Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029403.01.T01 | XP_024640315.2 | 68.089 | 492 | 108 | 7 | 1 | 490 | 257 | 701 | 0 | 602 |
| MsG0580029403.01.T01 | XP_024640315.2 | 55.532 | 470 | 109 | 7 | 24 | 486 | 950 | 1326 | 2.47E-140 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029403.01.T01 | Q54HW1 | 29.518 | 166 | 106 | 4 | 5 | 170 | 31 | 185 | 6.99E-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029403.01.T01 | G7KHB3 | 68.089 | 492 | 108 | 7 | 1 | 490 | 257 | 701 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029403.01.T01 | MTR_5g085480 | 68.089 | 492 | 108 | 7 | 1 | 490 | 257 | 701 | 0.0 | 600 |
| MsG0580029403.01.T01 | MTR_5g085480 | 68.089 | 492 | 108 | 7 | 1 | 490 | 97 | 541 | 0.0 | 598 |
| MsG0580029403.01.T01 | MTR_5g085500 | 57.115 | 520 | 117 | 7 | 17 | 486 | 2 | 465 | 0.0 | 524 |
| MsG0580029403.01.T01 | MTR_5g085830 | 54.639 | 485 | 144 | 8 | 1 | 478 | 290 | 705 | 2.46e-159 | 469 |
| MsG0580029403.01.T01 | MTR_5g085810 | 56.965 | 481 | 141 | 9 | 1 | 478 | 316 | 733 | 7.03e-158 | 466 |
| MsG0580029403.01.T01 | MTR_2g033050 | 72.222 | 198 | 55 | 0 | 1 | 198 | 213 | 410 | 4.33e-98 | 302 |
| MsG0580029403.01.T01 | MTR_2g033045 | 55.682 | 264 | 54 | 5 | 222 | 485 | 24 | 224 | 2.12e-77 | 244 |
| MsG0580029403.01.T01 | MTR_5g085440 | 59.917 | 242 | 65 | 6 | 250 | 490 | 155 | 365 | 9.12e-77 | 245 |
| MsG0580029403.01.T01 | MTR_5g085560 | 57.343 | 143 | 34 | 3 | 204 | 346 | 1 | 116 | 1.20e-39 | 140 |
| MsG0580029403.01.T01 | MTR_5g085530 | 85.075 | 67 | 9 | 1 | 1 | 66 | 7 | 73 | 4.39e-32 | 118 |
| MsG0580029403.01.T01 | MTR_2g101310 | 23.555 | 467 | 277 | 13 | 1 | 432 | 153 | 574 | 1.77e-19 | 92.0 |
| MsG0580029403.01.T01 | MTR_1g069110 | 22.799 | 443 | 243 | 11 | 2 | 421 | 30 | 396 | 1.09e-16 | 82.8 |
| MsG0580029403.01.T01 | MTR_4g062100 | 23.023 | 430 | 268 | 11 | 15 | 430 | 100 | 480 | 1.26e-13 | 73.6 |
| MsG0580029403.01.T01 | MTR_2g101320 | 21.739 | 437 | 302 | 9 | 1 | 423 | 153 | 563 | 1.28e-13 | 73.6 |
| MsG0580029403.01.T01 | MTR_2g101310 | 29.255 | 188 | 120 | 4 | 1 | 184 | 153 | 331 | 6.29e-13 | 71.2 |
| MsG0580029403.01.T01 | MTR_7g451420 | 28.866 | 194 | 123 | 5 | 5 | 190 | 60 | 246 | 2.48e-12 | 68.2 |
| MsG0580029403.01.T01 | MTR_2g096190 | 22.936 | 436 | 255 | 9 | 1 | 430 | 116 | 476 | 3.69e-12 | 68.9 |
| MsG0580029403.01.T01 | MTR_8g072510 | 27.746 | 173 | 113 | 4 | 5 | 169 | 61 | 229 | 3.54e-11 | 65.5 |
| MsG0580029403.01.T01 | MTR_8g040930 | 28.351 | 194 | 127 | 5 | 5 | 190 | 10 | 199 | 4.68e-11 | 64.7 |
| MsG0580029403.01.T01 | MTR_8g041240 | 28.351 | 194 | 127 | 5 | 5 | 190 | 10 | 199 | 4.68e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029403.01.T01 | AT4G03460 | 37.860 | 243 | 124 | 7 | 1 | 242 | 215 | 431 | 6.92e-35 | 138 |
| MsG0580029403.01.T01 | AT4G03460 | 34.463 | 177 | 110 | 1 | 311 | 481 | 417 | 593 | 3.56e-15 | 78.6 |
| MsG0580029403.01.T01 | AT4G03460 | 37.860 | 243 | 124 | 7 | 1 | 242 | 247 | 463 | 8.36e-35 | 138 |
| MsG0580029403.01.T01 | AT4G03460 | 34.463 | 177 | 110 | 1 | 311 | 481 | 449 | 625 | 3.19e-15 | 79.0 |
| MsG0580029403.01.T01 | AT1G03670 | 33.636 | 220 | 119 | 6 | 1 | 215 | 230 | 427 | 5.05e-28 | 118 |
| MsG0580029403.01.T01 | AT1G03670 | 31.818 | 176 | 106 | 5 | 320 | 485 | 445 | 616 | 8.95e-17 | 83.6 |
