AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001189.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001189.01.T01 MTR_1g032630 89.460 1129 104 2 1 1129 1 1114 0.0 2082
MsG0180001189.01.T01 MTR_1g032610 82.804 1134 173 4 1 1129 1 1117 0.0 1902
MsG0180001189.01.T01 MTR_1g032720 82.405 1131 183 2 1 1129 610 1726 0.0 1900
MsG0180001189.01.T01 MTR_1g032720 74.765 638 138 3 1 629 1 624 0.0 962
MsG0180001189.01.T01 MTR_1g032610 84.106 1057 160 3 78 1129 1 1054 0.0 1814
MsG0180001189.01.T01 MTR_1g032630 88.682 804 76 2 1 804 1 789 0.0 1459
MsG0180001189.01.T01 MTR_1g032590 54.016 1133 471 10 5 1115 3 1107 0.0 1219
MsG0180001189.01.T01 MTR_1g032710 91.516 554 47 0 576 1129 1 554 0.0 1026
MsG0180001189.01.T01 MTR_4g106660 37.997 1158 623 22 3 1110 7 1119 0.0 751
MsG0180001189.01.T01 MTR_4g106660 38.042 1154 620 22 3 1106 7 1115 0.0 751
MsG0180001189.01.T01 MTR_4g106660 48.544 103 53 0 846 948 1110 1212 9.82e-21 99.4
MsG0180001189.01.T01 MTR_3g107390 36.884 1136 612 28 65 1120 81 1191 0.0 633
MsG0180001189.01.T01 MTR_6g088660 21.922 666 370 29 507 1077 317 927 2.99e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001189.01.T01 AT1G14790 60.461 1128 418 10 5 1128 3 1106 0.0 1366
MsG0180001189.01.T01 AT4G11130 37.704 1167 634 25 6 1126 11 1130 0.0 733
MsG0180001189.01.T01 AT3G49500 36.608 1079 570 32 108 1106 126 1170 9.51e-179 556
MsG0180001189.01.T01 AT3G49500 36.608 1079 570 32 108 1106 126 1170 9.51e-179 556
MsG0180001189.01.T01 AT3G49500 36.608 1079 570 32 108 1106 126 1170 9.51e-179 556
MsG0180001189.01.T01 AT3G49500 36.608 1079 570 32 108 1106 126 1170 9.51e-179 556
MsG0180001189.01.T01 AT3G49500 36.608 1079 570 32 108 1106 126 1170 9.51e-179 556
MsG0180001189.01.T01 AT2G19930 24.742 679 385 28 375 960 195 840 5.14e-25 113
MsG0180001189.01.T01 AT2G19930 24.742 679 385 28 375 960 201 846 5.83e-25 113
MsG0180001189.01.T01 AT2G19930 24.340 682 390 26 375 960 195 846 2.74e-24 110
MsG0180001189.01.T01 AT2G19910 25.957 601 332 24 446 954 265 844 4.22e-22 103
MsG0180001189.01.T01 AT2G19920 25.462 703 365 34 349 948 201 847 3.91e-21 100
MsG0180001189.01.T01 AT2G19920 25.462 703 365 34 349 948 188 834 3.93e-21 100
MsG0180001189.01.T01 AT2G19920 25.462 703 365 34 349 948 187 833 4.03e-21 100
MsG0180001189.01.T01 AT2G19920 26.025 634 336 30 410 948 238 833 1.24e-20 99.0
MsG0180001189.01.T01 AT2G19910 25.738 610 331 25 446 954 265 853 1.52e-20 98.6

Find 259 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTACATTCTTTGATTTAT+AGG 0.118908 1:-17000869 None:intergenic
CAATGATGCTGCAGACATTT+AGG 0.140329 1:+16999052 MsG0180001189.01.T01:CDS
GTTCAGCACGGCTGTCTTTC+AGG 0.142842 1:+16997866 MsG0180001189.01.T01:CDS
GACGATGTTAAACTGTATTT+TGG 0.159141 1:+16996441 MsG0180001189.01.T01:CDS
ACTTTGCATGTAGATATTTA+TGG 0.175367 1:+17001481 MsG0180001189.01.T01:three_prime_UTR
CTCTTCTGTTTGTAGTTAAT+TGG 0.176066 1:+16997500 MsG0180001189.01.T01:intron
AGCTTTCATATGAGAATATT+TGG 0.191630 1:+16996589 MsG0180001189.01.T01:CDS
ATGGATGCTAGTGTAGATTT+TGG 0.197478 1:+16996507 MsG0180001189.01.T01:CDS
TATGGAATTCGAGGGCTTTA+TGG 0.210906 1:+17000987 MsG0180001189.01.T01:CDS
AGGAAAGATTCTCTGTATTA+TGG 0.218992 1:+16996478 MsG0180001189.01.T01:CDS
TCCCAACTTGTAGTCATAAT+TGG 0.235213 1:-17001040 None:intergenic
CATGAAGTCTGGATATTCTT+TGG 0.237086 1:-17000827 None:intergenic
TGGCTTTCTCCTTCTTGATT+TGG 0.249778 1:-17001377 None:intergenic
GCACGGATCCATTGCTTATC+AGG 0.257148 1:-16997605 None:intergenic
CTATTTAAAAGTTACGAAAA+TGG 0.261211 1:+16996374 MsG0180001189.01.T01:CDS
CGCATCCGCATCCCTTCTTT+TGG 0.261948 1:-17001142 None:intergenic
GAAACTAGAACCTTAGAATA+TGG 0.263426 1:+16999153 MsG0180001189.01.T01:CDS
TGCAAAGTATCTATTGATTC+AGG 0.268018 1:+16996644 MsG0180001189.01.T01:CDS
GCTAGACTTGGGCAATCTTT+TGG 0.280000 1:+16998490 MsG0180001189.01.T01:CDS
TAACATAAAATTGGATGTTC+TGG 0.286207 1:+16998786 MsG0180001189.01.T01:CDS
AATGATGCTGCAGACATTTA+GGG 0.287232 1:+16999053 MsG0180001189.01.T01:CDS
AGAAATACGTGAAGATAAAT+TGG 0.291806 1:-16998248 None:intergenic
GACATTCTTGCTCTCTTTCC+CGG 0.296361 1:+16995948 MsG0180001189.01.T01:five_prime_UTR
ATCTCCCATCCATTCCCTTA+TGG 0.297497 1:-16998434 None:intergenic
AACTAAGGCACATGAGGTTT+TGG 0.300915 1:+16998945 MsG0180001189.01.T01:CDS
ACTTACCATCATAGTTACTA+TGG 0.312137 1:+17001285 MsG0180001189.01.T01:CDS
TATAAATCAAAGAATGTAAT+AGG 0.313545 1:+17000871 MsG0180001189.01.T01:CDS
GAAAGAAATGGCTCAACATT+AGG 0.318451 1:-16999030 None:intergenic
TGATCTTTCAGCCATCTTGC+AGG 0.323580 1:-16998001 None:intergenic
TTCACTCCTTGCAGTTGTAT+TGG 0.325549 1:+16997635 MsG0180001189.01.T01:CDS
TGATTCAGATAACATAAAAT+TGG 0.328974 1:+16998777 MsG0180001189.01.T01:CDS
TCACTCCTTGCAGTTGTATT+GGG 0.332038 1:+16997636 MsG0180001189.01.T01:CDS
GGGACATCTACTTTGTTTGT+TGG 0.336396 1:+16999774 MsG0180001189.01.T01:CDS
ATGGTGTGTTTACCATTTGC+TGG 0.336747 1:+17001353 MsG0180001189.01.T01:CDS
TAGAAGAATGCCGTTGGCTT+TGG 0.337561 1:-16996411 None:intergenic
CAGTCATTCTCGTGTAGTTA+AGG 0.343350 1:+16999212 MsG0180001189.01.T01:CDS
TTCTTCCCAACCTATTGTAT+TGG 0.346101 1:+16999844 MsG0180001189.01.T01:CDS
TTGTTCAATATTCTACCAAT+AGG 0.357403 1:+16999184 MsG0180001189.01.T01:CDS
GGTGGGGCTGATGTAGATTC+TGG 0.358182 1:+17001219 MsG0180001189.01.T01:CDS
GGAAAGATTCTCTGTATTAT+GGG 0.365847 1:+16996479 MsG0180001189.01.T01:CDS
CAATATCTATGCCATTTCTA+AGG 0.372511 1:-16998312 None:intergenic
ACATCCGGATTGCAAGAAAA+AGG 0.372730 1:-16997773 None:intergenic
GGAAAACTTTGTTCATTATG+AGG 0.373843 1:+16997715 MsG0180001189.01.T01:CDS
CGACTATATCTTTGGATAAC+GGG 0.374346 1:+16998065 MsG0180001189.01.T01:CDS
CTTAGAAATGGCATAGATAT+TGG 0.374817 1:+16998313 MsG0180001189.01.T01:CDS
TCGGTCACCGACTATATCTT+TGG 0.382147 1:+16998057 MsG0180001189.01.T01:CDS
TGCCATCTGCGTTTCAGATT+CGG 0.383162 1:+16998674 MsG0180001189.01.T01:CDS
ACTGTCATTGAGTATATAAT+TGG 0.384132 1:-17000650 None:intergenic
TCTTCACGTATTTCTGAGAA+TGG 0.388273 1:+16998256 MsG0180001189.01.T01:CDS
AACTCCTCGCCTCTTTCCTT+AGG 0.391172 1:-17001185 None:intergenic
TGGAACAAAGTTTCAGTTCT+GGG 0.391973 1:+17001421 MsG0180001189.01.T01:CDS
GGACATCTACTTTGTTTGTT+GGG 0.393937 1:+16999775 MsG0180001189.01.T01:CDS
GAAAATTATCAATATGTTGA+TGG 0.394612 1:-16998180 None:intergenic
TCACTTCCGGAACACTCGTT+TGG 0.395235 1:-16999743 None:intergenic
TGGAAAATCAACTGCTATTG+AGG 0.398393 1:-17000764 None:intergenic
ATTCTTTCCATCCTTAGAAA+TGG 0.402135 1:+16998301 MsG0180001189.01.T01:CDS
TCGACAGACCTTGAGGAATC+CGG 0.404706 1:-16995967 None:intergenic
ATGTTTGCTCGTGCAACAAC+CGG 0.406004 1:+16998397 MsG0180001189.01.T01:CDS
GCTAAATATGCTGCTAGACT+TGG 0.420071 1:+16998478 MsG0180001189.01.T01:CDS
TCATTAGTCGTATTATTCAT+TGG 0.421230 1:+17001651 MsG0180001189.01.T01:three_prime_UTR
ATTTAGGGCATCAAAGTTGT+TGG 0.421669 1:+16999068 MsG0180001189.01.T01:CDS
AAACTAGAACCTTAGAATAT+GGG 0.421804 1:+16999154 MsG0180001189.01.T01:CDS
TCCATCAGAGAAGACATATT+CGG 0.427902 1:-16998590 None:intergenic
ACTTTAAACAAGATGTGAAA+TGG 0.429644 1:-16997833 None:intergenic
CTTGTTTAAAGTTAATTCCT+TGG 0.431052 1:+16997844 MsG0180001189.01.T01:CDS
ACCATGGAAAGCTTAGAAAA+TGG 0.431302 1:-17001335 None:intergenic
ACATCATGATCCAATACAAT+AGG 0.434504 1:-16999854 None:intergenic
GGCTCACTGCCGATTCCATA+AGG 0.435797 1:+16998419 MsG0180001189.01.T01:CDS
