AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001804.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001804.01.T01 MTR_1g043350 97.143 210 6 0 1 210 1 210 2.16e-154 427
MsG0180001804.01.T01 MTR_1g074370 67.956 181 52 2 36 211 27 206 2.46e-70 214
MsG0180001804.01.T01 MTR_1g070000 49.451 182 75 3 38 214 50 219 6.18e-52 167
MsG0180001804.01.T01 MTR_1g070015 49.171 181 76 3 38 214 50 218 8.22e-51 164
MsG0180001804.01.T01 MTR_1g070020 50.838 179 75 5 36 207 26 198 9.71e-50 161
MsG0180001804.01.T01 MTR_1g069985 51.497 167 65 4 60 217 54 213 2.98e-49 160
MsG0180001804.01.T01 MTR_4g054740 56.164 146 51 3 75 207 90 235 8.28e-48 157
MsG0180001804.01.T01 MTR_4g054360 55.705 149 49 3 75 207 117 264 1.07e-47 158
MsG0180001804.01.T01 MTR_1g070035 43.458 214 88 6 15 214 21 215 9.42e-46 151
MsG0180001804.01.T01 MTR_7g096830 55.280 161 53 3 63 207 79 236 2.19e-44 148
MsG0180001804.01.T01 MTR_4g054860 54.667 150 51 4 75 207 124 273 4.54e-44 149
MsG0180001804.01.T01 MTR_1g069940 58.993 139 46 2 80 207 93 231 1.36e-42 144
MsG0180001804.01.T01 MTR_1g069945 58.273 139 47 2 80 207 99 237 4.58e-42 142
MsG0180001804.01.T01 MTR_7g096780 48.947 190 78 4 41 212 33 221 1.06e-41 141
MsG0180001804.01.T01 MTR_1g070045 53.147 143 58 4 36 176 23 158 4.07e-41 138
MsG0180001804.01.T01 MTR_2g015040 53.333 120 37 3 37 143 11 124 6.40e-36 124
MsG0180001804.01.T01 MTR_4g088005 51.923 104 49 1 37 139 11 114 1.03e-35 122
MsG0180001804.01.T01 MTR_2g015050 44.720 161 65 3 68 209 120 275 2.17e-33 121
MsG0180001804.01.T01 MTR_7g096750 81.667 60 11 0 82 141 20 79 1.26e-29 107
MsG0180001804.01.T01 MTR_7g096700 70.270 74 21 1 68 141 7 79 1.14e-28 105
MsG0180001804.01.T01 MTR_1g048610 56.842 95 36 1 53 147 65 154 1.25e-28 107
MsG0180001804.01.T01 MTR_1g070070 66.234 77 19 1 72 141 4 80 2.60e-28 104
MsG0180001804.01.T01 MTR_8g006840 44.275 131 43 2 37 139 54 182 2.70e-28 106
MsG0180001804.01.T01 MTR_4g100380 41.549 142 45 2 37 140 62 203 4.94e-28 107
MsG0180001804.01.T01 MTR_8g006815 49.138 116 43 2 82 193 96 199 1.58e-27 103
MsG0180001804.01.T01 MTR_1g074310 63.014 73 27 0 69 141 8 80 1.93e-27 102
MsG0180001804.01.T01 MTR_1g074230 71.212 66 19 0 76 141 13 78 2.49e-27 101
MsG0180001804.01.T01 MTR_7g081795 54.545 88 36 1 56 139 30 117 5.60e-27 102
MsG0180001804.01.T01 MTR_1g090290 58.242 91 32 2 56 141 83 172 1.07e-26 102
MsG0180001804.01.T01 MTR_7g081815 71.667 60 17 0 80 139 59 118 1.54e-25 99.0
MsG0180001804.01.T01 MTR_7g081805 71.667 60 17 0 80 139 59 118 2.51e-25 98.6
MsG0180001804.01.T01 MTR_8g006825 55.952 84 26 1 80 152 94 177 4.51e-25 97.8
MsG0180001804.01.T01 MTR_4g100450 73.333 60 16 0 82 141 154 213 5.17e-25 100
MsG0180001804.01.T01 MTR_4g100420 68.182 66 19 1 76 141 153 216 6.42e-25 99.8
MsG0180001804.01.T01 MTR_7g021010 63.014 73 24 2 72 144 4 73 2.72e-24 94.0
MsG0180001804.01.T01 MTR_7g021010 61.644 73 25 2 72 144 43 112 8.63e-24 93.6
MsG0180001804.01.T01 MTR_1g074250 70.968 62 17 1 79 139 16 77 1.05e-23 92.0
MsG0180001804.01.T01 MTR_4g086165 44.444 126 59 4 38 159 42 160 1.22e-23 94.4
MsG0180001804.01.T01 MTR_8g022820 50.000 90 44 1 52 141 94 182 3.09e-23 96.3
MsG0180001804.01.T01 MTR_8g022820 50.000 90 44 1 52 141 94 182 3.09e-23 96.3
MsG0180001804.01.T01 MTR_4g086160 46.364 110 47 3 82 191 96 193 3.83e-23 93.6
MsG0180001804.01.T01 MTR_7g020980 60.274 73 26 2 72 144 43 112 6.01e-23 91.7
MsG0180001804.01.T01 MTR_2g105380 51.111 90 43 1 52 141 87 175 6.47e-23 95.1
MsG0180001804.01.T01 MTR_2g438180 60.870 69 27 0 73 141 5 73 6.70e-23 90.1
MsG0180001804.01.T01 MTR_8g022820 52.326 86 40 1 56 141 97 181 6.93e-23 95.5
