AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001186.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001186.01.T01 MTR_1g032630 69.388 441 98 3 249 659 681 1114 0.0 602
MsG0180001186.01.T01 MTR_1g032630 67.683 164 35 2 1 147 1 163 4.85e-58 212
MsG0180001186.01.T01 MTR_1g032630 74.138 116 26 2 132 245 278 391 1.93e-48 184
MsG0180001186.01.T01 MTR_1g032630 82.051 78 14 0 248 325 493 570 5.19e-29 124
MsG0180001186.01.T01 MTR_1g032610 68.481 441 102 4 249 659 684 1117 0.0 595
MsG0180001186.01.T01 MTR_1g032610 63.855 166 41 2 1 147 1 166 4.15e-56 206
MsG0180001186.01.T01 MTR_1g032610 66.129 124 38 2 132 253 284 405 7.71e-46 176
MsG0180001186.01.T01 MTR_1g032610 65.385 78 24 1 248 325 499 573 5.02e-14 76.3
MsG0180001186.01.T01 MTR_1g032610 68.481 441 102 4 249 659 621 1054 0.0 595
MsG0180001186.01.T01 MTR_1g032610 77.670 103 23 0 151 253 240 342 9.21e-46 175
MsG0180001186.01.T01 MTR_1g032610 66.019 103 33 1 47 147 1 103 1.91e-35 144
MsG0180001186.01.T01 MTR_1g032610 65.385 78 24 1 248 325 436 510 4.63e-14 76.3
MsG0180001186.01.T01 MTR_1g032710 69.841 441 96 3 249 659 121 554 0.0 585
MsG0180001186.01.T01 MTR_1g032720 78.431 357 47 1 333 659 1370 1726 0.0 572
MsG0180001186.01.T01 MTR_1g032720 62.275 167 42 4 1 147 1 166 4.07e-50 189
MsG0180001186.01.T01 MTR_1g032720 62.275 167 42 4 1 147 610 775 4.07e-50 189
MsG0180001186.01.T01 MTR_1g032720 57.616 151 40 2 151 277 300 450 1.58e-42 166
MsG0180001186.01.T01 MTR_1g032720 57.616 151 40 2 151 277 909 1059 1.58e-42 166
MsG0180001186.01.T01 MTR_1g032720 75.641 78 19 0 248 325 496 573 2.04e-25 113
MsG0180001186.01.T01 MTR_1g032720 90.323 62 6 0 248 309 1105 1166 3.10e-25 112
MsG0180001186.01.T01 MTR_1g032590 53.602 347 127 3 333 645 761 1107 9.32e-117 376
MsG0180001186.01.T01 MTR_1g032590 48.333 120 58 2 132 249 267 384 7.72e-26 114
MsG0180001186.01.T01 MTR_1g032590 34.177 158 88 1 5 146 3 160 1.35e-21 100
MsG0180001186.01.T01 MTR_1g032590 72.581 62 17 0 248 309 484 545 2.13e-18 90.5
MsG0180001186.01.T01 MTR_4g106660 39.420 345 161 8 333 640 786 1119 1.08e-67 240
MsG0180001186.01.T01 MTR_4g106660 39.589 341 158 8 333 636 786 1115 3.62e-67 239
MsG0180001186.01.T01 MTR_1g032630 67.683 164 35 2 1 147 1 163 5.45e-59 212
MsG0180001186.01.T01 MTR_1g032630 74.138 116 26 2 132 245 278 391 5.53e-49 184
MsG0180001186.01.T01 MTR_1g032630 82.051 78 14 0 248 325 493 570 4.61e-29 124
MsG0180001186.01.T01 MTR_3g107390 31.591 421 224 7 281 650 784 1191 9.52e-54 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001186.01.T01 AT1G14790 59.831 356 108 2 333 658 756 1106 2.17e-131 414
MsG0180001186.01.T01 AT1G14790 39.623 159 80 1 5 147 3 161 8.99e-31 129
MsG0180001186.01.T01 AT1G14790 45.968 124 63 2 132 253 276 397 4.36e-27 118
MsG0180001186.01.T01 AT1G14790 67.742 62 20 0 248 309 490 551 1.10e-17 88.2
MsG0180001186.01.T01 AT4G11130 38.719 359 170 10 333 656 787 1130 2.69e-60 219
MsG0180001186.01.T01 AT4G11130 41.975 81 47 0 245 325 506 586 4.65e-12 70.1
MsG0180001186.01.T01 AT3G49500 35.655 359 186 8 323 636 812 1170 6.66e-50 188
MsG0180001186.01.T01 AT3G49500 35.655 359 186 8 323 636 812 1170 6.66e-50 188
MsG0180001186.01.T01 AT3G49500 35.655 359 186 8 323 636 812 1170 6.66e-50 188
MsG0180001186.01.T01 AT3G49500 35.655 359 186 8 323 636 812 1170 6.66e-50 188
MsG0180001186.01.T01 AT3G49500 35.655 359 186 8 323 636 812 1170 6.66e-50 188

Find 146 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGATGTTAAATTGTATTT+TGG 0.150856 1:+16963635 MsG0180001186.01.T01:CDS
AGCTTTCATATGAGAATATT+TGG 0.191630 1:+16963783 MsG0180001186.01.T01:CDS
ATGGATGCTAGTGCAGATTT+TGG 0.192772 1:+16963701 MsG0180001186.01.T01:CDS
TATGGAATTCGAGGGCTTTA+TGG 0.210906 1:+16967653 MsG0180001186.01.T01:CDS
TCCCAACTTGTAGTCATAAT+TGG 0.235213 1:-16967706 None:intergenic
TGGCTTTCTCCTTCTTGATT+TGG 0.249778 1:-16968043 None:intergenic
CTATTTAAAAGTTACGAAAA+TGG 0.261211 1:+16963568 MsG0180001186.01.T01:CDS
CGCATCCGCATCCCTTCTTT+TGG 0.261948 1:-16967808 None:intergenic
GCTAGACTTGGGCAATCTTT+TGG 0.280000 1:+16965397 MsG0180001186.01.T01:CDS
ACTTACCATCATAGTTACTA+TGG 0.312137 1:+16967951 MsG0180001186.01.T01:CDS
TATAAATCAAAGAATGTAAT+AGG 0.313545 1:+16967538 MsG0180001186.01.T01:intron
TGATCTTTCAGCCATCTTGC+AGG 0.323580 1:-16965059 None:intergenic
GGGACATCTACTTTGTTTGT+TGG 0.336396 1:+16966445 MsG0180001186.01.T01:CDS
ATGGTGTGTTTACCATTTGC+TGG 0.336747 1:+16968019 MsG0180001186.01.T01:CDS
TAGAAGAATGCCGTTGGCTT+TGG 0.337561 1:-16963605 None:intergenic
TTCTTCCCAACCTATTGTAT+TGG 0.346101 1:+16966515 MsG0180001186.01.T01:CDS
GGTGGGGCTGATGTAGATTC+TGG 0.358182 1:+16967885 MsG0180001186.01.T01:CDS
CGACTATATCTTTGGATAAC+GGG 0.374346 1:+16965123 MsG0180001186.01.T01:CDS
TCGGTCACCGACTATATCTT+TGG 0.382147 1:+16965115 MsG0180001186.01.T01:CDS
TGCCATCTGCGTTTCAGATT+CGG 0.383162 1:+16965580 MsG0180001186.01.T01:CDS
ACTGTCATTGAGTATATAAT+TGG 0.384132 1:-16967317 None:intergenic
AACTCCTCGCCTCTTTCCTT+AGG 0.391172 1:-16967851 None:intergenic
TGGAACAAAGTTTCAGTTCT+GGG 0.391973 1:+16968087 MsG0180001186.01.T01:CDS
GGACATCTACTTTGTTTGTT+GGG 0.393937 1:+16966446 MsG0180001186.01.T01:CDS
TCACTTCCGGAACACTCGTT+TGG 0.395235 1:-16966414 None:intergenic
TGGAAAATCAACTGCTATTG+AGG 0.398393 1:-16967431 None:intergenic
GCTAAATATGCTGCTAGACT+TGG 0.420071 1:+16965385 MsG0180001186.01.T01:CDS
TCCATCAGAGAAGACATATT+CGG 0.427902 1:-16965497 None:intergenic
ACCATGGAAAGCTTAGAAAA+TGG 0.431302 1:-16968001 None:intergenic
ACATCATGATCCAATACAAT+AGG 0.434504 1:-16966525 None:intergenic