CAGAGATTAATGTCTCAAAT+CGG 0.436411 1:+16998143 MsG0180001189.01.T01:CDS
TGCAGCATCATTGAAAGAAA+TGG 0.437283 1:-16999042 None:intergenic
TACAAAAGGAAGAGCAATGA+TGG 0.437443 1:+16999119 MsG0180001189.01.T01:CDS
TTAGATACACTTGTTGATGT+AGG 0.439715 1:-16997551 None:intergenic
ACCAATTATGACTACAAGTT+GGG 0.440195 1:+17001039 MsG0180001189.01.T01:CDS
CCGACTATATCTTTGGATAA+CGG 0.440826 1:+16998064 MsG0180001189.01.T01:CDS
CCATGTTTAACCTTCGCGTC+AGG 0.441759 1:-16998562 None:intergenic
AGTTGATCCACTCAGAATAA+AGG 0.443637 1:+16997919 MsG0180001189.01.T01:CDS
CAAAGAATATCCAGACTTCA+TGG 0.444746 1:+17000828 MsG0180001189.01.T01:CDS
CGAAATATTTCACCAAAAGA+AGG 0.444980 1:+17001130 MsG0180001189.01.T01:CDS
ACTAGGATATTTATTACAAA+AGG 0.445405 1:+16999105 MsG0180001189.01.T01:CDS
GTCCCCGTCTAGATCACTTC+CGG 0.446184 1:-16999756 None:intergenic
GGCTCAGACATTGCTTTAGC+AGG 0.447457 1:-17000718 None:intergenic
GGAGTCATATGATTCGGATA+TGG 0.447757 1:+17000969 MsG0180001189.01.T01:CDS
ATGGAACAAAGTTTCAGTTC+TGG 0.452484 1:+17001420 MsG0180001189.01.T01:CDS
TCCACCATGTGGCGCAAAGC+TGG 0.452967 1:-16999306 None:intergenic
AAAAGAGTTGGCATTGAAGA+TGG 0.454789 1:+16996080 MsG0180001189.01.T01:exon
TGTACAATGAAGGTATGAAA+AGG 0.454846 1:+17001310 MsG0180001189.01.T01:CDS
TTGGGATTGGATTGAGAAAG+TGG 0.455481 1:+16996526 MsG0180001189.01.T01:CDS
GGGTATAACTGCTGGGATAC+CGG 0.456638 1:-17000791 None:intergenic
CTCTGTATTATGGGGAAAGA+TGG 0.458753 1:+16996488 MsG0180001189.01.T01:CDS
ACATTTGTAGAGCAGTATAC+TGG 0.461229 1:+16996165 MsG0180001189.01.T01:CDS
GGATGCGGATGCGATTACTA+TGG 0.463056 1:+17001152 MsG0180001189.01.T01:CDS
GGCTAAGGAGTCATATGATT+CGG 0.463518 1:+17000963 MsG0180001189.01.T01:CDS
TCTTGATTTGGACCAGCAAA+TGG 0.465226 1:-17001365 None:intergenic
CATCCATTCCCTTATGGAAT+CGG 0.466701 1:-16998428 None:intergenic
AGTCATTCTCGTGTAGTTAA+GGG 0.468250 1:+16999213 MsG0180001189.01.T01:CDS
AACATCGCCCGGGTGCAAGC+AGG 0.469267 1:-16999259 None:intergenic
TATGTCTTCTCTGATGGAAT+CGG 0.469620 1:+16998595 MsG0180001189.01.T01:CDS
TACTATGGTTTGTACAATGA+AGG 0.470404 1:+17001300 MsG0180001189.01.T01:CDS
TTATGAAGCAAACTCATTTG+TGG 0.470827 1:+17001571 MsG0180001189.01.T01:three_prime_UTR
AACCAATTATGACTACAAGT+TGG 0.472437 1:+17001038 MsG0180001189.01.T01:CDS
ACTCCTCGCCTCTTTCCTTA+GGG 0.475778 1:-17001184 None:intergenic
GCAACCATGGGAACAACATC+CGG 0.476437 1:-16997788 None:intergenic
CCGGAACACTCGTTTGGATG+TGG 0.476825 1:-16999737 None:intergenic
TTCAAAACACGAACATCGCC+CGG 0.477028 1:-16999270 None:intergenic
AAATATCTCTTGAACTTGCC+AGG 0.478082 1:+16998620 MsG0180001189.01.T01:CDS
TCTACAAATGTCTTTACATC+AGG 0.480962 1:-16996153 None:intergenic
CTTCACGTATTTCTGAGAAT+GGG 0.480988 1:+16998257 MsG0180001189.01.T01:CDS
AGAAAAGTTGTACTATTCAA+AGG 0.481118 1:+16997964 MsG0180001189.01.T01:CDS
GGAAATCTGATGGACTACTA+TGG 0.482352 1:+17001060 MsG0180001189.01.T01:CDS
ATCTATGCCATTTCTAAGGA+TGG 0.483375 1:-16998308 None:intergenic
GTGGGGCTGATGTAGATTCT+GGG 0.483416 1:+17001220 MsG0180001189.01.T01:CDS
AGTAAAACAATTAAGTTGCA+TGG 0.485965 1:+16996108 MsG0180001189.01.T01:CDS
TTCGGAAAATCTCTGTTACT+AGG 0.486188 1:-16997686 None:intergenic
TTCATTTGTCGACGAGGAGT+TGG 0.486795 1:+16998210 MsG0180001189.01.T01:CDS
CCGAAACTCTAAGCGTCAAA+AGG 0.488524 1:+16998521 MsG0180001189.01.T01:CDS
ACGGGTTGGTATATGTTCGC+AGG 0.489662 1:+16998083 MsG0180001189.01.T01:CDS
CCACATCCAAACGAGTGTTC+CGG 0.490224 1:+16999737 MsG0180001189.01.T01:CDS
ATGATCCAATACAATAGGTT+GGG 0.494319 1:-16999849 None:intergenic
ACCGAATATGTCTTCTCTGA+TGG 0.497328 1:+16998589 MsG0180001189.01.T01:CDS
CGATTCCATAAGGGAATGGA+TGG 0.497905 1:+16998429 MsG0180001189.01.T01:CDS
TATATACTCAATGACAGTCT+TGG 0.498477 1:+17000655 MsG0180001189.01.T01:CDS
TTCTCGTGTAGTTAAGGGTA+TGG 0.502945 1:+16999218 MsG0180001189.01.T01:CDS
CCCATGGTTGCTCCTCCTCA+AGG 0.503965 1:+16997800 MsG0180001189.01.T01:CDS
CTTAATGGTGCAGGAGGTGG+AGG 0.506487 1:+17000618 MsG0180001189.01.T01:intron
TATGGAATCGGCAGTGAGCC+CGG 0.510215 1:-16998416 None:intergenic
CACGGATCCATTGCTTATCA+GGG 0.512422 1:-16997604 None:intergenic
GGAGTTGGTTCAAGGACGGT+GGG 0.515916 1:+17001202 MsG0180001189.01.T01:CDS
CTCCATTGGATCAATTGTCA+TGG 0.517675 1:-16999816 None:intergenic
CGATTTGAGACATTAATCTC+TGG 0.518772 1:-16998142 None:intergenic
CGTTTCAGATTCGGTATGGC+GGG 0.519372 1:+16998683 MsG0180001189.01.T01:CDS
AGGAGTTGGTTCAAGGACGG+TGG 0.520986 1:+17001201 MsG0180001189.01.T01:CDS
GTACAATGAAGGTATGAAAA+GGG 0.521264 1:+17001311 MsG0180001189.01.T01:CDS
TCTCTTTCCCGGATTCCTCA+AGG 0.521773 1:+16995959 MsG0180001189.01.T01:five_prime_UTR
CGACAGACCTTGAGGAATCC+GGG 0.522205 1:-16995966 None:intergenic
AGAGATTAATGTCTCAAATC+GGG 0.524276 1:+16998144 MsG0180001189.01.T01:CDS
CTATGGCTGTGAGGTCCCTA+AGG 0.525069 1:+17001169 MsG0180001189.01.T01:CDS
GTTCCGGAAGTGATCTAGAC+GGG 0.525385 1:+16999753 MsG0180001189.01.T01:CDS
CTAAATATGCTGCTAGACTT+GGG 0.526193 1:+16998479 MsG0180001189.01.T01:CDS
TACATCCTTCACACTTGAAG+TGG 0.526578 1:+17000942 MsG0180001189.01.T01:CDS
CATGATCCAATACAATAGGT+TGG 0.528368 1:-16999850 None:intergenic
TGATTCGGATATGGAATTCG+AGG 0.528929 1:+17000978 MsG0180001189.01.T01:CDS
AGATCATGCTACATATATGA+TGG 0.530126 1:+16996314 MsG0180001189.01.T01:CDS
CTTCACACTTGAAGTGGCTA+AGG 0.531272 1:+17000948 MsG0180001189.01.T01:CDS
GGATCATGATGTTGAGATTG+AGG 0.532865 1:+16999865 MsG0180001189.01.T01:CDS
GCTCACTGCCGATTCCATAA+GGG 0.535707 1:+16998420 MsG0180001189.01.T01:CDS
AGAGGCGAGGAGTTGGTTCA+AGG 0.537281 1:+17001194 MsG0180001189.01.T01:CDS
ACCCATGACAATTGATCCAA+TGG 0.540648 1:+16999814 MsG0180001189.01.T01:CDS
AGCTTTGCAAGTTCAATACA+TGG 0.541886 1:-17000739 None:intergenic
CTACAAGTTGGGAAATCTGA+TGG 0.542458 1:+17001050 MsG0180001189.01.T01:CDS
CAATCCGGATGTTGTTCCCA+TGG 0.542528 1:+16997784 MsG0180001189.01.T01:CDS
TATAGGAAAATCAAAAGAGT+TGG 0.542790 1:+16996068 MsG0180001189.01.T01:intron
GTTTGAACTTCTTATCGTCA+TGG 0.543349 1:-16996563 None:intergenic
TAAGGAAAGAGGCGAGGAGT+TGG 0.543723 1:+17001187 MsG0180001189.01.T01:CDS
TGCAAAGACTGTGTGTGCAT+TGG 0.543894 1:-17000686 None:intergenic
ATTCGGTATGGCGGGTACAA+AGG 0.545736 1:+16998691 MsG0180001189.01.T01:CDS
GCGCAAAGCTGGCACATCCA+CGG 0.545974 1:-16999295 None:intergenic
TATATCTTTGGATAACGGGT+TGG 0.546193 1:+16998069 MsG0180001189.01.T01:CDS
GCTAGAATGCATCCTCATCA+TGG 0.546595 1:-17001397 None:intergenic
GAGAATATTAGTGACTTCAC+CGG 0.548250 1:-16998980 None:intergenic
ACATCGCCCGGGTGCAAGCA+GGG 0.548794 1:-16999258 None:intergenic
CAATATGTTGATGGAAATGA+CGG 0.550215 1:-16998171 None:intergenic
CTGCCGATTCCATAAGGGAA+TGG 0.552932 1:+16998425 MsG0180001189.01.T01:CDS
CTTATCTACTCTTGATGTCA+AGG 0.553291 1:+16998858 MsG0180001189.01.T01:CDS
AGAATGACTGCTGAACCTAT+TGG 0.553702 1:-16999199 None:intergenic
CCACAAAAGTATACTTTGCA+TGG 0.555207 1:-16998118 None:intergenic
TGGGAAGAATCATACTCCAT+TGG 0.555316 1:-16999830 None:intergenic
TATTCTTTGGCGAAAAGATG+AGG 0.556058 1:-17000814 None:intergenic
TACATTCTTTGATTTATAGG+TGG 0.561468 1:-17000866 None:intergenic
AACTCAACCTTTATTCTGAG+TGG 0.564774 1:-16997926 None:intergenic
TCCTTGAGGAGGAGCAACCA+TGG 0.565876 1:-16997801 None:intergenic
TCTGCGTTTCAGATTCGGTA+TGG 0.566297 1:+16998679 MsG0180001189.01.T01:CDS
TGAAATTATTCCTGACGCGA+AGG 0.567517 1:+16998552 MsG0180001189.01.T01:CDS
ATTCTTTGGCGAAAAGATGA+GGG 0.569082 1:-17000813 None:intergenic
