AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029758.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029758.01.T01 MTR_5g092060 91.554 296 18 3 1 296 1 289 0.0 517
MsG0580029758.01.T01 MTR_4g047870 58.052 267 100 4 31 296 21 276 3.13e-99 293
MsG0580029758.01.T01 MTR_2g005510 25.000 172 121 2 108 279 16 179 7.27e-13 67.0
MsG0580029758.01.T01 MTR_3g064390 28.902 173 111 4 106 276 9 171 1.10e-12 66.2
MsG0580029758.01.T01 MTR_2g083860 26.203 187 121 6 98 279 3 177 1.57e-12 65.9
MsG0580029758.01.T01 MTR_1g078200 24.457 184 130 3 96 279 4 178 1.59e-12 66.2
MsG0580029758.01.T01 MTR_5g013900 25.287 174 122 3 103 276 5 170 4.44e-12 64.3
MsG0580029758.01.T01 MTR_4g064897 26.857 175 114 4 108 279 13 176 5.79e-12 64.3
MsG0580029758.01.T01 MTR_1g068730 25.731 171 115 4 101 269 10 170 7.71e-12 63.9
MsG0580029758.01.T01 MTR_5g076590 28.902 173 111 4 106 276 9 171 8.55e-12 63.5
MsG0580029758.01.T01 MTR_1g068740 25.731 171 115 4 101 269 10 170 1.09e-11 63.5
MsG0580029758.01.T01 MTR_3g069510 28.000 175 112 4 108 279 13 176 1.35e-11 63.2
MsG0580029758.01.T01 MTR_4g098950 24.571 175 122 4 103 276 5 170 1.95e-11 62.8
MsG0580029758.01.T01 MTR_7g100020 25.000 164 112 3 108 269 16 170 2.06e-11 62.8
MsG0580029758.01.T01 MTR_2g075950 25.806 186 123 5 98 279 3 177 2.39e-11 62.8
MsG0580029758.01.T01 MTR_7g051940 24.277 173 119 4 108 278 14 176 2.44e-11 62.4
MsG0580029758.01.T01 MTR_3g086980 25.714 175 116 5 108 279 17 180 4.30e-11 62.0
MsG0580029758.01.T01 MTR_4g079350 23.077 195 139 4 98 291 3 187 4.65e-11 61.6
MsG0580029758.01.T01 MTR_1g115325 24.390 164 113 3 108 269 16 170 5.55e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029758.01.T01 AT5G54840 59.333 300 104 7 1 296 1 286 1.25e-108 317
MsG0580029758.01.T01 AT3G21700 51.667 300 122 7 12 296 1 292 8.87e-97 287
MsG0580029758.01.T01 AT3G21700 51.333 300 122 8 12 296 1 291 1.69e-94 281
MsG0580029758.01.T01 AT3G21700 45.528 246 110 8 12 242 1 237 1.29e-58 188
MsG0580029758.01.T01 AT5G54840 51.942 206 85 5 1 202 1 196 7.93e-54 175
MsG0580029758.01.T01 AT5G54840 51.942 206 85 5 1 202 1 196 1.73e-53 174
MsG0580029758.01.T01 AT1G09630 25.128 195 129 3 108 293 13 199 1.53e-13 68.9
MsG0580029758.01.T01 AT5G59150 26.111 180 124 3 100 279 6 176 1.59e-13 68.9
MsG0580029758.01.T01 AT2G44610 24.713 174 123 2 103 276 5 170 2.94e-13 67.8
MsG0580029758.01.T01 AT1G07410 25.434 173 119 3 108 279 13 176 4.52e-13 67.4
MsG0580029758.01.T01 AT1G16920 24.365 197 134 5 98 291 3 187 2.48e-12 65.5
MsG0580029758.01.T01 AT4G39890 24.138 174 125 3 103 276 5 171 3.14e-12 65.1
MsG0580029758.01.T01 AT5G45130 28.324 173 112 4 106 276 9 171 3.53e-12 64.7
MsG0580029758.01.T01 AT4G18800 26.344 186 122 5 98 279 3 177 4.25e-12 64.7
MsG0580029758.01.T01 AT5G47520 24.419 172 122 2 108 279 15 178 4.39e-12 64.7
MsG0580029758.01.T01 AT4G19640 28.324 173 112 4 106 276 9 171 4.83e-12 64.3
MsG0580029758.01.T01 AT3G46830 27.011 174 115 3 108 279 13 176 5.34e-12 64.3
MsG0580029758.01.T01 AT3G46830 27.011 174 115 3 108 279 13 176 5.34e-12 64.3
MsG0580029758.01.T01 AT5G03520 25.731 171 115 4 101 269 10 170 6.91e-12 64.3