MsG0180001804.01.T01 MTR_4g086190 65.217 69 21 2 82 150 96 161 1.39e-22 92.0
MsG0180001804.01.T01 MTR_2g435590 52.439 82 38 1 58 139 72 152 4.84e-22 91.3
MsG0180001804.01.T01 MTR_1g087920 57.333 75 31 1 67 141 62 135 1.12e-21 90.9
MsG0180001804.01.T01 MTR_1g069960 75.000 60 15 0 82 141 27 86 1.33e-21 87.4
MsG0180001804.01.T01 MTR_8g092460 61.972 71 25 2 74 144 137 205 1.86e-21 90.5
MsG0180001804.01.T01 MTR_2g014300 62.121 66 24 1 82 147 15 79 4.15e-21 86.7
MsG0180001804.01.T01 MTR_5g009620 54.667 75 33 1 64 138 94 167 5.15e-21 89.4
MsG0180001804.01.T01 MTR_4g086220 61.111 72 25 2 82 153 96 164 1.17e-20 87.0
MsG0180001804.01.T01 MTR_3g090760 55.714 70 30 1 78 147 109 177 1.20e-20 89.0
MsG0180001804.01.T01 MTR_7g096810 63.889 72 23 1 82 153 13 81 1.31e-20 84.0
MsG0180001804.01.T01 MTR_5g085070 51.250 80 38 1 61 140 30 108 1.84e-20 87.4
MsG0180001804.01.T01 MTR_4g078710 51.190 84 34 2 62 139 2 84 2.18e-20 85.9
MsG0180001804.01.T01 MTR_3g053690 63.934 61 21 1 82 142 27 86 3.28e-20 85.5
MsG0180001804.01.T01 MTR_2g078680 66.102 59 19 1 82 140 31 88 4.67e-20 84.7
MsG0180001804.01.T01 MTR_1g040430 72.222 54 15 0 88 141 117 170 4.83e-20 84.3
MsG0180001804.01.T01 MTR_5g085100 66.102 59 19 1 82 140 46 103 5.38e-20 86.3
MsG0180001804.01.T01 MTR_5g032820 48.515 101 44 3 45 138 2 101 1.35e-19 85.9
MsG0180001804.01.T01 MTR_8g069360 70.175 57 16 1 82 138 44 99 1.65e-19 86.3
MsG0180001804.01.T01 MTR_5g075570 43.820 89 44 2 77 165 119 201 1.70e-19 84.7
MsG0180001804.01.T01 MTR_0939s0010 58.904 73 24 2 82 149 65 136 3.05e-19 82.4
MsG0180001804.01.T01 MTR_2g019750 37.500 128 72 4 82 207 50 171 4.86e-19 83.6
MsG0180001804.01.T01 MTR_3g102100 47.368 76 39 1 64 139 27 101 7.54e-19 80.5
MsG0180001804.01.T01 MTR_8g102800 52.778 72 33 1 68 139 23 93 9.40e-19 81.6
MsG0180001804.01.T01 MTR_2g014340 60.000 65 23 2 82 144 19 82 1.57e-18 80.5
MsG0180001804.01.T01 MTR_4g119270 50.575 87 41 2 52 138 24 108 2.02e-18 82.4
MsG0180001804.01.T01 MTR_7g084370 70.690 58 14 2 82 138 42 97 2.26e-18 81.6
MsG0180001804.01.T01 MTR_2g090235 65.000 60 20 1 80 139 216 274 2.31e-18 83.2
MsG0180001804.01.T01 MTR_3g074130 61.905 63 23 1 77 139 145 206 2.37e-18 82.4
MsG0180001804.01.T01 MTR_1g028560 60.000 60 23 1 79 138 112 170 2.95e-18 82.0
MsG0180001804.01.T01 MTR_8g006410 48.611 72 36 1 68 139 38 108 3.02e-18 79.7
MsG0180001804.01.T01 MTR_7g046260 51.389 72 34 1 68 139 47 117 3.05e-18 80.5
MsG0180001804.01.T01 MTR_2g089170 63.793 58 20 1 82 139 65 121 3.44e-18 79.3
MsG0180001804.01.T01 MTR_5g062700 61.905 63 23 1 77 139 168 229 3.89e-18 82.0
MsG0180001804.01.T01 MTR_2g101340 48.718 78 38 2 63 139 21 97 3.93e-18 79.7
MsG0180001804.01.T01 MTR_5g083340 56.944 72 26 2 82 149 85 155 4.48e-18 82.0
MsG0180001804.01.T01 MTR_1g090170 40.000 125 66 4 15 139 93 208 5.04e-18 81.3
MsG0180001804.01.T01 MTR_4g035430 43.820 89 49 1 53 141 3 90 8.59e-18 79.0
MsG0180001804.01.T01 MTR_1g090170 60.000 60 23 1 80 139 237 295 9.79e-18 81.3
MsG0180001804.01.T01 MTR_8g099215 50.000 78 38 1 61 138 86 162 1.08e-17 80.1
MsG0180001804.01.T01 MTR_5g008540 51.471 68 30 2 84 149 26 92 1.33e-17 75.1
MsG0180001804.01.T01 MTR_8g090350 58.730 63 25 1 77 139 108 169 1.59e-17 79.3
MsG0180001804.01.T01 MTR_4g111915 51.389 72 34 1 68 139 39 109 2.58e-17 75.9
MsG0180001804.01.T01 MTR_5g012910 54.286 70 30 2 71 139 16 84 2.69e-17 76.6
MsG0180001804.01.T01 MTR_4g114570 48.235 85 35 3 80 161 5 83 3.69e-17 77.0
MsG0180001804.01.T01 MTR_6g088405 57.377 61 25 1 79 139 41 100 6.55e-17 76.6
MsG0180001804.01.T01 MTR_4g112490 51.389 72 34 1 68 139 39 109 9.21e-17 75.9
