Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001798.01.T01 | GAU11768.1 | 83.077 | 585 | 46 | 6 | 1 | 549 | 1 | 568 | 0 | 962 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001798.01.T01 | Q9SW96 | 63.715 | 576 | 178 | 5 | 1 | 549 | 1 | 572 | 0 | 762 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001798.01.T01 | A0A2K3PJ28 | 82.222 | 585 | 51 | 6 | 1 | 549 | 1 | 568 | 0.0 | 959 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180001798.01 | MsG0580029400.01 | PPI |
| MsG0580029403.01 | MsG0180001798.01 | PPI |
| MsG0180001798.01 | MsG0580029413.01 | PPI |
| MsG0580029399.01 | MsG0180001798.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001798.01.T01 | MTR_7g101050 | 81.113 | 593 | 51 | 7 | 1 | 549 | 1 | 576 | 0.0 | 944 |
| MsG0180001798.01.T01 | MTR_8g102050 | 84.087 | 553 | 63 | 4 | 19 | 549 | 2 | 551 | 0.0 | 925 |
| MsG0180001798.01.T01 | MTR_4g100920 | 49.632 | 544 | 216 | 10 | 12 | 549 | 55 | 546 | 5.82e-177 | 510 |
| MsG0180001798.01.T01 | MTR_8g011530 | 43.652 | 575 | 279 | 12 | 5 | 548 | 72 | 632 | 2.56e-154 | 456 |
| MsG0180001798.01.T01 | MTR_4g100920 | 45.455 | 440 | 182 | 10 | 12 | 445 | 55 | 442 | 1.81e-120 | 363 |
| MsG0180001798.01.T01 | MTR_1g014140 | 30.961 | 281 | 175 | 8 | 272 | 546 | 271 | 538 | 2.43e-28 | 119 |
| MsG0180001798.01.T01 | MTR_5g028360 | 30.249 | 281 | 177 | 8 | 272 | 546 | 319 | 586 | 3.75e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001798.01.T01 | AT5G56680 | 63.715 | 576 | 178 | 5 | 1 | 549 | 1 | 572 | 0.0 | 762 |
| MsG0180001798.01.T01 | AT1G70980 | 63.763 | 574 | 180 | 5 | 1 | 549 | 1 | 571 | 0.0 | 749 |
| MsG0180001798.01.T01 | AT4G17300 | 49.906 | 531 | 211 | 9 | 25 | 549 | 86 | 567 | 6.79e-176 | 508 |
| MsG0180001798.01.T01 | AT4G17300 | 49.906 | 531 | 211 | 9 | 25 | 549 | 106 | 587 | 1.17e-175 | 509 |
| MsG0180001798.01.T01 | AT3G07420 | 45.347 | 505 | 245 | 7 | 68 | 548 | 140 | 637 | 9.51e-148 | 439 |
| MsG0180001798.01.T01 | AT3G07420 | 42.037 | 383 | 192 | 6 | 68 | 426 | 140 | 516 | 6.11e-93 | 295 |
| MsG0180001798.01.T01 | AT4G31180 | 33.096 | 281 | 169 | 8 | 272 | 546 | 288 | 555 | 2.73e-31 | 128 |
| MsG0180001798.01.T01 | AT4G31180 | 33.096 | 281 | 169 | 8 | 272 | 546 | 288 | 555 | 2.73e-31 | 128 |
| MsG0180001798.01.T01 | AT1G68420 | 63.636 | 77 | 28 | 0 | 302 | 378 | 1 | 77 | 1.27e-28 | 109 |
| MsG0180001798.01.T01 | AT4G26870 | 30.769 | 286 | 161 | 9 | 272 | 542 | 262 | 525 | 1.80e-28 | 119 |
| MsG0180001798.01.T01 | AT5G38750 | 33.537 | 164 | 66 | 4 | 18 | 178 | 4 | 127 | 2.46e-16 | 76.3 |
Find 134 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATATCCTTTGCCTAAA+AGG | 0.177868 | 1:+27158882 | MsG0180001798.01.T01:CDS |
| CCAGGCATTTGGCTGAATTT+TGG | 0.190908 | 1:+27159428 | MsG0180001798.01.T01:CDS |
| TCTTGAGGATATGCAATTTA+TGG | 0.198036 | 1:+27159549 | MsG0180001798.01.T01:CDS |
| CTTAGACAACTTGTTCTTAC+TGG | 0.233716 | 1:+27158746 | MsG0180001798.01.T01:CDS |
| CTTAGTAGTGTTTATACATT+TGG | 0.254231 | 1:+27159373 | MsG0180001798.01.T01:CDS |
| AATTTGAGAAAGAAGTAAAA+TGG | 0.264571 | 1:+27159692 | MsG0180001798.01.T01:CDS |
| TAGAATGGTTTGATACCTTT+TGG | 0.274490 | 1:-27159796 | None:intergenic |
| TATTATACTTCTCCTCTGTT+AGG | 0.306262 | 1:-27159747 | None:intergenic |
| TTGCATTGATCGTTTGAAAA+TGG | 0.308329 | 1:+27159591 | MsG0180001798.01.T01:CDS |
| TATCTCAAACTTCCTCATTC+TGG | 0.310783 | 1:+27158791 | MsG0180001798.01.T01:CDS |
