AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001660.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001660.01.T01 MTR_1g040675 56.757 111 28 3 1 111 96 186 1.78e-30 107
MsG0180001660.01.T01 MTR_1g076270 48.598 107 35 3 1 107 92 178 1.57e-23 89.4
MsG0180001660.01.T01 MTR_1g093350 48.598 107 35 3 1 107 92 178 1.57e-23 89.4
MsG0180001660.01.T01 MTR_1g040675 100.000 33 0 0 1 33 96 128 4.71e-17 72.4
MsG0180001660.01.T01 MTR_6g488150 40.000 115 50 4 1 108 141 243 9.67e-15 67.8
MsG0180001660.01.T01 MTR_2g101500 38.739 111 55 2 1 107 213 314 3.07e-13 64.3
MsG0180001660.01.T01 MTR_8g067530 39.450 109 59 2 1 108 243 345 7.33e-13 63.5
MsG0180001660.01.T01 MTR_5g030710 36.697 109 60 3 1 107 222 323 4.14e-12 61.2
MsG0180001660.01.T01 MTR_8g103030 35.965 114 55 3 1 107 179 281 1.72e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001660.01.T01 AT1G04240 43.243 111 43 2 1 111 99 189 3.56e-21 83.6
MsG0180001660.01.T01 AT1G04240 44.144 111 42 2 1 111 199 289 1.92e-20 83.6
MsG0180001660.01.T01 AT4G14560 41.346 104 41 2 1 104 81 164 5.71e-18 74.7
MsG0180001660.01.T01 AT3G23030 39.640 111 47 2 1 111 84 174 5.56e-17 72.4
MsG0180001660.01.T01 AT3G23030 39.640 111 47 2 1 111 171 261 1.46e-16 72.8
MsG0180001660.01.T01 AT4G29080 41.284 109 57 2 1 108 192 294 2.30e-14 67.4
MsG0180001660.01.T01 AT3G23050 38.889 108 59 2 1 108 131 231 1.50e-13 64.7
MsG0180001660.01.T01 AT5G65670 36.697 109 62 2 1 108 223 325 2.62e-11 58.9
MsG0180001660.01.T01 AT5G65670 36.364 110 61 3 1 108 223 325 4.02e-11 58.5
MsG0180001660.01.T01 AT2G22670 34.513 113 61 3 1 109 206 309 5.46e-11 58.2
MsG0180001660.01.T01 AT2G22670 34.513 113 61 3 1 109 206 309 5.46e-11 58.2

Find 56 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATCTGTTTCAATTTCTA+AGG 0.274640 1:+24841352 MsG0180001660.01.T01:five_prime_UTR
TAACAGACAAACAATCAAAT+TGG 0.298976 1:-24842805 None:intergenic
TCTAGAGCTTTGAGAAGTTC+TGG 0.300281 1:-24841796 None:intergenic
TGGTCTGATGGTATTGGCTT+GGG 0.304065 1:+24842586 MsG0180001660.01.T01:CDS
GGCACAGAAGCTAGAGGTTT+GGG 0.319290 1:+24842912 MsG0180001660.01.T01:CDS
AGTCAATCTTTCTAAGATAA+GGG 0.338441 1:-24841753 None:intergenic
AAGATTGACTTGAGGATCTA+TGG 0.344542 1:+24841766 MsG0180001660.01.T01:CDS
TTGGGTTGGTCTGATGGTAT+TGG 0.346687 1:+24842580 MsG0180001660.01.T01:CDS
GGCCACCAATTAGGTCTTAC+AGG 0.362405 1:+24841670 MsG0180001660.01.T01:five_prime_UTR
GATCCTCTAGAACTAATGTT+TGG 0.381424 1:-24842783 None:intergenic
CAAGGCAACTGAGCTTAGAT+TGG 0.382816 1:+24841242 MsG0180001660.01.T01:five_prime_UTR
TAGTAGGGTGGCCACCAATT+AGG 0.390633 1:+24841661 MsG0180001660.01.T01:five_prime_UTR