CAAGGTATTTCAACTGAGGG+TGG 0.570622 1:+17000913 MsG0180001189.01.T01:CDS
GAAATATTTCACCAAAAGAA+GGG 0.573777 1:+17001131 MsG0180001189.01.T01:CDS
CTTCATAATATAATATACAA+AGG 0.574865 1:-17001556 None:intergenic
CGGGTTGGTATATGTTCGCA+GGG 0.575499 1:+16998084 MsG0180001189.01.T01:CDS
GATACTAACAGATTCAACTA+AGG 0.575676 1:+16998930 MsG0180001189.01.T01:CDS
GTTCATTATGAGGAAATCGA+GGG 0.575939 1:+16997725 MsG0180001189.01.T01:CDS
GAGATTTGTTCAAATTCGAA+CGG 0.576394 1:+16996263 MsG0180001189.01.T01:CDS
TGTTCATTATGAGGAAATCG+AGG 0.578092 1:+16997724 MsG0180001189.01.T01:CDS
GACAACTTCACAGACGAGGT+TGG 0.580619 1:-16998730 None:intergenic
ACAAACCATAGTAACTATGA+TGG 0.581319 1:-17001290 None:intergenic
ATTCAAGGTATTTCAACTGA+GGG 0.581387 1:+17000910 MsG0180001189.01.T01:CDS
ACTGAATCAGAAATCCTAAG+TGG 0.581610 1:+17001090 MsG0180001189.01.T01:CDS
TATATGCAAAAGCTTCTGCT+TGG 0.581961 1:+17001253 MsG0180001189.01.T01:CDS
AACTAGAACCTTAGAATATG+GGG 0.582040 1:+16999155 MsG0180001189.01.T01:CDS
TCATTTGTGGTATTATCAAG+TGG 0.582062 1:+17001584 MsG0180001189.01.T01:three_prime_UTR
TTTCACCAAAAGAAGGGATG+CGG 0.582713 1:+17001137 MsG0180001189.01.T01:CDS
GAGATTCCCCTGATAAGCAA+TGG 0.583787 1:+16997597 MsG0180001189.01.T01:CDS
TCAAAACACGAACATCGCCC+GGG 0.584003 1:-16999269 None:intergenic
TCTGTTATGAACCTGCAAGA+TGG 0.584270 1:+16997990 MsG0180001189.01.T01:CDS
GATTCGGATATGGAATTCGA+GGG 0.584692 1:+17000979 MsG0180001189.01.T01:CDS
TCCATTGGATCAATTGTCAT+GGG 0.585286 1:-16999815 None:intergenic
TGTGAGGTCCCTAAGGAAAG+AGG 0.585768 1:+17001176 MsG0180001189.01.T01:CDS
TGTGCCAGCTTTGCGCCACA+TGG 0.587567 1:+16999302 MsG0180001189.01.T01:CDS
CCGTTATCCAAAGATATAGT+CGG 0.588330 1:-16998064 None:intergenic
AGTTGCGTGAAAACTCGCTA+TGG 0.589305 1:+16998374 MsG0180001189.01.T01:CDS
GGTATTTGAATTCCTTGAGG+AGG 0.592430 1:-16997812 None:intergenic
TGAAGTCACTAATATTCTCA+AGG 0.594963 1:+16998984 MsG0180001189.01.T01:CDS
CTTAGCCACTTCAAGTGTGA+AGG 0.595199 1:-17000947 None:intergenic
TACCGAATCTGAAACGCAGA+TGG 0.597963 1:-16998676 None:intergenic
GTTAATTCCTTGGTTCAGCA+CGG 0.599114 1:+16997854 MsG0180001189.01.T01:CDS
GATGAGGATGCATTCTAGCA+TGG 0.601811 1:+17001401 MsG0180001189.01.T01:CDS
GCGTTTCAGATTCGGTATGG+CGG 0.606083 1:+16998682 MsG0180001189.01.T01:CDS
AGAAATGGCATAGATATTGG+TGG 0.607871 1:+16998316 MsG0180001189.01.T01:CDS
GAAAGATTCTCTGTATTATG+GGG 0.608306 1:+16996480 MsG0180001189.01.T01:CDS
TGTTTGCTCGTGCAACAACC+GGG 0.609914 1:+16998398 MsG0180001189.01.T01:CDS
TCTTGAACTTGCCAGGAGAG+TGG 0.610132 1:+16998627 MsG0180001189.01.T01:CDS
AGATTCAACTAAGGCACATG+AGG 0.610998 1:+16998939 MsG0180001189.01.T01:CDS
ACAAAAGGAAGAGCAATGAT+GGG 0.611324 1:+16999120 MsG0180001189.01.T01:CDS
AAGACAGCCGTGCTGAACCA+AGG 0.611534 1:-16997861 None:intergenic
TCAGGCACGGTCACACGATG+AGG 0.612794 1:-16996135 None:intergenic
CCTTGAGGAGGAGCAACCAT+GGG 0.613313 1:-16997800 None:intergenic
ATTGGATCAATTGTCATGGG+TGG 0.613821 1:-16999812 None:intergenic
GCCAGCTTTGCGCCACATGG+TGG 0.616294 1:+16999305 MsG0180001189.01.T01:CDS
AATGGTATTTGAATTCCTTG+AGG 0.617830 1:-16997815 None:intergenic
AATTCAAGGTATTTCAACTG+AGG 0.618205 1:+17000909 MsG0180001189.01.T01:CDS
CTGAATCAGAAATCCTAAGT+GGG 0.618883 1:+17001091 MsG0180001189.01.T01:CDS
GATATAGTCGGTGACCGAGG+CGG 0.624049 1:-16998052 None:intergenic
AGGAATCTTTAGACATATAG+CGG 0.630016 1:-16997666 None:intergenic
AAAGATATAGTCGGTGACCG+AGG 0.632533 1:-16998055 None:intergenic
AGAAGGAGAAAGCCATGATG+AGG 0.633781 1:+17001385 MsG0180001189.01.T01:CDS
AGATTGAACTGCATCAACCA+TGG 0.634369 1:+16996613 MsG0180001189.01.T01:CDS
AATCTGTAGAAGAATGCCGT+TGG 0.636903 1:-16996417 None:intergenic
TTTGCTGGTCCAAATCAAGA+AGG 0.636907 1:+17001368 MsG0180001189.01.T01:CDS
AATTGTCGATTGAGATAACA+AGG 0.636922 1:-16998826 None:intergenic
CCTGACGCGAAGGTTAAACA+TGG 0.640840 1:+16998562 MsG0180001189.01.T01:CDS
AGATATTGATCCAAAGCCAA+CGG 0.640968 1:+16996401 MsG0180001189.01.T01:CDS
CAGGCACGGTCACACGATGA+GGG 0.641211 1:-16996134 None:intergenic
TCTCTGTAATAGTTCTTCAG+AGG 0.641395 1:-16997578 None:intergenic
TTCTTTGGCGAAAAGATGAG+GGG 0.641437 1:-17000812 None:intergenic
AATCGAGGGTCAATACACAT+TGG 0.643950 1:+16997739 MsG0180001189.01.T01:CDS
AGCAAATGGTAAACACACCA+TGG 0.644967 1:-17001351 None:intergenic
GGTCAATACACATTGGAGAG+AGG 0.645380 1:+16997746 MsG0180001189.01.T01:CDS
GCGAGGAGTTGGTTCAAGGA+CGG 0.645881 1:+17001198 MsG0180001189.01.T01:CDS
TCAGTGCAAATAATCCGCCT+CGG 0.645936 1:+16998038 MsG0180001189.01.T01:CDS
GACTGCCCAATACAACTGCA+AGG 0.646493 1:-16997641 None:intergenic
AAGGAGTGAAGTCTATCGCA+CGG 0.653652 1:-16997622 None:intergenic
TGTTCCGGAAGTGATCTAGA+CGG 0.654419 1:+16999752 MsG0180001189.01.T01:CDS
CTCAAGGAGATGCTTATCTG+TGG 0.655771 1:+16999000 MsG0180001189.01.T01:CDS
GAGTTGGTTCAAGGACGGTG+GGG 0.658089 1:+17001203 MsG0180001189.01.T01:CDS
AAATGTCTTTACATCAGGCA+CGG 0.659012 1:-16996148 None:intergenic
ACGTGTTTCATTTGTCGACG+AGG 0.664685 1:+16998204 MsG0180001189.01.T01:CDS
CAGTGACAACTTCACAGACG+AGG 0.667927 1:-16998734 None:intergenic
ACGGATCCATTGCTTATCAG+GGG 0.669281 1:-16997603 None:intergenic
TGGCGGGTACAAAGGAGTCG+TGG 0.670307 1:+16998699 MsG0180001189.01.T01:CDS
GATTCCATAAGGGAATGGAT+GGG 0.679529 1:+16998430 MsG0180001189.01.T01:CDS
GGTCCCTAAGGAAAGAGGCG+AGG 0.679645 1:+17001181 MsG0180001189.01.T01:CDS
TCTTTGGCGAAAAGATGAGG+GGG 0.692139 1:-17000811 None:intergenic
ATATGTAGCATGATCTGTAG+TGG 0.696738 1:-16996307 None:intergenic
TATATGATGGCCTTACGTAG+CGG 0.700749 1:+16996327 MsG0180001189.01.T01:CDS
AAACAACACAATCCACCATG+TGG 0.707365 1:-16999317 None:intergenic
GTATACTGGTGAAGAAAGTG+TGG 0.711055 1:+16996179 MsG0180001189.01.T01:CDS
TATGTTGATGGAAATGACGG+AGG 0.713916 1:-16998168 None:intergenic
TTCCGGAAGTGATCTAGACG+GGG 0.717127 1:+16999754 MsG0180001189.01.T01:CDS
ATGCGATTACTATGGCTGTG+AGG 0.723294 1:+17001160 MsG0180001189.01.T01:CDS
CGTCTGTGAAGTTGTCACTG+AGG 0.737656 1:+16998737 MsG0180001189.01.T01:CDS
GAGGCGGATTATTTGCACTG+AGG 0.762972 1:-16998036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTCAAAAAAAGAAAA+TGG - Chr1:16996032-16996051 None:intergenic 10.0%
!!! TCATTTCTTTTATTATATAT+TGG + Chr1:16995841-16995860 MsG0180001189.01.T01:five_prime_UTR 10.0%
!! AACAAATAAGATTTATCATA+TGG - Chr1:16997479-16997498 None:intergenic 15.0%
!! ACAAATAAGATTTATCATAT+GGG - Chr1:16997478-16997497 None:intergenic 15.0%
!! CTTCATAATATAATATACAA+AGG - Chr1:17001559-17001578 None:intergenic 15.0%
!! TATAAAAAAATGACAAAAGA+GGG - Chr1:16999675-16999694 None:intergenic 15.0%
!! TATAAATCAAAGAATGTAAT+AGG + Chr1:17000871-17000890 MsG0180001189.01.T01:CDS 15.0%
!! TTATAAAAAAATGACAAAAG+AGG - Chr1:16999676-16999695 None:intergenic 15.0%
!!! ATATTATTTTGACAAAAGAA+TGG + Chr1:16999618-16999637 MsG0180001189.01.T01:intron 15.0%
!!! ATGTTTATTTTTAGAAAGTA+AGG - Chr1:16997324-16997343 None:intergenic 15.0%
!!! TATTACATTCTTTGATTTAT+AGG - Chr1:17000872-17000891 None:intergenic 15.0%
!!! TTTTTCTGTATTTTTTGTAT+GGG + Chr1:16999920-16999939 MsG0180001189.01.T01:intron 15.0%
!!! TTTTTTCTGTATTTTTTGTA+TGG + Chr1:16999919-16999938 MsG0180001189.01.T01:intron 15.0%
!! ACTAGGATATTTATTACAAA+AGG + Chr1:16999105-16999124 MsG0180001189.01.T01:CDS 20.0%
!! CTATTTAAAAGTTACGAAAA+TGG + Chr1:16996374-16996393 MsG0180001189.01.T01:CDS 20.0%
!! CTTAATTAAGTATTCAAACA+AGG + Chr1:17000578-17000597 MsG0180001189.01.T01:intron 20.0%