MsG0180001804.01.T01 MTR_3g110205 55.738 61 26 1 79 139 40 99 9.65e-17 75.5
MsG0180001804.01.T01 MTR_4g100650 54.545 66 29 1 74 139 66 130 1.43e-16 76.3
MsG0180001804.01.T01 MTR_2g043050 49.367 79 35 3 62 139 1 75 2.20e-16 75.1
MsG0180001804.01.T01 MTR_1g019110 55.000 60 26 1 80 139 42 100 2.74e-16 73.9
MsG0180001804.01.T01 MTR_7g011630 40.777 103 44 3 77 163 37 138 6.72e-16 75.9
MsG0180001804.01.T01 MTR_8g013860 52.459 61 28 1 79 139 44 103 7.33e-16 73.6
MsG0180001804.01.T01 MTR_6g029180 45.122 82 44 1 57 138 8 88 8.12e-16 75.1
MsG0180001804.01.T01 MTR_1g014780 29.268 164 92 5 53 199 12 168 1.02e-15 73.6
MsG0180001804.01.T01 MTR_2g043030 48.101 79 36 3 62 139 1 75 1.14e-15 72.8
MsG0180001804.01.T01 MTR_7g117690 50.794 63 30 1 79 141 25 86 1.16e-15 72.0
MsG0180001804.01.T01 MTR_2g016730 47.368 76 39 1 65 140 6 80 1.26e-15 74.7
MsG0180001804.01.T01 MTR_8g032610 44.706 85 45 2 56 140 2 84 1.27e-15 74.3
MsG0180001804.01.T01 MTR_8g027465 44.156 77 42 1 65 141 22 97 1.37e-15 72.0
MsG0180001804.01.T01 MTR_1g014800 40.449 89 50 2 52 139 1 87 1.73e-15 72.8
MsG0180001804.01.T01 MTR_8g085960 53.226 62 28 1 77 138 20 80 1.99e-15 72.8
MsG0180001804.01.T01 MTR_5g083330 55.556 72 27 2 82 149 35 105 2.41e-15 73.6
MsG0180001804.01.T01 MTR_7g085810 50.746 67 32 1 72 138 20 85 2.94e-15 72.8
MsG0180001804.01.T01 MTR_1g014820 43.333 90 42 4 52 139 1 83 3.29e-15 72.8
MsG0180001804.01.T01 MTR_4g010640 54.688 64 22 2 80 140 5 64 3.45e-15 71.6
MsG0180001804.01.T01 MTR_1g014860 50.794 63 28 2 78 139 18 78 3.92e-15 71.6
MsG0180001804.01.T01 MTR_6g012970 56.667 60 25 1 79 138 35 93 4.96e-15 73.6
MsG0180001804.01.T01 MTR_7g092190 55.172 58 25 1 82 139 30 86 5.21e-15 72.4
MsG0180001804.01.T01 MTR_2g103700 54.098 61 27 1 80 140 5 64 5.49e-15 70.5
MsG0180001804.01.T01 MTR_1g006660 52.874 87 36 3 54 139 21 103 1.13e-14 71.2
MsG0180001804.01.T01 MTR_5g008470 51.613 62 27 2 84 143 77 137 1.50e-14 69.3
MsG0180001804.01.T01 MTR_5g082950 55.224 67 29 1 72 138 56 121 1.59e-14 71.6
MsG0180001804.01.T01 MTR_5g016750 37.000 100 57 2 78 177 21 114 1.86e-14 69.3
MsG0180001804.01.T01 MTR_3g105510 50.746 67 30 2 73 138 28 92 2.00e-14 70.1
MsG0180001804.01.T01 MTR_1g101600 43.678 87 46 2 54 138 11 96 2.01e-14 69.3
MsG0180001804.01.T01 MTR_3g106290 53.968 63 22 2 80 139 6 64 3.19e-14 68.6
MsG0180001804.01.T01 MTR_6g088425 44.330 97 41 2 55 139 10 105 3.75e-14 69.3
MsG0180001804.01.T01 MTR_2g043020 45.570 79 38 3 62 139 1 75 3.97e-14 68.6
MsG0180001804.01.T01 MTR_8g023680 50.000 68 33 1 56 123 90 156 4.09e-14 70.5
MsG0180001804.01.T01 MTR_1g074280 56.338 71 29 1 71 141 8 76 4.88e-14 66.6
MsG0180001804.01.T01 MTR_2g043040 54.237 59 24 2 82 139 19 75 6.95e-14 68.6
MsG0180001804.01.T01 MTR_3g098580 50.000 92 36 3 80 163 74 163 6.96e-14 68.9
MsG0180001804.01.T01 MTR_7g070220 55.556 63 22 2 82 138 78 140 9.19e-14 69.7
MsG0180001804.01.T01 MTR_6g466130 39.326 89 52 2 51 138 34 121 1.69e-13 67.4
MsG0180001804.01.T01 MTR_4g008860 52.459 61 28 1 79 139 5 64 2.30e-13 66.6
MsG0180001804.01.T01 MTR_6g465510 41.573 89 49 2 52 138 1 88 2.66e-13 66.6
MsG0180001804.01.T01 MTR_4g082345 50.000 62 30 1 77 138 43 103 3.33e-13 67.8
MsG0180001804.01.T01 MTR_6g465530 42.697 89 48 2 52 138 1 88 3.37e-13 66.2
MsG0180001804.01.T01 MTR_4g009260 47.222 108 41 4 46 143 36 137 3.97e-13 66.2
MsG0180001804.01.T01 MTR_6g465430 42.529 87 46 2 55 138 24 109 8.15e-13 65.9
MsG0180001804.01.T01 MTR_6g033255 61.111 72 25 2 68 139 8 76 9.55e-13 65.1
MsG0180001804.01.T01 MTR_4g102670 49.206 63 30 2 77 139 10 70 1.06e-12 64.3
MsG0180001804.01.T01 MTR_3g095190 66.667 60 19 1 80 139 168 226 1.23e-12 66.2