CAGAGATTAATGTCTCAAAT+CGG 0.436411 1:+16965201 MsG0180001186.01.T01:CDS
ACCAATTATGACTACAAGTT+GGG 0.440195 1:+16967705 MsG0180001186.01.T01:CDS
CCGACTATATCTTTGGATAA+CGG 0.440826 1:+16965122 MsG0180001186.01.T01:CDS
CCATGTTTAACCTTCGCGTC+AGG 0.441759 1:-16965469 None:intergenic
AGTTGATCCACTCAGAATAA+AGG 0.443637 1:+16964977 MsG0180001186.01.T01:CDS
CGAAATATTTCACCAAAAGA+AGG 0.444980 1:+16967796 MsG0180001186.01.T01:CDS
GTCCCCGTCTAGATCACTTC+CGG 0.446184 1:-16966427 None:intergenic
GGCTCAGACATTGCTTTAGC+AGG 0.447457 1:-16967385 None:intergenic
GGAGTCATATGATTCGGATA+TGG 0.447757 1:+16967635 MsG0180001186.01.T01:CDS
ATGGAACAAAGTTTCAGTTC+TGG 0.452484 1:+16968086 MsG0180001186.01.T01:CDS
TCCACCATGTGGCGCAAAGC+TGG 0.452967 1:-16965981 None:intergenic
CTCTGTATTGTGGGGAAAGA+TGG 0.454381 1:+16963682 MsG0180001186.01.T01:CDS
TGTACAATGAAGGTATGAAA+AGG 0.454846 1:+16967976 MsG0180001186.01.T01:CDS
TTGGGATTGGATTGAGAAAG+TGG 0.455481 1:+16963720 MsG0180001186.01.T01:CDS
ACATTTGTAGAGCAGTATAC+TGG 0.461229 1:+16963360 MsG0180001186.01.T01:CDS
GGATGCGGATGCGATTACTA+TGG 0.463056 1:+16967818 MsG0180001186.01.T01:CDS
GGCTAAGGAGTCATATGATT+CGG 0.463518 1:+16967629 MsG0180001186.01.T01:CDS
TCTTGATTTGGACCAGCAAA+TGG 0.465226 1:-16968031 None:intergenic
GGAAAGATTCTCTGTATTGT+GGG 0.467936 1:+16963673 MsG0180001186.01.T01:CDS
TATGTCTTCTCTGATGGAAT+CGG 0.469620 1:+16965502 MsG0180001186.01.T01:CDS
AACATCGCCCGGGTGCAAGC+AGG 0.470194 1:-16965935 None:intergenic
TACTATGGTTTGTACAATGA+AGG 0.470404 1:+16967966 MsG0180001186.01.T01:CDS
AACCAATTATGACTACAAGT+TGG 0.472437 1:+16967704 MsG0180001186.01.T01:CDS
ACTCCTCGCCTCTTTCCTTA+GGG 0.475778 1:-16967850 None:intergenic
CCGGAACACTCGTTTGGATG+TGG 0.476825 1:-16966408 None:intergenic
AAATATCTCTTGAACTTGCC+AGG 0.478082 1:+16965527 MsG0180001186.01.T01:CDS
TCTACAAATGTCTTTACATC+AGG 0.480962 1:-16963348 None:intergenic
AGAAAAGTTGTACTATTCAA+AGG 0.481118 1:+16965022 MsG0180001186.01.T01:CDS
GGAAATCTGATGGACTACTA+TGG 0.482352 1:+16967726 MsG0180001186.01.T01:CDS
GTGGGGCTGATGTAGATTCT+GGG 0.483416 1:+16967886 MsG0180001186.01.T01:CDS
AGTAAAACAATTAAGTTGCA+TGG 0.485965 1:+16963303 MsG0180001186.01.T01:CDS
CCGAAACTCTAAGCGTCAAA+AGG 0.488524 1:+16965428 MsG0180001186.01.T01:CDS
ACGGGTTGGTATATGTTCGC+AGG 0.489662 1:+16965141 MsG0180001186.01.T01:CDS
CCACATCCAAACGAGTGTTC+CGG 0.490224 1:+16966408 MsG0180001186.01.T01:CDS
ATGATCCAATACAATAGGTT+GGG 0.494319 1:-16966520 None:intergenic
ACCGAATATGTCTTCTCTGA+TGG 0.497328 1:+16965496 MsG0180001186.01.T01:CDS
TATATACTCAATGACAGTCT+TGG 0.498477 1:+16967322 MsG0180001186.01.T01:CDS
CTTAATGGTGCAGGAGGTGG+AGG 0.506487 1:+16967285 MsG0180001186.01.T01:intron
AGGAAAGATTCTCTGTATTG+TGG 0.507749 1:+16963672 MsG0180001186.01.T01:CDS
GGAGTTGGTTCAAGGACGGT+GGG 0.515916 1:+16967868 MsG0180001186.01.T01:CDS
CTCCATTGGATCAATTGTCA+TGG 0.517675 1:-16966487 None:intergenic
CGATTTGAGACATTAATCTC+TGG 0.518772 1:-16965200 None:intergenic
TTTCAAAACACAACATCGCC+CGG 0.519925 1:-16965946 None:intergenic
AGGAGTTGGTTCAAGGACGG+TGG 0.520986 1:+16967867 MsG0180001186.01.T01:CDS
GTACAATGAAGGTATGAAAA+GGG 0.521264 1:+16967977 MsG0180001186.01.T01:CDS
AGAGATTAATGTCTCAAATC+GGG 0.524276 1:+16965202 MsG0180001186.01.T01:CDS
CTATGGCTGTGAGGTCCCTA+AGG 0.525069 1:+16967835 MsG0180001186.01.T01:CDS
GTTCCGGAAGTGATCTAGAC+GGG 0.525385 1:+16966424 MsG0180001186.01.T01:CDS
CTAAATATGCTGCTAGACTT+GGG 0.526193 1:+16965386 MsG0180001186.01.T01:CDS
TACATCCTTCACACTTGAAG+TGG 0.526578 1:+16967608 MsG0180001186.01.T01:CDS
CATGATCCAATACAATAGGT+TGG 0.528368 1:-16966521 None:intergenic
TGATTCGGATATGGAATTCG+AGG 0.528929 1:+16967644 MsG0180001186.01.T01:CDS
AGATCATGCTACATATATGA+TGG 0.530126 1:+16963508 MsG0180001186.01.T01:intron
CTTCACACTTGAAGTGGCTA+AGG 0.531272 1:+16967614 MsG0180001186.01.T01:CDS
GGATCATGATGTTGAGATTG+AGG 0.532865 1:+16966536 MsG0180001186.01.T01:CDS
AGAGGCGAGGAGTTGGTTCA+AGG 0.537281 1:+16967860 MsG0180001186.01.T01:CDS
ACCCATGACAATTGATCCAA+TGG 0.540648 1:+16966485 MsG0180001186.01.T01:CDS
AGCTTTGCAAGTTCAATACA+TGG 0.541886 1:-16967406 None:intergenic
CTACAAGTTGGGAAATCTGA+TGG 0.542458 1:+16967716 MsG0180001186.01.T01:CDS
GTTTGAACTTCTTATCGTCA+TGG 0.543349 1:-16963757 None:intergenic
TAAGGAAAGAGGCGAGGAGT+TGG 0.543723 1:+16967853 MsG0180001186.01.T01:CDS
TGCAAAGACTGTGTGTGCAT+TGG 0.543894 1:-16967353 None:intergenic
GCGCAAAGCTGGCACATCCA+CGG 0.545974 1:-16965970 None:intergenic
TATATCTTTGGATAACGGGT+TGG 0.546193 1:+16965127 MsG0180001186.01.T01:CDS
GCTAGAATGCATCCTCATCA+TGG 0.546595 1:-16968063 None:intergenic
CCACAAAAGTATACTTTGCA+TGG 0.555207 1:-16965176 None:intergenic
TGGGAAGAATCATACTCCAT+TGG 0.555316 1:-16966501 None:intergenic
ACATCGCCCGGGTGCAAGCA+GGG 0.556691 1:-16965934 None:intergenic
AACTCAACCTTTATTCTGAG+TGG 0.564774 1:-16964984 None:intergenic
TGAAATTATTCCTGACGCGA+AGG 0.567517 1:+16965459 MsG0180001186.01.T01:CDS
TCAGGCACGGTGACATGATG+AGG 0.567959 1:-16963330 None:intergenic
CAAGGTATTTCAACTGAGGG+TGG 0.570622 1:+16967579 MsG0180001186.01.T01:CDS
GAAATATTTCACCAAAAGAA+GGG 0.573777 1:+16967797 MsG0180001186.01.T01:CDS
CGGGTTGGTATATGTTCGCA+GGG 0.575499 1:+16965142 MsG0180001186.01.T01:CDS
ACAAACCATAGTAACTATGA+TGG 0.581319 1:-16967956 None:intergenic
ATTCAAGGTATTTCAACTGA+GGG 0.581387 1:+16967576 MsG0180001186.01.T01:CDS
ACTGAATCAGAAATCCTAAG+TGG 0.581610 1:+16967756 MsG0180001186.01.T01:CDS
TATATGCAAAAGCTTCTGCT+TGG 0.581961 1:+16967919 MsG0180001186.01.T01:CDS
TTTCACCAAAAGAAGGGATG+CGG 0.582713 1:+16967803 MsG0180001186.01.T01:CDS
TCTGTTATGAACCTGCAAGA+TGG 0.584270 1:+16965048 MsG0180001186.01.T01:CDS