| MsG0580029403.01.T01 | AT4G03490 | 32.927 | 246 | 138 | 7 | 1 | 242 | 212 | 434 | 1.06e-27 | 117 |
| MsG0580029403.01.T01 | AT4G03490 | 30.233 | 172 | 111 | 5 | 320 | 483 | 429 | 599 | 3.06e-14 | 75.9 |
| MsG0580029403.01.T01 | AT4G03490 | 32.927 | 246 | 138 | 7 | 1 | 242 | 222 | 444 | 1.33e-27 | 117 |
| MsG0580029403.01.T01 | AT4G03490 | 30.233 | 172 | 111 | 5 | 320 | 483 | 439 | 609 | 2.89e-14 | 75.9 |
| MsG0580029403.01.T01 | AT4G03500 | 36.744 | 215 | 114 | 6 | 1 | 214 | 262 | 455 | 2.30e-27 | 116 |
| MsG0580029403.01.T01 | AT4G03500 | 35.714 | 168 | 101 | 2 | 313 | 473 | 467 | 634 | 1.52e-18 | 89.4 |
| MsG0580029403.01.T01 | AT4G03500 | 36.744 | 215 | 114 | 6 | 1 | 214 | 239 | 432 | 2.49e-27 | 116 |
| MsG0580029403.01.T01 | AT4G03500 | 35.714 | 168 | 101 | 2 | 313 | 473 | 444 | 611 | 1.44e-18 | 89.4 |
| MsG0580029403.01.T01 | AT4G03500 | 36.744 | 215 | 114 | 6 | 1 | 214 | 239 | 432 | 2.49e-27 | 116 |
| MsG0580029403.01.T01 | AT4G03500 | 35.714 | 168 | 101 | 2 | 313 | 473 | 444 | 611 | 1.44e-18 | 89.4 |
| MsG0580029403.01.T01 | AT4G03490 | 32.927 | 246 | 138 | 7 | 1 | 242 | 222 | 444 | 2.60e-27 | 116 |
| MsG0580029403.01.T01 | AT4G03490 | 32.353 | 136 | 80 | 3 | 320 | 443 | 439 | 574 | 2.78e-13 | 72.8 |
| MsG0580029403.01.T01 | AT4G03450 | 32.203 | 236 | 136 | 6 | 1 | 231 | 238 | 454 | 1.78e-23 | 104 |
| MsG0580029403.01.T01 | AT4G03450 | 23.173 | 479 | 284 | 18 | 15 | 466 | 182 | 603 | 4.99e-12 | 68.6 |
| MsG0580029403.01.T01 | AT4G03450 | 32.203 | 236 | 136 | 6 | 1 | 231 | 238 | 454 | 2.66e-23 | 103 |
| MsG0580029403.01.T01 | AT4G03450 | 23.756 | 442 | 258 | 17 | 15 | 429 | 182 | 571 | 7.44e-12 | 68.2 |
| MsG0580029403.01.T01 | AT4G03480 | 31.646 | 237 | 135 | 7 | 1 | 230 | 368 | 584 | 9.88e-22 | 99.0 |
| MsG0580029403.01.T01 | AT4G03480 | 31.646 | 237 | 135 | 7 | 1 | 230 | 371 | 587 | 1.11e-21 | 99.0 |
| MsG0580029403.01.T01 | AT4G03470 | 31.718 | 227 | 130 | 5 | 1 | 227 | 285 | 486 | 5.23e-21 | 97.1 |
| MsG0580029403.01.T01 | AT4G03490 | 38.889 | 144 | 80 | 4 | 1 | 140 | 212 | 351 | 1.64e-19 | 92.4 |
| MsG0580029403.01.T01 | AT4G03490 | 32.353 | 136 | 80 | 3 | 320 | 443 | 391 | 526 | 3.55e-13 | 72.4 |
| MsG0580029403.01.T01 | AT4G03440 | 36.986 | 146 | 91 | 1 | 1 | 146 | 328 | 472 | 1.91e-19 | 92.0 |
| MsG0580029403.01.T01 | AT4G03440 | 36.986 | 146 | 91 | 1 | 1 | 146 | 321 | 465 | 1.95e-19 | 92.0 |
| MsG0580029403.01.T01 | AT4G03440 | 36.986 | 146 | 91 | 1 | 1 | 146 | 321 | 465 | 1.95e-19 | 92.0 |
| MsG0580029403.01.T01 | AT4G03490 | 38.889 | 144 | 80 | 4 | 1 | 140 | 202 | 341 | 2.13e-19 | 92.0 |
| MsG0580029403.01.T01 | AT4G03490 | 32.639 | 144 | 87 | 4 | 320 | 457 | 381 | 520 | 2.03e-13 | 73.2 |
| MsG0580029403.01.T01 | AT4G05040 | 39.552 | 134 | 78 | 2 | 1 | 134 | 288 | 418 | 7.48e-18 | 87.0 |
| MsG0580029403.01.T01 | AT4G05040 | 39.552 | 134 | 78 | 2 | 1 | 134 | 288 | 418 | 7.48e-18 | 87.0 |
| MsG0580029403.01.T01 | AT4G05040 | 39.552 | 134 | 78 | 2 | 1 | 134 | 288 | 418 | 7.48e-18 | 87.0 |
| MsG0580029403.01.T01 | AT4G05040 | 39.552 | 134 | 78 | 2 | 1 | 134 | 288 | 418 | 7.48e-18 | 87.0 |
| MsG0580029403.01.T01 | AT4G05040 | 39.552 | 134 | 78 | 2 | 1 | 134 | 288 | 418 | 7.48e-18 | 87.0 |
| MsG0580029403.01.T01 | AT4G05040 | 39.552 | 134 | 78 | 2 | 1 | 134 | 288 | 418 | 7.48e-18 | 87.0 |