TTGGTCTGATGGTATTGGCT+TGG 0.396988 1:+24842585 MsG0180001660.01.T01:CDS
TAAAACTTACTTGGCAGGAG+GGG 0.402234 1:-24841416 None:intergenic
CATAAGCAAGATGGAATTCA+AGG 0.408971 1:+24841224 MsG0180001660.01.T01:five_prime_UTR
CTTCTTTGAGATGTTAAAAG+AGG 0.413234 1:-24841122 None:intergenic
AAGTCAATCTTTCTAAGATA+AGG 0.419964 1:-24841754 None:intergenic
AGGCACAGAAGCTAGAGGTT+TGG 0.423043 1:+24842911 MsG0180001660.01.T01:CDS
GAAGCTAGAGGTTTGGGTTG+TGG 0.426186 1:+24842918 MsG0180001660.01.T01:CDS
TTGATTAAAACTTACTTGGC+AGG 0.428702 1:-24841421 None:intergenic
TATTGCAGGGCAAAGATAGT+AGG 0.441299 1:+24841645 MsG0180001660.01.T01:intron
ACCCACTTGGGTTGGTCTGA+TGG 0.445909 1:+24842574 MsG0180001660.01.T01:CDS
AAAACTTACTTGGCAGGAGG+GGG 0.469417 1:-24841415 None:intergenic
AAGGCAACTGAGCTTAGATT+GGG 0.478858 1:+24841243 MsG0180001660.01.T01:five_prime_UTR
GGTCTGATGGTATTGGCTTG+GGG 0.480579 1:+24842587 MsG0180001660.01.T01:CDS
ACAGATTCTTCAGAAGTTTG+AGG 0.488351 1:-24841338 None:intergenic
TTACTCTAACCCACTTGGGT+TGG 0.528627 1:+24842566 MsG0180001660.01.T01:CDS
GATTACCAGGACAGATGAAA+AGG 0.532966 1:+24841265 MsG0180001660.01.T01:five_prime_UTR
TTCCTGTAAGACCTAATTGG+TGG 0.535956 1:-24841672 None:intergenic
AGCACTTACTCTAACCCACT+TGG 0.537629 1:+24842561 MsG0180001660.01.T01:CDS
GAGCTTAGATTGGGATTACC+AGG 0.557436 1:+24841252 MsG0180001660.01.T01:five_prime_UTR
TGTAACAATTGTGTGAAAGT+AGG 0.559942 1:-24841094 None:intergenic
CTATGTAAAGTGAGCATGGA+TGG 0.568891 1:+24841727 MsG0180001660.01.T01:exon
GTCAATCTTTCTAAGATAAG+GGG 0.570265 1:-24841752 None:intergenic
ACCTATGGTCAATTTGAACA+TGG 0.570995 1:-24841821 None:intergenic
TTAAAACTTACTTGGCAGGA+GGG 0.576091 1:-24841417 None:intergenic
ATTGCAGGGCAAAGATAGTA+GGG 0.580888 1:+24841646 MsG0180001660.01.T01:intron
TTGCAAGATGCTGAAGTTGG+TGG 0.588995 1:+24841701 MsG0180001660.01.T01:five_prime_UTR
ATCTTAGAAAGATTGACTTG+AGG 0.591443 1:+24841758 MsG0180001660.01.T01:CDS
GCTCCAAACATTAGTTCTAG+AGG 0.591906 1:+24842780 MsG0180001660.01.T01:CDS
ACCATGTTCAAATTGACCAT+AGG 0.594986 1:+24841820 MsG0180001660.01.T01:CDS
ACTTTGCAAGATGCTGAAGT+TGG 0.595544 1:+24841698 MsG0180001660.01.T01:five_prime_UTR
ATTAAAACTTACTTGGCAGG+AGG 0.597037 1:-24841418 None:intergenic
GGATCTATGTAAAGTGAGCA+TGG 0.599005 1:+24841723 MsG0180001660.01.T01:exon
GCACTTACTCTAACCCACTT+GGG 0.600540 1:+24842562 MsG0180001660.01.T01:CDS
TGCAAGATGCTGAAGTTGGT+GGG 0.610809 1:+24841702 MsG0180001660.01.T01:five_prime_UTR
AAACTTACTTGGCAGGAGGG+GGG 0.612468 1:-24841414 None:intergenic
AAGGAGATGAAAACAATACA+TGG 0.630474 1:+24841284 MsG0180001660.01.T01:five_prime_UTR
ACCATCAGACCAACCCAAGT+GGG 0.641954 1:-24842575 None:intergenic
AAAAGACTAAGAATCATGAA+AGG 0.643848 1:+24842891 MsG0180001660.01.T01:CDS