GATTCGGATATGGAATTCGA+GGG 0.584692 1:+16967645 MsG0180001186.01.T01:CDS
TCCATTGGATCAATTGTCAT+GGG 0.585286 1:-16966486 None:intergenic
TGTGAGGTCCCTAAGGAAAG+AGG 0.585768 1:+16967842 MsG0180001186.01.T01:CDS
TGTGCCAGCTTTGCGCCACA+TGG 0.587567 1:+16965977 MsG0180001186.01.T01:CDS
CCGTTATCCAAAGATATAGT+CGG 0.588330 1:-16965122 None:intergenic
CTTAGCCACTTCAAGTGTGA+AGG 0.595199 1:-16967613 None:intergenic
TACCGAATCTGAAACGCAGA+TGG 0.597963 1:-16965582 None:intergenic
GATGAGGATGCATTCTAGCA+TGG 0.601811 1:+16968067 MsG0180001186.01.T01:CDS
ATTGGATCAATTGTCATGGG+TGG 0.613821 1:-16966483 None:intergenic
GCCAGCTTTGCGCCACATGG+TGG 0.616294 1:+16965980 MsG0180001186.01.T01:CDS
TCTTGAACTTGCCAGGAGAG+TGG 0.617568 1:+16965534 MsG0180001186.01.T01:CDS
AATTCAAGGTATTTCAACTG+AGG 0.618205 1:+16967575 MsG0180001186.01.T01:CDS
CTGAATCAGAAATCCTAAGT+GGG 0.618883 1:+16967757 MsG0180001186.01.T01:CDS
GATATAGTCGGTGACCGAGG+CGG 0.624049 1:-16965110 None:intergenic
TTCAAAACACAACATCGCCC+GGG 0.630141 1:-16965945 None:intergenic
AAAGATATAGTCGGTGACCG+AGG 0.632533 1:-16965113 None:intergenic
AGAAGGAGAAAGCCATGATG+AGG 0.633781 1:+16968051 MsG0180001186.01.T01:CDS
CAGGCACGGTGACATGATGA+GGG 0.635211 1:-16963329 None:intergenic
AATCTGTAGAAGAATGCCGT+TGG 0.636903 1:-16963611 None:intergenic
TTTGCTGGTCCAAATCAAGA+AGG 0.636907 1:+16968034 MsG0180001186.01.T01:CDS
CCTGACGCGAAGGTTAAACA+TGG 0.640840 1:+16965469 MsG0180001186.01.T01:CDS
AGATATTGATCCAAAGCCAA+CGG 0.640968 1:+16963595 MsG0180001186.01.T01:CDS
AGCAAATGGTAAACACACCA+TGG 0.644967 1:-16968017 None:intergenic
GCGAGGAGTTGGTTCAAGGA+CGG 0.645881 1:+16967864 MsG0180001186.01.T01:CDS
GAAAGATTCTCTGTATTGTG+GGG 0.645886 1:+16963674 MsG0180001186.01.T01:CDS
TCAGTGCAAATAATCCGCCT+CGG 0.645936 1:+16965096 MsG0180001186.01.T01:CDS
TGTTCCGGAAGTGATCTAGA+CGG 0.654419 1:+16966423 MsG0180001186.01.T01:CDS
GAGTTGGTTCAAGGACGGTG+GGG 0.658089 1:+16967869 MsG0180001186.01.T01:CDS
AAATGTCTTTACATCAGGCA+CGG 0.659012 1:-16963343 None:intergenic
TATATGATGGCCTTATGTAG+CGG 0.659739 1:+16963521 MsG0180001186.01.T01:CDS
GGTCCCTAAGGAAAGAGGCG+AGG 0.679645 1:+16967847 MsG0180001186.01.T01:CDS
AAACAACACAATCCACCATG+TGG 0.707365 1:-16965992 None:intergenic
GTATACTGGTGAAGAAAGTG+TGG 0.711055 1:+16963374 MsG0180001186.01.T01:CDS
TTCCGGAAGTGATCTAGACG+GGG 0.717127 1:+16966425 MsG0180001186.01.T01:CDS
ATGCGATTACTATGGCTGTG+AGG 0.723294 1:+16967826 MsG0180001186.01.T01:CDS
GAGGCGGATTATTTGCACTG+AGG 0.762972 1:-16965094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATAAGATTTATCATA+TGG - Chr1:16964543-16964562 None:intergenic 15.0%
!! AATATTATTTGACAAAAGAA+TGG + Chr1:16966291-16966310 MsG0180001186.01.T01:intron 15.0%
!! ACAAATAAGATTTATCATAT+GGG - Chr1:16964542-16964561 None:intergenic 15.0%
!! TATAAATCAAAGAATGTAAT+AGG + Chr1:16967538-16967557 MsG0180001186.01.T01:intron 15.0%
!! TTATAAAAAATGACAAAAGA+GGG - Chr1:16966348-16966367 None:intergenic 15.0%
!! TTTATAAAAAATGACAAAAG+AGG - Chr1:16966349-16966368 None:intergenic 15.0%
!!! ATTTTTCTGTATTTTTGTAT+GGG + Chr1:16966589-16966608 MsG0180001186.01.T01:intron 15.0%
!!! TATTACATTCTTTGATTTAT+AGG - Chr1:16967539-16967558 None:intergenic 15.0%
!! CTATTTAAAAGTTACGAAAA+TGG + Chr1:16963568-16963587 MsG0180001186.01.T01:CDS 20.0%
!! GAAAATTATCAATATGTTGA+TGG - Chr1:16965241-16965260 None:intergenic 20.0%
!! TGATTCAGATAACATAAAAT+TGG + Chr1:16965682-16965701 MsG0180001186.01.T01:intron 20.0%
!!! AACAATGTTGGTTTTTTTTT+GGG + Chr1:16964098-16964117 MsG0180001186.01.T01:intron 20.0%
!!! AATGTAATAGGAAAACTTTT+AGG + Chr1:16967550-16967569 MsG0180001186.01.T01:CDS 20.0%
!!! ATGTAATAGGAAAACTTTTA+GGG + Chr1:16967551-16967570 MsG0180001186.01.T01:CDS 20.0%
!!! ATTTTAGCCATATAAAAATG+TGG + Chr1:16965363-16965382 MsG0180001186.01.T01:intron 20.0%
!!! ATTTTGTTTTTCTTTTCAGT+AGG + Chr1:16966782-16966801 MsG0180001186.01.T01:intron 20.0%
!!! CATTTTCGTAACTTTTAAAT+AGG - Chr1:16963570-16963589 None:intergenic 20.0%
!!! CATTTTTCTGTATTTTTGTA+TGG + Chr1:16966588-16966607 MsG0180001186.01.T01:intron 20.0%
!!! TATTTAGCCACATTTTTATA+TGG - Chr1:16965373-16965392 None:intergenic 20.0%
!!! TGATTTTTTATGAACAATGT+TGG + Chr1:16964086-16964105 MsG0180001186.01.T01:intron 20.0%
! AAAAAGGAAAATGAAGAACA+TGG - Chr1:16963893-16963912 None:intergenic 25.0%
! AAAATACAGAAAAATGCCTA+TGG - Chr1:16966584-16966603 None:intergenic 25.0%
! ACTGCTAATGTAAAAAACAT+AGG - Chr1:16966963-16966982 None:intergenic 25.0%
! ACTGTCATTGAGTATATAAT+TGG - Chr1:16967320-16967339 None:intergenic 25.0%
! ACTTTAAACAAGATGTGAAA+TGG - Chr1:16964894-16964913 None:intergenic 25.0%
! AGAAAAGTTGTACTATTCAA+AGG + Chr1:16965022-16965041 MsG0180001186.01.T01:CDS 25.0%
! AGCTTTCATATGAGAATATT+TGG + Chr1:16963783-16963802 MsG0180001186.01.T01:CDS 25.0%
! CATTAGCTATATTAAGATGA+AGG + Chr1:16964207-16964226 MsG0180001186.01.T01:intron 25.0%
! GAAATAAAAATTGATGCTGT+TGG - Chr1:16964365-16964384 None:intergenic 25.0%
! GAAATATTTCACCAAAAGAA+GGG + Chr1:16967797-16967816 MsG0180001186.01.T01:CDS 25.0%
! GCTTATTAAGTATTCAAACA+AGG + Chr1:16967245-16967264 MsG0180001186.01.T01:intron 25.0%
! TAACATAAAATTGGATGTTC+TGG + Chr1:16965691-16965710 MsG0180001186.01.T01:intron 25.0%
!! AAGATGAAGGTTTTTATACT+GGG + Chr1:16964220-16964239 MsG0180001186.01.T01:intron 25.0%
!! AGTAAAACAATTAAGTTGCA+TGG + Chr1:16963303-16963322 MsG0180001186.01.T01:CDS 25.0%
!! GACGATGTTAAATTGTATTT+TGG + Chr1:16963635-16963654 MsG0180001186.01.T01:CDS 25.0%
!! TAAGATGAAGGTTTTTATAC+TGG + Chr1:16964219-16964238 MsG0180001186.01.T01:intron 25.0%