| TTCTCACACTTCCAGGCATT+TGG | 0.323004 | 1:+27159417 | MsG0180001798.01.T01:CDS |
| TCCATCCTTTCGAGGAATAT+CGG | 0.324379 | 1:-27159263 | None:intergenic |
| TACCATTCATATGGCTTAAC+AGG | 0.325352 | 1:-27159955 | None:intergenic |
| GCCGTCTTCACGGCAGATTA+TGG | 0.326140 | 1:-27158573 | None:intergenic |
| AAGTCTGCAAACGCGATTTC+AGG | 0.337547 | 1:-27159460 | None:intergenic |
| AACGATAACTTGAAGGTTAC+CGG | 0.339980 | 1:-27158705 | None:intergenic |
| TCCATCGTTCAATTCCAAAA+AGG | 0.340581 | 1:-27158675 | None:intergenic |
| ATGGCTGATAAGGTTGATAA+AGG | 0.344858 | 1:+27159568 | MsG0180001798.01.T01:CDS |
| CCAAAGGTTGGAGAGTTAAT+TGG | 0.360690 | 1:+27159871 | MsG0180001798.01.T01:CDS |
| TACAGAAGCCGTGGAAATAC+TGG | 0.367856 | 1:+27159645 | MsG0180001798.01.T01:CDS |
| CAGAGAATTCTCACACTTCC+AGG | 0.368101 | 1:+27159410 | MsG0180001798.01.T01:CDS |
| ATTTGAGAAAGAAGTAAAAT+GGG | 0.373720 | 1:+27159693 | MsG0180001798.01.T01:CDS |
| AGCAGATATCGTGTTGGTTC+TGG | 0.374309 | 1:-27158948 | None:intergenic |
| TGAAATCGCGTTTGCAGACT+TGG | 0.375982 | 1:+27159462 | MsG0180001798.01.T01:CDS |
| TGCCGTGAAGACGGCGGATC+AGG | 0.396893 | 1:+27158581 | MsG0180001798.01.T01:CDS |
| GGATATTTAGCAGGATCAAC+AGG | 0.402646 | 1:-27158869 | None:intergenic |
| TCACTGTTCCATACCGCCTT+AGG | 0.403268 | 1:-27159984 | None:intergenic |
| AAACATGCTGGATTCGGTCT+TGG | 0.405121 | 1:+27160006 | MsG0180001798.01.T01:CDS |
| TATGCAATTTATGGCTGATA+AGG | 0.406440 | 1:+27159558 | MsG0180001798.01.T01:CDS |
| AGATGGTTACCGTGGATAAC+TGG | 0.415706 | 1:-27158499 | None:intergenic |
| AACTTGAAGGTTACCGGCAC+AGG | 0.417890 | 1:-27158699 | None:intergenic |
| CGGCAGATTATGGATTGAAT+CGG | 0.418024 | 1:-27158563 | None:intergenic |
| GCGGTCGGAGAATTCAGCTT+TGG | 0.418114 | 1:-27158537 | None:intergenic |
| CCATCCTTTCGAGGAATATC+GGG | 0.420348 | 1:-27159262 | None:intergenic |
| GGAACTTGTGTAGTTGTTGA+TGG | 0.422794 | 1:+27158767 | MsG0180001798.01.T01:CDS |
| AGGTCAATGTACCATTCATA+TGG | 0.423150 | 1:-27159964 | None:intergenic |
| TTAAGGAGAAGGGGATAAGA+AGG | 0.425964 | 1:+27159128 | MsG0180001798.01.T01:CDS |
| CAATCAATAGTCGTGACAAT+TGG | 0.426024 | 1:-27159049 | None:intergenic |
| CCAATTAACTCTCCAACCTT+TGG | 0.429345 | 1:-27159871 | None:intergenic |
| CATCATAACGCTCCTCCCTT+TGG | 0.431653 | 1:-27159900 | None:intergenic |
| ATCGGAGGATGGGTGAAAAC+AGG | 0.431680 | 1:+27158626 | MsG0180001798.01.T01:CDS |
| TCCACCTTTCCATCCTTTCG+AGG | 0.439930 | 1:-27159271 | None:intergenic |
| CGGTCGGAGAATTCAGCTTT+GGG | 0.442054 | 1:-27158536 | None:intergenic |
| CCAAAATTCAGCCAAATGCC+TGG | 0.449352 | 1:-27159428 | None:intergenic |
| GATTCGGTCTTGGCTTTGAA+AGG | 0.456155 | 1:+27160016 | MsG0180001798.01.T01:CDS |
| AACAGGAAGAAAAGCAGATA+AGG | 0.467248 | 1:+27158643 | MsG0180001798.01.T01:CDS |
| TCCATAATCTGCCGTGAAGA+CGG | 0.470318 | 1:+27158572 | MsG0180001798.01.T01:CDS |
| ACAGTGAAACATGCTGGATT+CGG | 0.470528 | 1:+27160000 | MsG0180001798.01.T01:CDS |
| AAGCTTCAACGATAACTTGA+AGG | 0.473651 | 1:-27158712 | None:intergenic |
| AACCTGATCCGCCGTCTTCA+CGG | 0.474312 | 1:-27158583 | None:intergenic |
| ATTCCCTTCCCACGATATCC+TGG | 0.485303 | 1:+27160081 | MsG0180001798.01.T01:CDS |
| GATCGAGCTTCGCGCTGAAG+AGG | 0.487208 | 1:+27158832 | MsG0180001798.01.T01:CDS |
| TTCTGTTTCGCTCCAGAATG+AGG | 0.487604 | 1:-27158803 | None:intergenic |
| TGTATATGTAAGTCGAATGA+AGG | 0.488290 | 1:-27159626 | None:intergenic |
| AATTCTCTGCTCGAAATGTC+GGG | 0.488819 | 1:-27159396 | None:intergenic |