MsG0580029758.01.T01 AT1G05810 25.287 174 116 5 108 278 13 175 7.11e-12 64.3
MsG0580029758.01.T01 AT5G65270 26.178 191 123 6 95 279 3 181 1.30e-11 63.5
MsG0580029758.01.T01 AT1G05810 25.287 174 116 5 108 278 59 221 1.58e-11 63.9
MsG0580029758.01.T01 AT5G59840 25.882 170 114 4 108 275 16 175 2.07e-11 62.8
MsG0580029758.01.T01 AT4G39990 26.590 173 115 4 108 278 18 180 2.59e-11 62.8
MsG0580029758.01.T01 AT2G31680 25.000 172 117 4 108 277 13 174 3.37e-11 62.4
MsG0580029758.01.T01 AT3G46060 25.000 164 112 3 108 269 16 170 3.70e-11 62.0
MsG0580029758.01.T01 AT3G46060 25.000 164 112 3 108 269 16 170 3.70e-11 62.0
MsG0580029758.01.T01 AT3G46060 25.000 164 112 3 108 269 16 170 3.70e-11 62.0
MsG0580029758.01.T01 AT3G09900 25.146 171 116 4 101 269 10 170 4.79e-11 61.6
MsG0580029758.01.T01 AT2G43130 24.855 173 118 4 108 278 13 175 6.19e-11 61.2
MsG0580029758.01.T01 AT5G45750 25.806 186 123 5 98 279 3 177 8.66e-11 60.8
MsG0580029758.01.T01 AT1G06400 25.946 185 124 5 98 279 3 177 9.45e-11 60.8
MsG0580029758.01.T01 AT3G53610 25.294 170 115 4 108 275 16 175 9.54e-11 60.8
MsG0580029758.01.T01 AT3G53610 25.294 170 115 4 108 275 16 175 9.54e-11 60.8
MsG0580029758.01.T01 AT3G53610 25.294 170 115 4 108 275 16 175 9.54e-11 60.8
MsG0580029758.01.T01 AT4G19640 30.108 93 65 0 106 198 9 101 9.71e-11 59.7

Find 81 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTTAGAAGTCAATTA+TGG 0.162376 5:+101596910 None:intergenic
GCAGAGTTGTGTCATCTTCT+TGG 0.184949 5:+101599325 None:intergenic
AATGGAAGGATTGAATTTAA+TGG 0.251785 5:-101598665 MsG0580029758.01.T01:CDS
ACAATTGTCCATTGTAAATC+TGG 0.259047 5:+101597314 None:intergenic
GAACAACAGCATACCAATAA+TGG 0.260980 5:-101599080 MsG0580029758.01.T01:CDS
TTCTTTCTTGTTGTTGATGA+TGG 0.271451 5:+101599509 None:intergenic
ATCTGACTCATACCCATTAT+TGG 0.276525 5:+101599067 None:intergenic
GGCCAAAGCCACGTGTATTT+TGG 0.288708 5:-101596651 MsG0580029758.01.T01:three_prime_UTR
CCTCTAAAATGTAGTCAAAA+TGG 0.293282 5:+101596741 None:intergenic
GTTCATTTGGAATAAACTTA+TGG 0.296115 5:-101599231 MsG0580029758.01.T01:CDS
ATAAGAGGAAGAAACAAAAT+TGG 0.309419 5:-101596840 MsG0580029758.01.T01:three_prime_UTR
TGTACTTCTCTACTTTAGTT+TGG 0.329200 5:-101599589 None:intergenic
ATTGGTATAATTTCCTTAGT+TGG 0.353029 5:-101596678 MsG0580029758.01.T01:three_prime_UTR
ACAATTTAGAAGTCAATTAT+GGG 0.359970 5:+101596911 None:intergenic
ACTGCAATTCCCATTCTAAT+AGG 0.364632 5:-101597368 MsG0580029758.01.T01:CDS
TTGTTGGGTGATTGCCATAT+TGG 0.368640 5:-101599017 MsG0580029758.01.T01:CDS
TGAAATAGAAATACATTAAG+TGG 0.373620 5:-101599551 MsG0580029758.01.T01:five_prime_UTR
CAAAGCTCTTTAACTTGCCT+TGG 0.379264 5:-101596964 MsG0580029758.01.T01:CDS
AAACTTATGGTTTGTTCTGT+TGG 0.381679 5:-101599218 MsG0580029758.01.T01:CDS
TACCAAAATACACGTGGCTT+TGG 0.384826 5:+101596649 None:intergenic
ATAGAAAGAAATTTGAAAGT+TGG 0.387772 5:-101596938 MsG0580029758.01.T01:CDS
TTGGTATAATTTCCTTAGTT+GGG 0.391503 5:-101596677 MsG0580029758.01.T01:three_prime_UTR
AAACTTGGTTCCTATTAGAA+TGG 0.395511 5:+101597358 None:intergenic
AACCTTAAGATTAGTTTGTT+GGG 0.398052 5:-101599032 MsG0580029758.01.T01:CDS
TGTTGGGTGATTGCCATATT+GGG 0.408372 5:-101599016 MsG0580029758.01.T01:CDS