MsG0180001804.01.T01 MTR_6g465690 42.222 90 48 3 51 138 31 118 1.59e-12 65.1
MsG0180001804.01.T01 MTR_1g074290 61.667 60 23 0 82 141 17 76 1.69e-12 63.5
MsG0180001804.01.T01 MTR_6g466000 42.169 83 45 2 58 138 31 112 1.83e-12 64.7
MsG0180001804.01.T01 MTR_5g085125 54.237 59 26 1 82 140 16 73 4.01e-12 62.8
MsG0180001804.01.T01 MTR_7g028925 39.773 88 44 4 53 139 3 82 4.05e-12 60.8
MsG0180001804.01.T01 MTR_6g465420 41.379 87 47 2 55 138 24 109 4.09e-12 64.3
MsG0180001804.01.T01 MTR_1g097190 53.448 58 25 2 82 138 23 79 4.17e-12 62.0
MsG0180001804.01.T01 MTR_6g465460 48.438 64 32 1 75 138 47 109 5.52e-12 63.9
MsG0180001804.01.T01 MTR_6g465450 40.230 87 48 2 55 138 24 109 7.37e-12 63.2
MsG0180001804.01.T01 MTR_2g085015 43.548 62 34 1 79 139 44 105 1.05e-11 62.4
MsG0180001804.01.T01 MTR_3g017420 50.980 51 24 1 89 139 2 51 1.67e-11 58.5
MsG0180001804.01.T01 MTR_2g098180 37.755 98 49 3 82 171 171 264 1.90e-11 63.2
MsG0180001804.01.T01 MTR_1g074270 45.570 79 28 3 62 139 1 65 3.03e-11 58.9
MsG0180001804.01.T01 MTR_1g105400 42.647 68 38 1 56 123 89 155 3.88e-11 62.0
MsG0180001804.01.T01 MTR_6g465850 48.333 60 30 1 79 138 60 118 4.80e-11 61.2
MsG0180001804.01.T01 MTR_1g110970 46.970 66 34 1 56 121 71 135 6.20e-11 61.2
MsG0180001804.01.T01 MTR_3g105480 51.786 56 24 2 84 138 33 86 8.15e-11 60.1
MsG0180001804.01.T01 MTR_5g008790 46.032 63 31 2 79 139 15 76 8.31e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001804.01.T01 AT3G23240 58.685 213 79 4 5 211 4 213 2.96e-77 231
MsG0180001804.01.T01 AT2G31230 51.064 188 59 3 52 210 59 242 4.68e-51 166
MsG0180001804.01.T01 AT1G06160 55.488 164 38 2 80 209 80 242 4.07e-41 140
MsG0180001804.01.T01 AT5G43410 77.778 63 14 0 79 141 12 74 6.08e-31 110
MsG0180001804.01.T01 AT5G47220 50.000 128 40 3 37 140 48 175 3.08e-30 112
MsG0180001804.01.T01 AT4G17500 44.853 136 43 3 37 140 71 206 1.92e-28 108
MsG0180001804.01.T01 AT5G51190 50.485 103 50 1 54 155 44 146 1.25e-27 105
MsG0180001804.01.T01 AT5G47230 45.185 135 54 4 20 141 88 215 1.63e-27 106
MsG0180001804.01.T01 AT2G44840 43.590 117 51 2 37 139 34 149 4.26e-27 103
MsG0180001804.01.T01 AT3G23230 66.667 66 22 0 76 141 14 79 2.05e-26 99.4
MsG0180001804.01.T01 AT4G18450 49.541 109 45 4 80 178 108 216 6.42e-26 102
MsG0180001804.01.T01 AT4G17490 68.657 67 19 1 75 141 132 196 1.49e-25 100
MsG0180001804.01.T01 AT2G33710 52.874 87 40 1 53 139 41 126 4.54e-25 98.2
MsG0180001804.01.T01 AT2G33710 52.874 87 40 1 53 139 41 126 6.55e-25 98.2
MsG0180001804.01.T01 AT5G61600 64.516 62 22 0 80 141 86 147 1.55e-24 97.4
MsG0180001804.01.T01 AT5G07580 55.696 79 35 0 66 144 94 172 3.91e-24 95.5
MsG0180001804.01.T01 AT5G13330 51.648 91 40 3 54 144 13 99 1.11e-23 94.4
MsG0180001804.01.T01 AT4G11140 47.525 101 43 3 80 171 85 184 1.53e-23 95.9
MsG0180001804.01.T01 AT3G16770 56.098 82 33 2 58 139 57 135 3.05e-23 94.0
MsG0180001804.01.T01 AT3G23220 71.212 66 19 0 76 141 8 73 3.54e-23 91.3
MsG0180001804.01.T01 AT3G20310 57.143 84 33 3 82 164 27 108 7.10e-23 93.2
MsG0180001804.01.T01 AT5G61890 58.667 75 29 2 70 144 78 150 7.74e-23 93.2
MsG0180001804.01.T01 AT1G04370 78.333 60 13 0 82 141 20 79 8.50e-23 90.1
MsG0180001804.01.T01 AT2G47520 47.170 106 48 5 40 145 15 112 1.26e-22 90.5
MsG0180001804.01.T01 AT1G72360 55.556 72 31 1 70 141 13 83 2.71e-21 88.2
MsG0180001804.01.T01 AT4G06746 37.500 128 68 3 67 194 21 136 6.26e-21 85.5
MsG0180001804.01.T01 AT1G72360 55.556 72 31 1 70 141 62 132 9.40e-21 87.8
MsG0180001804.01.T01 AT5G13910 58.108 74 30 1 65 138 3 75 9.85e-21 86.7
MsG0180001804.01.T01 AT1G72360 55.556 72 31 1 70 141 64 134 1.06e-20 87.8