!! GAAAATTATCAATATGTTGA+TGG - Chr1:16998183-16998202 None:intergenic 20.0%
!! TGATTCAGATAACATAAAAT+TGG + Chr1:16998777-16998796 MsG0180001189.01.T01:CDS 20.0%
!!! ACAATGTTTGGTTTTTTTTT+TGG + Chr1:16996907-16996926 MsG0180001189.01.T01:intron 20.0%
!!! ATGTAATAGGAAAACTTTTT+AGG + Chr1:17000884-17000903 MsG0180001189.01.T01:CDS 20.0%
!!! ATTGATTTATGATACATCTA+TGG + Chr1:16997008-16997027 MsG0180001189.01.T01:intron 20.0%
!!! ATTTAGCCACATTTTTTATA+TGG - Chr1:16998465-16998484 None:intergenic 20.0%
!!! ATTTTGTTTTTCTTTTCAGT+AGG + Chr1:17000113-17000132 MsG0180001189.01.T01:intron 20.0%
!!! CAATGTTTGGTTTTTTTTTT+GGG + Chr1:16996908-16996927 MsG0180001189.01.T01:intron 20.0%
!!! CATTTTCGTAACTTTTAAAT+AGG - Chr1:16996376-16996395 None:intergenic 20.0%
!!! GATTTTTTATGAACAATGTT+TGG + Chr1:16996895-16996914 MsG0180001189.01.T01:intron 20.0%
!!! TGTAATAGGAAAACTTTTTA+GGG + Chr1:17000885-17000904 MsG0180001189.01.T01:CDS 20.0%
!!! TTTTAGCCATATAAAAAATG+TGG + Chr1:16998456-16998475 MsG0180001189.01.T01:CDS 20.0%
! AAAAAGGAAAATGAAGAACA+TGG - Chr1:16996700-16996719 None:intergenic 25.0%
! AAACTAGAACCTTAGAATAT+GGG + Chr1:16999154-16999173 MsG0180001189.01.T01:CDS 25.0%
! AAATACAGAAAAAATGCCTA+TGG - Chr1:16999913-16999932 None:intergenic 25.0%
! AATGGTATATCTAAGAAAGA+AGG - Chr1:16996014-16996033 None:intergenic 25.0%
! ACTGCTAATGTAAAAAACAT+AGG - Chr1:17000294-17000313 None:intergenic 25.0%
! ACTGTCATTGAGTATATAAT+TGG - Chr1:17000653-17000672 None:intergenic 25.0%
! ACTTTAAACAAGATGTGAAA+TGG - Chr1:16997836-16997855 None:intergenic 25.0%
! ACTTTGCATGTAGATATTTA+TGG + Chr1:17001481-17001500 MsG0180001189.01.T01:three_prime_UTR 25.0%
! AGAAAAGTTGTACTATTCAA+AGG + Chr1:16997964-16997983 MsG0180001189.01.T01:CDS 25.0%
! AGAAATACGTGAAGATAAAT+TGG - Chr1:16998251-16998270 None:intergenic 25.0%
! AGCTTTCATATGAGAATATT+TGG + Chr1:16996589-16996608 MsG0180001189.01.T01:CDS 25.0%
! ATAACTTGATTTCTAATACC+AGG + Chr1:16999714-16999733 MsG0180001189.01.T01:intron 25.0%
! GAAATATTTCACCAAAAGAA+GGG + Chr1:17001131-17001150 MsG0180001189.01.T01:CDS 25.0%
! TAACATAAAATTGGATGTTC+TGG + Chr1:16998786-16998805 MsG0180001189.01.T01:CDS 25.0%
! TATAGGAAAATCAAAAGAGT+TGG + Chr1:16996068-16996087 MsG0180001189.01.T01:intron 25.0%
! TCATTAGTCGTATTATTCAT+TGG + Chr1:17001651-17001670 MsG0180001189.01.T01:three_prime_UTR 25.0%
! TTGTTCAATATTCTACCAAT+AGG + Chr1:16999184-16999203 MsG0180001189.01.T01:CDS 25.0%
!! AGTAAAACAATTAAGTTGCA+TGG + Chr1:16996108-16996127 MsG0180001189.01.T01:CDS 25.0%
!! CTTGTTTAAAGTTAATTCCT+TGG + Chr1:16997844-16997863 MsG0180001189.01.T01:CDS 25.0%
!! TACATTCTTTGATTTATAGG+TGG - Chr1:17000869-17000888 None:intergenic 25.0%
!! TATTTTGTAACAAGTATCAG+CGG - Chr1:16999494-16999513 None:intergenic 25.0%
!! TGTCATGATATATCTGATTT+TGG + Chr1:16996834-16996853 MsG0180001189.01.T01:intron 25.0%
!! TTGATTTTCCTATATAGGAT+TGG - Chr1:16996062-16996081 None:intergenic 25.0%
!! TTTTCATAATATTCCCACTT+AGG - Chr1:17001107-17001126 None:intergenic 25.0%
!!! AAACTTTTTAGGGAAATTCA+AGG + Chr1:17000895-17000914 MsG0180001189.01.T01:CDS 25.0%
!!! CTCTTTTGATTTTCCTATAT+AGG - Chr1:16996067-16996086 None:intergenic 25.0%
!!! TTTTTTTTTTGGGTGTAAAC+CGG + Chr1:16996918-16996937 MsG0180001189.01.T01:intron 25.0%
AAAAACTTCCCCATATTCTA+AGG - Chr1:16999166-16999185 None:intergenic 30.0%
AAACTTTATTACCACTGCAT+AGG + Chr1:16997200-16997219 MsG0180001189.01.T01:intron 30.0%
AAAGTTGAAGAGAGCAAAAT+TGG - Chr1:16997389-16997408 None:intergenic 30.0%
AACCAATTATGACTACAAGT+TGG + Chr1:17001038-17001057 MsG0180001189.01.T01:CDS 30.0%
AACTAGAACCTTAGAATATG+GGG + Chr1:16999155-16999174 MsG0180001189.01.T01:CDS 30.0%
AATAAGCTAAAAACAGCTGA+TGG - Chr1:17000426-17000445 None:intergenic 30.0%
AATGGTATTTGAATTCCTTG+AGG - Chr1:16997818-16997837 None:intergenic 30.0%
ACAAACCATAGTAACTATGA+TGG - Chr1:17001293-17001312 None:intergenic 30.0%
ACATCATGATCCAATACAAT+AGG - Chr1:16999857-16999876 None:intergenic 30.0%
ACCAATTATGACTACAAGTT+GGG + Chr1:17001039-17001058 MsG0180001189.01.T01:CDS 30.0%
ACTTACCATCATAGTTACTA+TGG + Chr1:17001285-17001304 MsG0180001189.01.T01:CDS 30.0%
AGACAATTTAGAAGAGCTTA+TGG + Chr1:17000382-17000401 MsG0180001189.01.T01:intron 30.0%
AGAGATTAATGTCTCAAATC+GGG + Chr1:16998144-16998163 MsG0180001189.01.T01:CDS 30.0%
AGATCATGCTACATATATGA+TGG + Chr1:16996314-16996333 MsG0180001189.01.T01:CDS 30.0%
AGGAAAGATTCTCTGTATTA+TGG + Chr1:16996478-16996497 MsG0180001189.01.T01:CDS 30.0%
AGGAATCTTTAGACATATAG+CGG - Chr1:16997669-16997688 None:intergenic 30.0%
AGTAATGTCCAATGAGAAAA+TGG - Chr1:16999572-16999591 None:intergenic 30.0%
ATGATCCAATACAATAGGTT+GGG - Chr1:16999852-16999871 None:intergenic 30.0%
ATGCATAAAACTGTAAGTGT+TGG - Chr1:16999528-16999547 None:intergenic 30.0%
ATGGCTATAGTAAGATTTGA+AGG + Chr1:16997027-16997046 MsG0180001189.01.T01:intron 30.0%
ATTCTTTCCATCCTTAGAAA+TGG + Chr1:16998301-16998320 MsG0180001189.01.T01:CDS 30.0%
CAGAGATTAATGTCTCAAAT+CGG + Chr1:16998143-16998162 MsG0180001189.01.T01:CDS 30.0%
CGAAATATTTCACCAAAAGA+AGG + Chr1:17001130-17001149 MsG0180001189.01.T01:CDS 30.0%
CTCTTCTGTTTGTAGTTAAT+TGG + Chr1:16997500-16997519 MsG0180001189.01.T01:intron 30.0%
CTTAGAAATGGCATAGATAT+TGG + Chr1:16998313-16998332 MsG0180001189.01.T01:CDS 30.0%
GAAACTAGAACCTTAGAATA+TGG + Chr1:16999153-16999172 MsG0180001189.01.T01:CDS 30.0%
GAAAGATTCTCTGTATTATG+GGG + Chr1:16996480-16996499 MsG0180001189.01.T01:CDS 30.0%
GAAATAAAAATTGCTGCTGT+TGG - Chr1:16997283-16997302 None:intergenic 30.0%
GATACTAACAGATTCAACTA+AGG + Chr1:16998930-16998949 MsG0180001189.01.T01:CDS 30.0%
GGAAAACTTTGTTCATTATG+AGG + Chr1:16997715-16997734 MsG0180001189.01.T01:CDS 30.0%
GGAAAGATTCTCTGTATTAT+GGG + Chr1:16996479-16996498 MsG0180001189.01.T01:CDS 30.0%
GTATTCAAACAAGGATATGT+TGG + Chr1:17000587-17000606 MsG0180001189.01.T01:intron 30.0%
GTGTGGTTGCTATAAAAATA+AGG + Chr1:16996196-16996215 MsG0180001189.01.T01:CDS 30.0%
TAAACCCAGTATAAAAACCT+AGG - Chr1:16997139-16997158 None:intergenic 30.0%
TATATACTCAATGACAGTCT+TGG + Chr1:17000655-17000674 MsG0180001189.01.T01:CDS 30.0%
TATGCAGTGGTAATAAAGTT+TGG - Chr1:16997201-16997220 None:intergenic 30.0%
TCATTTGTGGTATTATCAAG+TGG + Chr1:17001584-17001603 MsG0180001189.01.T01:three_prime_UTR 30.0%
TCTACAAATGTCTTTACATC+AGG - Chr1:16996156-16996175 None:intergenic 30.0%
TGAAGTCACTAATATTCTCA+AGG + Chr1:16998984-16999003 MsG0180001189.01.T01:CDS 30.0%
TTATGAAGCAAACTCATTTG+TGG + Chr1:17001571-17001590 MsG0180001189.01.T01:three_prime_UTR 30.0%
TTTCTTCTCCAATCCTATAT+AGG + Chr1:16996051-16996070 MsG0180001189.01.T01:intron 30.0%
! AAGAATGGACATTTTGTCAT+TGG + Chr1:16999633-16999652 MsG0180001189.01.T01:intron 30.0%
! AATTCAAGGTATTTCAACTG+AGG + Chr1:17000909-17000928 MsG0180001189.01.T01:CDS 30.0%
! AATTGTCGATTGAGATAACA+AGG - Chr1:16998829-16998848 None:intergenic 30.0%
! ACAAAGTTTTCCCTGAAATT+CGG - Chr1:16997707-16997726 None:intergenic 30.0%
! AGTCAATTCCATTTTCTCAT+TGG + Chr1:16999561-16999580 MsG0180001189.01.T01:intron 30.0%
! ATTCAAGGTATTTCAACTGA+GGG + Chr1:17000910-17000929 MsG0180001189.01.T01:CDS 30.0%
! CAATATCTATGCCATTTCTA+AGG - Chr1:16998315-16998334 None:intergenic 30.0%
! CAATATGTTGATGGAAATGA+CGG - Chr1:16998174-16998193 None:intergenic 30.0%
! GACGATGTTAAACTGTATTT+TGG + Chr1:16996441-16996460 MsG0180001189.01.T01:CDS 30.0%
