Chr1:16339688-16339707 | None:intergenic | 40.0% | |
| ATCCTCGCATTTCACTCAAT+GGG | - | Chr1:16340656-16340675 | MsG0180001127.01.T01:CDS | 40.0% | |
| ATCCTGAAGGCAAATTGAAC+AGG | + | Chr1:16340229-16340248 | None:intergenic | 40.0% | |
| ATGCTTCACCACCATATTCT+TGG | + | Chr1:16339786-16339805 | None:intergenic | 40.0% | |
| ATTGGAGGAGTAAACATGCA+TGG | - | Chr1:16340703-16340722 | MsG0180001127.01.T01:CDS | 40.0% | |
| CATTACTCGACAGTGTTTAG+AGG | - | Chr1:16339831-16339850 | MsG0180001127.01.T01:intron | 40.0% | |
| CCATTGCTTTCAATCCCATT+CGG | + | Chr1:16339293-16339312 | None:intergenic | 40.0% | |
| GAATGCTGTTCAAAGTCAGA+TGG | - | Chr1:16340059-16340078 | MsG0180001127.01.T01:intron | 40.0% | |
| GAGTGAAGAACTCCATGTTT+CGG | - | Chr1:16339334-16339353 | MsG0180001127.01.T01:intron | 40.0% | |
| GCAATCTGAACTATGCTTCA+TGG | + | Chr1:16339222-16339241 | None:intergenic | 40.0% | |
| GCATAGTTCAGATTGCTACA+AGG | - | Chr1:16339226-16339245 | MsG0180001127.01.T01:CDS | 40.0% | |
| GTTGAAACAGATCTACCGAA+TGG | - | Chr1:16339275-16339294 | MsG0180001127.01.T01:CDS | 40.0% | |
| TAAGTTTGCACGCAGAAGTT+CGG | + | Chr1:16339743-16339762 | None:intergenic | 40.0% | |
| TACTCACTGTCTCTGCATAA+TGG | + | Chr1:16340348-16340367 | None:intergenic | 40.0% | |
| TGCCTTCAGGATTTCCAAAT+GGG | - | Chr1:16340237-16340256 | MsG0180001127.01.T01:CDS | 40.0% | |
| TTCAGCATCCATTGTTCTAG+AGG | + | Chr1:16340564-16340583 | None:intergenic | 40.0% | |
| TTCAGGATTTCCAAATGGGA+GGG | - | Chr1:16340241-16340260 | MsG0180001127.01.T01:CDS | 40.0% | |
| TTCCTGTTCAATTTGCCTTC+AGG | - | Chr1:16340224-16340243 | MsG0180001127.01.T01:CDS | 40.0% | |
| TTGCCTTCAGGATTTCCAAA+TGG | - | Chr1:16340236-16340255 | MsG0180001127.01.T01:CDS | 40.0% | |
| TTGGAGGAGTAAACATGCAT+GGG | - | Chr1:16340704-16340723 | MsG0180001127.01.T01:CDS | 40.0% | |
| TTTGACATTGGATGTGACAG+AGG | - | Chr1:16340120-16340139 | MsG0180001127.01.T01:CDS | 40.0% | |
| ! | TCTAGAACAATGGATGCTGA+AGG | - | Chr1:16340563-16340582 | MsG0180001127.01.T01:CDS | 40.0% |
| ! | TGTGCAAGTGTGGTTTTTGT+GGG | - | Chr1:16340445-16340464 | MsG0180001127.01.T01:CDS | 40.0% |
| AATGGATGGCAACGACACAA+AGG | - | Chr1:16340486-16340505 | MsG0180001127.01.T01:CDS | 45.0% | |
| AGTATGTGGCGTTTATCTCC+CGG | + | Chr1:16339674-16339693 | None:intergenic | 45.0% | |
| ATCCCATTGAGTGAAATGCG+AGG | + | Chr1:16340661-16340680 | None:intergenic | 45.0% | |
| ATGAGCCACTTGTCAATGCA+AGG | + | Chr1:16340309-16340328 | None:intergenic | 45.0% | |
| ATGCGCAATGGCTTCTTTCT+CGG | + | Chr1:16339039-16339058 | None:intergenic | 45.0% | |
| CACACAACTAAGTGTAGGCT+TGG | + | Chr1:16340429-16340448 | None:intergenic | 45.0% | |
| CACTTAGTTGTGTGCAAGTG+TGG | - | Chr1:16340435-16340454 | MsG0180001127.01.T01:CDS | 45.0% | |
| CATCCTCGCATTTCACTCAA+TGG | - | Chr1:16340655-16340674 | MsG0180001127.01.T01:CDS | 45.0% | |