TACCATCAGACCAACCCAAG+TGG 0.651883 1:-24842576 None:intergenic
TTCAAATGATGATCAGCATG+TGG 0.651916 1:+24841376 MsG0180001660.01.T01:five_prime_UTR
GTGTGAAAGTAGGAAATGCA+AGG 0.671895 1:-24841084 None:intergenic
ATGAAAGGCACAGAAGCTAG+AGG 0.675055 1:+24842906 MsG0180001660.01.T01:CDS
ATTGACTTGAGGATCTATGG+AGG 0.689707 1:+24841769 MsG0180001660.01.T01:CDS
GCAGGGCAAAGATAGTAGGG+TGG 0.730499 1:+24841649 MsG0180001660.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTTGTTTTTTGTTT+TGG + Chr1:24841854-24841873 MsG0180001660.01.T01:intron 10.0%
!!! TATTTTTGTAATTGAATTAG+AGG + Chr1:24841196-24841215 MsG0180001660.01.T01:five_prime_UTR 15.0%
!! AAATCTTAATCATATGATTG+CGG + Chr1:24841995-24842014 MsG0180001660.01.T01:intron 20.0%
!!! TATAGTCACTATAAAGTTTT+AGG - Chr1:24841176-24841195 None:intergenic 20.0%
! AAAAGACTAAGAATCATGAA+AGG + Chr1:24842891-24842910 MsG0180001660.01.T01:CDS 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + Chr1:24841453-24841472 MsG0180001660.01.T01:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + Chr1:24841632-24841651 MsG0180001660.01.T01:intron 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + Chr1:24841352-24841371 MsG0180001660.01.T01:five_prime_UTR 25.0%
! CTTCTTGATTAAAACTTACT+TGG - Chr1:24841428-24841447 None:intergenic 25.0%
! GATAAACTGAAAACAACTTA+TGG - Chr1:24842458-24842477 None:intergenic 25.0%
! TAACAGACAAACAATCAAAT+TGG - Chr1:24842808-24842827 None:intergenic 25.0%
! TAATTTGATGTTGATATTGC+AGG + Chr1:24841631-24841650 MsG0180001660.01.T01:intron 25.0%
! TCAAATAAGCTAATCAAAAC+AGG - Chr1:24842362-24842381 None:intergenic 25.0%
!! TTTTATCTGTATCTTACCTA+TGG - Chr1:24841839-24841858 None:intergenic 25.0%
!!! AAGTCAATCTTTCTAAGATA+AGG - Chr1:24841757-24841776 None:intergenic 25.0%
!!! AGTCAATCTTTCTAAGATAA+GGG - Chr1:24841756-24841775 None:intergenic 25.0%
!!! CAAGAATTTTTTTGTTTGTG+TGG + Chr1:24841584-24841603 MsG0180001660.01.T01:intron 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + Chr1:24841426-24841445 MsG0180001660.01.T01:intron 25.0%
!!! GCTTATTTGAGTTTATCTTT+TGG + Chr1:24842372-24842391 MsG0180001660.01.T01:intron 25.0%
!!! TAATTTTAATAGTCTGCGAT+CGG + Chr1:24842755-24842774 MsG0180001660.01.T01:intron 25.0%
AAGGAGATGAAAACAATACA+TGG + Chr1:24841284-24841303 MsG0180001660.01.T01:five_prime_UTR 30.0%
AGATAAAGCAAACACACAAA+TGG - Chr1:24842262-24842281 None:intergenic 30.0%
CTGAAAACAACTTATGGTTA+TGG - Chr1:24842452-24842471 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - Chr1:24841097-24841116 None:intergenic 30.0%
TTGATTAAAACTTACTTGGC+AGG - Chr1:24841424-24841443 None:intergenic 30.0%