| MsG0580029403.01.T01 | AT4G05040 | 39.552 | 134 | 78 | 2 | 1 | 134 | 288 | 418 | 7.48e-18 | 87.0 |
| MsG0580029403.01.T01 | AT5G60070 | 23.077 | 429 | 270 | 8 | 16 | 430 | 104 | 486 | 1.78e-16 | 82.4 |
| MsG0580029403.01.T01 | AT4G14390 | 34.320 | 169 | 105 | 4 | 1 | 169 | 286 | 448 | 7.48e-16 | 80.9 |
| MsG0580029403.01.T01 | AT4G14390 | 34.320 | 169 | 105 | 4 | 1 | 169 | 306 | 468 | 7.93e-16 | 80.9 |
| MsG0580029403.01.T01 | AT4G14390 | 34.320 | 169 | 105 | 4 | 1 | 169 | 305 | 467 | 7.99e-16 | 80.9 |
| MsG0580029403.01.T01 | AT4G14390 | 35.616 | 146 | 91 | 2 | 1 | 146 | 286 | 428 | 9.62e-16 | 80.1 |
| MsG0580029403.01.T01 | AT4G14400 | 32.558 | 172 | 111 | 4 | 1 | 172 | 211 | 377 | 1.65e-13 | 73.6 |
| MsG0580029403.01.T01 | AT4G14400 | 32.558 | 172 | 111 | 4 | 1 | 172 | 211 | 377 | 1.65e-13 | 73.6 |
| MsG0580029403.01.T01 | AT4G14400 | 32.558 | 172 | 111 | 4 | 1 | 172 | 277 | 443 | 1.85e-13 | 73.2 |
| MsG0580029403.01.T01 | AT5G51160 | 28.302 | 159 | 109 | 3 | 17 | 171 | 44 | 201 | 2.40e-12 | 69.3 |
Find 70 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAGCGGCTTACATTTA+TGG | 0.138680 | 5:+96564894 | MsG0580029403.01.T01:intron |
| CTGTCTTTGGCTTTCATTGC+TGG | 0.172672 | 5:+96565534 | MsG0580029403.01.T01:CDS |
| AACCAACTTGGATCCATTTA+AGG | 0.181732 | 5:+96562778 | MsG0580029403.01.T01:CDS |
| TTCCATGTTTGTCCCTTAAA+TGG | 0.189087 | 5:-96562791 | None:intergenic |
| TTGGTTGGCAAATGTGTTTC+TGG | 0.194285 | 5:+96565584 | MsG0580029403.01.T01:CDS |
| CTTCATTGCGCAGCATTTAT+AGG | 0.202144 | 5:+96562822 | MsG0580029403.01.T01:CDS |
| AACACTTGGATTAACTAAAT+TGG | 0.205790 | 5:+96565458 | MsG0580029403.01.T01:CDS |
| TTAATACTAATTGCATTTCT+TGG | 0.219575 | 5:-96564946 | None:intergenic |
| CGCTCTCATCTCACTGTCTT+TGG | 0.227077 | 5:+96565521 | MsG0580029403.01.T01:CDS |
| CCAATTCATCTAGCATCTTA+TGG | 0.233508 | 5:+96562921 | MsG0580029403.01.T01:CDS |
| GTTCTATTATCATACTCTTT+TGG | 0.258337 | 5:+96565433 | MsG0580029403.01.T01:CDS |
| CTACTGAAGCAGTGATTATA+AGG | 0.264237 | 5:-96565299 | None:intergenic |
| GGCAAATGTGTTTCTGGTTA+TGG | 0.282279 | 5:+96565590 | MsG0580029403.01.T01:CDS |
| GATATTGTAATGCCAATTCT+TGG | 0.288457 | 5:+96565495 | MsG0580029403.01.T01:CDS |
| CCATAAGATGCTAGATGAAT+TGG | 0.308779 | 5:-96562921 | None:intergenic |
| CATTGCAGAGACACTGATAT+TGG | 0.332611 | 5:+96565269 | MsG0580029403.01.T01:CDS |
| TGCTTCAGTAGCAGCATGTT+TGG | 0.339931 | 5:+96565311 | MsG0580029403.01.T01:CDS |
| GCAGCATGTTTGGCTGTTCC+AGG | 0.367957 | 5:+96565321 | MsG0580029403.01.T01:CDS |
| TGGAGACACCCCTTTGCATT+TGG | 0.370450 | 5:+96563130 | MsG0580029403.01.T01:CDS |
| CCTGTTGAATTTGAATCACT+TGG | 0.381159 | 5:-96564982 | None:intergenic |
| ATAAATCAGAAAGATAAGTA+TGG | 0.387644 | 5:+96563110 | MsG0580029403.01.T01:CDS |
| TATCTTGGAAAATTGTTGTC+GGG | 0.389960 | 5:-96565207 | None:intergenic |
| AAAAGGCTTGAATAGATATA+GGG | 0.402052 | 5:+96565167 | MsG0580029403.01.T01:CDS |
| ATGAGAGCGATTCCAAGAAT+TGG | 0.411932 | 5:-96565507 | None:intergenic |
| CAAGAGCCGTTTCGTTATCC+TGG | 0.426549 | 5:-96563232 | None:intergenic |
| ATACTAGAAAGTCAAGTTCA+TGG | 0.435339 | 5:+96563074 | MsG0580029403.01.T01:CDS |
| ACAATTCAAAGTGACGTTGA+TGG | 0.441855 | 5:+96562891 | MsG0580029403.01.T01:CDS |