MsG0180001804.01.T01 AT4G27950 53.425 73 33 1 77 149 113 184 1.28e-20 88.6
MsG0180001804.01.T01 AT2G22200 43.548 124 63 4 16 139 11 127 1.70e-20 87.0
MsG0180001804.01.T01 AT5G61590 57.831 83 33 1 62 144 89 169 1.85e-20 85.5
MsG0180001804.01.T01 AT1G03800 64.407 59 20 1 82 140 53 110 2.76e-20 86.3
MsG0180001804.01.T01 AT4G28140 63.514 74 24 3 80 151 141 213 2.96e-20 87.0
MsG0180001804.01.T01 AT1G28370 43.434 99 46 3 45 143 30 118 3.06e-20 85.1
MsG0180001804.01.T01 AT1G22190 59.155 71 28 1 69 139 70 139 4.27e-20 85.9
MsG0180001804.01.T01 AT1G50640 54.930 71 31 1 82 152 28 97 5.31e-20 85.1
MsG0180001804.01.T01 AT1G36060 61.765 68 25 1 77 144 138 204 5.50e-20 86.7
MsG0180001804.01.T01 AT3G15210 56.000 75 30 2 68 140 9 82 8.81e-20 84.3
MsG0180001804.01.T01 AT5G18560 45.918 98 47 2 68 165 41 132 1.10e-19 86.3
MsG0180001804.01.T01 AT5G44210 51.899 79 37 1 62 140 13 90 1.22e-19 83.6
MsG0180001804.01.T01 AT3G61630 51.282 78 37 1 80 157 103 179 1.66e-19 85.1
MsG0180001804.01.T01 AT1G28370 48.780 82 40 2 62 143 1 80 2.01e-19 82.0
MsG0180001804.01.T01 AT1G28360 65.517 58 19 1 82 139 12 68 4.85e-19 81.6
MsG0180001804.01.T01 AT1G12890 56.579 76 30 2 64 138 3 76 5.30e-19 82.0
MsG0180001804.01.T01 AT4G23750 48.780 82 37 2 59 140 103 179 1.27e-18 83.2
MsG0180001804.01.T01 AT4G23750 48.780 82 37 2 59 140 103 179 1.27e-18 83.2
MsG0180001804.01.T01 AT1G78080 63.492 63 22 1 77 139 147 208 1.33e-18 83.2
MsG0180001804.01.T01 AT2G20880 63.333 60 21 1 80 139 185 243 1.61e-18 82.8
MsG0180001804.01.T01 AT3G11020 60.938 64 24 1 76 139 72 134 1.86e-18 82.4
MsG0180001804.01.T01 AT5G25390 60.317 63 21 1 80 142 5 63 2.21e-18 79.7
MsG0180001804.01.T01 AT4G13620 63.333 60 21 1 80 139 230 288 2.32e-18 82.8
MsG0180001804.01.T01 AT5G65130 60.317 63 24 1 77 139 106 167 3.04e-18 81.3
MsG0180001804.01.T01 AT5G65130 60.317 63 24 1 77 139 108 169 3.32e-18 81.3
MsG0180001804.01.T01 AT4G31060 49.275 69 34 1 74 142 19 86 4.40e-18 79.0
MsG0180001804.01.T01 AT4G39780 60.656 61 23 1 79 139 90 149 4.78e-18 80.5
MsG0180001804.01.T01 AT2G46310 43.269 104 43 4 82 170 99 201 4.96e-18 80.9
MsG0180001804.01.T01 AT1G22985 56.716 67 27 1 74 138 67 133 5.74e-18 78.2
MsG0180001804.01.T01 AT1G75490 43.434 99 48 3 52 148 10 102 7.51e-18 79.0
MsG0180001804.01.T01 AT5G25810 40.984 122 57 4 54 170 7 118 7.71e-18 79.0
MsG0180001804.01.T01 AT5G53290 44.828 87 47 1 54 140 97 182 8.47e-18 80.9
MsG0180001804.01.T01 AT1G28160 66.667 57 18 1 82 138 39 94 8.93e-18 79.3
MsG0180001804.01.T01 AT5G11590 52.703 74 33 2 67 139 35 107 9.58e-18 79.3
MsG0180001804.01.T01 AT5G25390 59.091 66 20 2 80 142 5 66 2.21e-17 77.4
MsG0180001804.01.T01 AT1G24590 66.667 57 18 1 82 138 58 113 2.70e-17 79.0
MsG0180001804.01.T01 AT1G12980 64.912 57 19 1 82 138 57 112 3.87e-17 79.0
MsG0180001804.01.T01 AT2G44940 50.704 71 34 1 69 139 87 156 4.39e-17 78.2
MsG0180001804.01.T01 AT1G46768 45.349 86 42 2 58 139 3 87 4.72e-17 75.5
MsG0180001804.01.T01 AT1G46768 45.349 86 42 2 58 139 3 87 4.72e-17 75.5
MsG0180001804.01.T01 AT1G46768 45.349 86 42 2 58 139 3 87 6.84e-17 74.7
MsG0180001804.01.T01 AT3G16280 56.452 62 26 1 78 139 57 117 6.88e-17 77.0
MsG0180001804.01.T01 AT3G16280 56.452 62 26 1 78 139 75 135 7.43e-17 77.0
MsG0180001804.01.T01 AT3G50260 50.769 65 31 1 75 139 14 77 9.33e-17 74.7
MsG0180001804.01.T01 AT3G60490 42.553 94 44 2 69 162 58 141 1.12e-16 76.6
MsG0180001804.01.T01 AT4G32800 50.667 75 33 2 65 139 5 75 1.18e-16 75.9
MsG0180001804.01.T01 AT4G16750 45.455 88 40 2 59 139 10 96 1.22e-16 75.1
MsG0180001804.01.T01 AT4G36900 53.968 63 28 1 77 139 25 86 1.23e-16 75.5