TTTATTGTGGTGAAACTAGT+TGG + Chr1:24842074-24842093 MsG0180001660.01.T01:intron 30.0%
! AATGCAAGGTTGTGTTTTAT+AGG - Chr1:24841073-24841092 None:intergenic 30.0%
! ATTATTCCTGGTGTCAATTT+GGG + Chr1:24842646-24842665 MsG0180001660.01.T01:intron 30.0%
! ATTCTGAAAGAGAGGTTATA+AGG + Chr1:24842153-24842172 MsG0180001660.01.T01:intron 30.0%
! TTCTGAAAGAGAGGTTATAA+GGG + Chr1:24842154-24842173 MsG0180001660.01.T01:intron 30.0%
!! AGTTATGTATAGACTAGTCT+TGG + Chr1:24842050-24842069 MsG0180001660.01.T01:intron 30.0%
!! ATCTTAGAAAGATTGACTTG+AGG + Chr1:24841758-24841777 MsG0180001660.01.T01:CDS 30.0%
!! CTTCTTTGAGATGTTAAAAG+AGG - Chr1:24841125-24841144 None:intergenic 30.0%
!! GTCAATCTTTCTAAGATAAG+GGG - Chr1:24841755-24841774 None:intergenic 30.0%
!!! GAAATTGTGCTTTGTTTTTC+AGG + Chr1:24842125-24842144 MsG0180001660.01.T01:intron 30.0%
ACAGATTCTTCAGAAGTTTG+AGG - Chr1:24841341-24841360 None:intergenic 35.0%
ACCATGTTCAAATTGACCAT+AGG + Chr1:24841820-24841839 MsG0180001660.01.T01:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - Chr1:24841824-24841843 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - Chr1:24841421-24841440 None:intergenic 35.0%
CATAAGCAAGATGGAATTCA+AGG + Chr1:24841224-24841243 MsG0180001660.01.T01:five_prime_UTR 35.0%
GACTGATGTAGTCTCAATTA+TGG + Chr1:24841942-24841961 MsG0180001660.01.T01:intron 35.0%
TTAAAACTTACTTGGCAGGA+GGG - Chr1:24841420-24841439 None:intergenic 35.0%
TTAAATTGCAATCGCGTCTA+GGG + Chr1:24841885-24841904 MsG0180001660.01.T01:intron 35.0%
TTCAAATGATGATCAGCATG+TGG + Chr1:24841376-24841395 MsG0180001660.01.T01:five_prime_UTR 35.0%
TTCCCTAAACTTTCTCAAAG+AGG - Chr1:24842414-24842433 None:intergenic 35.0%
TTTAAATTGCAATCGCGTCT+AGG + Chr1:24841884-24841903 MsG0180001660.01.T01:intron 35.0%
! AGCCTCTTTGAGAAAGTTTA+GGG + Chr1:24842409-24842428 MsG0180001660.01.T01:intron 35.0%
! GAATCTTTTGTCTCATCAAG+AGG - Chr1:24841565-24841584 None:intergenic 35.0%
! GATTATTCCTGGTGTCAATT+TGG + Chr1:24842645-24842664 MsG0180001660.01.T01:intron 35.0%
! GTTTTCCTGTAAGACCTAAT+TGG - Chr1:24841678-24841697 None:intergenic 35.0%
!! AAGATTGACTTGAGGATCTA+TGG + Chr1:24841766-24841785 MsG0180001660.01.T01:CDS 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - Chr1:24842889-24842908 None:intergenic 35.0%
!! GATCCTCTAGAACTAATGTT+TGG - Chr1:24842786-24842805 None:intergenic 35.0%
!!! GACTAGTCTTGGTTTTATTG+TGG + Chr1:24842061-24842080 MsG0180001660.01.T01:intron 35.0%
AAGGCAACTGAGCTTAGATT+GGG + Chr1:24841243-24841262 MsG0180001660.01.T01:five_prime_UTR 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + Chr1:24841698-24841717 MsG0180001660.01.T01:five_prime_UTR 40.0%