! GAGATTTGTTCAAATTCGAA+CGG + Chr1:16996263-16996282 MsG0180001189.01.T01:CDS 30.0%
! GTACAATGAAGGTATGAAAA+GGG + Chr1:17001311-17001330 MsG0180001189.01.T01:CDS 30.0%
! TACTATGGTTTGTACAATGA+AGG + Chr1:17001300-17001319 MsG0180001189.01.T01:CDS 30.0%
! TGTACAATGAAGGTATGAAA+AGG + Chr1:17001310-17001329 MsG0180001189.01.T01:CDS 30.0%
! TTAGATACACTTGTTGATGT+AGG - Chr1:16997554-16997573 None:intergenic 30.0%
! TTTTTCTTTTCAGTAGGAGA+TGG + Chr1:17000119-17000138 MsG0180001189.01.T01:intron 30.0%
! TTTTTGCTCCATATGAACTA+TGG + Chr1:16996773-16996792 MsG0180001189.01.T01:intron 30.0%
!! ATTCTGTTGATAATGCACAA+TGG - Chr1:16999385-16999404 None:intergenic 30.0%
!! TAAAACTGTAAGTGTTGGAA+TGG - Chr1:16999523-16999542 None:intergenic 30.0%
!! TGCAAAGTATCTATTGATTC+AGG + Chr1:16996644-16996663 MsG0180001189.01.T01:CDS 30.0%
!!! TACTTTGCAGTTTTAAACCA+TGG - Chr1:16996633-16996652 None:intergenic 30.0%
!!! TGTGTTGTTTTTCCTCAAAA+AGG + Chr1:16999330-16999349 MsG0180001189.01.T01:CDS 30.0%
!!! TTTTTTTTTGGGTGTAAACC+GGG + Chr1:16996919-16996938 MsG0180001189.01.T01:intron 30.0%
AAATATCTCTTGAACTTGCC+AGG + Chr1:16998620-16998639 MsG0180001189.01.T01:CDS 35.0%
AAATGTCTTTACATCAGGCA+CGG - Chr1:16996151-16996170 None:intergenic 35.0%
AACATCCACCATAGTTCATA+TGG - Chr1:16996784-16996803 None:intergenic 35.0%
AACTCAACCTTTATTCTGAG+TGG - Chr1:16997929-16997948 None:intergenic 35.0%
AATGATGCTGCAGACATTTA+GGG + Chr1:16999053-16999072 MsG0180001189.01.T01:CDS 35.0%
ACAAAAGGAAGAGCAATGAT+GGG + Chr1:16999120-16999139 MsG0180001189.01.T01:CDS 35.0%
ACAGTTATCACTGTACAAAC+TGG - Chr1:16997178-16997197 None:intergenic 35.0%
ACATTAAGCTCAAAAACACG+AGG - Chr1:16997530-16997549 None:intergenic 35.0%
ACATTTGTAGAGCAGTATAC+TGG + Chr1:16996165-16996184 MsG0180001189.01.T01:CDS 35.0%
ACCATGGAAAGCTTAGAAAA+TGG - Chr1:17001338-17001357 None:intergenic 35.0%
ACTGAATCAGAAATCCTAAG+TGG + Chr1:17001090-17001109 MsG0180001189.01.T01:CDS 35.0%
AGAAATGGCATAGATATTGG+TGG + Chr1:16998316-16998335 MsG0180001189.01.T01:CDS 35.0%
AGATATTGATCCAAAGCCAA+CGG + Chr1:16996401-16996420 MsG0180001189.01.T01:CDS 35.0%
AGCGGAAAAAAATTGCAGTT+CGG + Chr1:16996345-16996364 MsG0180001189.01.T01:CDS 35.0%
AGCTTTGCAAGTTCAATACA+TGG - Chr1:17000742-17000761 None:intergenic 35.0%
AGTCATTCTCGTGTAGTTAA+GGG + Chr1:16999213-16999232 MsG0180001189.01.T01:CDS 35.0%
AGTTGATCCACTCAGAATAA+AGG + Chr1:16997919-16997938 MsG0180001189.01.T01:CDS 35.0%
ATATGTAGCATGATCTGTAG+TGG - Chr1:16996310-16996329 None:intergenic 35.0%
ATGGAACAAAGTTTCAGTTC+TGG + Chr1:17001420-17001439 MsG0180001189.01.T01:CDS 35.0%
ATTCTTTGGCGAAAAGATGA+GGG - Chr1:17000816-17000835 None:intergenic 35.0%
CAAAGAATATCCAGACTTCA+TGG + Chr1:17000828-17000847 MsG0180001189.01.T01:CDS 35.0%
CATGAAGTCTGGATATTCTT+TGG - Chr1:17000830-17000849 None:intergenic 35.0%
CATGATCCAATACAATAGGT+TGG - Chr1:16999853-16999872 None:intergenic 35.0%
CCGACTATATCTTTGGATAA+CGG + Chr1:16998064-16998083 MsG0180001189.01.T01:CDS 35.0%
CCGTTATCCAAAGATATAGT+CGG - Chr1:16998067-16998086 None:intergenic 35.0%
CGACTATATCTTTGGATAAC+GGG + Chr1:16998065-16998084 MsG0180001189.01.T01:CDS 35.0%
CTAAATATGCTGCTAGACTT+GGG + Chr1:16998479-16998498 MsG0180001189.01.T01:CDS 35.0%
CTCAAGATACCTATTTCACA+AGG - Chr1:16996985-16997004 None:intergenic 35.0%
CTGAATCAGAAATCCTAAGT+GGG + Chr1:17001091-17001110 MsG0180001189.01.T01:CDS 35.0%
CTTATCTACTCTTGATGTCA+AGG + Chr1:16998858-16998877 MsG0180001189.01.T01:CDS 35.0%
CTTGCTCAACATGAAATCAA+AGG - Chr1:16997080-16997099 None:intergenic 35.0%
GAAAGAAATGGCTCAACATT+AGG - Chr1:16999033-16999052 None:intergenic 35.0%
GAGAATATTAGTGACTTCAC+CGG - Chr1:16998983-16999002 None:intergenic 35.0%
GTTCATTATGAGGAAATCGA+GGG + Chr1:16997725-16997744 MsG0180001189.01.T01:CDS 35.0%
GTTTGAACTTCTTATCGTCA+TGG - Chr1:16996566-16996585 None:intergenic 35.0%
TACAAAAGGAAGAGCAATGA+TGG + Chr1:16999119-16999138 MsG0180001189.01.T01:CDS 35.0%
TATATGCAAAAGCTTCTGCT+TGG + Chr1:17001253-17001272 MsG0180001189.01.T01:CDS 35.0%
TATGTCTTCTCTGATGGAAT+CGG + Chr1:16998595-16998614 MsG0180001189.01.T01:CDS 35.0%
TATTCTTTGGCGAAAAGATG+AGG - Chr1:17000817-17000836 None:intergenic 35.0%
TCAAGAATGATGATCAACGA+GGG + Chr1:17000062-17000081 MsG0180001189.01.T01:intron 35.0%
TCCATCAGAGAAGACATATT+CGG - Chr1:16998593-16998612 None:intergenic 35.0%
TCCCAACTTGTAGTCATAAT+TGG - Chr1:17001043-17001062 None:intergenic 35.0%
TCTCTGTAATAGTTCTTCAG+AGG - Chr1:16997581-16997600 None:intergenic 35.0%
TGCAGCATCATTGAAAGAAA+TGG - Chr1:16999045-16999064 None:intergenic 35.0%
TGGAAAATCAACTGCTATTG+AGG - Chr1:17000767-17000786 None:intergenic 35.0%
TGGAACAAAGTTTCAGTTCT+GGG + Chr1:17001421-17001440 MsG0180001189.01.T01:CDS 35.0%
TGGAATTGCGACAAAAAACT+AGG + Chr1:16999088-16999107 MsG0180001189.01.T01:CDS 35.0%
TGTTCATTATGAGGAAATCG+AGG + Chr1:16997724-16997743 MsG0180001189.01.T01:CDS 35.0%
TTCAAGAATGATGATCAACG+AGG + Chr1:17000061-17000080 MsG0180001189.01.T01:intron 35.0%
TTCGGAAAATCTCTGTTACT+AGG - Chr1:16997689-16997708 None:intergenic 35.0%
TTCTTATGCCTTATGAAGCA+TGG - Chr1:17000356-17000375 None:intergenic 35.0%
TTCTTCCCAACCTATTGTAT+TGG + Chr1:16999844-16999863 MsG0180001189.01.T01:CDS 35.0%
! AAAAGAGTTGGCATTGAAGA+TGG + Chr1:16996080-16996099 MsG0180001189.01.T01:exon 35.0%
! ACAGAGATTTTCCGAATTTC+AGG + Chr1:16997693-16997712 MsG0180001189.01.T01:CDS 35.0%
! ACCATTTTCTAAGCTTTCCA+TGG + Chr1:17001334-17001353 MsG0180001189.01.T01:CDS 35.0%
! AGCTCCTAGGTTTTTATACT+GGG + Chr1:16997132-16997151 MsG0180001189.01.T01:intron 35.0%
! ATCACCTTTTTCTTGCAATC+CGG + Chr1:16997769-16997788 MsG0180001189.01.T01:CDS 35.0%
! ATCTATGCCATTTCTAAGGA+TGG - Chr1:16998311-16998330 None:intergenic 35.0%
! ATGGATGCTAGTGTAGATTT+TGG + Chr1:16996507-16996526 MsG0180001189.01.T01:CDS 35.0%
! ATTTAGGGCATCAAAGTTGT+TGG + Chr1:16999068-16999087 MsG0180001189.01.T01:CDS 35.0%
! CAGAGATTTTCCGAATTTCA+GGG + Chr1:16997694-16997713 MsG0180001189.01.T01:CDS 35.0%
! CCACAAAAGTATACTTTGCA+TGG - Chr1:16998121-16998140 None:intergenic 35.0%
! CCATGCAAAGTATACTTTTG+TGG + Chr1:16998118-16998137 MsG0180001189.01.T01:CDS 35.0%
! CGATTTGAGACATTAATCTC+TGG - Chr1:16998145-16998164 None:intergenic 35.0%
! CTTCACGTATTTCTGAGAAT+GGG + Chr1:16998257-16998276 MsG0180001189.01.T01:CDS 35.0%
! GGACATCTACTTTGTTTGTT+GGG + Chr1:16999775-16999794 MsG0180001189.01.T01:CDS 35.0%
! TCTTCACGTATTTCTGAGAA+TGG + Chr1:16998256-16998275 MsG0180001189.01.T01:CDS 35.0%
! TGGATGCTAGTGTAGATTTT+GGG + Chr1:16996508-16996527 MsG0180001189.01.T01:CDS 35.0%
! TTTTTCCTCAAAAAGGTCAC+AGG + Chr1:16999337-16999356 MsG0180001189.01.T01:CDS 35.0%
!! ACAAGGATATGTTGGTAACA+TGG + Chr1:17000595-17000614 MsG0180001189.01.T01:intron 35.0%
!! ATGTTGGTAACATGGCTTAA+TGG + Chr1:17000603-17000622 MsG0180001189.01.T01:intron 35.0%
!! CACTGACTTCAAATAGTTTG+AGG + Chr1:16995885-16995904 MsG0180001189.01.T01:intron 35.0%
!! GCAGTTGATTTTCCAAAAAC+CGG + Chr1:17000772-17000791 MsG0180001189.01.T01:CDS 35.0%
!! TATATCTTTGGATAACGGGT+TGG + Chr1:16998069-16998088 MsG0180001189.01.T01:CDS 35.0%
!!! CAATTTTTTTCCGCTACGTA+AGG - Chr1:16996340-16996359 None:intergenic 35.0%
!!! CTGTACAAACTGGTTTTGTA+AGG - Chr1:16997168-16997187 None:intergenic 35.0%
!!! GATTTATAGGTGGTTTTGTC+AGG - Chr1:17000859-17000878 None:intergenic 35.0%