MsG0180001804.01.T01 AT5G19790 49.383 81 36 2 58 138 2 77 1.42e-16 76.3
MsG0180001804.01.T01 AT1G71450 46.154 78 41 1 62 139 4 80 2.16e-16 74.3
MsG0180001804.01.T01 AT5G05410 61.017 59 22 1 81 139 78 135 3.61e-16 75.9
MsG0180001804.01.T01 AT2G25820 60.345 58 22 1 82 139 26 82 3.81e-16 74.7
MsG0180001804.01.T01 AT2G35700 54.098 61 27 1 79 139 42 101 4.36e-16 73.9
MsG0180001804.01.T01 AT2G23340 49.254 67 33 1 73 139 19 84 4.44e-16 73.6
MsG0180001804.01.T01 AT5G05410 61.017 59 22 1 81 139 78 135 5.01e-16 75.9
MsG0180001804.01.T01 AT2G40340 60.345 58 22 1 82 139 14 70 1.31e-15 73.9
MsG0180001804.01.T01 AT2G40340 60.345 58 22 1 82 139 14 70 1.31e-15 73.9
MsG0180001804.01.T01 AT2G40340 60.345 58 22 1 82 139 14 70 1.31e-15 73.9
MsG0180001804.01.T01 AT1G01250 42.718 103 41 3 56 141 2 103 1.41e-15 72.4
MsG0180001804.01.T01 AT5G67190 50.794 63 30 1 77 139 16 77 1.85e-15 72.0
MsG0180001804.01.T01 AT4G34410 69.492 59 17 1 81 139 135 192 2.10e-15 73.2
MsG0180001804.01.T01 AT2G40340 60.345 58 22 1 82 139 72 128 2.39e-15 73.9
MsG0180001804.01.T01 AT2G40340 60.345 58 22 1 82 139 79 135 2.62e-15 73.9
MsG0180001804.01.T01 AT5G64750 66.071 56 17 2 89 144 192 245 2.82e-15 73.9
MsG0180001804.01.T01 AT2G40340 60.345 58 22 1 82 139 72 128 2.87e-15 73.2
MsG0180001804.01.T01 AT3G57600 55.172 58 25 1 82 139 28 84 2.90e-15 73.2
MsG0180001804.01.T01 AT1G71130 52.778 72 26 3 77 141 74 144 3.26e-15 70.9
MsG0180001804.01.T01 AT1G43160 54.878 82 36 1 80 161 59 139 3.71e-15 71.2
MsG0180001804.01.T01 AT2G40350 55.932 59 25 1 82 140 74 131 3.74e-15 70.9
MsG0180001804.01.T01 AT2G40350 55.932 59 25 1 82 140 67 124 3.81e-15 70.5
MsG0180001804.01.T01 AT5G50080 56.627 83 30 2 57 139 57 133 8.19e-15 70.9
MsG0180001804.01.T01 AT3G14230 59.740 77 30 1 66 142 107 182 8.51e-15 72.8
MsG0180001804.01.T01 AT3G14230 59.740 77 30 1 66 142 108 183 8.63e-15 72.8
MsG0180001804.01.T01 AT5G50080 56.627 83 30 2 57 139 66 142 8.82e-15 70.9
MsG0180001804.01.T01 AT1G15360 53.125 64 23 2 80 140 5 64 8.99e-15 70.5
MsG0180001804.01.T01 AT1G15360 53.125 64 23 2 80 140 5 64 8.99e-15 70.5
MsG0180001804.01.T01 AT3G14230 59.740 77 30 1 66 142 112 187 9.02e-15 72.4
MsG0180001804.01.T01 AT4G25480 50.746 67 32 1 72 138 41 106 1.16e-14 70.5
MsG0180001804.01.T01 AT5G07310 68.333 60 18 1 80 139 90 148 1.19e-14 71.2
MsG0180001804.01.T01 AT1G21910 45.588 68 36 1 82 149 50 116 3.85e-14 69.3
MsG0180001804.01.T01 AT4G25490 49.254 67 33 1 72 138 38 103 4.06e-14 68.9
MsG0180001804.01.T01 AT5G18450 41.237 97 55 2 81 177 33 127 4.21e-14 70.1
MsG0180001804.01.T01 AT5G21960 55.932 59 23 2 82 139 7 63 5.32e-14 68.6
MsG0180001804.01.T01 AT1G53910 60.811 74 26 2 71 144 114 184 6.68e-14 70.1
MsG0180001804.01.T01 AT4G25470 49.254 67 33 1 72 138 41 106 7.07e-14 68.2
MsG0180001804.01.T01 AT2G36450 49.315 73 34 3 68 139 2 72 7.14e-14 67.8
MsG0180001804.01.T01 AT1G53910 60.811 74 26 2 71 144 116 186 7.42e-14 69.7
MsG0180001804.01.T01 AT1G53910 60.811 74 26 2 71 144 116 186 7.42e-14 69.7
MsG0180001804.01.T01 AT1G12610 48.438 64 32 1 75 138 23 85 1.36e-13 67.4
MsG0180001804.01.T01 AT1G74930 46.575 73 35 3 68 139 8 77 1.84e-13 66.6
MsG0180001804.01.T01 AT1G63030 50.000 64 31 1 75 138 23 85 1.99e-13 66.6
MsG0180001804.01.T01 AT1G63030 50.000 64 31 1 75 138 23 85 1.99e-13 66.6
MsG0180001804.01.T01 AT5G51990 47.761 67 34 1 72 138 44 109 4.00e-13 66.2
MsG0180001804.01.T01 AT1G19210 49.153 59 27 2 82 139 12 68 1.14e-12 64.3
MsG0180001804.01.T01 AT5G25190 49.206 63 31 1 77 139 3 64 1.22e-12 64.3
MsG0180001804.01.T01 AT1G53170 62.712 59 21 1 82 140 31 88 5.02e-12 62.8