| TTAGGCAAAGGATATTTAGC+AGG | 0.488927 | 1:-27158878 | None:intergenic |
| ATAGTCTATAATTATCCAAA+AGG | 0.495051 | 1:+27159781 | MsG0180001798.01.T01:CDS |
| CCTAGAGACAGTGGCTGCTA+TGG | 0.495878 | 1:+27159837 | MsG0180001798.01.T01:CDS |
| GGGAACCTCGTCGGAGGAGA+TGG | 0.500318 | 1:-27158516 | None:intergenic |
| GCTGAAGAGGTTCTTCATGT+TGG | 0.501465 | 1:+27158845 | MsG0180001798.01.T01:CDS |
| CCCGATATTCCTCGAAAGGA+TGG | 0.501652 | 1:+27159262 | MsG0180001798.01.T01:CDS |
| TTTCATAAATCTGCTCTGCC+AGG | 0.503281 | 1:-27160099 | None:intergenic |
| GGATAATTATAGACTATGAC+AGG | 0.507099 | 1:-27159775 | None:intergenic |
| CCATAGCAGCCACTGTCTCT+AGG | 0.509076 | 1:-27159837 | None:intergenic |
| ATCTGCAAAAGCAGATAAGA+AGG | 0.510339 | 1:+27159204 | MsG0180001798.01.T01:CDS |
| GAAGCTGTTGTTAAGGAGAA+GGG | 0.510646 | 1:+27159118 | MsG0180001798.01.T01:CDS |
| GAATTCTCTGCTCGAAATGT+CGG | 0.511450 | 1:-27159397 | None:intergenic |
| TCATTGAGGCGCATGTAGAA+TGG | 0.512501 | 1:-27159811 | None:intergenic |
| GACGGCGGATCAGGTTTAGC+AGG | 0.513325 | 1:+27158590 | MsG0180001798.01.T01:CDS |
| CTGGAAGAATCTGCGAAGAA+TGG | 0.514771 | 1:+27159664 | MsG0180001798.01.T01:CDS |
| TTGAACGATGGAACCTGTGC+CGG | 0.520799 | 1:+27158686 | MsG0180001798.01.T01:CDS |
| AAGCTGTTGTTAAGGAGAAG+GGG | 0.524459 | 1:+27159119 | MsG0180001798.01.T01:CDS |
| CGATGTTGAAGCTGTTGTTA+AGG | 0.528387 | 1:+27159111 | MsG0180001798.01.T01:CDS |
| GCAGGCAAGAAAGCTAGAAT+CGG | 0.528940 | 1:+27158608 | MsG0180001798.01.T01:CDS |
| TGAAGCTGTTGTTAAGGAGA+AGG | 0.529298 | 1:+27159117 | MsG0180001798.01.T01:CDS |
| TGTCATTCAACAAGGACTAA+AGG | 0.529353 | 1:+27159921 | MsG0180001798.01.T01:CDS |
| AATCGCGTTTGCAGACTTGG+AGG | 0.529982 | 1:+27159465 | MsG0180001798.01.T01:CDS |
| GGCAGATTATGGATTGAATC+GGG | 0.531948 | 1:-27158562 | None:intergenic |
| TACATTGACCTAAGGCGGTA+TGG | 0.532815 | 1:+27159976 | MsG0180001798.01.T01:CDS |
| AGAAAGCTAGAATCGGAGGA+TGG | 0.535348 | 1:+27158615 | MsG0180001798.01.T01:CDS |
| GATGTTCTTGTGCCAAAGGT+TGG | 0.542344 | 1:+27159859 | MsG0180001798.01.T01:CDS |
| ACAGGAAGAAAAGCAGATAA+GGG | 0.546042 | 1:+27158644 | MsG0180001798.01.T01:CDS |
| ACTATTGATTGCGAGGGTGC+TGG | 0.546380 | 1:+27159061 | MsG0180001798.01.T01:CDS |
| AAGGTTGGAGAGTTAATTGG+TGG | 0.550938 | 1:+27159874 | MsG0180001798.01.T01:CDS |
| AGATTCTTCCAGTATTTCCA+CGG | 0.551909 | 1:-27159653 | None:intergenic |
| TATGGATGTTCTTGTGCCAA+AGG | 0.553956 | 1:+27159855 | MsG0180001798.01.T01:CDS |
| AGTTAATTGGTGGAAGCCAA+AGG | 0.559685 | 1:+27159884 | MsG0180001798.01.T01:CDS |
| TCTGCTCTGCCAGGATATCG+TGG | 0.559764 | 1:-27160090 | None:intergenic |
| ACACGATATCTGCTGTTGCT+CGG | 0.565153 | 1:+27158957 | MsG0180001798.01.T01:CDS |
| TATGGAACAGTGAAACATGC+TGG | 0.566811 | 1:+27159994 | MsG0180001798.01.T01:CDS |
| ATTGCGAGGGTGCTGGTGAA+AGG | 0.569925 | 1:+27159068 | MsG0180001798.01.T01:CDS |
| TTCAGCTTTGGGAACCTCGT+CGG | 0.571743 | 1:-27158525 | None:intergenic |
| GAAAGCTAGAATCGGAGGAT+GGG | 0.575623 | 1:+27158616 | MsG0180001798.01.T01:CDS |
| GTATATGTAAGTCGAATGAA+GGG | 0.579832 | 1:-27159625 | None:intergenic |
| GGCAAGAAAGCTAGAATCGG+AGG | 0.582938 | 1:+27158611 | MsG0180001798.01.T01:CDS |
| GAAGGAGATTAGTGCTGCTG+AGG | 0.583715 | 1:+27159222 | MsG0180001798.01.T01:CDS |
| TGCCTGTTAAGCCATATGAA+TGG | 0.583784 | 1:+27159953 | MsG0180001798.01.T01:CDS |
| CTGCCAGGATATCGTGGGAA+GGG | 0.584465 | 1:-27160084 | None:intergenic |