AAACAACACAATCCACCATG+TGG - Chr1:16999320-16999339 None:intergenic 40.0%
AAGAATGATGATCAACGAGG+GGG + Chr1:17000064-17000083 MsG0180001189.01.T01:intron 40.0%
AATCGAGGGTCAATACACAT+TGG + Chr1:16997739-16997758 MsG0180001189.01.T01:CDS 40.0%
AATCTGTAGAAGAATGCCGT+TGG - Chr1:16996420-16996439 None:intergenic 40.0%
ACATCCGGATTGCAAGAAAA+AGG - Chr1:16997776-16997795 None:intergenic 40.0%
ACCCAAATGCTGCAATTAGA+TGG + Chr1:16997226-16997245 MsG0180001189.01.T01:intron 40.0%
ACCGAATATGTCTTCTCTGA+TGG + Chr1:16998589-16998608 MsG0180001189.01.T01:CDS 40.0%
AGAATGACTGCTGAACCTAT+TGG - Chr1:16999202-16999221 None:intergenic 40.0%
AGATTCAACTAAGGCACATG+AGG + Chr1:16998939-16998958 MsG0180001189.01.T01:CDS 40.0%
AGATTGAACTGCATCAACCA+TGG + Chr1:16996613-16996632 MsG0180001189.01.T01:CDS 40.0%
AGCAAATGGTAAACACACCA+TGG - Chr1:17001354-17001373 None:intergenic 40.0%
AGCCATCTAATTGCAGCATT+TGG - Chr1:16997231-16997250 None:intergenic 40.0%
ATGGTGTGTTTACCATTTGC+TGG + Chr1:17001353-17001372 MsG0180001189.01.T01:CDS 40.0%
CAAGAATGATGATCAACGAG+GGG + Chr1:17000063-17000082 MsG0180001189.01.T01:intron 40.0%
CAATGATGCTGCAGACATTT+AGG + Chr1:16999052-16999071 MsG0180001189.01.T01:CDS 40.0%
CAGTCATTCTCGTGTAGTTA+AGG + Chr1:16999212-16999231 MsG0180001189.01.T01:CDS 40.0%
CATCCATTCCCTTATGGAAT+CGG - Chr1:16998431-16998450 None:intergenic 40.0%
CCTATGGATGTAAAGCTCAA+AGG - Chr1:16999897-16999916 None:intergenic 40.0%
CCTTTGAGCTTTACATCCAT+AGG + Chr1:16999894-16999913 MsG0180001189.01.T01:intron 40.0%
CTCTGTATTATGGGGAAAGA+TGG + Chr1:16996488-16996507 MsG0180001189.01.T01:CDS 40.0%
GATTCCATAAGGGAATGGAT+GGG + Chr1:16998430-16998449 MsG0180001189.01.T01:CDS 40.0%
GATTCGGATATGGAATTCGA+GGG + Chr1:17000979-17000998 MsG0180001189.01.T01:CDS 40.0%
GCCATCTAATTGCAGCATTT+GGG - Chr1:16997230-16997249 None:intergenic 40.0%
GCGGAAAAAAATTGCAGTTC+GGG + Chr1:16996346-16996365 MsG0180001189.01.T01:CDS 40.0%
GCTAAATATGCTGCTAGACT+TGG + Chr1:16998478-16998497 MsG0180001189.01.T01:CDS 40.0%
GGATCATGATGTTGAGATTG+AGG + Chr1:16999865-16999884 MsG0180001189.01.T01:CDS 40.0%
GGCTAAGGAGTCATATGATT+CGG + Chr1:17000963-17000982 MsG0180001189.01.T01:CDS 40.0%
GGTATTTGAATTCCTTGAGG+AGG - Chr1:16997815-16997834 None:intergenic 40.0%
GTATACTGGTGAAGAAAGTG+TGG + Chr1:16996179-16996198 MsG0180001189.01.T01:CDS 40.0%
GTCAAACTCCATGCTTCATA+AGG + Chr1:17000345-17000364 MsG0180001189.01.T01:intron 40.0%
GTTAATTCCTTGGTTCAGCA+CGG + Chr1:16997854-16997873 MsG0180001189.01.T01:CDS 40.0%
TACATCCTTCACACTTGAAG+TGG + Chr1:17000942-17000961 MsG0180001189.01.T01:CDS 40.0%
TATGGAATTCGAGGGCTTTA+TGG + Chr1:17000987-17001006 MsG0180001189.01.T01:CDS 40.0%
TCACTCCTTGCAGTTGTATT+GGG + Chr1:16997636-16997655 MsG0180001189.01.T01:CDS 40.0%
TCTAATTGCAGCATTTGGGT+TGG - Chr1:16997226-16997245 None:intergenic 40.0%
TCTGTTATGAACCTGCAAGA+TGG + Chr1:16997990-16998009 MsG0180001189.01.T01:CDS 40.0%
TGAAATTATTCCTGACGCGA+AGG + Chr1:16998552-16998571 MsG0180001189.01.T01:CDS 40.0%
TGGAAATTCTGCTTTCCTTG+TGG - Chr1:16997263-16997282 None:intergenic 40.0%
TGGCTTTCTCCTTCTTGATT+TGG - Chr1:17001380-17001399 None:intergenic 40.0%
TGGGAAGAATCATACTCCAT+TGG - Chr1:16999833-16999852 None:intergenic 40.0%
TTCACTCCTTGCAGTTGTAT+TGG + Chr1:16997635-16997654 MsG0180001189.01.T01:CDS 40.0%
TTCTCGTGTAGTTAAGGGTA+TGG + Chr1:16999218-16999237 MsG0180001189.01.T01:CDS 40.0%
TTCTTTGGCGAAAAGATGAG+GGG - Chr1:17000815-17000834 None:intergenic 40.0%
TTGCTCCATATGAACTATGG+TGG + Chr1:16996776-16996795 MsG0180001189.01.T01:intron 40.0%
TTGGGATTGGATTGAGAAAG+TGG + Chr1:16996526-16996545 MsG0180001189.01.T01:CDS 40.0%
TTTCACCAAAAGAAGGGATG+CGG + Chr1:17001137-17001156 MsG0180001189.01.T01:CDS 40.0%
TTTGCTGGTCCAAATCAAGA+AGG + Chr1:17001368-17001387 MsG0180001189.01.T01:CDS 40.0%
! AACTAAGGCACATGAGGTTT+TGG + Chr1:16998945-16998964 MsG0180001189.01.T01:CDS 40.0%
! ATCTACCTGTGACCTTTTTG+AGG - Chr1:16999345-16999364 None:intergenic 40.0%
! CAGCTCCTAGGTTTTTATAC+TGG + Chr1:16997131-16997150 MsG0180001189.01.T01:intron 40.0%
! CCTTTTGACGCTTAGAGTTT+CGG - Chr1:16998524-16998543 None:intergenic 40.0%
! CTACAAGTTGGGAAATCTGA+TGG + Chr1:17001050-17001069 MsG0180001189.01.T01:CDS 40.0%
! GGAGTCATATGATTCGGATA+TGG + Chr1:17000969-17000988 MsG0180001189.01.T01:CDS 40.0%
! GGGACATCTACTTTGTTTGT+TGG + Chr1:16999774-16999793 MsG0180001189.01.T01:CDS 40.0%
! TATATGATGGCCTTACGTAG+CGG + Chr1:16996327-16996346 MsG0180001189.01.T01:CDS 40.0%
! TATGTTGATGGAAATGACGG+AGG - Chr1:16998171-16998190 None:intergenic 40.0%
! TGATTCGGATATGGAATTCG+AGG + Chr1:17000978-17000997 MsG0180001189.01.T01:CDS 40.0%
!! AACTGTAAGTGTTGGAATGG+AGG - Chr1:16999520-16999539 None:intergenic 40.0%
!! GGAAATCTGATGGACTACTA+TGG + Chr1:17001060-17001079 MsG0180001189.01.T01:CDS 40.0%
!! GTTTTGGACTTGATGTGTTC+CGG + Chr1:16998961-16998980 MsG0180001189.01.T01:CDS 40.0%
!! TCTTGATTTGGACCAGCAAA+TGG - Chr1:17001368-17001387 None:intergenic 40.0%
!! TTTTGGCTGTCAGATCTCAA+AGG + Chr1:16996458-16996477 MsG0180001189.01.T01:CDS 40.0%
!!! GCTAGTGTAGATTTTGGGAT+TGG + Chr1:16996513-16996532 MsG0180001189.01.T01:CDS 40.0%
AAAGATATAGTCGGTGACCG+AGG - Chr1:16998058-16998077 None:intergenic 45.0%
AAGGAGTGAAGTCTATCGCA+CGG - Chr1:16997625-16997644 None:intergenic 45.0%
ACCTATTTCACAAGGCTCGA+TGG - Chr1:16996977-16996996 None:intergenic 45.0%
ACGGATCCATTGCTTATCAG+GGG - Chr1:16997606-16997625 None:intergenic 45.0%
ACGTGTTTCATTTGTCGACG+AGG + Chr1:16998204-16998223 MsG0180001189.01.T01:CDS 45.0%
AGAAGGAGAAAGCCATGATG+AGG + Chr1:17001385-17001404 MsG0180001189.01.T01:CDS 45.0%
AGGAGAGTGGCTGAAAAATG+TGG + Chr1:16998640-16998659 MsG0180001189.01.T01:CDS 45.0%
AGTTGCGTGAAAACTCGCTA+TGG + Chr1:16998374-16998393 MsG0180001189.01.T01:CDS 45.0%
ATCTCCCATCCATTCCCTTA+TGG - Chr1:16998437-16998456 None:intergenic 45.0%
ATGCGATTACTATGGCTGTG+AGG + Chr1:17001160-17001179 MsG0180001189.01.T01:CDS 45.0%
ATGTTTGCTCGTGCAACAAC+CGG + Chr1:16998397-16998416 MsG0180001189.01.T01:CDS 45.0%
CACGGATCCATTGCTTATCA+GGG - Chr1:16997607-16997626 None:intergenic 45.0%
CCGAAACTCTAAGCGTCAAA+AGG + Chr1:16998521-16998540 MsG0180001189.01.T01:CDS 45.0%
CGATTCCATAAGGGAATGGA+TGG + Chr1:16998429-16998448 MsG0180001189.01.T01:CDS 45.0%
CTCAAGGAGATGCTTATCTG+TGG + Chr1:16999000-16999019 MsG0180001189.01.T01:CDS 45.0%
CTTAGCCACTTCAAGTGTGA+AGG - Chr1:17000950-17000969 None:intergenic 45.0%
CTTCACACTTGAAGTGGCTA+AGG + Chr1:17000948-17000967 MsG0180001189.01.T01:CDS 45.0%
GACATTCTTGCTCTCTTTCC+CGG + Chr1:16995948-16995967 MsG0180001189.01.T01:five_prime_UTR 45.0%
GAGATTCCCCTGATAAGCAA+TGG + Chr1:16997597-16997616 MsG0180001189.01.T01:CDS 45.0%
GATGAGGATGCATTCTAGCA+TGG + Chr1:17001401-17001420 MsG0180001189.01.T01:CDS 45.0%
GCTAGAATGCATCCTCATCA+TGG - Chr1:17001400-17001419 None:intergenic 45.0%
GGTCAATACACATTGGAGAG+AGG + Chr1:16997746-16997765 MsG0180001189.01.T01:CDS 45.0%
GTAACATGGCTTAATGGTGC+AGG + Chr1:17000609-17000628 MsG0180001189.01.T01:intron 45.0%
TCAGTGCAAATAATCCGCCT+CGG + Chr1:16998038-16998057 MsG0180001189.01.T01:CDS 45.0%
TCTTTGGCGAAAAGATGAGG+GGG - Chr1:17000814-17000833 None:intergenic 45.0%
TGATCTTTCAGCCATCTTGC+AGG - Chr1:16998004-16998023 None:intergenic 45.0%
TGCAAAGACTGTGTGTGCAT+TGG - Chr1:17000689-17000708 None:intergenic 45.0%