TTAAATATGGTATGCTTCAA+AGG 0.410439 5:-101599280 MsG0580029758.01.T01:CDS
AGCCATGGGAATTTGATCTA+AGG 0.420504 5:+101598402 None:intergenic
GACAAAACTTTGTATGTTCA+AGG 0.421423 5:-101598643 MsG0580029758.01.T01:CDS
ACTCTGCAGGAAAATTGTTC+AGG 0.422078 5:-101599309 MsG0580029758.01.T01:CDS
GTGTTGCACTTGAAAAGAAA+AGG 0.422846 5:+101597026 None:intergenic
TCTTTCTTGTTGTTGATGAT+GGG 0.427108 5:+101599510 None:intergenic
CACCCAACAAACTAATCTTA+AGG 0.431894 5:+101599030 None:intergenic
CAATTGTCCATTGTAAATCT+GGG 0.433079 5:+101597315 None:intergenic
AACAACAGCATACCAATAAT+GGG 0.438949 5:-101599079 MsG0580029758.01.T01:CDS
TCTCCGGCTACGGTTGATGA+TGG 0.441368 5:-101599113 MsG0580029758.01.T01:CDS
AACTGCATCTTTACAAGCCA+TGG 0.445088 5:+101598387 None:intergenic
CCTAAAATAACACGTAGATT+AGG 0.446565 5:+101596764 None:intergenic
GTTGTTGATGATGGGGCGTT+TGG 0.452047 5:+101599518 None:intergenic
GGCTTATGCAAGGGCAATGA+AGG 0.452873 5:-101597053 MsG0580029758.01.T01:CDS
GAACCTTAAGATTAGTTTGT+TGG 0.454454 5:-101599033 MsG0580029758.01.T01:CDS
AGAAAAGAGGAGTTTGCAAA+TGG 0.455607 5:-101598683 MsG0580029758.01.T01:CDS
AACTTGGTTCCTATTAGAAT+GGG 0.455621 5:+101597359 None:intergenic
TAAATATGGTATGCTTCAAA+GGG 0.463208 5:-101599279 MsG0580029758.01.T01:CDS
GCCGTTGTCGCCGCCGTCTC+CGG 0.465432 5:-101599129 MsG0580029758.01.T01:CDS
GTCGCCGCCGTCTCCGGCTA+CGG 0.469833 5:-101599123 MsG0580029758.01.T01:CDS
AAATAAGAGAGGAAAATAAG+AGG 0.487252 5:-101596855 MsG0580029758.01.T01:three_prime_UTR
AAGAGGAGTTTGCAAATGGA+AGG 0.488557 5:-101598679 MsG0580029758.01.T01:CDS
TTCATATTGACTTGCTAGGA+AGG 0.504912 5:-101596789 MsG0580029758.01.T01:three_prime_UTR
GCTTTGGCCTCACCCAACTA+AGG 0.514300 5:+101596665 None:intergenic
ATAATTTCCTTAGTTGGGTG+AGG 0.519174 5:-101596672 MsG0580029758.01.T01:three_prime_UTR
GTATGAGTCAGATTCTGATT+TGG 0.522092 5:-101599057 MsG0580029758.01.T01:CDS
ATAACATCACATTATCCTAA+AGG 0.525994 5:-101596595 MsG0580029758.01.T01:three_prime_UTR
CTAAAGGAAAGGAAGAGAAA+AGG 0.526341 5:-101596579 MsG0580029758.01.T01:three_prime_UTR
AAATTTCTTTCTATCGTCCA+AGG 0.528916 5:+101596947 None:intergenic
AAACCATCATCAACCGTAGC+CGG 0.529864 5:+101599110 None:intergenic
TCTAACAAAATCATCAAACT+TGG 0.542555 5:+101597343 None:intergenic
AGAAGATGACACAACTCTGC+AGG 0.552513 5:-101599322 MsG0580029758.01.T01:CDS
GCCGGAGACGGCGGCGACAA+CGG 0.555503 5:+101599128 None:intergenic
TGAACAAAGCCATATCTCAA+TGG 0.558554 5:-101599369 MsG0580029758.01.T01:exon
TACAGGCAAGGGCTTATGCA+AGG 0.559748 5:-101597063 MsG0580029758.01.T01:intron
TGTTGCACTTGAAAAGAAAA+GGG 0.560066 5:+101597027 None:intergenic
TAGGAAATGAGGTAGAAAAG+AGG 0.564038 5:-101598696 MsG0580029758.01.T01:CDS
GTCCTTAGATCAAATTCCCA+TGG 0.564993 5:-101598404 MsG0580029758.01.T01:CDS
TCATCAACCGTAGCCGGAGA+CGG 0.574660 5:+101599116 None:intergenic
AATTGTCCATTGTAAATCTG+GGG 0.582951 5:+101597316 None:intergenic
ATCACATTATCCTAAAGGAA+AGG 0.588853 5:-101596590 MsG0580029758.01.T01:three_prime_UTR
GATCAAGTACGTAGGAAATG+AGG 0.589406 5:-101598707 MsG0580029758.01.T01:CDS
GAAATAGAAATACATTAAGT+GGG 0.592211 5:-101599550 MsG0580029758.01.T01:five_prime_UTR
CTTTCTTGTTGTTGATGATG+GGG 0.592367 5:+101599511 None:intergenic