| ATGAATGGTACATTGACCTA+AGG | 0.591028 | 1:+27159968 | MsG0180001798.01.T01:CDS |
| AAATCACGCAAAACTTCAAG+AGG | 0.593482 | 1:-27158911 | None:intergenic |
| GTTACTTGACAACTGTCTTG+AGG | 0.594479 | 1:+27159534 | MsG0180001798.01.T01:CDS |
| TCAGCCCGATATTCCTCGAA+AGG | 0.596319 | 1:+27159258 | MsG0180001798.01.T01:CDS |
| GTCACGACTATTGATTGCGA+GGG | 0.597022 | 1:+27159055 | MsG0180001798.01.T01:CDS |
| GTTAATTGGTGGAAGCCAAA+GGG | 0.599290 | 1:+27159885 | MsG0180001798.01.T01:CDS |
| GGTCGGACGGTGGTGATGAG+AGG | 0.605120 | 1:-27158478 | None:intergenic |
| ACCGTGGATAACTGGTCGGA+CGG | 0.609180 | 1:-27158491 | None:intergenic |
| TCCTCGAAAGGATGGAAAGG+TGG | 0.609590 | 1:+27159270 | MsG0180001798.01.T01:CDS |
| CTGTCTCTAGGTCGTCATTG+AGG | 0.610010 | 1:-27159825 | None:intergenic |
| GAAGGAGATTAGTGCTGCTG+TGG | 0.610064 | 1:+27159146 | MsG0180001798.01.T01:CDS |
| CGTTATGATGTCATTCAACA+AGG | 0.613502 | 1:+27159913 | MsG0180001798.01.T01:CDS |
| AGCTTTGGGAACCTCGTCGG+AGG | 0.618057 | 1:-27158522 | None:intergenic |
| TGTCACGACTATTGATTGCG+AGG | 0.620740 | 1:+27159054 | MsG0180001798.01.T01:CDS |
| TTTGAGAAAGAAGTAAAATG+GGG | 0.624348 | 1:+27159694 | MsG0180001798.01.T01:CDS |
| CTGCTCTGCCAGGATATCGT+GGG | 0.624533 | 1:-27160089 | None:intergenic |
| TTATGGATTGAATCGGGACG+CGG | 0.626083 | 1:-27158556 | None:intergenic |
| GGATTGAATCGGGACGCGGT+CGG | 0.630642 | 1:-27158552 | None:intergenic |
| AATGGTACATTGACCTAAGG+CGG | 0.633261 | 1:+27159971 | MsG0180001798.01.T01:CDS |
| TCTGCCAGGATATCGTGGGA+AGG | 0.640927 | 1:-27160085 | None:intergenic |
| TATTCCTCGAAAGGATGGAA+AGG | 0.646953 | 1:+27159267 | MsG0180001798.01.T01:CDS |
| ACTTACATATACAGAAGCCG+TGG | 0.654722 | 1:+27159636 | MsG0180001798.01.T01:CDS |
| ATAATCTGCCGTGAAGACGG+CGG | 0.657362 | 1:+27158575 | MsG0180001798.01.T01:CDS |
| GTGGATAACTGGTCGGACGG+TGG | 0.662379 | 1:-27158488 | None:intergenic |
| AGCAACAGCAGATATCGTGT+TGG | 0.663258 | 1:-27158954 | None:intergenic |
| ATATGTAAGTCGAATGAAGG+GGG | 0.666943 | 1:-27159623 | None:intergenic |
| ACCGTCCGACCAGTTATCCA+CGG | 0.669853 | 1:+27158490 | MsG0180001798.01.T01:CDS |
| AATTGGTGGAAGCCAAAGGG+AGG | 0.678168 | 1:+27159888 | MsG0180001798.01.T01:CDS |
| GTCGGAGGAGATGGTTACCG+TGG | 0.680559 | 1:-27158507 | None:intergenic |
| CAATGACGACCTAGAGACAG+TGG | 0.692832 | 1:+27159828 | MsG0180001798.01.T01:CDS |
| TATATGTAAGTCGAATGAAG+GGG | 0.702544 | 1:-27159624 | None:intergenic |
| GGTTACCGTGGATAACTGGT+CGG | 0.704375 | 1:-27158495 | None:intergenic |
| AATCACGCAAAACTTCAAGA+GGG | 0.718553 | 1:-27158910 | None:intergenic |
| GGTAACCATCTCCTCCGACG+AGG | 0.732671 | 1:+27158511 | MsG0180001798.01.T01:CDS |
| GCATGAAAGATACCTAACAG+AGG | 0.735677 | 1:+27159735 | MsG0180001798.01.T01:CDS |
| GGATGATATGAAGTGCGCTG+AGG | 0.752084 | 1:+27159486 | MsG0180001798.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGAGAAAGAAGTAAAA+TGG | + | Chr1:27159692-27159711 | MsG0180001798.01.T01:CDS | 20.0% |
| !! | ATAGTCTATAATTATCCAAA+AGG | + | Chr1:27159781-27159800 | MsG0180001798.01.T01:CDS | 20.0% |
| !! | ATTTGAGAAAGAAGTAAAAT+GGG | + | Chr1:27159693-27159712 | MsG0180001798.01.T01:CDS | 20.0% |
| ! | CTTAGTAGTGTTTATACATT+TGG | + | Chr1:27159373-27159392 | MsG0180001798.01.T01:CDS | 25.0% |
| ! | TTTGAGAAAGAAGTAAAATG+GGG | + | Chr1:27159694-27159713 | MsG0180001798.01.T01:CDS | 25.0% |
| CTAAATATCCTTTGCCTAAA+AGG | + | Chr1:27158882-27158901 | MsG0180001798.01.T01:CDS | 30.0% | |