!! TACATTCTTTGATTTATAGG+TGG - Chr1:16967536-16967555 None:intergenic 25.0%
!! TATTTTGTAACAAGTATCAG+CGG - Chr1:16966168-16966187 None:intergenic 25.0%
!! TCTTGTTTAAAGTAATTCCT+TGG + Chr1:16964901-16964920 MsG0180001186.01.T01:intron 25.0%
!! TGTCATGATATATCTGATTT+TGG + Chr1:16964026-16964045 MsG0180001186.01.T01:intron 25.0%
!! TTTTCATAATATTCCCACTT+AGG - Chr1:16967773-16967792 None:intergenic 25.0%
!!! AAAACTTTTAGGGAAATTCA+AGG + Chr1:16967561-16967580 MsG0180001186.01.T01:CDS 25.0%
!!! ATACTTTGCAGTTTTAAACA+TGG - Chr1:16963827-16963846 None:intergenic 25.0%
!!! GAACAATGTTGGTTTTTTTT+TGG + Chr1:16964097-16964116 MsG0180001186.01.T01:intron 25.0%
AAAGTTGAAGAGAGCAAAAT+TGG - Chr1:16964454-16964473 None:intergenic 30.0%
AAATGGTATTTGAATCCTTG+AGG - Chr1:16964877-16964896 None:intergenic 30.0%
AACATTAAGCTCAAAAAACG+AGG - Chr1:16964594-16964613 None:intergenic 30.0%
AACCAATTATGACTACAAGT+TGG + Chr1:16967704-16967723 MsG0180001186.01.T01:CDS 30.0%
AATAAGCTAAAAACAGCTGA+TGG - Chr1:16967095-16967114 None:intergenic 30.0%
ACAAACCATAGTAACTATGA+TGG - Chr1:16967959-16967978 None:intergenic 30.0%
ACATCATGATCCAATACAAT+AGG - Chr1:16966528-16966547 None:intergenic 30.0%
ACCAATTATGACTACAAGTT+GGG + Chr1:16967705-16967724 MsG0180001186.01.T01:CDS 30.0%
ACTTACCATCATAGTTACTA+TGG + Chr1:16967951-16967970 MsG0180001186.01.T01:CDS 30.0%
AGACAATTTAGAAGAGCTTA+TGG + Chr1:16967051-16967070 MsG0180001186.01.T01:intron 30.0%
AGAGATTAATGTCTCAAATC+GGG + Chr1:16965202-16965221 MsG0180001186.01.T01:CDS 30.0%
AGATCATGCTACATATATGA+TGG + Chr1:16963508-16963527 MsG0180001186.01.T01:intron 30.0%
AGTAATGTCCAATGAGAAAA+TGG - Chr1:16966246-16966265 None:intergenic 30.0%
ATGATCCAATACAATAGGTT+GGG - Chr1:16966523-16966542 None:intergenic 30.0%
ATGCATAAAACTGTAAGTGT+TGG - Chr1:16966202-16966221 None:intergenic 30.0%
CAGAGATTAATGTCTCAAAT+CGG + Chr1:16965201-16965220 MsG0180001186.01.T01:CDS 30.0%
CGAAATATTTCACCAAAAGA+AGG + Chr1:16967796-16967815 MsG0180001186.01.T01:CDS 30.0%
CTCTTCTGTTTGTAGTTAAT+TGG + Chr1:16964564-16964583 MsG0180001186.01.T01:intron 30.0%
GATAACTTGATTCTAATACC+AGG + Chr1:16966385-16966404 MsG0180001186.01.T01:intron 30.0%
GGAAAACTTTGTTCATTATG+AGG + Chr1:16964775-16964794 MsG0180001186.01.T01:intron 30.0%
GTATTCAAACAAGGATATGT+TGG + Chr1:16967254-16967273 MsG0180001186.01.T01:intron 30.0%
GTGTGGTTGCTATAAAAATA+AGG + Chr1:16963391-16963410 MsG0180001186.01.T01:CDS 30.0%
TAGGAATCTTAGACATATAG+CGG - Chr1:16964730-16964749 None:intergenic 30.0%
TATATACTCAATGACAGTCT+TGG + Chr1:16967322-16967341 MsG0180001186.01.T01:CDS 30.0%
TATGCAGTGGTAATAAAGTT+TGG - Chr1:16964289-16964308 None:intergenic 30.0%
TCTACAAATGTCTTTACATC+AGG - Chr1:16963351-16963370 None:intergenic 30.0%
TTTAGATACACTGTTGATGT+AGG - Chr1:16964617-16964636 None:intergenic 30.0%
! AAGAATGGACATTTTGTCAT+TGG + Chr1:16966306-16966325 MsG0180001186.01.T01:intron 30.0%
! AATTCAAGGTATTTCAACTG+AGG + Chr1:16967575-16967594 MsG0180001186.01.T01:CDS 30.0%
! AATTGTCGATTGAGATAACA+AGG - Chr1:16965734-16965753 None:intergenic 30.0%
! ACAAAGTTTTCCCTGAAATT+CGG - Chr1:16964767-16964786 None:intergenic 30.0%
! AGTCAATTCCATTTTCTCAT+TGG + Chr1:16966235-16966254 MsG0180001186.01.T01:intron 30.0%
! ATTCAAGGTATTTCAACTGA+GGG + Chr1:16967576-16967595 MsG0180001186.01.T01:CDS 30.0%
! CAATATGTTGATGGAAATGA+CGG - Chr1:16965232-16965251 None:intergenic 30.0%
! GAGATTTGTTCAAATTCGAA+CGG + Chr1:16963457-16963476 MsG0180001186.01.T01:intron 30.0%
! GTACAATGAAGGTATGAAAA+GGG + Chr1:16967977-16967996 MsG0180001186.01.T01:CDS 30.0%
! TACTATGGTTTGTACAATGA+AGG + Chr1:16967966-16967985 MsG0180001186.01.T01:CDS 30.0%
! TGTACAATGAAGGTATGAAA+AGG + Chr1:16967976-16967995 MsG0180001186.01.T01:CDS 30.0%
! TTTTTCTTTTCAGTAGGAGA+TGG + Chr1:16966788-16966807 MsG0180001186.01.T01:intron 30.0%
! TTTTTGCTCCATATGAACTA+TGG + Chr1:16963966-16963985 MsG0180001186.01.T01:intron 30.0%
!! TAAAACTGTAAGTGTTGGAA+TGG - Chr1:16966197-16966216 None:intergenic 30.0%
!! TGCAAAGTATCTATTGATTC+AGG + Chr1:16963837-16963856 MsG0180001186.01.T01:intron 30.0%
!!! CAATTTTTTTCCGCTACATA+AGG - Chr1:16963534-16963553 None:intergenic 30.0%
!!! GTTTTTTTTTGGGTGTAAAC+CGG + Chr1:16964108-16964127 MsG0180001186.01.T01:intron 30.0%
!!! TGTGTTGTTTTTCCTCAAAA+AGG + Chr1:16966005-16966024 MsG0180001186.01.T01:CDS 30.0%
!!! TTTTTTTTTGGGTGTAAACC+GGG + Chr1:16964109-16964128 MsG0180001186.01.T01:intron 30.0%
AAATATCTCTTGAACTTGCC+AGG + Chr1:16965527-16965546 MsG0180001186.01.T01:CDS 35.0%
AAATGTCTTTACATCAGGCA+CGG - Chr1:16963346-16963365 None:intergenic 35.0%
AACATCCACCATAGTTCATA+TGG - Chr1:16963977-16963996 None:intergenic 35.0%
AACCAAATGCTGCAATTAGA+TGG + Chr1:16964312-16964331 MsG0180001186.01.T01:intron 35.0%
AACTCAACCTTTATTCTGAG+TGG - Chr1:16964987-16965006 None:intergenic 35.0%
ACAGTTATCACTGTACAAAC+TGG - Chr1:16964266-16964285 None:intergenic 35.0%
ACATTTGTAGAGCAGTATAC+TGG + Chr1:16963360-16963379 MsG0180001186.01.T01:CDS 35.0%
ACCATGGAAAGCTTAGAAAA+TGG - Chr1:16968004-16968023 None:intergenic 35.0%
ACTGAATCAGAAATCCTAAG+TGG + Chr1:16967756-16967775 MsG0180001186.01.T01:CDS 35.0%
AGATATTGATCCAAAGCCAA+CGG + Chr1:16963595-16963614 MsG0180001186.01.T01:CDS 35.0%
AGCTTTGCAAGTTCAATACA+TGG - Chr1:16967409-16967428 None:intergenic 35.0%
AGGAAAGATTCTCTGTATTG+TGG + Chr1:16963672-16963691 MsG0180001186.01.T01:CDS 35.0%
AGTTGATCCACTCAGAATAA+AGG + Chr1:16964977-16964996 MsG0180001186.01.T01:CDS 35.0%
ATATGTAGCATGATCTGTAG+TGG - Chr1:16963504-16963523 None:intergenic 35.0%
ATCTAATTGCAGCATTTGGT+TGG - Chr1:16964313-16964332 None:intergenic 35.0%