ACAATGGACAATTGTAACAC+AGG 0.603332 5:-101597306 MsG0580029758.01.T01:intron
AAGAAGAACAAGAAGAAGAG+AGG 0.606686 5:-101599441 MsG0580029758.01.T01:five_prime_UTR
GAGGGTGATGAGAACATGAA+TGG 0.615850 5:-101596722 MsG0580029758.01.T01:three_prime_UTR
TCTATTTCACACAGAAACAG+AGG 0.619681 5:+101599565 None:intergenic
ACAGGCAAGGGCTTATGCAA+GGG 0.634009 5:-101597062 MsG0580029758.01.T01:intron
ACTGCATCTTTACAAGCCAT+GGG 0.635433 5:+101598388 None:intergenic
ATTGTCCATTGTAAATCTGG+GGG 0.655553 5:+101597317 None:intergenic
TCAACCGTAGCCGGAGACGG+CGG 0.662086 5:+101599119 None:intergenic
TAGTACATATAAAATAAGAG+AGG 0.665429 5:-101596866 MsG0580029758.01.T01:three_prime_UTR
ACAAAATACCAAAATACACG+TGG 0.703835 5:+101596643 None:intergenic
TCTGCAAATTGAATGTAACA+TGG 0.715034 5:+101597390 None:intergenic
TGATGAGAACATGAATGGTG+TGG 0.718371 5:-101596717 MsG0580029758.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAATATAGTAATATTT+CGG + Chr5:101598275-101598294 None:intergenic 10.0%
!! AAAAAAAAGGACTAATATAT+GGG - Chr5:101598183-101598202 MsG0580029758.01.T01:intron 15.0%
!! AAAACATAATACATCTAATT+AGG + Chr5:101598725-101598744 None:intergenic 15.0%
!! AAACATAATACATCTAATTA+GGG + Chr5:101598724-101598743 None:intergenic 15.0%
!!! AAAAGTAACACTTTATTTAA+AGG + Chr5:101599012-101599031 None:intergenic 15.0%
!!! ATCATTTAACTTAACATTTT+TGG - Chr5:101597934-101597953 MsG0580029758.01.T01:intron 15.0%
!!! ATTAGATGTATTATGTTTTA+TGG - Chr5:101598726-101598745 MsG0580029758.01.T01:intron 15.0%
!!! TAAGGAAACATTTTAAATAA+AGG - Chr5:101597990-101598009 MsG0580029758.01.T01:intron 15.0%
!!! TAAGTTTTATAGGAATATAA+TGG - Chr5:101598304-101598323 MsG0580029758.01.T01:intron 15.0%
!!! TTACTTTTTACCATATTATT+TGG - Chr5:101599024-101599043 MsG0580029758.01.T01:CDS 15.0%
!!! TTTTATGCTATAAGTTTTAT+AGG - Chr5:101598294-101598313 MsG0580029758.01.T01:intron 15.0%
!!! TTTTTTAAGTTAGTTATTGA+TGG - Chr5:101597688-101597707 MsG0580029758.01.T01:intron 15.0%
!! AACAATTTAGAAGTCAATTA+TGG + Chr5:101599244-101599263 None:intergenic 20.0%
!! AATAACAAAGCCAAATAATA+TGG + Chr5:101599037-101599056 None:intergenic 20.0%
!! ACAATTTAGAAGTCAATTAT+GGG + Chr5:101599243-101599262 None:intergenic 20.0%
!! ATAGAAAGAAATTTGAAAGT+TGG - Chr5:101599213-101599232 MsG0580029758.01.T01:CDS 20.0%
!! ATTGATGGAAAATTATTATG+TGG - Chr5:101597703-101597722 MsG0580029758.01.T01:intron 20.0%
!! CTATATGTATTCGAAAAAAA+AGG - Chr5:101598170-101598189 MsG0580029758.01.T01:intron 20.0%
!! GAAAAAAAAGGACTAATATA+TGG - Chr5:101598182-101598201 MsG0580029758.01.T01:intron 20.0%
!! GAAATAGAAATACATTAAGT+GGG - Chr5:101596601-101596620 MsG0580029758.01.T01:three_prime_UTR 20.0%
!! TAAAAAATAAATGCAGAACA+TGG + Chr5:101597615-101597634 None:intergenic 20.0%
!! TAACCTCAAAATTAAGTAAA+TGG + Chr5:101597880-101597899 None:intergenic 20.0%
!! TAAGTAAATGGAAAAAAAGA+AGG + Chr5:101597868-101597887 None:intergenic 20.0%
!! TAGTACATATAAAATAAGAG+AGG - Chr5:101599285-101599304 MsG0580029758.01.T01:CDS 20.0%
!! TCGAAAATCATATAATTCAA+AGG + Chr5:101597336-101597355 None:intergenic 20.0%
!! TGAAATAGAAATACATTAAG+TGG - Chr5:101596600-101596619 MsG0580029758.01.T01:three_prime_UTR 20.0%
!! TTCTTACTATAATAGTTCAA+AGG + Chr5:101598524-101598543 None:intergenic 20.0%