| GGATAATTATAGACTATGAC+AGG | - | Chr1:27159778-27159797 | None:intergenic | 30.0% | |
| GTATATGTAAGTCGAATGAA+GGG | - | Chr1:27159628-27159647 | None:intergenic | 30.0% | |
| TATATGTAAGTCGAATGAAG+GGG | - | Chr1:27159627-27159646 | None:intergenic | 30.0% | |
| TATGCAATTTATGGCTGATA+AGG | + | Chr1:27159558-27159577 | MsG0180001798.01.T01:CDS | 30.0% | |
| TATTATACTTCTCCTCTGTT+AGG | - | Chr1:27159750-27159769 | None:intergenic | 30.0% | |
| TCTTGAGGATATGCAATTTA+TGG | + | Chr1:27159549-27159568 | MsG0180001798.01.T01:CDS | 30.0% | |
| TGTATATGTAAGTCGAATGA+AGG | - | Chr1:27159629-27159648 | None:intergenic | 30.0% | |
| ! | ATGTCAAATTTTTGTGTCAG+TGG | + | Chr1:27159512-27159531 | MsG0180001798.01.T01:CDS | 30.0% |
| ! | TAGAATGGTTTGATACCTTT+TGG | - | Chr1:27159799-27159818 | None:intergenic | 30.0% |
| ! | TTGCATTGATCGTTTGAAAA+TGG | + | Chr1:27159591-27159610 | MsG0180001798.01.T01:CDS | 30.0% |
| !! | CATACATTTTTCAACAAGCA+TGG | + | Chr1:27159007-27159026 | MsG0180001798.01.T01:CDS | 30.0% |
| AAATCACGCAAAACTTCAAG+AGG | - | Chr1:27158914-27158933 | None:intergenic | 35.0% | |
| AACAGGAAGAAAAGCAGATA+AGG | + | Chr1:27158643-27158662 | MsG0180001798.01.T01:CDS | 35.0% | |
| AACGATAACTTGAAGGTTAC+CGG | - | Chr1:27158708-27158727 | None:intergenic | 35.0% | |
| AAGCTTCAACGATAACTTGA+AGG | - | Chr1:27158715-27158734 | None:intergenic | 35.0% | |
| AATCACGCAAAACTTCAAGA+GGG | - | Chr1:27158913-27158932 | None:intergenic | 35.0% | |
| ACAGGAAGAAAAGCAGATAA+GGG | + | Chr1:27158644-27158663 | MsG0180001798.01.T01:CDS | 35.0% | |
| AGATTCTTCCAGTATTTCCA+CGG | - | Chr1:27159656-27159675 | None:intergenic | 35.0% | |
| AGGTCAATGTACCATTCATA+TGG | - | Chr1:27159967-27159986 | None:intergenic | 35.0% | |
| ATATGTAAGTCGAATGAAGG+GGG | - | Chr1:27159626-27159645 | None:intergenic | 35.0% | |
| ATCTGCAAAAGCAGATAAGA+AGG | + | Chr1:27159204-27159223 | MsG0180001798.01.T01:CDS | 35.0% | |
| ATGAATGGTACATTGACCTA+AGG | + | Chr1:27159968-27159987 | MsG0180001798.01.T01:CDS | 35.0% | |
| CAATCAATAGTCGTGACAAT+TGG | - | Chr1:27159052-27159071 | None:intergenic | 35.0% | |
| CGTTATGATGTCATTCAACA+AGG | + | Chr1:27159913-27159932 | MsG0180001798.01.T01:CDS | 35.0% | |
| GTGGATGAACTTAAAAAAGC+TGG | + | Chr1:27159165-27159184 | MsG0180001798.01.T01:CDS | 35.0% | |
| TACCATTCATATGGCTTAAC+AGG | - | Chr1:27159958-27159977 | None:intergenic | 35.0% | |
| TATCTCAAACTTCCTCATTC+TGG | + | Chr1:27158791-27158810 | MsG0180001798.01.T01:CDS | 35.0% | |
| TCCATCGTTCAATTCCAAAA+AGG | - | Chr1:27158678-27158697 | None:intergenic | 35.0% | |
| TGTCATTCAACAAGGACTAA+AGG | + | Chr1:27159921-27159940 | MsG0180001798.01.T01:CDS | 35.0% | |
| TTAGGCAAAGGATATTTAGC+AGG | - | Chr1:27158881-27158900 | None:intergenic | 35.0% | |
| ! | AGGATGATTCTTTTTGCTAC+CGG | + | Chr1:27160036-27160055 | MsG0180001798.01.T01:CDS | 35.0% |
| ! | ATCTCGAATATTTTCCAGTC+CGG | - | Chr1:27160058-27160077 | None:intergenic | 35.0% |
| ! | CTTAGACAACTTGTTCTTAC+TGG | + | Chr1:27158746-27158765 | MsG0180001798.01.T01:CDS | 35.0% |
| !! | ATGGCTGATAAGGTTGATAA+AGG | + | Chr1:27159568-27159587 | MsG0180001798.01.T01:CDS | 35.0% |
| !! | CAAGCATTTTTGACTGTTTC+TGG | + | Chr1:27159319-27159338 | MsG0180001798.01.T01:CDS | 35.0% |
| AAGCTGTTGTTAAGGAGAAG+GGG | + | Chr1:27159119-27159138 | MsG0180001798.01.T01:CDS | 40.0% | |
| AAGGTTGGAGAGTTAATTGG+TGG | + | Chr1:27159874-27159893 | MsG0180001798.01.T01:CDS | 40.0% | |