MsG0180001804.01.T01 AT1G77200 47.887 71 36 1 69 139 30 99 5.04e-12 63.5
MsG0180001804.01.T01 AT5G65510 37.755 98 49 3 82 171 232 325 1.50e-11 63.5
MsG0180001804.01.T01 AT5G65510 37.755 98 49 3 82 171 232 325 1.50e-11 63.5
MsG0180001804.01.T01 AT5G65510 37.755 98 49 3 82 171 174 267 1.52e-11 62.8
MsG0180001804.01.T01 AT5G65510 37.755 98 49 3 82 171 174 267 1.83e-11 63.2
MsG0180001804.01.T01 AT5G11190 45.000 100 45 3 80 173 5 100 3.17e-11 60.5
MsG0180001804.01.T01 AT1G22810 43.662 71 35 3 72 139 4 72 3.37e-11 59.7
MsG0180001804.01.T01 AT3G25730 33.981 103 60 2 82 184 62 156 4.27e-11 61.6

Find 27 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGTTAGGTTTGATAATT+TGG 0.175949 1:-27251048 MsG0180001804.01.T01:CDS
AGATCTTGGTGCTGATTATT+TGG 0.227126 1:-27251015 MsG0180001804.01.T01:CDS
ACATTCTATGAAACGTAAAA+TGG 0.300471 1:-27251096 MsG0180001804.01.T01:CDS
CCATATAGAAGCATCTCTTC+TGG 0.335356 1:+27251473 None:intergenic
TTTCTCTTCAAAGCAATAAC+AGG 0.346403 1:+27251119 None:intergenic
GAAACTCGTTATGGTTCTTC+GGG 0.356529 1:+27251516 None:intergenic
AGAAACTCGTTATGGTTCTT+CGG 0.370589 1:+27251515 None:intergenic
CCAGAAGAGATGCTTCTATA+TGG 0.374777 1:-27251473 MsG0180001804.01.T01:CDS
TTGGTTGTGTTTGAAGATCT+TGG 0.399605 1:-27251029 MsG0180001804.01.T01:CDS
AGAAACATGACACAGATGTT+AGG 0.402912 1:-27251061 MsG0180001804.01.T01:CDS
CTAGACATGGCATAAGAGTA+TGG 0.406291 1:-27251301 MsG0180001804.01.T01:CDS
CATATAGAAGCATCTCTTCT+GGG 0.422092 1:+27251474 None:intergenic
GTCTTCTGATTCAAAATCCT+TGG 0.441062 1:-27250979 MsG0180001804.01.T01:CDS
GAACGCCTCGATAAGATTTG+TGG 0.460267 1:+27251369 None:intergenic
AAAAGGTTAAGGAATCACTT+AGG 0.463233 1:-27251181 MsG0180001804.01.T01:CDS
TGAAAGGGAGAAACTCGTTA+TGG 0.467154 1:+27251507 None:intergenic
TTGCTTAGGGTTTGTTCTTG+TGG 0.476996 1:+27251434 None:intergenic
AAAGGTTAAGGAATCACTTA+GGG 0.485766 1:-27251180 MsG0180001804.01.T01:CDS
CATGGCATAAGAGTATGGTT+AGG 0.543664 1:-27251296 MsG0180001804.01.T01:CDS
AGGCGTTCGACGTAGACCAT+GGG 0.555394 1:-27251354 MsG0180001804.01.T01:CDS
CAAATTACATTAATTCACCA+AGG 0.609277 1:+27250962 None:intergenic
TGTGACCCAAATGAAGATTG+TGG 0.612971 1:+27251557 None:intergenic
GAGGCGTTCGACGTAGACCA+TGG 0.620635 1:-27251355 MsG0180001804.01.T01:CDS
GGCGTTCGACGTAGACCATG+GGG 0.635082 1:-27251353 MsG0180001804.01.T01:CDS
ATAAGAGATTCAACTAGACA+TGG 0.660383 1:-27251314 MsG0180001804.01.T01:CDS
AAGAACCACAAATCTTATCG+AGG 0.675409 1:-27251374 MsG0180001804.01.T01:CDS
GCGTTCGACGTAGACCATGG+GGG 0.753012 1:-27251352 MsG0180001804.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGATTTTGATGAGA+AGG + Chr1:27250993-27251012 None:intergenic 20.0%
!!! AAATTTGATTTTGATGAGAA+GGG + Chr1:27250992-27251011 None:intergenic 20.0%
! ACATTCTATGAAACGTAAAA+TGG - Chr1:27251477-27251496 MsG0180001804.01.T01:CDS 25.0%
!! ACTTAATTTTCCAGTTGAAA+AGG - Chr1:27251375-27251394 MsG0180001804.01.T01:CDS 25.0%
!! AGATGTTAGGTTTGATAATT+TGG - Chr1:27251525-27251544 MsG0180001804.01.T01:CDS 25.0%
!! TTTTTCCACAATCTTCATTT+GGG - Chr1:27251011-27251030 MsG0180001804.01.T01:CDS 25.0%
!!! TTTTTTCCACAATCTTCATT+TGG - Chr1:27251010-27251029 MsG0180001804.01.T01:CDS 25.0%
AAAAGGTTAAGGAATCACTT+AGG - Chr1:27251392-27251411 MsG0180001804.01.T01:CDS 30.0%
AAAGGTTAAGGAATCACTTA+GGG - Chr1:27251393-27251412 MsG0180001804.01.T01:CDS 30.0%
ATAAGAGATTCAACTAGACA+TGG - Chr1:27251259-27251278 MsG0180001804.01.T01:CDS 30.0%
TTTCTCTTCAAAGCAATAAC+AGG + Chr1:27251457-27251476 None:intergenic 30.0%
! TTTTCCAGTTGAAAAGGTTA+AGG - Chr1:27251381-27251400 MsG0180001804.01.T01:CDS 30.0%
!!! TTCATTGCTAGTTTTGCTTA+GGG + Chr1:27251155-27251174 None:intergenic 30.0%