ATGGAACAAAGTTTCAGTTC+TGG + Chr1:16968086-16968105 MsG0180001186.01.T01:CDS 35.0%
ATTCTTTGGCGAAAAGATGA+GGG - Chr1:16967483-16967502 None:intergenic 35.0%
CAAAGAATATCCAGACTTCA+TGG + Chr1:16967495-16967514 MsG0180001186.01.T01:intron 35.0%
CATGAAGTCTGGATATTCTT+TGG - Chr1:16967497-16967516 None:intergenic 35.0%
CATGATCCAATACAATAGGT+TGG - Chr1:16966524-16966543 None:intergenic 35.0%
CCGACTATATCTTTGGATAA+CGG + Chr1:16965122-16965141 MsG0180001186.01.T01:CDS 35.0%
CCGTTATCCAAAGATATAGT+CGG - Chr1:16965125-16965144 None:intergenic 35.0%
CGACTATATCTTTGGATAAC+GGG + Chr1:16965123-16965142 MsG0180001186.01.T01:CDS 35.0%
CTAAATATGCTGCTAGACTT+GGG + Chr1:16965386-16965405 MsG0180001186.01.T01:CDS 35.0%
CTGAATCAGAAATCCTAAGT+GGG + Chr1:16967757-16967776 MsG0180001186.01.T01:CDS 35.0%
CTTATCTACTCTTGATGTCA+AGG + Chr1:16965763-16965782 MsG0180001186.01.T01:intron 35.0%
GAAAGATTCTCTGTATTGTG+GGG + Chr1:16963674-16963693 MsG0180001186.01.T01:CDS 35.0%
GGAAAGATTCTCTGTATTGT+GGG + Chr1:16963673-16963692 MsG0180001186.01.T01:CDS 35.0%
GTTTGAACTTCTTATCGTCA+TGG - Chr1:16963760-16963779 None:intergenic 35.0%
TATATGCAAAAGCTTCTGCT+TGG + Chr1:16967919-16967938 MsG0180001186.01.T01:CDS 35.0%
TATGTCTTCTCTGATGGAAT+CGG + Chr1:16965502-16965521 MsG0180001186.01.T01:CDS 35.0%
TATTCTTTGGCGAAAAGATG+AGG - Chr1:16967484-16967503 None:intergenic 35.0%
TCAAGAATGATGATCAACGA+GGG + Chr1:16966731-16966750 MsG0180001186.01.T01:intron 35.0%
TCCATCAGAGAAGACATATT+CGG - Chr1:16965500-16965519 None:intergenic 35.0%
TCCATTGGATCAATTGTCAT+GGG - Chr1:16966489-16966508 None:intergenic 35.0%
TCCCAACTTGTAGTCATAAT+TGG - Chr1:16967709-16967728 None:intergenic 35.0%
TCTCTGTAATAGTTCTTCAG+AGG - Chr1:16964643-16964662 None:intergenic 35.0%
TGAAATGCTTCTGCTATCAT+TGG + Chr1:16964177-16964196 MsG0180001186.01.T01:intron 35.0%
TGGAAAATCAACTGCTATTG+AGG - Chr1:16967434-16967453 None:intergenic 35.0%
TGGAACAAAGTTTCAGTTCT+GGG + Chr1:16968087-16968106 MsG0180001186.01.T01:CDS 35.0%
TGTTCATTATGAGGAATCGA+GGG + Chr1:16964784-16964803 MsG0180001186.01.T01:intron 35.0%
TTCAAGAATGATGATCAACG+AGG + Chr1:16966730-16966749 MsG0180001186.01.T01:intron 35.0%
TTCGGAAAATCTCTGTTACT+AGG - Chr1:16964749-16964768 None:intergenic 35.0%
TTCTTATGCCTTATGAAGCA+TGG - Chr1:16967025-16967044 None:intergenic 35.0%
TTCTTCCCAACCTATTGTAT+TGG + Chr1:16966515-16966534 MsG0180001186.01.T01:CDS 35.0%
TTGGAAATTCTGCTTTCTTG+TGG - Chr1:16964346-16964365 None:intergenic 35.0%
TTGTTCATTATGAGGAATCG+AGG + Chr1:16964783-16964802 MsG0180001186.01.T01:intron 35.0%
! ACAGAGATTTTCCGAATTTC+AGG + Chr1:16964753-16964772 MsG0180001186.01.T01:intron 35.0%
! ACCATTTTCTAAGCTTTCCA+TGG + Chr1:16968000-16968019 MsG0180001186.01.T01:CDS 35.0%
! ATCACCTTTTTCTTGCAATC+CGG + Chr1:16964827-16964846 MsG0180001186.01.T01:intron 35.0%
! CAGAGATTTTCCGAATTTCA+GGG + Chr1:16964754-16964773 MsG0180001186.01.T01:intron 35.0%
! CCACAAAAGTATACTTTGCA+TGG - Chr1:16965179-16965198 None:intergenic 35.0%
! CCATGCAAAGTATACTTTTG+TGG + Chr1:16965176-16965195 MsG0180001186.01.T01:CDS 35.0%
! CGATTTGAGACATTAATCTC+TGG - Chr1:16965203-16965222 None:intergenic 35.0%
! GGACATCTACTTTGTTTGTT+GGG + Chr1:16966446-16966465 MsG0180001186.01.T01:CDS 35.0%
! TTTTTCCTCAAAAAGGTCAC+AGG + Chr1:16966012-16966031 MsG0180001186.01.T01:CDS 35.0%
!! ACAAGGATATGTTGGTAACA+TGG + Chr1:16967262-16967281 MsG0180001186.01.T01:intron 35.0%
!! ATGTTGGTAACATGGCTTAA+TGG + Chr1:16967270-16967289 MsG0180001186.01.T01:intron 35.0%
!! GCAGTTGATTTTCCAAAAAC+CGG + Chr1:16967439-16967458 MsG0180001186.01.T01:CDS 35.0%
!! TATATCTTTGGATAACGGGT+TGG + Chr1:16965127-16965146 MsG0180001186.01.T01:CDS 35.0%
!! TATATGATGGCCTTATGTAG+CGG + Chr1:16963521-16963540 MsG0180001186.01.T01:CDS 35.0%
!!! CTGTACAAACTGGTTTTGTA+AGG - Chr1:16964256-16964275 None:intergenic 35.0%
!!! GATTTATAGGTGGTTTTGTC+AGG - Chr1:16967526-16967545 None:intergenic 35.0%
AAACAACACAATCCACCATG+TGG - Chr1:16965995-16966014 None:intergenic 40.0%
AAGAATGATGATCAACGAGG+GGG + Chr1:16966733-16966752 MsG0180001186.01.T01:intron 40.0%
AATCTGTAGAAGAATGCCGT+TGG - Chr1:16963614-16963633 None:intergenic 40.0%
ACATCCGGATTGCAAGAAAA+AGG - Chr1:16964834-16964853 None:intergenic 40.0%
ACCCATGACAATTGATCCAA+TGG + Chr1:16966485-16966504 MsG0180001186.01.T01:CDS 40.0%
ACCGAATATGTCTTCTCTGA+TGG + Chr1:16965496-16965515 MsG0180001186.01.T01:CDS 40.0%
ACTCTCATTCCGTGTAGTTA+AGG + Chr1:16965888-16965907 MsG0180001186.01.T01:intron 40.0%
AGAGATTCCCTGATAAGCAA+TGG + Chr1:16964658-16964677 MsG0180001186.01.T01:intron 40.0%
AGCAAATGGTAAACACACCA+TGG - Chr1:16968020-16968039 None:intergenic 40.0%
ATGGTGTGTTTACCATTTGC+TGG + Chr1:16968019-16968038 MsG0180001186.01.T01:CDS 40.0%
ATTCCGTGTAGTTAAGGGTA+TGG + Chr1:16965894-16965913 MsG0180001186.01.T01:intron 40.0%
ATTGGATCAATTGTCATGGG+TGG - Chr1:16966486-16966505 None:intergenic 40.0%
CAAGAATGATGATCAACGAG+GGG + Chr1:16966732-16966751 MsG0180001186.01.T01:intron 40.0%
CATCCATTCCCTTATGGAAT+CGG - Chr1:16965339-16965358 None:intergenic 40.0%
CCTATGGATGTAAAGCTCAA+AGG - Chr1:16966568-16966587 None:intergenic 40.0%
CCTTTGAGCTTTACATCCAT+AGG + Chr1:16966565-16966584 MsG0180001186.01.T01:intron 40.0%
CTACCATACCCTTAACTACA+CGG - Chr1:16965900-16965919 None:intergenic 40.0%
CTCCATTGGATCAATTGTCA+TGG - Chr1:16966490-16966509 None:intergenic 40.0%
CTCTCATTCCGTGTAGTTAA+GGG + Chr1:16965889-16965908 MsG0180001186.01.T01:intron 40.0%
GATTCCATAAGGGAATGGAT+GGG + Chr1:16965338-16965357 MsG0180001186.01.T01:intron 40.0%
GATTCGGATATGGAATTCGA+GGG + Chr1:16967645-16967664 MsG0180001186.01.T01:CDS 40.0%