TGCAATTAGATGGCTAGAGG+CGG + Chr1:16997236-16997255 MsG0180001189.01.T01:intron 45.0%
TGCCATCTGCGTTTCAGATT+CGG + Chr1:16998674-16998693 MsG0180001189.01.T01:CDS 45.0%
TGCTGCAATTAGATGGCTAG+AGG + Chr1:16997233-16997252 MsG0180001189.01.T01:intron 45.0%
TGTTCCGGAAGTGATCTAGA+CGG + Chr1:16999752-16999771 MsG0180001189.01.T01:CDS 45.0%
TTCAAAACACGAACATCGCC+CGG - Chr1:16999273-16999292 None:intergenic 45.0%
TTCATTTGTCGACGAGGAGT+TGG + Chr1:16998210-16998229 MsG0180001189.01.T01:CDS 45.0%
TTGTCGTCAATGTCAACGTC+AGG - Chr1:16995926-16995945 None:intergenic 45.0%
TTGTGTTCGATGTCTGTGTC+AGG + Chr1:17000323-17000342 MsG0180001189.01.T01:intron 45.0%
! CAAGGTATTTCAACTGAGGG+TGG + Chr1:17000913-17000932 MsG0180001189.01.T01:CDS 45.0%
! GCTAGACTTGGGCAATCTTT+TGG + Chr1:16998490-16998509 MsG0180001189.01.T01:CDS 45.0%
! TACCGAATCTGAAACGCAGA+TGG - Chr1:16998679-16998698 None:intergenic 45.0%
! TCAGGCTTTTCCATGAAGTC+TGG - Chr1:17000841-17000860 None:intergenic 45.0%
! TCCATCGAGCCTTGTGAAAT+AGG + Chr1:16996973-16996992 MsG0180001189.01.T01:intron 45.0%
! TCGGTCACCGACTATATCTT+TGG + Chr1:16998057-16998076 MsG0180001189.01.T01:CDS 45.0%
! TCTGCGTTTCAGATTCGGTA+TGG + Chr1:16998679-16998698 MsG0180001189.01.T01:CDS 45.0%
!! ACATTTTTCAGCCACTCTCC+TGG - Chr1:16998641-16998660 None:intergenic 45.0%
!! TAGAAGAATGCCGTTGGCTT+TGG - Chr1:16996414-16996433 None:intergenic 45.0%
!!! TGTTCGTGTTTTGAAAGCCG+TGG + Chr1:16999278-16999297 MsG0180001189.01.T01:CDS 45.0%
!!! AACAAAATTTAAAATAAAAA+AGG - Chr1:16996716-16996735 None:intergenic 5.0%
AAAAATCCCTGCTTGCACCC+GGG + Chr1:16999252-16999271 MsG0180001189.01.T01:CDS 50.0%
AACTCCTCGCCTCTTTCCTT+AGG - Chr1:17001188-17001207 None:intergenic 50.0%
ACATGGCTTAATGGTGCAGG+AGG + Chr1:17000612-17000631 MsG0180001189.01.T01:intron 50.0%
ACTCCTCGCCTCTTTCCTTA+GGG - Chr1:17001187-17001206 None:intergenic 50.0%
CAATCCGGATGTTGTTCCCA+TGG + Chr1:16997784-16997803 MsG0180001189.01.T01:CDS 50.0%
CAGTGACAACTTCACAGACG+AGG - Chr1:16998737-16998756 None:intergenic 50.0%
CCACATCCAAACGAGTGTTC+CGG + Chr1:16999737-16999756 MsG0180001189.01.T01:CDS 50.0%
CCATGTTTAACCTTCGCGTC+AGG - Chr1:16998565-16998584 None:intergenic 50.0%
CCTGACGCGAAGGTTAAACA+TGG + Chr1:16998562-16998581 MsG0180001189.01.T01:CDS 50.0%
CGTCTGTGAAGTTGTCACTG+AGG + Chr1:16998737-16998756 MsG0180001189.01.T01:CDS 50.0%
GAAAAATCCCTGCTTGCACC+CGG + Chr1:16999251-16999270 MsG0180001189.01.T01:CDS 50.0%
GACAACTTCACAGACGAGGT+TGG - Chr1:16998733-16998752 None:intergenic 50.0%
GACTGCCCAATACAACTGCA+AGG - Chr1:16997644-16997663 None:intergenic 50.0%
GCAACCATGGGAACAACATC+CGG - Chr1:16997791-16997810 None:intergenic 50.0%
GCACGGATCCATTGCTTATC+AGG - Chr1:16997608-16997627 None:intergenic 50.0%
GGATGCGGATGCGATTACTA+TGG + Chr1:17001152-17001171 MsG0180001189.01.T01:CDS 50.0%
GGCTCAGACATTGCTTTAGC+AGG - Chr1:17000721-17000740 None:intergenic 50.0%
GGGTATAACTGCTGGGATAC+CGG - Chr1:17000794-17000813 None:intergenic 50.0%
GTGGGGCTGATGTAGATTCT+GGG + Chr1:17001220-17001239 MsG0180001189.01.T01:CDS 50.0%
GTTCCGGAAGTGATCTAGAC+GGG + Chr1:16999753-16999772 MsG0180001189.01.T01:CDS 50.0%
TAAGGAAAGAGGCGAGGAGT+TGG + Chr1:17001187-17001206 MsG0180001189.01.T01:CDS 50.0%
TCAAAACACGAACATCGCCC+GGG - Chr1:16999272-16999291 None:intergenic 50.0%
TCACTTCCGGAACACTCGTT+TGG - Chr1:16999746-16999765 None:intergenic 50.0%
TCGACAGACCTTGAGGAATC+CGG - Chr1:16995970-16995989 None:intergenic 50.0%
TCTCTTTCCCGGATTCCTCA+AGG + Chr1:16995959-16995978 MsG0180001189.01.T01:five_prime_UTR 50.0%
TCTTGAACTTGCCAGGAGAG+TGG + Chr1:16998627-16998646 MsG0180001189.01.T01:CDS 50.0%
TGTGAGGTCCCTAAGGAAAG+AGG + Chr1:17001176-17001195 MsG0180001189.01.T01:CDS 50.0%
TGTTTGCTCGTGCAACAACC+GGG + Chr1:16998398-16998417 MsG0180001189.01.T01:CDS 50.0%
TTCCGGAAGTGATCTAGACG+GGG + Chr1:16999754-16999773 MsG0180001189.01.T01:CDS 50.0%
! AGATGAGGGGGTATAACTGC+TGG - Chr1:17000802-17000821 None:intergenic 50.0%
! CGTTTCAGATTCGGTATGGC+GGG + Chr1:16998683-16998702 MsG0180001189.01.T01:CDS 50.0%
! GATGAGGGGGTATAACTGCT+GGG - Chr1:17000801-17000820 None:intergenic 50.0%
! GCGTTTCAGATTCGGTATGG+CGG + Chr1:16998682-16998701 MsG0180001189.01.T01:CDS 50.0%
!! ACGGGTTGGTATATGTTCGC+AGG + Chr1:16998083-16998102 MsG0180001189.01.T01:CDS 50.0%
!! ATCAGCATCGACAGACCTTG+AGG - Chr1:16995977-16995996 None:intergenic 50.0%
!! ATTCGGTATGGCGGGTACAA+AGG + Chr1:16998691-16998710 MsG0180001189.01.T01:CDS 50.0%
!! ATTTGGGTTGGCCTATGCAG+TGG - Chr1:16997214-16997233 None:intergenic 50.0%
!! CGGGTTGGTATATGTTCGCA+GGG + Chr1:16998084-16998103 MsG0180001189.01.T01:CDS 50.0%
!! CTGCCGATTCCATAAGGGAA+TGG + Chr1:16998425-16998444 MsG0180001189.01.T01:CDS 50.0%
!! GAGGCGGATTATTTGCACTG+AGG - Chr1:16998039-16998058 None:intergenic 50.0%
!! GCTCACTGCCGATTCCATAA+GGG + Chr1:16998420-16998439 MsG0180001189.01.T01:CDS 50.0%
!!! ACTGCTGGGATACCGGTTTT+TGG - Chr1:17000787-17000806 None:intergenic 50.0%
AAGACAGCCGTGCTGAACCA+AGG - Chr1:16997864-16997883 None:intergenic 55.0%
ACACTCGTTTGGATGTGGCC+TGG - Chr1:16999735-16999754 None:intergenic 55.0%
ACCTAGGAGCTGCACTCTTG+TGG - Chr1:16997123-16997142 None:intergenic 55.0%
CCGGAACACTCGTTTGGATG+TGG - Chr1:16999740-16999759 None:intergenic 55.0%
CCTTGAGGAGGAGCAACCAT+GGG - Chr1:16997803-16997822 None:intergenic 55.0%
CGACAGACCTTGAGGAATCC+GGG - Chr1:16995969-16995988 None:intergenic 55.0%
CTATGGCTGTGAGGTCCCTA+AGG + Chr1:17001169-17001188 MsG0180001189.01.T01:CDS 55.0%
CTTAATGGTGCAGGAGGTGG+AGG + Chr1:17000618-17000637 MsG0180001189.01.T01:intron 55.0%
GATATAGTCGGTGACCGAGG+CGG - Chr1:16998055-16998074 None:intergenic 55.0%
GGTGGGGCTGATGTAGATTC+TGG + Chr1:17001219-17001238 MsG0180001189.01.T01:CDS 55.0%
GTCCCCGTCTAGATCACTTC+CGG - Chr1:16999759-16999778 None:intergenic 55.0%
GTTCAGCACGGCTGTCTTTC+AGG + Chr1:16997866-16997885 MsG0180001189.01.T01:CDS 55.0%
TATGGAATCGGCAGTGAGCC+CGG - Chr1:16998419-16998438 None:intergenic 55.0%
TCCTTGAGGAGGAGCAACCA+TGG - Chr1:16997804-16997823 None:intergenic 55.0%
TGGCTTAATGGTGCAGGAGG+TGG + Chr1:17000615-17000634 MsG0180001189.01.T01:intron 55.0%
! AGAGGCGAGGAGTTGGTTCA+AGG + Chr1:17001194-17001213 MsG0180001189.01.T01:CDS 55.0%
! AGGAGTTGGTTCAAGGACGG+TGG + Chr1:17001201-17001220 MsG0180001189.01.T01:CDS 55.0%
! CGCATCCGCATCCCTTCTTT+TGG - Chr1:17001145-17001164 None:intergenic 55.0%
! GAGTTGGTTCAAGGACGGTG+GGG + Chr1:17001203-17001222 MsG0180001189.01.T01:CDS 55.0%
! GCGAGGAGTTGGTTCAAGGA+CGG + Chr1:17001198-17001217 MsG0180001189.01.T01:CDS 55.0%
! GGAGTTGGTTCAAGGACGGT+GGG + Chr1:17001202-17001221 MsG0180001189.01.T01:CDS 55.0%
! TCCACAAGAGTGCAGCTCCT+AGG + Chr1:16997119-16997138 MsG0180001189.01.T01:intron 55.0%
!! GGCTCACTGCCGATTCCATA+AGG + Chr1:16998419-16998438 MsG0180001189.01.T01:CDS 55.0%
ATGGCTAGAGGCGGACCACA+AGG + Chr1:16997245-16997264 MsG0180001189.01.T01:intron 60.0%
CAGGCACGGTCACACGATGA+GGG - Chr1:16996137-16996156 None:intergenic 60.0%
CCCATGGTTGCTCCTCCTCA+AGG + Chr1:16997800-16997819 MsG0180001189.01.T01:CDS 60.0%
GCGCAAAGCTGGCACATCCA+CGG - Chr1:16999298-16999317 None:intergenic 60.0%
GGTCCCTAAGGAAAGAGGCG+AGG + Chr1:17001181-17001200 MsG0180001189.01.T01:CDS 60.0%
TCAGGCACGGTCACACGATG+AGG - Chr1:16996138-16996157 None:intergenic 60.0%
TCCACCATGTGGCGCAAAGC+TGG - Chr1:16999309-16999328 None:intergenic 60.0%
TGTGCCAGCTTTGCGCCACA+TGG + Chr1:16999302-16999321 MsG0180001189.01.T01:CDS 60.0%