AGTCATTTCATCGACCATCA+TGG - Chr1:24842493-24842512 None:intergenic 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + Chr1:24841646-24841665 MsG0180001660.01.T01:intron 40.0%
CTATGTAAAGTGAGCATGGA+TGG + Chr1:24841727-24841746 MsG0180001660.01.T01:exon 40.0%
GATTACCAGGACAGATGAAA+AGG + Chr1:24841265-24841284 MsG0180001660.01.T01:five_prime_UTR 40.0%
GGATCTATGTAAAGTGAGCA+TGG + Chr1:24841723-24841742 MsG0180001660.01.T01:exon 40.0%
GTAGCAGATAGTTCGATTGT+TGG + Chr1:24842336-24842355 MsG0180001660.01.T01:intron 40.0%
GTCTTAGGTTCGATTATTCC+TGG + Chr1:24842634-24842653 MsG0180001660.01.T01:intron 40.0%
GTGTGAAAGTAGGAAATGCA+AGG - Chr1:24841087-24841106 None:intergenic 40.0%
TAAAACTTACTTGGCAGGAG+GGG - Chr1:24841419-24841438 None:intergenic 40.0%
TAATCGAACCTAAGACCTTG+AGG - Chr1:24842630-24842649 None:intergenic 40.0%
TACCATAAAGCCAACTTCAG+AGG - Chr1:24842319-24842338 None:intergenic 40.0%
TACTACCATGCAGCTGTATA+GGG - Chr1:24841480-24841499 None:intergenic 40.0%
TATACAGCTGCATGGTAGTA+CGG + Chr1:24841480-24841499 MsG0180001660.01.T01:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + Chr1:24841645-24841664 MsG0180001660.01.T01:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - Chr1:24841675-24841694 None:intergenic 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + Chr1:24842145-24842164 MsG0180001660.01.T01:intron 40.0%
! GAGCCTCTTTGAGAAAGTTT+AGG + Chr1:24842408-24842427 MsG0180001660.01.T01:intron 40.0%
! GAGGTTTTGCATAAGCAAGA+TGG + Chr1:24841215-24841234 MsG0180001660.01.T01:five_prime_UTR 40.0%
!! ATCCTCTGAAGTTGGCTTTA+TGG + Chr1:24842314-24842333 MsG0180001660.01.T01:intron 40.0%
!! ATTGACTTGAGGATCTATGG+AGG + Chr1:24841769-24841788 MsG0180001660.01.T01:CDS 40.0%
!! GAACTTAGATCCTCTGAAGT+TGG + Chr1:24842306-24842325 MsG0180001660.01.T01:intron 40.0%
!! GCTCCAAACATTAGTTCTAG+AGG + Chr1:24842780-24842799 MsG0180001660.01.T01:CDS 40.0%
!! TCTAGAGCTTTGAGAAGTTC+TGG - Chr1:24841799-24841818 None:intergenic 40.0%
AAAACTTACTTGGCAGGAGG+GGG - Chr1:24841418-24841437 None:intergenic 45.0%
AGCACTTACTCTAACCCACT+TGG + Chr1:24842561-24842580 MsG0180001660.01.T01:CDS 45.0%
ATACGTACTGCAACCGTTCA+GGG + Chr1:24841538-24841557 MsG0180001660.01.T01:intron 45.0%
ATGAAGACAAGGATGGTGAC+TGG + Chr1:24842197-24842216 MsG0180001660.01.T01:intron 45.0%
CAAGGCAACTGAGCTTAGAT+TGG + Chr1:24841242-24841261 MsG0180001660.01.T01:five_prime_UTR 45.0%
CATCGACCATCATGGAAAAC+TGG - Chr1:24842485-24842504 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + Chr1:24842190-24842209 MsG0180001660.01.T01:intron 45.0%
CCATCCTTGTCTTCATAGGT+TGG - Chr1:24842193-24842212 None:intergenic 45.0%
GAGCTTAGATTGGGATTACC+AGG + Chr1:24841252-24841271 MsG0180001660.01.T01:five_prime_UTR 45.0%