| ACCAACTTGGATCCATTTAA+GGG | 0.442189 | 5:+96562779 | MsG0580029403.01.T01:CDS |
| TCAAGCATCTCTGTGGGATC+AGG | 0.447170 | 5:-96562984 | None:intergenic |
| CCAAGTGATTCAAATTCAAC+AGG | 0.448026 | 5:+96564982 | MsG0580029403.01.T01:CDS |
| GACGGTGTTGAATTATTACT+TGG | 0.450335 | 5:+96562852 | MsG0580029403.01.T01:CDS |
| ACAAGATAAAGACAATAAAC+AGG | 0.462329 | 5:+96565014 | MsG0580029403.01.T01:CDS |
| CTGATCAAGGTGTTAATCCT+TGG | 0.462997 | 5:+96565748 | MsG0580029403.01.T01:CDS |
| ATCTTGCAGCCAAATGCAAA+GGG | 0.474929 | 5:-96563139 | None:intergenic |
| CTTTCTGATTTATCATCTGA+CGG | 0.487010 | 5:-96563100 | None:intergenic |
| AACTAAGTAGCACGCAGTTG+TGG | 0.488682 | 5:-96563171 | None:intergenic |
| TCATAAATCATCTTTGAGAC+AGG | 0.489863 | 5:+96563280 | MsG0580029403.01.T01:CDS |
| GAGAGAAGTAAAACTGATCA+AGG | 0.499641 | 5:+96565735 | MsG0580029403.01.T01:CDS |
| TTTATGGCACTTAAATCTGC+TGG | 0.506611 | 5:+96564910 | MsG0580029403.01.T01:CDS |
| ACTAAGTAGCACGCAGTTGT+GGG | 0.511031 | 5:-96563170 | None:intergenic |
| GCATTTATAGGTTACCTTGA+CGG | 0.511829 | 5:+96562834 | MsG0580029403.01.T01:CDS |
| TCCCTTAAATGGATCCAAGT+TGG | 0.512343 | 5:-96562780 | None:intergenic |
| ATATCTTGGAAAATTGTTGT+CGG | 0.516632 | 5:-96565208 | None:intergenic |
| TGATGAATATAATGAATGCT+TGG | 0.525994 | 5:-96565386 | None:intergenic |
| GAGTATGATAATAGAACTGA+TGG | 0.527293 | 5:-96565427 | None:intergenic |
| TACTGAAGCAGTGATTATAA+GGG | 0.546627 | 5:-96565298 | None:intergenic |
| CTGTTATCAGTGAACTCAGT+TGG | 0.547603 | 5:+96565565 | MsG0580029403.01.T01:CDS |
| ATAAATGCTGCGCAATGAAG+AGG | 0.549255 | 5:-96562819 | None:intergenic |
| TATCAGTGAACTCAGTTGGT+TGG | 0.549615 | 5:+96565569 | MsG0580029403.01.T01:CDS |
| TTCTAGTTGATGTTGATGGA+AGG | 0.552222 | 5:-96565659 | None:intergenic |
| TACTAGAAAAGAAACCAACT+TGG | 0.570724 | 5:+96562766 | MsG0580029403.01.T01:CDS |
| GATCTTGCAGCCAAATGCAA+AGG | 0.573294 | 5:-96563140 | None:intergenic |
| GTCTCAAAGATGATTTATGA+AGG | 0.577218 | 5:-96563277 | None:intergenic |
| ATCTTGGAAAATTGTTGTCG+GGG | 0.577836 | 5:-96565206 | None:intergenic |
| GGATCTTGATATGGTTAACC+AGG | 0.582624 | 5:+96563214 | MsG0580029403.01.T01:CDS |
| CTTCACATTGCAGCAGACAA+TGG | 0.589479 | 5:+96563029 | MsG0580029403.01.T01:CDS |
| GGTTAACCAGGATAACGAAA+CGG | 0.597187 | 5:+96563226 | MsG0580029403.01.T01:CDS |
| GCTGTTCCAGGTGAAGCAGA+AGG | 0.599773 | 5:+96565333 | MsG0580029403.01.T01:CDS |
| ATTCACTCAATCTATGACCA+AGG | 0.601657 | 5:-96565765 | None:intergenic |
| TTGATGTTGATGGAAGGAAA+AGG | 0.605208 | 5:-96565653 | None:intergenic |
| ATCCATTTAAGGGACAAACA+TGG | 0.605452 | 5:+96562789 | MsG0580029403.01.T01:CDS |
| GTAGTAGGAAATGTATCGCA+AGG | 0.612345 | 5:-96565685 | None:intergenic |
| GTAATAATTCAACACCGTCA+AGG | 0.613878 | 5:-96562848 | None:intergenic |
| AGAAGTGTCAAGCATCTCTG+TGG | 0.631679 | 5:-96562991 | None:intergenic |
| GAAGTGTCAAGCATCTCTGT+GGG | 0.645090 | 5:-96562990 | None:intergenic |
| AGCATCTTATGGTGGCCATG+TGG | 0.645724 | 5:+96562932 | MsG0580029403.01.T01:CDS |
| ACTTCTTCACTACTTCCACA+TGG | 0.680029 | 5:-96562947 | None:intergenic |
| TCATCTTTGAGACAGGCAAG+TGG | 0.682967 | 5:+96563287 | MsG0580029403.01.T01:CDS |
| ATTCATCTAGCATCTTATGG+TGG | 0.698790 | 5:+96562924 | MsG0580029403.01.T01:CDS |