!! TTGATGGAAAATTATTATGT+GGG - Chr5:101597704-101597723 MsG0580029758.01.T01:intron 20.0%
!! TTTACCTTAAATGTTGAAAT+GGG - Chr5:101597190-101597209 MsG0580029758.01.T01:intron 20.0%
!!! ATTTTATATGTACTAGACAA+AGG + Chr5:101599280-101599299 None:intergenic 20.0%
!!! CAAAATTTTCAAGTTTATCA+TGG - Chr5:101599164-101599183 MsG0580029758.01.T01:CDS 20.0%
!!! GTAAGTTCTGAAATATTATT+AGG - Chr5:101597834-101597853 MsG0580029758.01.T01:intron 20.0%
!!! GTGACACTTTTTAAAATTAT+AGG + Chr5:101597910-101597929 None:intergenic 20.0%
!!! TATAGTAAGAAAAAGTTTTG+AGG - Chr5:101598533-101598552 MsG0580029758.01.T01:intron 20.0%
!!! TATTTTTAAAACCTATGCTT+TGG - Chr5:101598062-101598081 MsG0580029758.01.T01:intron 20.0%
!!! TCGTATTTCATTTTGTATAT+GGG - Chr5:101597534-101597553 MsG0580029758.01.T01:intron 20.0%
!!! TTATATGATTTTCGATTTGT+TGG - Chr5:101597341-101597360 MsG0580029758.01.T01:CDS 20.0%
!!! TTTCCATTTACTTAATTTTG+AGG - Chr5:101597874-101597893 MsG0580029758.01.T01:intron 20.0%
!!! TTTTTTAGATTTCTCTCATT+AGG - Chr5:101597628-101597647 MsG0580029758.01.T01:intron 20.0%
! AAATAAGAGAGGAAAATAAG+AGG - Chr5:101599296-101599315 MsG0580029758.01.T01:CDS 25.0%
! AATGGAAGGATTGAATTTAA+TGG - Chr5:101597486-101597505 MsG0580029758.01.T01:intron 25.0%
! ATAACATCACATTATCCTAA+AGG - Chr5:101599556-101599575 MsG0580029758.01.T01:five_prime_UTR 25.0%
! ATAAGAGGAAGAAACAAAAT+TGG - Chr5:101599311-101599330 MsG0580029758.01.T01:CDS 25.0%
! ATTGGTATAATTTCCTTAGT+TGG - Chr5:101599473-101599492 MsG0580029758.01.T01:five_prime_UTR 25.0%
! CTTTACCTTAAATGTTGAAA+TGG - Chr5:101597189-101597208 MsG0580029758.01.T01:intron 25.0%
! GAACCTCAAAATTTAGTTAA+AGG - Chr5:101598232-101598251 MsG0580029758.01.T01:intron 25.0%
! GTATGTATTTCATAGGTTAT+AGG - Chr5:101597386-101597405 MsG0580029758.01.T01:CDS 25.0%
! TAAATATGGTATGCTTCAAA+GGG - Chr5:101596872-101596891 MsG0580029758.01.T01:three_prime_UTR 25.0%
! TCACTGAAATTAAATTTCGT+TGG - Chr5:101598431-101598450 MsG0580029758.01.T01:intron 25.0%
! TCTAACAAAATCATCAAACT+TGG + Chr5:101598811-101598830 None:intergenic 25.0%
! TGAGGTAGTTAAAATAGAAA+TGG - Chr5:101598551-101598570 MsG0580029758.01.T01:intron 25.0%
! TGATGGAAAATTATTATGTG+GGG - Chr5:101597705-101597724 MsG0580029758.01.T01:intron 25.0%
! TTAAATATGGTATGCTTCAA+AGG - Chr5:101596871-101596890 MsG0580029758.01.T01:three_prime_UTR 25.0%
! TTATTATGTGGGGTTTAATT+AGG - Chr5:101597715-101597734 MsG0580029758.01.T01:intron 25.0%
! TTGGTATAATTTCCTTAGTT+GGG - Chr5:101599474-101599493 MsG0580029758.01.T01:five_prime_UTR 25.0%
!! AAAAAGTAGTTTTCCCAATA+TGG + Chr5:101597151-101597170 None:intergenic 25.0%
!! ATATGTTTGATTAGAAGTGT+CGG + Chr5:101597273-101597292 None:intergenic 25.0%
!! CTCGTATTTCATTTTGTATA+TGG - Chr5:101597533-101597552 MsG0580029758.01.T01:intron 25.0%
!! GTAAGTGACATTAAATTTTC+AGG - Chr5:101598636-101598655 MsG0580029758.01.T01:CDS 25.0%
!! GTTCATTTGGAATAAACTTA+TGG - Chr5:101596920-101596939 MsG0580029758.01.T01:CDS 25.0%
!!! AACCTTAAGATTAGTTTGTT+GGG - Chr5:101597119-101597138 MsG0580029758.01.T01:intron 25.0%
!!! ATCTTAAGTGGATTCAATTT+TGG - Chr5:101598899-101598918 MsG0580029758.01.T01:intron 25.0%