!!! TTTCATTGCTAGTTTTGCTT+AGG + Chr1:27251156-27251175 None:intergenic 30.0%
AAGAACCACAAATCTTATCG+AGG - Chr1:27251199-27251218 MsG0180001804.01.T01:CDS 35.0%
AGAAACATGACACAGATGTT+AGG - Chr1:27251512-27251531 MsG0180001804.01.T01:CDS 35.0%
AGAAACTCGTTATGGTTCTT+CGG + Chr1:27251061-27251080 None:intergenic 35.0%
GTCTTCTGATTCAAAATCCT+TGG - Chr1:27251594-27251613 MsG0180001804.01.T01:CDS 35.0%
TTGGTTGTGTTTGAAGATCT+TGG - Chr1:27251544-27251563 MsG0180001804.01.T01:CDS 35.0%
! GATTCCTTAACCTTTTCAAC+TGG + Chr1:27251388-27251407 None:intergenic 35.0%
!! AGATCTTGGTGCTGATTATT+TGG - Chr1:27251558-27251577 MsG0180001804.01.T01:CDS 35.0%
!! CATATAGAAGCATCTCTTCT+GGG + Chr1:27251102-27251121 None:intergenic 35.0%
!! TTTTGATGAGAAGGGTATGA+AGG + Chr1:27250984-27251003 None:intergenic 35.0%
CCAGAAGAGATGCTTCTATA+TGG - Chr1:27251100-27251119 MsG0180001804.01.T01:CDS 40.0%
CTAGACATGGCATAAGAGTA+TGG - Chr1:27251272-27251291 MsG0180001804.01.T01:CDS 40.0%
GAAACTCGTTATGGTTCTTC+GGG + Chr1:27251060-27251079 None:intergenic 40.0%
TGAAAGGGAGAAACTCGTTA+TGG + Chr1:27251069-27251088 None:intergenic 40.0%
TGTGACCCAAATGAAGATTG+TGG + Chr1:27251019-27251038 None:intergenic 40.0%
! CATGGCATAAGAGTATGGTT+AGG - Chr1:27251277-27251296 MsG0180001804.01.T01:CDS 40.0%
! TTGCTTAGGGTTTGTTCTTG+TGG + Chr1:27251142-27251161 None:intergenic 40.0%
!! CCATATAGAAGCATCTCTTC+TGG + Chr1:27251103-27251122 None:intergenic 40.0%
!! CTGGGTCGTTTTCATTGAAA+GGG + Chr1:27251084-27251103 None:intergenic 40.0%
!! TCTGGGTCGTTTTCATTGAA+AGG + Chr1:27251085-27251104 None:intergenic 40.0%
!!! CAAGCTGCTTTTTCAATGAG+AGG - Chr1:27251340-27251359 MsG0180001804.01.T01:CDS 40.0%
GAACGCCTCGATAAGATTTG+TGG + Chr1:27251207-27251226 None:intergenic 45.0%
TCTGCTGCAAATTTCCCCCA+TGG + Chr1:27251238-27251257 None:intergenic 50.0%
AGGCGTTCGACGTAGACCAT+GGG - Chr1:27251219-27251238 MsG0180001804.01.T01:CDS 55.0%
GCGTTCGACGTAGACCATGG+GGG - Chr1:27251221-27251240 MsG0180001804.01.T01:CDS 60.0%
GGCGTTCGACGTAGACCATG+GGG - Chr1:27251220-27251239 MsG0180001804.01.T01:CDS 60.0%
! GAGGCGTTCGACGTAGACCA+TGG - Chr1:27251218-27251237 MsG0180001804.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 27250971 27251624 27250971 ID=MsG0180001804.01;Name=MsG0180001804.01
Chr1 mRNA 27250971 27251624 27250971 ID=MsG0180001804.01.T01;Parent=MsG0180001804.01;Name=MsG0180001804.01.T01;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|217
Chr1 exon 27250971 27251624 27250971 ID=MsG0180001804.01.T01:exon:34836;Parent=MsG0180001804.01.T01
Chr1 CDS 27250971 27251624 27250971 ID=MsG0180001804.01.T01:cds;Parent=MsG0180001804.01.T01
Gene Sequence

>MsG0180001804.01.T01

ATGGATTGTTCCTTCATACCCTTCTCATCAAAATCAAATTTTTTTCCACAATCTTCATTTGGGTCACAAGATTCAATCTCTATGAACCCGAAGAACCATAACGAGTTTCTCCCTTTCAATGAAAACGACCCAGAAGAGATGCTTCTATATGGCATGATAACTTCATCACCACAAGAACAAACCCTAAGCAAAACTAGCAATGAAAAAACAACAAAGAATAACAAAGATAAGAACCACAAATCTTATCGAGGCGTTCGACGTAGACCATGGGGGAAATTTGCAGCAGAAATAAGAGATTCAACTAGACATGGCATAAGAGTATGGTTAGGAACATTTGATAGTGCTGAAGCAGCAGCACTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCATCTGCAACACTTAATTTTCCAGTTGAAAAGGTTAAGGAATCACTTAGGGACATGAATTATGTGTTGTCTAATGATAATGAGTGTTCACCTGTTATTGCTTTGAAGAGAAAACATTCTATGAAACGTAAAATGGATGAAAAGAAGAAGAAACATGACACAGATGTTAGGTTTGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATGTCTTCTGATTCAAAATCCTTGGTGAATTAA
Protein sequence

>MsG0180001804.01.T01

MDCSFIPFSSKSNFFPQSSFGSQDSISMNPKNHNEFLPFNENDPEEMLLYGMITSSPQEQTLSKTSNEKTTKNNKDKNHKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFPVEKVKESLRDMNYVLSNDNECSPVIALKRKHSMKRKMDEKKKKHDTDVRFDNLVVFEDLGADYLEQLLMSSDSKSLVN*