GCGGAAAAAAATTGCAGTTC+TGG + Chr1:16963540-16963559 MsG0180001186.01.T01:CDS 40.0%
GCTAAATATGCTGCTAGACT+TGG + Chr1:16965385-16965404 MsG0180001186.01.T01:CDS 40.0%
GGATCATGATGTTGAGATTG+AGG + Chr1:16966536-16966555 MsG0180001186.01.T01:CDS 40.0%
GGCTAAGGAGTCATATGATT+CGG + Chr1:16967629-16967648 MsG0180001186.01.T01:CDS 40.0%
GGTATTTGAATCCTTGAGGA+GGG - Chr1:16964873-16964892 None:intergenic 40.0%
GTAATTCCTTGGTTTCAGCA+CGG + Chr1:16964912-16964931 MsG0180001186.01.T01:intron 40.0%
GTATACTGGTGAAGAAAGTG+TGG + Chr1:16963374-16963393 MsG0180001186.01.T01:CDS 40.0%
GTCAAACTCCATGCTTCATA+AGG + Chr1:16967014-16967033 MsG0180001186.01.T01:intron 40.0%
TACATCCTTCACACTTGAAG+TGG + Chr1:16967608-16967627 MsG0180001186.01.T01:CDS 40.0%
TATGGAATTCGAGGGCTTTA+TGG + Chr1:16967653-16967672 MsG0180001186.01.T01:CDS 40.0%
TCACTCCTTGCAGTTGTATT+GGG + Chr1:16964697-16964716 MsG0180001186.01.T01:intron 40.0%
TCTGTTATGAACCTGCAAGA+TGG + Chr1:16965048-16965067 MsG0180001186.01.T01:CDS 40.0%
TGAAATTATTCCTGACGCGA+AGG + Chr1:16965459-16965478 MsG0180001186.01.T01:CDS 40.0%
TGGCTTTCTCCTTCTTGATT+TGG - Chr1:16968046-16968065 None:intergenic 40.0%
TGGGAAGAATCATACTCCAT+TGG - Chr1:16966504-16966523 None:intergenic 40.0%
TGGTATTTGAATCCTTGAGG+AGG - Chr1:16964874-16964893 None:intergenic 40.0%
TTCACTCCTTGCAGTTGTAT+TGG + Chr1:16964696-16964715 MsG0180001186.01.T01:intron 40.0%
TTCTTTGGCGAAAAGATGAG+GGG - Chr1:16967482-16967501 None:intergenic 40.0%
TTGCTCCATATGAACTATGG+TGG + Chr1:16963969-16963988 MsG0180001186.01.T01:intron 40.0%
TTGGGATTGGATTGAGAAAG+TGG + Chr1:16963720-16963739 MsG0180001186.01.T01:CDS 40.0%
TTTCAAAACACAACATCGCC+CGG - Chr1:16965949-16965968 None:intergenic 40.0%
TTTCACCAAAAGAAGGGATG+CGG + Chr1:16967803-16967822 MsG0180001186.01.T01:CDS 40.0%
TTTGCTGGTCCAAATCAAGA+AGG + Chr1:16968034-16968053 MsG0180001186.01.T01:CDS 40.0%
! ATGGATGCTAGTGCAGATTT+TGG + Chr1:16963701-16963720 MsG0180001186.01.T01:CDS 40.0%
! CCTTTTGACGCTTAGAGTTT+CGG - Chr1:16965431-16965450 None:intergenic 40.0%
! CTACAAGTTGGGAAATCTGA+TGG + Chr1:16967716-16967735 MsG0180001186.01.T01:CDS 40.0%
! GGAGTCATATGATTCGGATA+TGG + Chr1:16967635-16967654 MsG0180001186.01.T01:CDS 40.0%
! GGGACATCTACTTTGTTTGT+TGG + Chr1:16966445-16966464 MsG0180001186.01.T01:CDS 40.0%
! TATGTTGATGGAAATGACGG+AGG - Chr1:16965229-16965248 None:intergenic 40.0%
! TGATTCGGATATGGAATTCG+AGG + Chr1:16967644-16967663 MsG0180001186.01.T01:CDS 40.0%
! TGGATGCTAGTGCAGATTTT+GGG + Chr1:16963702-16963721 MsG0180001186.01.T01:CDS 40.0%
! TTCTACCTGTGACCTTTTTG+AGG - Chr1:16966020-16966039 None:intergenic 40.0%
!! AACTGTAAGTGTTGGAATGG+AGG - Chr1:16966194-16966213 None:intergenic 40.0%
!! GATAGCAGAAGCATTTCACA+AGG - Chr1:16964175-16964194 None:intergenic 40.0%
!! GGAAATCTGATGGACTACTA+TGG + Chr1:16967726-16967745 MsG0180001186.01.T01:CDS 40.0%
!! TCTGTTGATAATGCGCACAA+TGG - Chr1:16966060-16966079 None:intergenic 40.0%
!! TCTTGATTTGGACCAGCAAA+TGG - Chr1:16968034-16968053 None:intergenic 40.0%
!! TTTTGGCTGTCAGATCTCAA+AGG + Chr1:16963652-16963671 MsG0180001186.01.T01:CDS 40.0%
!!! ATGTTGTGTTTTGAAAGCCG+TGG + Chr1:16965953-16965972 MsG0180001186.01.T01:CDS 40.0%
AAAGATATAGTCGGTGACCG+AGG - Chr1:16965116-16965135 None:intergenic 45.0%
AAAGGTGATCCTCTCTCCAA+TGG - Chr1:16964816-16964835 None:intergenic 45.0%
AAGCATTTCACAAGGCTCGA+TGG - Chr1:16964167-16964186 None:intergenic 45.0%
AAGGAGTGAAGTCTATCGCA+CGG - Chr1:16964686-16964705 None:intergenic 45.0%
AGAAGGAGAAAGCCATGATG+AGG + Chr1:16968051-16968070 MsG0180001186.01.T01:CDS 45.0%
ATCTCCCATCCATTCCCTTA+TGG - Chr1:16965345-16965364 None:intergenic 45.0%
ATGCGATTACTATGGCTGTG+AGG + Chr1:16967826-16967845 MsG0180001186.01.T01:CDS 45.0%
CACGGATCCATTGCTTATCA+GGG - Chr1:16964668-16964687 None:intergenic 45.0%
CAGGAGAGTGGCTAAAAATG+TGG + Chr1:16965546-16965565 MsG0180001186.01.T01:CDS 45.0%
CCGAAACTCTAAGCGTCAAA+AGG + Chr1:16965428-16965447 MsG0180001186.01.T01:CDS 45.0%
CGATTCCATAAGGGAATGGA+TGG + Chr1:16965337-16965356 MsG0180001186.01.T01:intron 45.0%
CGCCATCTAATTGCAGCATT+TGG - Chr1:16964317-16964336 None:intergenic 45.0%
CTCTGTATTGTGGGGAAAGA+TGG + Chr1:16963682-16963701 MsG0180001186.01.T01:CDS 45.0%
CTTAGCCACTTCAAGTGTGA+AGG - Chr1:16967616-16967635 None:intergenic 45.0%
CTTCACACTTGAAGTGGCTA+AGG + Chr1:16967614-16967633 MsG0180001186.01.T01:CDS 45.0%
GAATCGAGGGTCAATACCAT+TGG + Chr1:16964797-16964816 MsG0180001186.01.T01:intron 45.0%
GATGAGGATGCATTCTAGCA+TGG + Chr1:16968067-16968086 MsG0180001186.01.T01:CDS 45.0%
GCGTGAAAAATCGCTCTCTA+TGG + Chr1:16965279-16965298 MsG0180001186.01.T01:intron 45.0%
GCTAGAATGCATCCTCATCA+TGG - Chr1:16968066-16968085 None:intergenic 45.0%
TCAGTGCAAATAATCCGCCT+CGG + Chr1:16965096-16965115 MsG0180001186.01.T01:CDS 45.0%
TCATGACAACTTCACAGACG+AGG - Chr1:16965643-16965662 None:intergenic 45.0%
TCGTCTGTGAAGTTGTCATG+AGG + Chr1:16965642-16965661 MsG0180001186.01.T01:intron 45.0%
TCTTTGGCGAAAAGATGAGG+GGG - Chr1:16967481-16967500 None:intergenic 45.0%
TGATCTTTCAGCCATCTTGC+AGG - Chr1:16965062-16965081 None:intergenic 45.0%
TGCAAAGACTGTGTGTGCAT+TGG - Chr1:16967356-16967375 None:intergenic 45.0%
TGCCATCTGCGTTTCAGATT+CGG + Chr1:16965580-16965599 MsG0180001186.01.T01:CDS 45.0%
TGTTCCGGAAGTGATCTAGA+CGG + Chr1:16966423-16966442 MsG0180001186.01.T01:CDS 45.0%
TTCAAAACACAACATCGCCC+GGG - Chr1:16965948-16965967 None:intergenic 45.0%
TTGTGTTCGATGTCTGTGTC+AGG + Chr1:16966992-16967011 MsG0180001186.01.T01:intron 45.0%
! CAAGGTATTTCAACTGAGGG+TGG + Chr1:16967579-16967598 MsG0180001186.01.T01:CDS 45.0%