| TCTTGCAGCCAAATGCAAAG+GGG | 0.746892 | 5:-96563138 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGATAAATATGTTTA+GGG | - | Chr5:96563403-96563422 | None:intergenic | 10.0% |
| !! | TAAATATGATAAATATGTTT+AGG | - | Chr5:96563404-96563423 | None:intergenic | 10.0% |
| !!! | ATATTTTTTAGTTATATTGT+TGG | - | Chr5:96563950-96563969 | None:intergenic | 10.0% |
| !!! | TCTTTTTTTTTTTTTACAAA+AGG | + | Chr5:96563328-96563347 | MsG0580029403.01.T01:CDS | 10.0% |
| !!! | TTATAGAAAAAGTTTTTTAA+CGG | + | Chr5:96564015-96564034 | MsG0580029403.01.T01:intron | 10.0% |
| !!! | TTATATAAAAATTTGTTTAG+GGG | + | Chr5:96563687-96563706 | MsG0580029403.01.T01:intron | 10.0% |
| !!! | ATGCATAAGATTTTTTATTT+TGG | + | Chr5:96564590-96564609 | MsG0580029403.01.T01:intron | 15.0% |
| !!! | ATTGAAGAAAACATATTTTA+AGG | - | Chr5:96564697-96564716 | None:intergenic | 15.0% |
| !!! | GATTTTTCTCTTTTAAAAAA+TGG | - | Chr5:96564219-96564238 | None:intergenic | 15.0% |
| !!! | TATTATATTTGCTATATTGT+TGG | - | Chr5:96563625-96563644 | None:intergenic | 15.0% |
| !!! | TTACACTTTTTAAATGATAA+TGG | + | Chr5:96564087-96564106 | MsG0580029403.01.T01:intron | 15.0% |
| !!! | TTCTTTTCATATTTTATTGA+TGG | + | Chr5:96564377-96564396 | MsG0580029403.01.T01:intron | 15.0% |
| !!! | TTGATTTTGATTCAAATTAT+AGG | + | Chr5:96563542-96563561 | MsG0580029403.01.T01:intron | 15.0% |
| !! | AAAGAAAAAGAAACAGAAAA+AGG | + | Chr5:96565150-96565169 | MsG0580029403.01.T01:CDS | 20.0% |
| !! | ATAAATCAGAAAGATAAGTA+TGG | + | Chr5:96563110-96563129 | MsG0580029403.01.T01:CDS | 20.0% |
| !! | ATTTAAATTGATGTCAACTA+AGG | + | Chr5:96564346-96564365 | MsG0580029403.01.T01:intron | 20.0% |
| !! | TAACCAAAATAATGAAAAAG+TGG | + | Chr5:96563193-96563212 | MsG0580029403.01.T01:CDS | 20.0% |
| !! | TAACGTTTGAAAATTATGAA+CGG | + | Chr5:96563817-96563836 | MsG0580029403.01.T01:intron | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | - | Chr5:96564002-96564021 | None:intergenic | 20.0% |
| !! | TGATGTTTATAACTCATTTA+TGG | - | Chr5:96564418-96564437 | None:intergenic | 20.0% |
| !! | TTAATACTAATTGCATTTCT+TGG | - | Chr5:96564949-96564968 | None:intergenic | 20.0% |
| !!! | AGTTTTTTAACGGTATAATT+AGG | + | Chr5:96564025-96564044 | MsG0580029403.01.T01:intron | 20.0% |
| !!! | CAATTTTCCAAGATATTTTA+TGG | + | Chr5:96565215-96565234 | MsG0580029403.01.T01:CDS | 20.0% |
| ! | AAAAAAAAAAAGAGTTTGCG+AGG | - | Chr5:96563321-96563340 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAGAGTTTGCGA+GGG | - | Chr5:96563320-96563339 | None:intergenic | 25.0% |
| ! | AAAAAGGCTTGAATAGATAT+AGG | + | Chr5:96565166-96565185 | MsG0580029403.01.T01:CDS | 25.0% |
| ! | AAAAGGCTTGAATAGATATA+GGG | + | Chr5:96565167-96565186 | MsG0580029403.01.T01:CDS | 25.0% |
| ! | AACACTTGGATTAACTAAAT+TGG | + | Chr5:96565458-96565477 | MsG0580029403.01.T01:CDS | 25.0% |
| ! | ACAAGATAAAGACAATAAAC+AGG | + | Chr5:96565014-96565033 | MsG0580029403.01.T01:CDS | 25.0% |
| ! | ATATCTTGGAAAATTGTTGT+CGG | - | Chr5:96565211-96565230 | None:intergenic | 25.0% |
| ! | ATTATATACTAGCGAAAAGA+CGG | + | Chr5:96563756-96563775 | MsG0580029403.01.T01:intron | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | - | Chr5:96563926-96563945 | None:intergenic | 25.0% |
| ! | TAGAAAAAGAAAGAAGTAGT+AGG | - | Chr5:96565703-96565722 | None:intergenic | 25.0% |
| ! | TCAAAATATGTTTGACTACA+TGG | - | Chr5:96564633-96564652 | None:intergenic | 25.0% |