!!! CATTTTGACTACATTTTAGA+GGG - Chr5:101599411-101599430 MsG0580029758.01.T01:five_prime_UTR 25.0%
!!! CTAAATTTTGAGGTTCAAAT+TGG + Chr5:101598228-101598247 None:intergenic 25.0%
!!! GTTCAGGTTGATTTTAAATA+TGG - Chr5:101596858-101596877 MsG0580029758.01.T01:three_prime_UTR 25.0%
!!! TAACATTTTTGGTTCATTTG+TGG - Chr5:101597945-101597964 MsG0580029758.01.T01:intron 25.0%
!!! TATTGGGAAAACTACTTTTT+TGG - Chr5:101597151-101597170 MsG0580029758.01.T01:intron 25.0%
!!! TCTTAAGTGGATTCAATTTT+GGG - Chr5:101598900-101598919 MsG0580029758.01.T01:intron 25.0%
!!! TTCATTGCTTTTCTTTTTGT+GGG - Chr5:101598967-101598986 MsG0580029758.01.T01:intron 25.0%
AAACTTGGTTCCTATTAGAA+TGG + Chr5:101598796-101598815 None:intergenic 30.0%
AAATTTCTTTCTATCGTCCA+AGG + Chr5:101599207-101599226 None:intergenic 30.0%
AACAACAGCATACCAATAAT+GGG - Chr5:101597072-101597091 MsG0580029758.01.T01:intron 30.0%
AACTTGGTTCCTATTAGAAT+GGG + Chr5:101598795-101598814 None:intergenic 30.0%
AATTGTCCATTGTAAATCTG+GGG + Chr5:101598838-101598857 None:intergenic 30.0%
ACAAAATACCAAAATACACG+TGG + Chr5:101599511-101599530 None:intergenic 30.0%
ACAATTGTCCATTGTAAATC+TGG + Chr5:101598840-101598859 None:intergenic 30.0%
ATCACATTATCCTAAAGGAA+AGG - Chr5:101599561-101599580 MsG0580029758.01.T01:five_prime_UTR 30.0%
ATCTGGTGTATGTATTTCAT+AGG - Chr5:101597379-101597398 MsG0580029758.01.T01:CDS 30.0%
ATGACCCATTTCAACATTTA+AGG + Chr5:101597197-101597216 None:intergenic 30.0%
CAATTGTCCATTGTAAATCT+GGG + Chr5:101598839-101598858 None:intergenic 30.0%
CCTAAAATAACACGTAGATT+AGG + Chr5:101599390-101599409 None:intergenic 30.0%
CGAATACATATAGACAATGT+CGG + Chr5:101598163-101598182 None:intergenic 30.0%
GACAAAACTTTGTATGTTCA+AGG - Chr5:101597508-101597527 MsG0580029758.01.T01:intron 30.0%
TCTGCAAATTGAATGTAACA+TGG + Chr5:101598764-101598783 None:intergenic 30.0%
TGATCAACTTACATCTTAAG+TGG - Chr5:101598887-101598906 MsG0580029758.01.T01:intron 30.0%
TGTTGCACTTGAAAAGAAAA+GGG + Chr5:101599127-101599146 None:intergenic 30.0%
! AGTTGGAACTACATTTTACT+TGG + Chr5:101598471-101598490 None:intergenic 30.0%
! ATTTCGGCTTACTTATTTCT+TGG + Chr5:101598259-101598278 None:intergenic 30.0%
! CAACTACTAGTTTATAGTGA+AGG - Chr5:101598110-101598129 MsG0580029758.01.T01:intron 30.0%
! CTTTTGTTGGTCAGTTTTTT+AGG - Chr5:101596898-101596917 MsG0580029758.01.T01:exon 30.0%
! GGTCCTTTAACTAAATTTTG+AGG + Chr5:101598238-101598257 None:intergenic 30.0%
!! AAACTTATGGTTTGTTCTGT+TGG - Chr5:101596933-101596952 MsG0580029758.01.T01:CDS 30.0%
!! AATGAAAAGCATTTGGAAGT+TGG + Chr5:101598488-101598507 None:intergenic 30.0%
!! CCTCTAAAATGTAGTCAAAA+TGG + Chr5:101599413-101599432 None:intergenic 30.0%
!! CTTAAGTGGATTCAATTTTG+GGG - Chr5:101598901-101598920 MsG0580029758.01.T01:intron 30.0%
!! GAACCTTAAGATTAGTTTGT+TGG - Chr5:101597118-101597137 MsG0580029758.01.T01:intron 30.0%
!! GTGTGAAAATGAAAAGCATT+TGG + Chr5:101598495-101598514 None:intergenic 30.0%
!! GTTCATTGCTTTTCTTTTTG+TGG - Chr5:101598966-101598985 MsG0580029758.01.T01:intron 30.0%
!! TCTTTCTTGTTGTTGATGAT+GGG + Chr5:101596644-101596663 None:intergenic 30.0%
!! TTCTTTCTTGTTGTTGATGA+TGG + Chr5:101596645-101596664 None:intergenic 30.0%