| CATTTCACTCAATGGGATCC+AGG | - | Chr1:16340663-16340682 | MsG0180001127.01.T01:CDS | 45.0% | |
| CCGAATGGGATTGAAAGCAA+TGG | - | Chr1:16339290-16339309 | MsG0180001127.01.T01:CDS | 45.0% | |
| CTCCCATTTGGAAATCCTGA+AGG | + | Chr1:16340242-16340261 | None:intergenic | 45.0% | |
| CTTCAGGATTTCCAAATGGG+AGG | - | Chr1:16340240-16340259 | MsG0180001127.01.T01:CDS | 45.0% | |
| GGGATTGAAAGCAATGGAGT+AGG | - | Chr1:16339296-16339315 | MsG0180001127.01.T01:CDS | 45.0% | |
| GTGCATGGAAAGAATAGGAC+TGG | - | Chr1:16339449-16339468 | MsG0180001127.01.T01:intron | 45.0% | |
| GTTCAGCAGGTTCTTGTAGT+GGG | - | Chr1:16339093-16339112 | MsG0180001127.01.T01:CDS | 45.0% | |
| TGAAGAACTCCATGTTTCGG+AGG | - | Chr1:16339337-16339356 | MsG0180001127.01.T01:intron | 45.0% | |
| TTCAGCAGGTTCTTGTAGTG+GGG | - | Chr1:16339094-16339113 | MsG0180001127.01.T01:CDS | 45.0% | |
| TTCTAACAGTCCCTCCCATT+TGG | + | Chr1:16340254-16340273 | None:intergenic | 45.0% | |
| ! | ACCTACCTTGCATTGACAAG+TGG | - | Chr1:16340301-16340320 | MsG0180001127.01.T01:CDS | 45.0% |
| ! | CCATTTTGCAAAAGCAGTCC+AGG | - | Chr1:16339071-16339090 | MsG0180001127.01.T01:CDS | 45.0% |
| ! | GTGTGCAAGTGTGGTTTTTG+TGG | - | Chr1:16340444-16340463 | MsG0180001127.01.T01:CDS | 45.0% |
| !! | AGTGCTGATTGTGCTGAACA+CGG | - | Chr1:16339490-16339509 | MsG0180001127.01.T01:CDS | 45.0% |
| !! | CCTGGACTGCTTTTGCAAAA+TGG | + | Chr1:16339074-16339093 | None:intergenic | 45.0% |
| !! | CTAGGCTACCTCTAGAACAA+TGG | - | Chr1:16340553-16340572 | MsG0180001127.01.T01:CDS | 45.0% |
| AAAAGCAGTCCAGGTTCAGC+AGG | - | Chr1:16339080-16339099 | MsG0180001127.01.T01:CDS | 50.0% | |
| ACTTGTCGATAAGCACGACC+CGG | - | Chr1:16339652-16339671 | MsG0180001127.01.T01:CDS | 50.0% | |
| CGGTTCAGCTACCTTCAGTA+GGG | - | Chr1:16339547-16339566 | MsG0180001127.01.T01:CDS | 50.0% | |
| CTACAAGAACCTGCTGAACC+TGG | + | Chr1:16339092-16339111 | None:intergenic | 50.0% | |
| GACAAGTGGCTCATCAAGCA+TGG | - | Chr1:16340315-16340334 | MsG0180001127.01.T01:CDS | 50.0% | |
| GAGGGTGGTCTCTTGTTCAT+TGG | - | Chr1:16340685-16340704 | MsG0180001127.01.T01:CDS | 50.0% | |
| GATTGTGCTGAACACGGTCA+TGG | - | Chr1:16339496-16339515 | MsG0180001127.01.T01:CDS | 50.0% | |
| GCCACTTGTCAATGCAAGGT+AGG | + | Chr1:16340305-16340324 | None:intergenic | 50.0% | |
| GGATGTGACAGAGGCTTACT+AGG | - | Chr1:16340129-16340148 | MsG0180001127.01.T01:CDS | 50.0% | |
| GGTGGTCTCTTGTTCATTGG+AGG | - | Chr1:16340688-16340707 | MsG0180001127.01.T01:CDS | 50.0% | |
| GGTTCAGCAGGTTCTTGTAG+TGG | - | Chr1:16339092-16339111 | MsG0180001127.01.T01:CDS | 50.0% | |
| GTACAAGTCTCCCACTCACT+AGG | + | Chr1:16340014-16340033 | None:intergenic | 50.0% | |
| GTATGTGGCGTTTATCTCCC+GGG | + | Chr1:16339673-16339692 | None:intergenic | 50.0% | |
| GTTCAAAGTCAGATGGGTGC+AGG | - | Chr1:16340066-16340085 | MsG0180001127.01.T01:intron | 50.0% | |