| ! | TGATGAATATAATGAATGCT+TGG | - | Chr5:96565389-96565408 | None:intergenic | 25.0% |
| !! | ATAGATAATCATGGTTAGTT+TGG | - | Chr5:96563917-96563936 | None:intergenic | 25.0% |
| !! | ATTTAGGAACAACAAAGTTT+TGG | - | Chr5:96564518-96564537 | None:intergenic | 25.0% |
| !! | CCAAGATATTTTATGGTAAA+AGG | + | Chr5:96565222-96565241 | MsG0580029403.01.T01:CDS | 25.0% |
| !! | CCTTTTACCATAAAATATCT+TGG | - | Chr5:96565225-96565244 | None:intergenic | 25.0% |
| !! | GTTCTATTATCATACTCTTT+TGG | + | Chr5:96565433-96565452 | MsG0580029403.01.T01:CDS | 25.0% |
| !! | TTTCTTTTTCTTTACTCTGT+TGG | - | Chr5:96565143-96565162 | None:intergenic | 25.0% |
| !!! | ATAAAGAGAGTACATAGTTT+TGG | - | Chr5:96563738-96563757 | None:intergenic | 25.0% |
| !!! | GATCCACTTTTTCATTATTT+TGG | - | Chr5:96563199-96563218 | None:intergenic | 25.0% |
| AAAAAAAAAGAGTTTGCGAG+GGG | - | Chr5:96563319-96563338 | None:intergenic | 30.0% | |
| AAATTGATGTCAACTAAGGA+TGG | + | Chr5:96564350-96564369 | MsG0580029403.01.T01:intron | 30.0% | |
| AATGAGTTATACACTACACA+TGG | - | Chr5:96564835-96564854 | None:intergenic | 30.0% | |
| ATACTAGAAAGTCAAGTTCA+TGG | + | Chr5:96563074-96563093 | MsG0580029403.01.T01:CDS | 30.0% | |
| CTTTCTGATTTATCATCTGA+CGG | - | Chr5:96563103-96563122 | None:intergenic | 30.0% | |
| GAGTATGATAATAGAACTGA+TGG | - | Chr5:96565430-96565449 | None:intergenic | 30.0% | |
| GATATTGTAATGCCAATTCT+TGG | + | Chr5:96565495-96565514 | MsG0580029403.01.T01:CDS | 30.0% | |
| GTCTCAAAGATGATTTATGA+AGG | - | Chr5:96563280-96563299 | None:intergenic | 30.0% | |
| TACTAGAAAAGAAACCAACT+TGG | + | Chr5:96562766-96562785 | MsG0580029403.01.T01:CDS | 30.0% | |
| TACTGAAGCAGTGATTATAA+GGG | - | Chr5:96565301-96565320 | None:intergenic | 30.0% | |
| TATCTTGGAAAATTGTTGTC+GGG | - | Chr5:96565210-96565229 | None:intergenic | 30.0% | |
| TGAAAAAGTGGATCTTGATA+TGG | + | Chr5:96563205-96563224 | MsG0580029403.01.T01:CDS | 30.0% | |
| TTATATACTAGCGAAAAGAC+GGG | + | Chr5:96563757-96563776 | MsG0580029403.01.T01:intron | 30.0% | |
| !! | ACTTCTTTCTTTTTCTAGCA+TGG | + | Chr5:96565706-96565725 | MsG0580029403.01.T01:CDS | 30.0% |
| !! | AGTTGGTTTCTTTTCTAGTA+TGG | - | Chr5:96562766-96562785 | None:intergenic | 30.0% |
| !! | CTGCAATGTTTTTATATGTG+TGG | - | Chr5:96565257-96565276 | None:intergenic | 30.0% |
| !! | CTTTGTTGTTCCTAAATCAA+TGG | + | Chr5:96564521-96564540 | MsG0580029403.01.T01:intron | 30.0% |
| !! | TCATAAATCATCTTTGAGAC+AGG | + | Chr5:96563280-96563299 | MsG0580029403.01.T01:CDS | 30.0% |
| !! | TGTTATCTTGCCATTGATTT+AGG | - | Chr5:96564534-96564553 | None:intergenic | 30.0% |
| !!! | CTGTTTTGTTTCACTTTGTT+GGG | - | Chr5:96565052-96565071 | None:intergenic | 30.0% |
| !!! | GATTTTCTAGTTGATGTTGA+TGG | - | Chr5:96565666-96565685 | None:intergenic | 30.0% |
| !!! | TATGGCATTGATTTTTGTTG+TGG | + | Chr5:96565608-96565627 | MsG0580029403.01.T01:CDS | 30.0% |
| !!! | TCTGTTTTGTTTCACTTTGT+TGG | - | Chr5:96565053-96565072 | None:intergenic | 30.0% |
| AACCAACTTGGATCCATTTA+AGG | + | Chr5:96562778-96562797 | MsG0580029403.01.T01:CDS | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | - | Chr5:96563793-96563812 | None:intergenic | 35.0% | |
| AATCAGCTCAAAAAAGCTGA+AGG | + | Chr5:96564235-96564254 | MsG0580029403.01.T01:intron | 35.0% | |