!!! AATTTTGAGGTTCAAATTGG+TGG + Chr5:101598225-101598244 None:intergenic 30.0%
!!! CATTTTAGTGTTGACTATGT+TGG - Chr5:101597228-101597247 MsG0580029758.01.T01:intron 30.0%
!!! CCATTTTGACTACATTTTAG+AGG - Chr5:101599410-101599429 MsG0580029758.01.T01:five_prime_UTR 30.0%
!!! CCTAATCTACGTGTTATTTT+AGG - Chr5:101599387-101599406 MsG0580029758.01.T01:five_prime_UTR 30.0%
!!! GTCAGTTTTTTAGGTTCATT+TGG - Chr5:101596907-101596926 MsG0580029758.01.T01:exon 30.0%
!!! TCTTTTCATATTGACTTGCT+AGG - Chr5:101599358-101599377 MsG0580029758.01.T01:exon 30.0%
!!! TTTTTTCAGATCAAGTACGT+AGG - Chr5:101597436-101597455 MsG0580029758.01.T01:intron 30.0%
AAGAAGAACAAGAAGAAGAG+AGG - Chr5:101596710-101596729 MsG0580029758.01.T01:three_prime_UTR 35.0%
ACAATGGACAATTGTAACAC+AGG - Chr5:101598845-101598864 MsG0580029758.01.T01:intron 35.0%
ACTAATATATGGGACCAATC+TGG - Chr5:101598193-101598212 MsG0580029758.01.T01:intron 35.0%
ACTGCAATTCCCATTCTAAT+AGG - Chr5:101598783-101598802 MsG0580029758.01.T01:intron 35.0%
ACTTTAACCAACATGCATGT+AGG + Chr5:101598927-101598946 None:intergenic 35.0%
AGAAAAGAGGAGTTTGCAAA+TGG - Chr5:101597468-101597487 MsG0580029758.01.T01:intron 35.0%
ATAATTTCCTTAGTTGGGTG+AGG - Chr5:101599479-101599498 MsG0580029758.01.T01:five_prime_UTR 35.0%
ATCTGACTCATACCCATTAT+TGG + Chr5:101597087-101597106 None:intergenic 35.0%
ATTGTCCATTGTAAATCTGG+GGG + Chr5:101598837-101598856 None:intergenic 35.0%
CACCCAACAAACTAATCTTA+AGG + Chr5:101597124-101597143 None:intergenic 35.0%
CTAAAGGAAAGGAAGAGAAA+AGG - Chr5:101599572-101599591 MsG0580029758.01.T01:five_prime_UTR 35.0%
CTAATATATGGGACCAATCT+GGG - Chr5:101598194-101598213 MsG0580029758.01.T01:intron 35.0%
GAACAACAGCATACCAATAA+TGG - Chr5:101597071-101597090 MsG0580029758.01.T01:intron 35.0%
GACTTGTACCTTTCATATAC+AGG - Chr5:101599071-101599090 MsG0580029758.01.T01:CDS 35.0%
GGTCTTTGAATGTTTGAATC+TGG - Chr5:101597362-101597381 MsG0580029758.01.T01:CDS 35.0%
GTATGAGTCAGATTCTGATT+TGG - Chr5:101597094-101597113 MsG0580029758.01.T01:intron 35.0%
GTGTTGCACTTGAAAAGAAA+AGG + Chr5:101599128-101599147 None:intergenic 35.0%
TACCTTTCATATACAGGCAA+GGG - Chr5:101599077-101599096 MsG0580029758.01.T01:CDS 35.0%
TAGGAAATGAGGTAGAAAAG+AGG - Chr5:101597455-101597474 MsG0580029758.01.T01:intron 35.0%
TCTATTTCACACAGAAACAG+AGG + Chr5:101596589-101596608 None:intergenic 35.0%
TGAAACTGTAGTAGCCTTTA+TGG - Chr5:101598603-101598622 MsG0580029758.01.T01:intron 35.0%
TGAACAAAGCCATATCTCAA+TGG - Chr5:101596782-101596801 MsG0580029758.01.T01:three_prime_UTR 35.0%
TTACCACTTATCAGCCATAA+AGG + Chr5:101598620-101598639 None:intergenic 35.0%
! CTTTTCTCTTCCTTTCCTTT+AGG + Chr5:101599574-101599593 None:intergenic 35.0%
! TGGAACTACATTTTACTTGG+TGG + Chr5:101598468-101598487 None:intergenic 35.0%
! TTTTGTATATGGGATGTTGC+AGG - Chr5:101597544-101597563 MsG0580029758.01.T01:intron 35.0%
!! CTTTCTTGTTGTTGATGATG+GGG + Chr5:101596643-101596662 None:intergenic 35.0%
!! TCACTTTTGCCATTGAGATA+TGG + Chr5:101596794-101596813 None:intergenic 35.0%
!! TTCATATTGACTTGCTAGGA+AGG - Chr5:101599362-101599381 MsG0580029758.01.T01:exon 35.0%
!!! CTTCAAAGGGTATCTTTTGT+TGG - Chr5:101596885-101596904 MsG0580029758.01.T01:three_prime_UTR 35.0%