GCACTTACTCTAACCCACTT+GGG + Chr1:24842562-24842581 MsG0180001660.01.T01:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + Chr1:24842222-24842241 MsG0180001660.01.T01:intron 45.0%
GGATAGAGAACTTACTCCCA+TGG - Chr1:24842241-24842260 None:intergenic 45.0%
GTACTACCATGCAGCTGTAT+AGG - Chr1:24841481-24841500 None:intergenic 45.0%
GTCACCATCCTTGTCTTCAT+AGG - Chr1:24842197-24842216 None:intergenic 45.0%
TGCACCAACCTATGAAGACA+AGG + Chr1:24842186-24842205 MsG0180001660.01.T01:intron 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + Chr1:24842221-24842240 MsG0180001660.01.T01:intron 45.0%
TTACTCTAACCCACTTGGGT+TGG + Chr1:24842566-24842585 MsG0180001660.01.T01:CDS 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + Chr1:24841701-24841720 MsG0180001660.01.T01:five_prime_UTR 45.0%
! ATGAAAGGCACAGAAGCTAG+AGG + Chr1:24842906-24842925 MsG0180001660.01.T01:CDS 45.0%
! ATTCCTGGTGTCAATTTGGG+TGG + Chr1:24842649-24842668 MsG0180001660.01.T01:intron 45.0%
! CATCTCCTTTTCATCTGTCC+TGG - Chr1:24841273-24841292 None:intergenic 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + Chr1:24841702-24841721 MsG0180001660.01.T01:five_prime_UTR 45.0%
! TTCCTGGTGTCAATTTGGGT+GGG + Chr1:24842650-24842669 MsG0180001660.01.T01:intron 45.0%
!! TGGTCTGATGGTATTGGCTT+GGG + Chr1:24842586-24842605 MsG0180001660.01.T01:CDS 45.0%
!! TTGGGTTGGTCTGATGGTAT+TGG + Chr1:24842580-24842599 MsG0180001660.01.T01:CDS 45.0%
!! TTGGTCTGATGGTATTGGCT+TGG + Chr1:24842585-24842604 MsG0180001660.01.T01:CDS 45.0%
AAACTTACTTGGCAGGAGGG+GGG - Chr1:24841417-24841436 None:intergenic 50.0%
ACCATCAGACCAACCCAAGT+GGG - Chr1:24842578-24842597 None:intergenic 50.0%
ACCATCATGGAAAACTGGCG+AGG - Chr1:24842480-24842499 None:intergenic 50.0%
AGGCACAGAAGCTAGAGGTT+TGG + Chr1:24842911-24842930 MsG0180001660.01.T01:CDS 50.0%
CATACGTACTGCAACCGTTC+AGG + Chr1:24841537-24841556 MsG0180001660.01.T01:intron 50.0%
CTCATCAAGAGGACCCTGAA+CGG - Chr1:24841554-24841573 None:intergenic 50.0%
CTGAACGGTTGCAGTACGTA+TGG - Chr1:24841539-24841558 None:intergenic 50.0%
GATGGTGACTGGATGCTAGT+TGG + Chr1:24842208-24842227 MsG0180001660.01.T01:intron 50.0%
GGCACAGAAGCTAGAGGTTT+GGG + Chr1:24842912-24842931 MsG0180001660.01.T01:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + Chr1:24841670-24841689 MsG0180001660.01.T01:five_prime_UTR 50.0%
TACCATCAGACCAACCCAAG+TGG - Chr1:24842579-24842598 None:intergenic 50.0%
TAGTAGGGTGGCCACCAATT+AGG + Chr1:24841661-24841680 MsG0180001660.01.T01:five_prime_UTR 50.0%
TCGAACCTAAGACCTTGAGG+AGG - Chr1:24842627-24842646 None:intergenic 50.0%
! TCCTCGCCAGTTTTCCATGA+TGG + Chr1:24842476-24842495 MsG0180001660.01.T01:intron 50.0%