| ACAATTCAAAGTGACGTTGA+TGG | + | Chr5:96562891-96562910 | MsG0580029403.01.T01:CDS | 35.0% | |
| ACCAACTTGGATCCATTTAA+GGG | + | Chr5:96562779-96562798 | MsG0580029403.01.T01:CDS | 35.0% | |
| ATCAGCTCAAAAAAGCTGAA+GGG | + | Chr5:96564236-96564255 | MsG0580029403.01.T01:intron | 35.0% | |
| ATCCATTTAAGGGACAAACA+TGG | + | Chr5:96562789-96562808 | MsG0580029403.01.T01:CDS | 35.0% | |
| ATCTTGGAAAATTGTTGTCG+GGG | - | Chr5:96565209-96565228 | None:intergenic | 35.0% | |
| ATTCATCTAGCATCTTATGG+TGG | + | Chr5:96562924-96562943 | MsG0580029403.01.T01:CDS | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | - | Chr5:96563794-96563813 | None:intergenic | 35.0% | |
| CCAAGTGATTCAAATTCAAC+AGG | + | Chr5:96564982-96565001 | MsG0580029403.01.T01:CDS | 35.0% | |
| CCAATTCATCTAGCATCTTA+TGG | + | Chr5:96562921-96562940 | MsG0580029403.01.T01:CDS | 35.0% | |
| CCATAAGATGCTAGATGAAT+TGG | - | Chr5:96562924-96562943 | None:intergenic | 35.0% | |
| CCTGTTGAATTTGAATCACT+TGG | - | Chr5:96564985-96565004 | None:intergenic | 35.0% | |
| CTACTGAAGCAGTGATTATA+AGG | - | Chr5:96565302-96565321 | None:intergenic | 35.0% | |
| GAGAGAAGTAAAACTGATCA+AGG | + | Chr5:96565735-96565754 | MsG0580029403.01.T01:CDS | 35.0% | |
| GCATTTATAGGTTACCTTGA+CGG | + | Chr5:96562834-96562853 | MsG0580029403.01.T01:CDS | 35.0% | |
| GTAATAATTCAACACCGTCA+AGG | - | Chr5:96562851-96562870 | None:intergenic | 35.0% | |
| TGTAAGACGATCTTCAATGA+TGG | + | Chr5:96564562-96564581 | MsG0580029403.01.T01:intron | 35.0% | |
| TTCCATGTTTGTCCCTTAAA+TGG | - | Chr5:96562794-96562813 | None:intergenic | 35.0% | |
| TTGTGTAACAATGTTTGCAG+CGG | + | Chr5:96564881-96564900 | MsG0580029403.01.T01:intron | 35.0% | |
| TTTATGGCACTTAAATCTGC+TGG | + | Chr5:96564910-96564929 | MsG0580029403.01.T01:CDS | 35.0% | |
| ! | ATACTCTTTTGGACAACACT+TGG | + | Chr5:96565444-96565463 | MsG0580029403.01.T01:CDS | 35.0% |
| ! | GACGGTGTTGAATTATTACT+TGG | + | Chr5:96562852-96562871 | MsG0580029403.01.T01:CDS | 35.0% |
| ! | GTTTTTATATGTGTGGACGT+CGG | - | Chr5:96565250-96565269 | None:intergenic | 35.0% |
| ! | TTCTAGTTGATGTTGATGGA+AGG | - | Chr5:96565662-96565681 | None:intergenic | 35.0% |
| ! | TTGATGTTGATGGAAGGAAA+AGG | - | Chr5:96565656-96565675 | None:intergenic | 35.0% |
| ACTTCTTCACTACTTCCACA+TGG | - | Chr5:96562950-96562969 | None:intergenic | 40.0% | |
| ATAAATGCTGCGCAATGAAG+AGG | - | Chr5:96562822-96562841 | None:intergenic | 40.0% | |
| ATCTTGCAGCCAAATGCAAA+GGG | - | Chr5:96563142-96563161 | None:intergenic | 40.0% | |
| ATGAGAGCGATTCCAAGAAT+TGG | - | Chr5:96565510-96565529 | None:intergenic | 40.0% | |
| CATTGCAGAGACACTGATAT+TGG | + | Chr5:96565269-96565288 | MsG0580029403.01.T01:CDS | 40.0% | |
| CGTTAGCGCAATAAAAAGAG+CGG | - | Chr5:96563802-96563821 | None:intergenic | 40.0% | |
| CTGTTATCAGTGAACTCAGT+TGG | + | Chr5:96565565-96565584 | MsG0580029403.01.T01:CDS | 40.0% | |
| CTTCATTGCGCAGCATTTAT+AGG | + | Chr5:96562822-96562841 | MsG0580029403.01.T01:CDS | 40.0% | |
| GGATCTTGATATGGTTAACC+AGG | + | Chr5:96563214-96563233 | MsG0580029403.01.T01:CDS | 40.0% | |
| GGTTAACCAGGATAACGAAA+CGG | + | Chr5:96563226-96563245 | MsG0580029403.01.T01:CDS | 40.0% | |
| GTAGTAGGAAATGTATCGCA+AGG | - | Chr5:96565688-96565707 | None:intergenic | 40.0% | |