| AATGGTACATTGACCTAAGG+CGG | + | Chr1:27159971-27159990 | MsG0180001798.01.T01:CDS | 40.0% | |
| AATTCTCTGCTCGAAATGTC+GGG | - | Chr1:27159399-27159418 | None:intergenic | 40.0% | |
| ACAGTGAAACATGCTGGATT+CGG | + | Chr1:27160000-27160019 | MsG0180001798.01.T01:CDS | 40.0% | |
| ACTTACATATACAGAAGCCG+TGG | + | Chr1:27159636-27159655 | MsG0180001798.01.T01:CDS | 40.0% | |
| AGTTAATTGGTGGAAGCCAA+AGG | + | Chr1:27159884-27159903 | MsG0180001798.01.T01:CDS | 40.0% | |
| CCAAAGGTTGGAGAGTTAAT+TGG | + | Chr1:27159871-27159890 | MsG0180001798.01.T01:CDS | 40.0% | |
| CCAATTAACTCTCCAACCTT+TGG | - | Chr1:27159874-27159893 | None:intergenic | 40.0% | |
| CGATGTTGAAGCTGTTGTTA+AGG | + | Chr1:27159111-27159130 | MsG0180001798.01.T01:CDS | 40.0% | |
| GAAGCTGTTGTTAAGGAGAA+GGG | + | Chr1:27159118-27159137 | MsG0180001798.01.T01:CDS | 40.0% | |
| GAATTCTCTGCTCGAAATGT+CGG | - | Chr1:27159400-27159419 | None:intergenic | 40.0% | |
| GCATGAAAGATACCTAACAG+AGG | + | Chr1:27159735-27159754 | MsG0180001798.01.T01:CDS | 40.0% | |
| GGAACTTGTGTAGTTGTTGA+TGG | + | Chr1:27158767-27158786 | MsG0180001798.01.T01:CDS | 40.0% | |
| GGATATTTAGCAGGATCAAC+AGG | - | Chr1:27158872-27158891 | None:intergenic | 40.0% | |
| GTTAATTGGTGGAAGCCAAA+GGG | + | Chr1:27159885-27159904 | MsG0180001798.01.T01:CDS | 40.0% | |
| GTTACTTGACAACTGTCTTG+AGG | + | Chr1:27159534-27159553 | MsG0180001798.01.T01:CDS | 40.0% | |
| TATGGAACAGTGAAACATGC+TGG | + | Chr1:27159994-27160013 | MsG0180001798.01.T01:CDS | 40.0% | |
| TATGGATGTTCTTGTGCCAA+AGG | + | Chr1:27159855-27159874 | MsG0180001798.01.T01:CDS | 40.0% | |
| TATTCCTCGAAAGGATGGAA+AGG | + | Chr1:27159267-27159286 | MsG0180001798.01.T01:CDS | 40.0% | |
| TCCATCCTTTCGAGGAATAT+CGG | - | Chr1:27159266-27159285 | None:intergenic | 40.0% | |
| TGAAGCTGTTGTTAAGGAGA+AGG | + | Chr1:27159117-27159136 | MsG0180001798.01.T01:CDS | 40.0% | |
| TGCCTGTTAAGCCATATGAA+TGG | + | Chr1:27159953-27159972 | MsG0180001798.01.T01:CDS | 40.0% | |
| TTAAGGAGAAGGGGATAAGA+AGG | + | Chr1:27159128-27159147 | MsG0180001798.01.T01:CDS | 40.0% | |
| ! | CGGCAGATTATGGATTGAAT+CGG | - | Chr1:27158566-27158585 | None:intergenic | 40.0% |
| ! | GCATTTGGCTGAATTTTGGA+TGG | + | Chr1:27159432-27159451 | MsG0180001798.01.T01:CDS | 40.0% |
| ! | GGCAGATTATGGATTGAATC+GGG | - | Chr1:27158565-27158584 | None:intergenic | 40.0% |
| !!! | GCCTTTTTGGAATTGAACGA+TGG | + | Chr1:27158674-27158693 | MsG0180001798.01.T01:CDS | 40.0% |
| AAGTCTGCAAACGCGATTTC+AGG | - | Chr1:27159463-27159482 | None:intergenic | 45.0% | |
| ACACGATATCTGCTGTTGCT+CGG | + | Chr1:27158957-27158976 | MsG0180001798.01.T01:CDS | 45.0% | |
| AGAAAGCTAGAATCGGAGGA+TGG | + | Chr1:27158615-27158634 | MsG0180001798.01.T01:CDS | 45.0% | |
| AGATGGTTACCGTGGATAAC+TGG | - | Chr1:27158502-27158521 | None:intergenic | 45.0% | |
| AGCAACAGCAGATATCGTGT+TGG | - | Chr1:27158957-27158976 | None:intergenic | 45.0% | |
| CAGAGAATTCTCACACTTCC+AGG | + | Chr1:27159410-27159429 | MsG0180001798.01.T01:CDS | 45.0% | |
| CCAAAATTCAGCCAAATGCC+TGG | - | Chr1:27159431-27159450 | None:intergenic | 45.0% | |
| CCATCCTTTCGAGGAATATC+GGG | - | Chr1:27159265-27159284 | None:intergenic | 45.0% | |
| CTGGAAGAATCTGCGAAGAA+TGG | + | Chr1:27159664-27159683 | MsG0180001798.01.T01:CDS | 45.0% | |
| GAAAGCTAGAATCGGAGGAT+GGG | + | Chr1:27158616-27158635 | MsG0180001798.01.T01:CDS | 45.0% | |