!! ATGGTATTGGCTTGGGGTCT+GGG + Chr1:24842593-24842612 MsG0180001660.01.T01:intron 50.0%
!! GAAGCTAGAGGTTTGGGTTG+TGG + Chr1:24842918-24842937 MsG0180001660.01.T01:CDS 50.0%
!! GGTCTGATGGTATTGGCTTG+GGG + Chr1:24842587-24842606 MsG0180001660.01.T01:CDS 50.0%
AGCCCACCCAAATTGACACC+AGG - Chr1:24842655-24842674 None:intergenic 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + Chr1:24841649-24841668 MsG0180001660.01.T01:intron 55.0%
GTGCTCCTCCTCAAGGTCTT+AGG + Chr1:24842619-24842638 MsG0180001660.01.T01:intron 55.0%
GTGGACCCTATACAGCTGCA+TGG + Chr1:24841472-24841491 MsG0180001660.01.T01:intron 55.0%
!! ACCCACTTGGGTTGGTCTGA+TGG + Chr1:24842574-24842593 MsG0180001660.01.T01:CDS 55.0%
!! GATGGTATTGGCTTGGGGTC+TGG + Chr1:24842592-24842611 MsG0180001660.01.T01:intron 55.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + Chr1:24842612-24842631 MsG0180001660.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 24841052 24842947 24841052 ID=MsG0180001660.01;Name=MsG0180001660.01
Chr1 mRNA 24841052 24842947 24841052 ID=MsG0180001660.01.T01;Parent=MsG0180001660.01;Name=MsG0180001660.01.T01;_AED=0.35;_eAED=0.48;_QI=466|0.33|0.5|1|0.33|0|4|0|111
Chr1 exon 24841052 24841428 24841052 ID=MsG0180001660.01.T01:exon:40808;Parent=MsG0180001660.01.T01
Chr1 exon 24841653 24841841 24841653 ID=MsG0180001660.01.T01:exon:40809;Parent=MsG0180001660.01.T01
Chr1 exon 24842554 24842608 24842554 ID=MsG0180001660.01.T01:exon:40810;Parent=MsG0180001660.01.T01
Chr1 exon 24842767 24842947 24842767 ID=MsG0180001660.01.T01:exon:40811;Parent=MsG0180001660.01.T01
Chr1 five_prime_UTR 24841052 24841428 24841052 ID=MsG0180001660.01.T01:five_prime_utr;Parent=MsG0180001660.01.T01
Chr1 five_prime_UTR 24841653 24841741 24841653 ID=MsG0180001660.01.T01:five_prime_utr;Parent=MsG0180001660.01.T01
Chr1 CDS 24841742 24841841 24841742 ID=MsG0180001660.01.T01:cds;Parent=MsG0180001660.01.T01
Chr1 CDS 24842554 24842608 24842554 ID=MsG0180001660.01.T01:cds;Parent=MsG0180001660.01.T01
Chr1 CDS 24842767 24842947 24842767 ID=MsG0180001660.01.T01:cds;Parent=MsG0180001660.01.T01
Gene Sequence

>MsG0180001660.01.T01

ATGGATGGTGCCCCTTATCTTAGAAAGATTGACTTGAGGATCTATGGAGGCTATCCAGAACTTCTCAAAGCTCTAGAAACCATGTTCAAATTGACCATAGTTTTAAAAGCACTTACTCTAACCCACTTGGGTTGGTCTGATGGTATTGGCTTGGGTCTGCGATCGGCTGCTCCAAACATTAGTTCTAGAGGATCCAATTTGATTGTTTGTCTGTTAGATGTTCATATTCAGAAACTCATAGAACTTGCTTTTATTTGCAGCATGTTTGTGACTTCCTGCAAAAGACTAAGAATCATGAAAGGCACAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA
Protein sequence

>MsG0180001660.01.T01

MDGAPYLRKIDLRIYGGYPELLKALETMFKLTIVLKALTLTHLGWSDGIGLGLRSAAPNISSRGSNLIVCLLDVHIQKLIELAFICSMFVTSCKRLRIMKGTEARGLGCGV*