! TGGCGGGTACAAAGGAGTCG+TGG + Chr1:16998699-16998718 MsG0180001189.01.T01:CDS 60.0%
AACATCGCCCGGGTGCAAGC+AGG - Chr1:16999262-16999281 None:intergenic 65.0%
ACATCGCCCGGGTGCAAGCA+GGG - Chr1:16999261-16999280 None:intergenic 65.0%
GCCAGCTTTGCGCCACATGG+TGG + Chr1:16999305-16999324 MsG0180001189.01.T01:CDS 65.0%
AGTCTCCGCAACCGCGCACG+CGG - Chr1:16996951-16996970 None:intergenic 70.0%
ATCCTCCGCGTGCGCGGTTG+CGG + Chr1:16996943-16996962 MsG0180001189.01.T01:intron 70.0%
CCGCGCACGCGGAGGATACC+CGG - Chr1:16996940-16996959 None:intergenic 75.0%
CCGGGTATCCTCCGCGTGCG+CGG + Chr1:16996937-16996956 MsG0180001189.01.T01:intron 75.0%
! CTCCGCAACCGCGCACGCGG+AGG - Chr1:16996948-16996967 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 16995828 17001682 16995828 ID=MsG0180001189.01;Name=MsG0180001189.01
Chr1 mRNA 16995828 17001682 16995828 ID=MsG0180001189.01.T01;Parent=MsG0180001189.01;Name=MsG0180001189.01.T01;_AED=0.48;_eAED=0.48;_QI=139|1|1|1|0.4|0.33|6|224|1129
Chr1 exon 16995828 16995896 16995828 ID=MsG0180001189.01.T01:exon:31584;Parent=MsG0180001189.01.T01
Chr1 exon 16995937 16995980 16995937 ID=MsG0180001189.01.T01:exon:31585;Parent=MsG0180001189.01.T01
Chr1 exon 16996073 16996665 16996073 ID=MsG0180001189.01.T01:exon:31586;Parent=MsG0180001189.01.T01
Chr1 exon 16997515 16999358 16997515 ID=MsG0180001189.01.T01:exon:31587;Parent=MsG0180001189.01.T01
Chr1 exon 16999736 16999886 16999736 ID=MsG0180001189.01.T01:exon:31588;Parent=MsG0180001189.01.T01
Chr1 exon 17000631 17001682 17000631 ID=MsG0180001189.01.T01:exon:31589;Parent=MsG0180001189.01.T01
Chr1 five_prime_UTR 16995828 16995896 16995828 ID=MsG0180001189.01.T01:five_prime_utr;Parent=MsG0180001189.01.T01
Chr1 five_prime_UTR 16995937 16995980 16995937 ID=MsG0180001189.01.T01:five_prime_utr;Parent=MsG0180001189.01.T01
Chr1 five_prime_UTR 16996073 16996098 16996073 ID=MsG0180001189.01.T01:five_prime_utr;Parent=MsG0180001189.01.T01
Chr1 CDS 16996099 16996665 16996099 ID=MsG0180001189.01.T01:cds;Parent=MsG0180001189.01.T01
Chr1 CDS 16997515 16999358 16997515 ID=MsG0180001189.01.T01:cds;Parent=MsG0180001189.01.T01
Chr1 CDS 16999736 16999886 16999736 ID=MsG0180001189.01.T01:cds;Parent=MsG0180001189.01.T01
Chr1 CDS 17000631 17001458 17000631 ID=MsG0180001189.01.T01:cds;Parent=MsG0180001189.01.T01
Chr1 three_prime_UTR 17001459 17001682 17001459 ID=MsG0180001189.01.T01:three_prime_utr;Parent=MsG0180001189.01.T01
Gene Sequence

>MsG0180001189.01.T01

ATGGTTAAAAGTAAAACAATTAAGTTGCATGGATTCCCTCATCGTGTGACCGTGCCTGATGTAAAGACATTTGTAGAGCAGTATACTGGTGAAGAAAGTGTGGTTGCTATAAAAATAAGGAAGTGTAGTTGCTATAAAAATAAGTGTTGTTGCTATAAAAAGAAGAGATTTGTTCAAATTCGAACGGCGTTTGCAATTATTCAATTCACCACTACAGATCATGCTACATATATGATGGCCTTACGTAGCGGAAAAAAATTGCAGTTCGGGAAATCCTATTTAAAAGTTACGAAAATGGAAAGAGATATTGATCCAAAGCCAACGGCATTCTTCTACAGATTAGACGATGTTAAACTGTATTTTGGCTGTCAGATCTCAAAGGAAAGATTCTCTGTATTATGGGGAAAGATGGATGCTAGTGTAGATTTTGGGATTGGATTGAGAAAGTGGCGATTCTCTATGTGCCATGACGATAAGAAGTTCAAACTTGAGCTTTCATATGAGAATATTTGGAAGATTGAACTGCATCAACCATGGTTTAAAACTGCAAAGTATCTATTGATTCAGTTAATTGGTGCTCCTCGTGTTTTTGAGCTTAATGTTCCTACATCAACAAGTGTATCTAAAGATCCTCTGAAGAACTATTACAGAGATTCCCCTGATAAGCAATGGATCCGTGCGATAGACTTCACTCCTTGCAGTTGTATTGGGCAGTCTTCCGCTATATGTCTAAAGATTCCTAGTAACAGAGATTTTCCGAATTTCAGGGAAAACTTTGTTCATTATGAGGAAATCGAGGGTCAATACACATTGGAGAGAGGATCACCTTTTTCTTGCAATCCGGATGTTGTTCCCATGGTTGCTCCTCCTCAAGGAATTCAAATACCATTTCACATCTTGTTTAAAGTTAATTCCTTGGTTCAGCACGGCTGTCTTTCAGGTTCTGAACTTGATAATGCTTTCTATCGTCTAGTTGATCCACTCAGAATAAAGGTTGAGTTTATCGAGCATGCTTTAGAAAAGTTGTACTATTCAAAGGATTTCTGTTATGAACCTGCAAGATGGCTGAAAGATCAGTACAGAATGTACCTCAGTGCAAATAATCCGCCTCGGTCACCGACTATATCTTTGGATAACGGGTTGGTATATGTTCGCAGGGTTCAAATAACACCATGCAAAGTATACTTTTGTGGTCCAGAGATTAATGTCTCAAATCGGGTCCTCCGTCATTTCCATCAACATATTGATAATTTTCTACGTGTTTCATTTGTCGACGAGGAGTTGGATAATATGTACTCAGCCAATTTATCTTCACGTATTTCTGAGAATGGGAGAACTGAGATATACTATAGAATTCTTTCCATCCTTAGAAATGGCATAGATATTGGTGGTATGAAGTTTGAATTTCTAGCTTTCTCATCAAGTCAGTTGCGTGAAAACTCGCTATGGATGTTTGCTCGTGCAACAACCGGGCTCACTGCCGATTCCATAAGGGAATGGATGGGAGATTTTAGCCATATAAAAAATGTGGCTAAATATGCTGCTAGACTTGGGCAATCTTTTGGTTCGTCTACCGAAACTCTAAGCGTCAAAAGGAACGAAATTGAAATTATTCCTGACGCGAAGGTTAAACATGGTGCAACCGAATATGTCTTCTCTGATGGAATCGGAAAAATATCTCTTGAACTTGCCAGGAGAGTGGCTGAAAAATGTGGTCATGATTCAATGCCATCTGCGTTTCAGATTCGGTATGGCGGGTACAAAGGAGTCGTGGCTGTTGATCCAACCTCGTCTGTGAAGTTGTCACTGAGGAAGAGTATGCACAAGTATGATTCAGATAACATAAAATTGGATGTTCTGGAATGTAGTAAGTTTCAGCCTTGTTATCTCAATCGACAATTGATTACTCTCTTATCTACTCTTGATGTCAAGGACAGTGTTTTTGAGAAAAAACAAAAAGAAGCTGTTACTCAACTGAACACGATACTAACAGATTCAACTAAGGCACATGAGGTTTTGGACTTGATGTGTTCCGGTGAAGTCACTAATATTCTCAAGGAGATGCTTATCTGTGGCTACAAGCCTAATGTTGAGCCATTTCTTTCAATGATGCTGCAGACATTTAGGGCATCAAAGTTGTTGGAATTGCGACAAAAAACTAGGATATTTATTACAAAAGGAAGAGCAATGATGGGAGTTCTAGATGAAACTAGAACCTTAGAATATGGGGAAGTTTTTGTTCAATATTCTACCAATAGGTTCAGCAGTCATTCTCGTGTAGTTAAGGGTATGGTAGTAGTAGCGAAAAATCCCTGCTTGCACCCGGGCGATGTTCGTGTTTTGAAAGCCGTGGATGTGCCAGCTTTGCGCCACATGGTGGATTGTGTTGTTTTTCCTCAAAAAGGTCACAGGCCACATCCAAACGAGTGTTCCGGAAGTGATCTAGACGGGGACATCTACTTTGTTTGTTGGGATTCTGAATTGATTCCACCCATGACAATTGATCCAATGGAGTATGATTCTTCCCAACCTATTGTATTGGATCATGATGTTGAGATTGAGGAGGTGGAGGAGTATTTCACCAATTATATACTCAATGACAGTCTTGGAATAATTTCCAATGCACACACAGTCTTTGCAGATAAAGAACCTGCTAAAGCAATGTCTGAGCCATGTATTGAACTTGCAAAGCTATCCTCAATAGCAGTTGATTTTCCAAAAACCGGTATCCCAGCAGTTATACCCCCTCATCTTTTCGCCAAAGAATATCCAGACTTCATGGAAAAGCCTGACAAAACCACCTATAAATCAAAGAATGTAATAGGAAAACTTTTTAGGGAAATTCAAGGTATTTCAACTGAGGGTGGTTCTATTACATCCTTCACACTTGAAGTGGCTAAGGAGTCATATGATTCGGATATGGAATTCGAGGGCTTTATGGATTATGTCGACGATGCTTTCTATCACAAAACCAATTATGACTACAAGTTGGGAAATCTGATGGACTACTATGGTATCAAAACTGAATCAGAAATCCTAAGTGGGAATATTATGAAAATGTCGAAATATTTCACCAAAAGAAGGGATGCGGATGCGATTACTATGGCTGTGAGGTCCCTAAGGAAAGAGGCGAGGAGTTGGTTCAAGGACGGTGGGGCTGATGTAGATTCTGGGAGTGATGATGTATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCATAGTTACTATGGTTTGTACAATGAAGGTATGAAAAGGGACCATTTTCTAAGCTTTCCATGGTGTGTTTACCATTTGCTGGTCCAAATCAAGAAGGAGAAAGCCATGATGAGGATGCATTCTAGCATGGAACAAAGTTTCAGTTCTGGGTTGCGTCTTGATTGA
Protein sequence

>MsG0180001189.01.T01

MVKSKTIKLHGFPHRVTVPDVKTFVEQYTGEESVVAIKIRKCSCYKNKCCCYKKKRFVQIRTAFAIIQFTTTDHATYMMALRSGKKLQFGKSYLKVTKMERDIDPKPTAFFYRLDDVKLYFGCQISKERFSVLWGKMDASVDFGIGLRKWRFSMCHDDKKFKLELSYENIWKIELHQPWFKTAKYLLIQLIGAPRVFELNVPTSTSVSKDPLKNYYRDSPDKQWIRAIDFTPCSCIGQSSAICLKIPSNRDFPNFRENFVHYEEIEGQYTLERGSPFSCNPDVVPMVAPPQGIQIPFHILFKVNSLVQHGCLSGSELDNAFYRLVDPLRIKVEFIEHALEKLYYSKDFCYEPARWLKDQYRMYLSANNPPRSPTISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSANLSSRISENGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARATTGLTADSIREWMGDFSHIKNVAKYAARLGQSFGSSTETLSVKRNEIEIIPDAKVKHGATEYVFSDGIGKISLELARRVAEKCGHDSMPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLDVLECSKFQPCYLNRQLITLLSTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDLMCSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFITKGRAMMGVLDETRTLEYGEVFVQYSTNRFSSHSRVVKGMVVVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPMTIDPMEYDSSQPIVLDHDVEIEEVEEYFTNYILNDSLGIISNAHTVFADKEPAKAMSEPCIELAKLSSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSKNVIGKLFREIQGISTEGGSITSFTLEVAKESYDSDMEFEGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTESEILSGNIMKMSKYFTKRRDADAITMAVRSLRKEARSWFKDGGADVDSGSDDVYAKASAWYYVTYHHSYYGLYNEGMKRDHFLSFPWCVYHLLVQIKKEKAMMRMHSSMEQSFSSGLRLD*