| GATGTTCTTGTGCCAAAGGT+TGG | + | Chr1:27159859-27159878 | MsG0180001798.01.T01:CDS | 45.0% | |
| GCAGGCAAGAAAGCTAGAAT+CGG | + | Chr1:27158608-27158627 | MsG0180001798.01.T01:CDS | 45.0% | |
| GCTGAAGAGGTTCTTCATGT+TGG | + | Chr1:27158845-27158864 | MsG0180001798.01.T01:CDS | 45.0% | |
| TACAGAAGCCGTGGAAATAC+TGG | + | Chr1:27159645-27159664 | MsG0180001798.01.T01:CDS | 45.0% | |
| TACATTGACCTAAGGCGGTA+TGG | + | Chr1:27159976-27159995 | MsG0180001798.01.T01:CDS | 45.0% | |
| TCATTGAGGCGCATGTAGAA+TGG | - | Chr1:27159814-27159833 | None:intergenic | 45.0% | |
| TCCATAATCTGCCGTGAAGA+CGG | + | Chr1:27158572-27158591 | MsG0180001798.01.T01:CDS | 45.0% | |
| TGAAATCGCGTTTGCAGACT+TGG | + | Chr1:27159462-27159481 | MsG0180001798.01.T01:CDS | 45.0% | |
| TTCTCACACTTCCAGGCATT+TGG | + | Chr1:27159417-27159436 | MsG0180001798.01.T01:CDS | 45.0% | |
| TTCTGTTTCGCTCCAGAATG+AGG | - | Chr1:27158806-27158825 | None:intergenic | 45.0% | |
| ! | AAACATGCTGGATTCGGTCT+TGG | + | Chr1:27160006-27160025 | MsG0180001798.01.T01:CDS | 45.0% |
| ! | CCAGGCATTTGGCTGAATTT+TGG | + | Chr1:27159428-27159447 | MsG0180001798.01.T01:CDS | 45.0% |
| ! | GATTCTTTTTGCTACCGGAC+TGG | + | Chr1:27160041-27160060 | MsG0180001798.01.T01:CDS | 45.0% |
| ! | GTCACGACTATTGATTGCGA+GGG | + | Chr1:27159055-27159074 | MsG0180001798.01.T01:CDS | 45.0% |
| ! | TCAAGAGGGAGTCTCCTTTT+AGG | - | Chr1:27158899-27158918 | None:intergenic | 45.0% |
| ! | TGTCACGACTATTGATTGCG+AGG | + | Chr1:27159054-27159073 | MsG0180001798.01.T01:CDS | 45.0% |
| ! | TTATGGATTGAATCGGGACG+CGG | - | Chr1:27158559-27158578 | None:intergenic | 45.0% |
| !! | AGCAGATATCGTGTTGGTTC+TGG | - | Chr1:27158951-27158970 | None:intergenic | 45.0% |
| !! | GATTCGGTCTTGGCTTTGAA+AGG | + | Chr1:27160016-27160035 | MsG0180001798.01.T01:CDS | 45.0% |
| !!! | TAAGGGTGCTTTCGCCTTTT+TGG | + | Chr1:27158661-27158680 | MsG0180001798.01.T01:CDS | 45.0% |
| AACTTGAAGGTTACCGGCAC+AGG | - | Chr1:27158702-27158721 | None:intergenic | 50.0% | |
| AATCGCGTTTGCAGACTTGG+AGG | + | Chr1:27159465-27159484 | MsG0180001798.01.T01:CDS | 50.0% | |
| AATTGGTGGAAGCCAAAGGG+AGG | + | Chr1:27159888-27159907 | MsG0180001798.01.T01:CDS | 50.0% | |
| ATAATCTGCCGTGAAGACGG+CGG | + | Chr1:27158575-27158594 | MsG0180001798.01.T01:CDS | 50.0% | |
| ATCGGAGGATGGGTGAAAAC+AGG | + | Chr1:27158626-27158645 | MsG0180001798.01.T01:CDS | 50.0% | |
| ATTCCCTTCCCACGATATCC+TGG | + | Chr1:27160081-27160100 | MsG0180001798.01.T01:CDS | 50.0% | |
| CAATGACGACCTAGAGACAG+TGG | + | Chr1:27159828-27159847 | MsG0180001798.01.T01:CDS | 50.0% | |
| CATCATAACGCTCCTCCCTT+TGG | - | Chr1:27159903-27159922 | None:intergenic | 50.0% | |
| CCCGATATTCCTCGAAAGGA+TGG | + | Chr1:27159262-27159281 | MsG0180001798.01.T01:CDS | 50.0% | |
| CGGTCGGAGAATTCAGCTTT+GGG | - | Chr1:27158539-27158558 | None:intergenic | 50.0% | |
| CTGTCTCTAGGTCGTCATTG+AGG | - | Chr1:27159828-27159847 | None:intergenic | 50.0% | |
| GGATGATATGAAGTGCGCTG+AGG | + | Chr1:27159486-27159505 | MsG0180001798.01.T01:CDS | 50.0% | |
| GGCAAGAAAGCTAGAATCGG+AGG | + | Chr1:27158611-27158630 | MsG0180001798.01.T01:CDS | 50.0% | |
| GGTTACCGTGGATAACTGGT+CGG | - | Chr1:27158498-27158517 | None:intergenic | 50.0% | |
| TCACTGTTCCATACCGCCTT+AGG | - | Chr1:27159987-27160006 | None:intergenic | 50.0% | |
| TCAGCCCGATATTCCTCGAA+AGG | + | Chr1:27159258-27159277 | MsG0180001798.01.T01:CDS | 50.0% | |
| TCCACCTTTCCATCCTTTCG+AGG | - | Chr1:27159274-27159293 | None:intergenic | 50.0% | |