| TATCAGTGAACTCAGTTGGT+TGG | + | Chr5:96565569-96565588 | MsG0580029403.01.T01:CDS | 40.0% | |
| TCAGCTCAAAAAAGCTGAAG+GGG | + | Chr5:96564237-96564256 | MsG0580029403.01.T01:intron | 40.0% | |
| TCCCTTAAATGGATCCAAGT+TGG | - | Chr5:96562783-96562802 | None:intergenic | 40.0% | |
| TTGGTTGGCAAATGTGTTTC+TGG | + | Chr5:96565584-96565603 | MsG0580029403.01.T01:CDS | 40.0% | |
| TTTGCAGCGGCTTACATTTA+TGG | + | Chr5:96564894-96564913 | MsG0580029403.01.T01:intron | 40.0% | |
| ! | CTGATCAAGGTGTTAATCCT+TGG | + | Chr5:96565748-96565767 | MsG0580029403.01.T01:CDS | 40.0% |
| !! | GGCAAATGTGTTTCTGGTTA+TGG | + | Chr5:96565590-96565609 | MsG0580029403.01.T01:CDS | 40.0% |
| AACTAAGTAGCACGCAGTTG+TGG | - | Chr5:96563174-96563193 | None:intergenic | 45.0% | |
| ACTAAGTAGCACGCAGTTGT+GGG | - | Chr5:96563173-96563192 | None:intergenic | 45.0% | |
| CTTCACATTGCAGCAGACAA+TGG | + | Chr5:96563029-96563048 | MsG0580029403.01.T01:CDS | 45.0% | |
| GATCTTGCAGCCAAATGCAA+AGG | - | Chr5:96563143-96563162 | None:intergenic | 45.0% | |
| TCTTGCAGCCAAATGCAAAG+GGG | - | Chr5:96563141-96563160 | None:intergenic | 45.0% | |
| TGCTTCAGTAGCAGCATGTT+TGG | + | Chr5:96565311-96565330 | MsG0580029403.01.T01:CDS | 45.0% | |
| ! | GAAGTGTCAAGCATCTCTGT+GGG | - | Chr5:96562993-96563012 | None:intergenic | 45.0% |
| !! | AGAAGTGTCAAGCATCTCTG+TGG | - | Chr5:96562994-96563013 | None:intergenic | 45.0% |
| !! | CTGTCTTTGGCTTTCATTGC+TGG | + | Chr5:96565534-96565553 | MsG0580029403.01.T01:CDS | 45.0% |
| !! | TCATCTTTGAGACAGGCAAG+TGG | + | Chr5:96563287-96563306 | MsG0580029403.01.T01:CDS | 45.0% |
| !!! | TTTATATAAAAATTTGTTTA+GGG | + | Chr5:96563686-96563705 | MsG0580029403.01.T01:intron | 5.0% |
| !!! | TTTTATATAAAAATTTGTTT+AGG | + | Chr5:96563685-96563704 | MsG0580029403.01.T01:intron | 5.0% |
| AGCATCTTATGGTGGCCATG+TGG | + | Chr5:96562932-96562951 | MsG0580029403.01.T01:CDS | 50.0% | |
| CAAGAGCCGTTTCGTTATCC+TGG | - | Chr5:96563235-96563254 | None:intergenic | 50.0% | |
| CGCTCTCATCTCACTGTCTT+TGG | + | Chr5:96565521-96565540 | MsG0580029403.01.T01:CDS | 50.0% | |
| TCAAGCATCTCTGTGGGATC+AGG | - | Chr5:96562987-96563006 | None:intergenic | 50.0% | |
| TGGAGACACCCCTTTGCATT+TGG | + | Chr5:96563130-96563149 | MsG0580029403.01.T01:CDS | 50.0% | |
| ! | GCTTTTCCTTCTGCTTCACC+TGG | - | Chr5:96565342-96565361 | None:intergenic | 50.0% |
| GCAGCATGTTTGGCTGTTCC+AGG | + | Chr5:96565321-96565340 | MsG0580029403.01.T01:CDS | 55.0% | |
| GCTGTTCCAGGTGAAGCAGA+AGG | + | Chr5:96565333-96565352 | MsG0580029403.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 96562753 | 96565776 | 96562753 | ID=MsG0580029403.01;Name=MsG0580029403.01 |
| Chr5 | mRNA | 96562753 | 96565776 | 96562753 | ID=MsG0580029403.01.T01;Parent=MsG0580029403.01;Name=MsG0580029403.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|490 |
| Chr5 | exon | 96562753 | 96563349 | 96562753 | ID=MsG0580029403.01.T01:exon:24515;Parent=MsG0580029403.01.T01 |
| Chr5 | exon | 96564901 | 96565776 | 96564901 | ID=MsG0580029403.01.T01:exon:24516;Parent=MsG0580029403.01.T01 |
| Chr5 | CDS | 96562753 | 96563349 | 96562753 | ID=MsG0580029403.01.T01:cds;Parent=MsG0580029403.01.T01 |
| Chr5 | CDS | 96564901 | 96565776 | 96564901 | ID=MsG0580029403.01.T01:cds;Parent=MsG0580029403.01.T01 |
| Gene Sequence |
| Protein sequence |