| TCACTCAATGGGATCCAGGA+GGG | - | Chr1:16340667-16340686 | MsG0180001127.01.T01:CDS | 50.0% | |
| TCGGTTCAGCTACCTTCAGT+AGG | - | Chr1:16339546-16339565 | MsG0180001127.01.T01:CDS | 50.0% | |
| TGAACACGGTCATGGCTGAA+AGG | - | Chr1:16339504-16339523 | MsG0180001127.01.T01:CDS | 50.0% | |
| TGGAAGAGACTGATGCAGGA+GGG | - | Chr1:16340772-16340791 | MsG0180001127.01.T01:CDS | 50.0% | |
| TTCACTCAATGGGATCCAGG+AGG | - | Chr1:16340666-16340685 | MsG0180001127.01.T01:CDS | 50.0% | |
| TTCAGTAGGGATGCTCTCGA+TGG | - | Chr1:16339560-16339579 | MsG0180001127.01.T01:CDS | 50.0% | |
| !! | ATCGAGAGCATCCCTACTGA+AGG | + | Chr1:16339561-16339580 | None:intergenic | 50.0% |
| CTCGAGGTCGAGTTCTTCAG+AGG | - | Chr1:16340749-16340768 | MsG0180001127.01.T01:CDS | 55.0% | |
| CTTGTCGATAAGCACGACCC+GGG | - | Chr1:16339653-16339672 | MsG0180001127.01.T01:CDS | 55.0% | |
| GAGGTCGAGTTCTTCAGAGG+TGG | - | Chr1:16340752-16340771 | MsG0180001127.01.T01:CDS | 55.0% | |
| GAGGTGGAAGAGACTGATGC+AGG | - | Chr1:16340768-16340787 | MsG0180001127.01.T01:CDS | 55.0% | |
| GTGGAAGAGACTGATGCAGG+AGG | - | Chr1:16340771-16340790 | MsG0180001127.01.T01:CDS | 55.0% | |
| TGAACAAGAGACCACCCTCC+TGG | + | Chr1:16340684-16340703 | None:intergenic | 55.0% | |
| TGGCTTCTTTCTCGGCACTG+AGG | + | Chr1:16339031-16339050 | None:intergenic | 55.0% | |
| ! | GCTTCTTTCTCGGCACTGAG+GGG | + | Chr1:16339029-16339048 | None:intergenic | 55.0% |
| ! | GGCTTCTTTCTCGGCACTGA+GGG | + | Chr1:16339030-16339049 | None:intergenic | 55.0% |
| CTCAATGGGATCCAGGAGGG+TGG | - | Chr1:16340670-16340689 | MsG0180001127.01.T01:CDS | 60.0% | |
| CTGTGGCAGCCTCCGAAACA+TGG | + | Chr1:16339349-16339368 | None:intergenic | 60.0% | |
| GTTTCGGAGGCTGCCACAGA+TGG | - | Chr1:16339350-16339369 | MsG0180001127.01.T01:intron | 60.0% | |
| GGAGGCTGCCACAGATGGAG+AGG | - | Chr1:16339355-16339374 | MsG0180001127.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 16339011 | 16340803 | 16339011 | ID=MsG0180001127.01;Name=MsG0180001127.01 |
| Chr1 | mRNA | 16339011 | 16340803 | 16339011 | ID=MsG0180001127.01.T01;Parent=MsG0180001127.01;Name=MsG0180001127.01.T01;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.66|1|0.66|3|0|466 |
| Chr1 | exon | 16340119 | 16340803 | 16340119 | ID=MsG0180001127.01.T01:exon:31323;Parent=MsG0180001127.01.T01 |
| Chr1 | exon | 16339454 | 16339837 | 16339454 | ID=MsG0180001127.01.T01:exon:31322;Parent=MsG0180001127.01.T01 |
| Chr1 | exon | 16339011 | 16339342 | 16339011 | ID=MsG0180001127.01.T01:exon:31321;Parent=MsG0180001127.01.T01 |
| Chr1 | CDS | 16340119 | 16340803 | 16340119 | ID=MsG0180001127.01.T01:cds;Parent=MsG0180001127.01.T01 |
| Chr1 | CDS | 16339454 | 16339837 | 16339454 | ID=MsG0180001127.01.T01:cds;Parent=MsG0180001127.01.T01 |
| Chr1 | CDS | 16339011 | 16339342 | 16339011 | ID=MsG0180001127.01.T01:cds;Parent=MsG0180001127.01.T01 |
| Gene Sequence |
| Protein sequence |