! GCTAGACTTGGGCAATCTTT+TGG + Chr1:16965397-16965416 MsG0180001186.01.T01:CDS 45.0%
! TACCGAATCTGAAACGCAGA+TGG - Chr1:16965585-16965604 None:intergenic 45.0%
! TCAGGCTTTTCCATGAAGTC+TGG - Chr1:16967508-16967527 None:intergenic 45.0%
! TCGGTCACCGACTATATCTT+TGG + Chr1:16965115-16965134 MsG0180001186.01.T01:CDS 45.0%
! TCTGCGTTTCAGATTCGGTA+TGG + Chr1:16965585-16965604 MsG0180001186.01.T01:intron 45.0%
!! TAGAAGAATGCCGTTGGCTT+TGG - Chr1:16963608-16963627 None:intergenic 45.0%
!!! CACATTTTTAGCCACTCTCC+TGG - Chr1:16965548-16965567 None:intergenic 45.0%
!!! GCTAGTGCAGATTTTGGGAT+TGG + Chr1:16963707-16963726 MsG0180001186.01.T01:CDS 45.0%
!!! AACAAAATTTAAAATAAAAA+AGG - Chr1:16963909-16963928 None:intergenic 5.0%
AAAAATCCCTGCTTGCACCC+GGG + Chr1:16965928-16965947 MsG0180001186.01.T01:CDS 50.0%
AACTCCTCGCCTCTTTCCTT+AGG - Chr1:16967854-16967873 None:intergenic 50.0%
ACTCCTCGCCTCTTTCCTTA+GGG - Chr1:16967853-16967872 None:intergenic 50.0%
CAATCCGGATGTTGTTCCCA+TGG + Chr1:16964842-16964861 MsG0180001186.01.T01:intron 50.0%
CCACATCCAAACGAGTGTTC+CGG + Chr1:16966408-16966427 MsG0180001186.01.T01:CDS 50.0%
CCATGTTTAACCTTCGCGTC+AGG - Chr1:16965472-16965491 None:intergenic 50.0%
CCTGACGCGAAGGTTAAACA+TGG + Chr1:16965469-16965488 MsG0180001186.01.T01:CDS 50.0%
GAAAAATCCCTGCTTGCACC+CGG + Chr1:16965927-16965946 MsG0180001186.01.T01:CDS 50.0%
GACAACTTCACAGACGAGGT+TGG - Chr1:16965639-16965658 None:intergenic 50.0%
GACTGCCCAATACAACTGCA+AGG - Chr1:16964705-16964724 None:intergenic 50.0%
GCAACCATGGGAACAACATC+CGG - Chr1:16964849-16964868 None:intergenic 50.0%
GCACGGATCCATTGCTTATC+AGG - Chr1:16964669-16964688 None:intergenic 50.0%
GGATGCGGATGCGATTACTA+TGG + Chr1:16967818-16967837 MsG0180001186.01.T01:CDS 50.0%
GGCTCAGACATTGCTTTAGC+AGG - Chr1:16967388-16967407 None:intergenic 50.0%
GGGTATAACTGCTGGGATAC+CGG - Chr1:16967461-16967480 None:intergenic 50.0%
GGGTCAATACCATTGGAGAG+AGG + Chr1:16964804-16964823 MsG0180001186.01.T01:intron 50.0%
GTGGGGCTGATGTAGATTCT+GGG + Chr1:16967886-16967905 MsG0180001186.01.T01:CDS 50.0%
GTTCCGGAAGTGATCTAGAC+GGG + Chr1:16966424-16966443 MsG0180001186.01.T01:CDS 50.0%
TAAGGAAAGAGGCGAGGAGT+TGG + Chr1:16967853-16967872 MsG0180001186.01.T01:CDS 50.0%
TCACTTCCGGAACACTCGTT+TGG - Chr1:16966417-16966436 None:intergenic 50.0%
TCTTGAACTTGCCAGGAGAG+TGG + Chr1:16965534-16965553 MsG0180001186.01.T01:CDS 50.0%
TGCTGCAATTAGATGGCGAG+CGG + Chr1:16964319-16964338 MsG0180001186.01.T01:intron 50.0%
TGTGAGGTCCCTAAGGAAAG+AGG + Chr1:16967842-16967861 MsG0180001186.01.T01:CDS 50.0%
TTCCGGAAGTGATCTAGACG+GGG + Chr1:16966425-16966444 MsG0180001186.01.T01:CDS 50.0%
TTTCAGCACGGCTGTCTTTC+AGG + Chr1:16964924-16964943 MsG0180001186.01.T01:intron 50.0%
TTTGCTCTGCGTGCAACAAC+CGG + Chr1:16965305-16965324 MsG0180001186.01.T01:intron 50.0%
! AGATGAGGGGGTATAACTGC+TGG - Chr1:16967469-16967488 None:intergenic 50.0%
! CGTTTCAGATTCGGTATGGC+GGG + Chr1:16965589-16965608 MsG0180001186.01.T01:intron 50.0%
! GATGAGGGGGTATAACTGCT+GGG - Chr1:16967468-16967487 None:intergenic 50.0%
! GCATTTGGTTGGCTATGCAG+TGG - Chr1:16964302-16964321 None:intergenic 50.0%
! GCGTTTCAGATTCGGTATGG+CGG + Chr1:16965588-16965607 MsG0180001186.01.T01:intron 50.0%
!! ACGGGTTGGTATATGTTCGC+AGG + Chr1:16965141-16965160 MsG0180001186.01.T01:CDS 50.0%
!! ATTCGGTATGGCGGGTACAA+AGG + Chr1:16965597-16965616 MsG0180001186.01.T01:intron 50.0%
!! CGGGTTGGTATATGTTCGCA+GGG + Chr1:16965142-16965161 MsG0180001186.01.T01:CDS 50.0%
!! CTGCCGATTCCATAAGGGAA+TGG + Chr1:16965333-16965352 MsG0180001186.01.T01:intron 50.0%
!! GAGGCGGATTATTTGCACTG+AGG - Chr1:16965097-16965116 None:intergenic 50.0%
!! GCTCACTGCCGATTCCATAA+GGG + Chr1:16965328-16965347 MsG0180001186.01.T01:intron 50.0%
!!! ACTGCTGGGATACCGGTTTT+TGG - Chr1:16967454-16967473 None:intergenic 50.0%
ACACTCGTTTGGATGTGGCC+TGG - Chr1:16966406-16966425 None:intergenic 55.0%
AGACAGCCGTGCTGAAACCA+AGG - Chr1:16964921-16964940 None:intergenic 55.0%
CAGGCACGGTGACATGATGA+GGG - Chr1:16963332-16963351 None:intergenic 55.0%
CCGGAACACTCGTTTGGATG+TGG - Chr1:16966411-16966430 None:intergenic 55.0%
CTATGGCTGTGAGGTCCCTA+AGG + Chr1:16967835-16967854 MsG0180001186.01.T01:CDS 55.0%
CTTGAGGAGGGAGCAACCAT+GGG - Chr1:16964861-16964880 None:intergenic 55.0%
GATATAGTCGGTGACCGAGG+CGG - Chr1:16965113-16965132 None:intergenic 55.0%
GGTGGGGCTGATGTAGATTC+TGG + Chr1:16967885-16967904 MsG0180001186.01.T01:CDS 55.0%
GTCCCCGTCTAGATCACTTC+CGG - Chr1:16966430-16966449 None:intergenic 55.0%
TATGGAATCGGCAGTGAGCC+CGG - Chr1:16965327-16965346 None:intergenic 55.0%
TCAGGCACGGTGACATGATG+AGG - Chr1:16963333-16963352 None:intergenic 55.0%
TTGCTCTGCGTGCAACAACC+GGG + Chr1:16965306-16965325 MsG0180001186.01.T01:intron 55.0%
! AGAGGCGAGGAGTTGGTTCA+AGG + Chr1:16967860-16967879 MsG0180001186.01.T01:CDS 55.0%
! AGGAGTTGGTTCAAGGACGG+TGG + Chr1:16967867-16967886 MsG0180001186.01.T01:CDS 55.0%
! CGCATCCGCATCCCTTCTTT+TGG - Chr1:16967811-16967830 None:intergenic 55.0%
! GAGTTGGTTCAAGGACGGTG+GGG + Chr1:16967869-16967888 MsG0180001186.01.T01:CDS 55.0%
! GCGAGGAGTTGGTTCAAGGA+CGG + Chr1:16967864-16967883 MsG0180001186.01.T01:CDS 55.0%
! GGAGTTGGTTCAAGGACGGT+GGG + Chr1:16967868-16967887 MsG0180001186.01.T01:CDS 55.0%
!! GGCTCACTGCCGATTCCATA+AGG + Chr1:16965327-16965346 MsG0180001186.01.T01:intron 55.0%
CCATGGTTGCTCCCTCCTCA+AGG + Chr1:16964859-16964878 MsG0180001186.01.T01:intron 60.0%
CCTTGAGGAGGGAGCAACCA+TGG - Chr1:16964862-16964881 None:intergenic 60.0%
GCGCAAAGCTGGCACATCCA+CGG - Chr1:16965973-16965992 None:intergenic 60.0%
GGTCCCTAAGGAAAGAGGCG+AGG + Chr1:16967847-16967866 MsG0180001186.01.T01:CDS 60.0%