| TCCTCGAAAGGATGGAAAGG+TGG | + | Chr1:27159270-27159289 | MsG0180001798.01.T01:CDS | 50.0% | |
| TGTAAGTCGAATGAAGGGGG+TGG | - | Chr1:27159623-27159642 | None:intergenic | 50.0% | |
| TTGAACGATGGAACCTGTGC+CGG | + | Chr1:27158686-27158705 | MsG0180001798.01.T01:CDS | 50.0% | |
| ! | ACTATTGATTGCGAGGGTGC+TGG | + | Chr1:27159061-27159080 | MsG0180001798.01.T01:CDS | 50.0% |
| ! | GAAGGAGATTAGTGCTGCTG+AGG | + | Chr1:27159146-27159165 | MsG0180001798.01.T01:CDS | 50.0% |
| ! | GAAGGAGATTAGTGCTGCTG+TGG | + | Chr1:27159146-27159165 | MsG0180001798.01.T01:CDS | 50.0% |
| ! | GGGAGTCTCCTTTTAGGCAA+AGG | - | Chr1:27158893-27158912 | None:intergenic | 50.0% |
| !! | TTCAGCTTTGGGAACCTCGT+CGG | - | Chr1:27158528-27158547 | None:intergenic | 50.0% |
| AACCTGATCCGCCGTCTTCA+CGG | - | Chr1:27158586-27158605 | None:intergenic | 55.0% | |
| AAGTCGAATGAAGGGGGTGG+AGG | - | Chr1:27159620-27159639 | None:intergenic | 55.0% | |
| ACCGTCCGACCAGTTATCCA+CGG | + | Chr1:27158490-27158509 | MsG0180001798.01.T01:CDS | 55.0% | |
| ACCGTGGATAACTGGTCGGA+CGG | - | Chr1:27158494-27158513 | None:intergenic | 55.0% | |
| CCATAGCAGCCACTGTCTCT+AGG | - | Chr1:27159840-27159859 | None:intergenic | 55.0% | |
| CCTAGAGACAGTGGCTGCTA+TGG | + | Chr1:27159837-27159856 | MsG0180001798.01.T01:CDS | 55.0% | |
| CTGCCAGGATATCGTGGGAA+GGG | - | Chr1:27160087-27160106 | None:intergenic | 55.0% | |
| CTGCTCTGCCAGGATATCGT+GGG | - | Chr1:27160092-27160111 | None:intergenic | 55.0% | |
| GCCGTCTTCACGGCAGATTA+TGG | - | Chr1:27158576-27158595 | None:intergenic | 55.0% | |
| GCGGTCGGAGAATTCAGCTT+TGG | - | Chr1:27158540-27158559 | None:intergenic | 55.0% | |
| TCTGCCAGGATATCGTGGGA+AGG | - | Chr1:27160088-27160107 | None:intergenic | 55.0% | |
| TCTGCTCTGCCAGGATATCG+TGG | - | Chr1:27160093-27160112 | None:intergenic | 55.0% | |
| !! | ATTGCGAGGGTGCTGGTGAA+AGG | + | Chr1:27159068-27159087 | MsG0180001798.01.T01:CDS | 55.0% |
| GACGGCGGATCAGGTTTAGC+AGG | + | Chr1:27158590-27158609 | MsG0180001798.01.T01:CDS | 60.0% | |
| GATCGAGCTTCGCGCTGAAG+AGG | + | Chr1:27158832-27158851 | MsG0180001798.01.T01:CDS | 60.0% | |
| GGATTGAATCGGGACGCGGT+CGG | - | Chr1:27158555-27158574 | None:intergenic | 60.0% | |
| GGTAACCATCTCCTCCGACG+AGG | + | Chr1:27158511-27158530 | MsG0180001798.01.T01:CDS | 60.0% | |
| GTCGGAGGAGATGGTTACCG+TGG | - | Chr1:27158510-27158529 | None:intergenic | 60.0% | |
| GTGGATAACTGGTCGGACGG+TGG | - | Chr1:27158491-27158510 | None:intergenic | 60.0% | |
| !! | AGCTTTGGGAACCTCGTCGG+AGG | - | Chr1:27158525-27158544 | None:intergenic | 60.0% |
| GGGAACCTCGTCGGAGGAGA+TGG | - | Chr1:27158519-27158538 | None:intergenic | 65.0% | |
| TGCCGTGAAGACGGCGGATC+AGG | + | Chr1:27158581-27158600 | MsG0180001798.01.T01:CDS | 65.0% | |
| ! | GGTCGGACGGTGGTGATGAG+AGG | - | Chr1:27158481-27158500 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 27158470 | 27160119 | 27158470 | ID=MsG0180001798.01;Name=MsG0180001798.01 |
| Chr1 | mRNA | 27158470 | 27160119 | 27158470 | ID=MsG0180001798.01.T01;Parent=MsG0180001798.01;Name=MsG0180001798.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|549 |
| Chr1 | exon | 27158470 | 27160119 | 27158470 | ID=MsG0180001798.01.T01:exon:34932;Parent=MsG0180001798.01.T01 |
| Chr1 | CDS | 27158470 | 27160119 | 27158470 | ID=MsG0180001798.01.T01:cds;Parent=MsG0180001798.01.T01 |
| Gene Sequence |
| Protein sequence |