TCCACCATGTGGCGCAAAGC+TGG - Chr1:16965984-16966003 None:intergenic 60.0%
TGTGCCAGCTTTGCGCCACA+TGG + Chr1:16965977-16965996 MsG0180001186.01.T01:CDS 60.0%
! TGGCGGGTACAAAGGAGTCG+TGG + Chr1:16965605-16965624 MsG0180001186.01.T01:intron 60.0%
AACATCGCCCGGGTGCAAGC+AGG - Chr1:16965938-16965957 None:intergenic 65.0%
ACATCGCCCGGGTGCAAGCA+GGG - Chr1:16965937-16965956 None:intergenic 65.0%
GCCAGCTTTGCGCCACATGG+TGG + Chr1:16965980-16965999 MsG0180001186.01.T01:CDS 65.0%
AGTCTCCGCAACCGCGCACG+CGG - Chr1:16964141-16964160 None:intergenic 70.0%
ATCCTCCGCGTGCGCGGTTG+CGG + Chr1:16964133-16964152 MsG0180001186.01.T01:intron 70.0%
CCGCGCACGCGGAGGATACC+CGG - Chr1:16964130-16964149 None:intergenic 75.0%
CCGGGTATCCTCCGCGTGCG+CGG + Chr1:16964127-16964146 MsG0180001186.01.T01:intron 75.0%
! CTCCGCAACCGCGCACGCGG+AGG - Chr1:16964138-16964157 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 16963294 16968124 16963294 ID=MsG0180001186.01;Name=MsG0180001186.01
Chr1 mRNA 16963294 16968124 16963294 ID=MsG0180001186.01.T01;Parent=MsG0180001186.01;Name=MsG0180001186.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|0.85|0.75|8|0|659
Chr1 exon 16963294 16963417 16963294 ID=MsG0180001186.01.T01:exon:31575;Parent=MsG0180001186.01.T01
Chr1 exon 16963510 16963842 16963510 ID=MsG0180001186.01.T01:exon:31576;Parent=MsG0180001186.01.T01
Chr1 exon 16964946 16965223 16964946 ID=MsG0180001186.01.T01:exon:31577;Parent=MsG0180001186.01.T01
Chr1 exon 16965370 16965601 16965370 ID=MsG0180001186.01.T01:exon:31578;Parent=MsG0180001186.01.T01
Chr1 exon 16965910 16966033 16965910 ID=MsG0180001186.01.T01:exon:31579;Parent=MsG0180001186.01.T01
Chr1 exon 16966407 16966557 16966407 ID=MsG0180001186.01.T01:exon:31580;Parent=MsG0180001186.01.T01
Chr1 exon 16967298 16967460 16967298 ID=MsG0180001186.01.T01:exon:31581;Parent=MsG0180001186.01.T01
Chr1 exon 16967550 16968124 16967550 ID=MsG0180001186.01.T01:exon:31582;Parent=MsG0180001186.01.T01
Chr1 CDS 16963294 16963417 16963294 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Chr1 CDS 16963510 16963842 16963510 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Chr1 CDS 16964946 16965223 16964946 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Chr1 CDS 16965370 16965601 16965370 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Chr1 CDS 16965910 16966033 16965910 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Chr1 CDS 16966407 16966557 16966407 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Chr1 CDS 16967298 16967460 16967298 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Chr1 CDS 16967550 16968124 16967550 ID=MsG0180001186.01.T01:cds;Parent=MsG0180001186.01.T01
Gene Sequence

>MsG0180001186.01.T01

ATGGTTAAAAGTAAAACAATTAAGTTGCATGGATTCCCTCATCATGTCACCGTGCCTGATGTAAAGACATTTGTAGAGCAGTATACTGGTGAAGAAAGTGTGGTTGCTATAAAAATAAGGAAGTATCATGCTACATATATGATGGCCTTATGTAGCGGAAAAAAATTGCAGTTCTGGAAATCCTATTTAAAAGTTACGAAAATGGAAAGAGATATTGATCCAAAGCCAACGGCATTCTTCTACAGATTAGACGATGTTAAATTGTATTTTGGCTGTCAGATCTCAAAGGAAAGATTCTCTGTATTGTGGGGAAAGATGGATGCTAGTGCAGATTTTGGGATTGGATTGAGAAAGTGGCGATTCTCTATGTGCCATGACGATAAGAAGTTCAAACTTGAGCTTTCATATGAGAATATTTGGAAGATTGAACTGCATCAACCATGTTTAAAACTGCAAAGTTCTGAACTTGATAATGCTTTCTATCGTCTAGTTGATCCACTCAGAATAAAGGTTGAGTTTATCGAGCATGCTTTAGAAAAGTTGTACTATTCAAAGGATTTCTGTTATGAACCTGCAAGATGGCTGAAAGATCAGTACAGAATGTACCTCAGTGCAAATAATCCGCCTCGGTCACCGACTATATCTTTGGATAACGGGTTGGTATATGTTCGCAGGGTTCAAATAACACCATGCAAAGTATACTTTTGTGGTCCAGAGATTAATGTCTCAAATCGGCCATATAAAAATGTGGCTAAATATGCTGCTAGACTTGGGCAATCTTTTGGTTCGTCTACCGAAACTCTAAGCGTCAAAAGGAACGAAATTGAAATTATTCCTGACGCGAAGGTTAAACATGGTGCAACCGAATATGTCTTCTCTGATGGAATCGGAAAAATATCTCTTGAACTTGCCAGGAGAGTGGCTAAAAATGTGGTCATGATTCAATGCCATCTGCGTTTCAGATTCGGGTATGGTAGTAGTAGCGAAAAATCCCTGCTTGCACCCGGGCGATGTTGTGTTTTGAAAGCCGTGGATGTGCCAGCTTTGCGCCACATGGTGGATTGTGTTGTTTTTCCTCAAAAAGGTCACAGGCCACATCCAAACGAGTGTTCCGGAAGTGATCTAGACGGGGACATCTACTTTGTTTGTTGGGATTCTGAATTGATTCCACCCATGACAATTGATCCAATGGAGTATGATTCTTCCCAACCTATTGTATTGGATCATGATGTTGAGATTGAGGAGGTGGAGGAGTATTTCACCAATTATATACTCAATGACAGTCTTGGAATAATTTCCAATGCACACACAGTCTTTGCAGATAAAGAACCTGCTAAAGCAATGTCTGAGCCATGTATTGAACTTGCAAAGCTATCCTCAATAGCAGTTGATTTTCCAAAAACCGAATGTAATAGGAAAACTTTTAGGGAAATTCAAGGTATTTCAACTGAGGGTGGTTCTATTACATCCTTCACACTTGAAGTGGCTAAGGAGTCATATGATTCGGATATGGAATTCGAGGGCTTTATGGATTATGTCGACGATGCTTTCTATCACAAAACCAATTATGACTACAAGTTGGGAAATCTGATGGACTACTATGGTATCAAAACTGAATCAGAAATCCTAAGTGGGAATATTATGAAAATGTCGAAATATTTCACCAAAAGAAGGGATGCGGATGCGATTACTATGGCTGTGAGGTCCCTAAGGAAAGAGGCGAGGAGTTGGTTCAAGGACGGTGGGGCTGATGTAGATTCTGGGAGTGATGATGTATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCATAGTTACTATGGTTTGTACAATGAAGGTATGAAAAGGGACCATTTTCTAAGCTTTCCATGGTGTGTTTACCATTTGCTGGTCCAAATCAAGAAGGAGAAAGCCATGATGAGGATGCATTCTAGCATGGAACAAAGTTTCAGTTCTGGGTTGCGTCTTGATTGA
Protein sequence

>MsG0180001186.01.T01

MVKSKTIKLHGFPHHVTVPDVKTFVEQYTGEESVVAIKIRKYHATYMMALCSGKKLQFWKSYLKVTKMERDIDPKPTAFFYRLDDVKLYFGCQISKERFSVLWGKMDASADFGIGLRKWRFSMCHDDKKFKLELSYENIWKIELHQPCLKLQSSELDNAFYRLVDPLRIKVEFIEHALEKLYYSKDFCYEPARWLKDQYRMYLSANNPPRSPTISLDNGLVYVRRVQITPCKVYFCGPEINVSNRPYKNVAKYAARLGQSFGSSTETLSVKRNEIEIIPDAKVKHGATEYVFSDGIGKISLELARRVAKNVVMIQCHLRFRFGYGSSSEKSLLAPGRCCVLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPMTIDPMEYDSSQPIVLDHDVEIEEVEEYFTNYILNDSLGIISNAHTVFADKEPAKAMSEPCIELAKLSSIAVDFPKTECNRKTFREIQGISTEGGSITSFTLEVAKESYDSDMEFEGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTESEILSGNIMKMSKYFTKRRDADAITMAVRSLRKEARSWFKDGGADVDSGSDDVYAKASAWYYVTYHHSYYGLYNEGMKRDHFLSFPWCVYHLLVQIKKEKAMMRMHSSMEQSFSSGLRLD*