AACATGGAGTTGACATGGTA+AGG - Chr5:101597972-101597991 MsG0580029758.01.T01:intron 40.0%
AACCTTCTTCTCCAAAGCAT+AGG + Chr5:101598076-101598095 None:intergenic 40.0%
AACTGCATCTTTACAAGCCA+TGG + Chr5:101597767-101597786 None:intergenic 40.0%
AAGAGGAGTTTGCAAATGGA+AGG - Chr5:101597472-101597491 MsG0580029758.01.T01:intron 40.0%
ACTCTGCAGGAAAATTGTTC+AGG - Chr5:101596842-101596861 MsG0580029758.01.T01:three_prime_UTR 40.0%
ACTGCATCTTTACAAGCCAT+GGG + Chr5:101597766-101597785 None:intergenic 40.0%
AGCCATGGGAATTTGATCTA+AGG + Chr5:101597752-101597771 None:intergenic 40.0%
GATCAAGTACGTAGGAAATG+AGG - Chr5:101597444-101597463 MsG0580029758.01.T01:intron 40.0%
GTACCTTTCATATACAGGCA+AGG - Chr5:101599076-101599095 MsG0580029758.01.T01:CDS 40.0%
GTCCTTAGATCAAATTCCCA+TGG - Chr5:101597747-101597766 MsG0580029758.01.T01:intron 40.0%
TACCAAAATACACGTGGCTT+TGG + Chr5:101599505-101599524 None:intergenic 40.0%
TAGCCTTTATGGCTGATAAG+TGG - Chr5:101598614-101598633 MsG0580029758.01.T01:CDS 40.0%
TGAAGCAAGAAAGTGGAATC+AGG - Chr5:101598387-101598406 MsG0580029758.01.T01:CDS 40.0%
TGATGAGAACATGAATGGTG+TGG - Chr5:101599434-101599453 MsG0580029758.01.T01:five_prime_UTR 40.0%
TGTTGGGTGATTGCCATATT+GGG - Chr5:101597135-101597154 MsG0580029758.01.T01:intron 40.0%
TTGTTGGGTGATTGCCATAT+TGG - Chr5:101597134-101597153 MsG0580029758.01.T01:intron 40.0%
!! AACCTATGCTTTGGAGAAGA+AGG - Chr5:101598071-101598090 MsG0580029758.01.T01:intron 40.0%
!! ATTCAAAGGCGTCTCAATGT+CGG + Chr5:101597322-101597341 None:intergenic 40.0%
!! CAAAGCTCTTTAACTTGCCT+TGG - Chr5:101599187-101599206 MsG0580029758.01.T01:CDS 40.0%
!! CTGTGTTTTTGCAGTGTTGT+TGG - Chr5:101598355-101598374 MsG0580029758.01.T01:CDS 40.0%
!! GTTCATTTGTGGCTCTAACA+TGG - Chr5:101597956-101597975 MsG0580029758.01.T01:intron 40.0%
!! GTTTTTGCAGTGTTGTTGGA+TGG - Chr5:101598359-101598378 MsG0580029758.01.T01:CDS 40.0%
!!! GAATGGTGTGGCTCATTTTT+TGG - Chr5:101599446-101599465 MsG0580029758.01.T01:five_prime_UTR 40.0%
!!! GGCTCATTTTTTGGTGTCAT+TGG - Chr5:101599455-101599474 MsG0580029758.01.T01:five_prime_UTR 40.0%
AAACCATCATCAACCGTAGC+CGG + Chr5:101597044-101597063 None:intergenic 45.0%
AGAAGATGACACAACTCTGC+AGG - Chr5:101596829-101596848 MsG0580029758.01.T01:three_prime_UTR 45.0%
AGCCCTTGCCTGTATATGAA+AGG + Chr5:101599082-101599101 None:intergenic 45.0%
ATATATGGGACCAATCTGGG+TGG - Chr5:101598197-101598216 MsG0580029758.01.T01:intron 45.0%
GACTTCCCCCAGATTTACAA+TGG - Chr5:101598829-101598848 MsG0580029758.01.T01:intron 45.0%
GAGGGTGATGAGAACATGAA+TGG - Chr5:101599429-101599448 MsG0580029758.01.T01:five_prime_UTR 45.0%
GCAGAGTTGTGTCATCTTCT+TGG + Chr5:101596829-101596848 None:intergenic 45.0%
GCTCTAACATGGAGTTGACA+TGG - Chr5:101597967-101597986 MsG0580029758.01.T01:intron 45.0%
GGTACAGTGAAGCAAGAAAG+TGG - Chr5:101598380-101598399 MsG0580029758.01.T01:CDS 45.0%
!!! ATGATGGGGCGTTTGGTTTT+TGG + Chr5:101596629-101596648 None:intergenic 45.0%
!!! TGATGGGGCGTTTGGTTTTT+GGG + Chr5:101596628-101596647 None:intergenic 45.0%
ACAGGCAAGGGCTTATGCAA+GGG - Chr5:101599089-101599108 MsG0580029758.01.T01:CDS 50.0%
GGCTTATGCAAGGGCAATGA+AGG - Chr5:101599098-101599117 MsG0580029758.01.T01:CDS 50.0%
TACAGGCAAGGGCTTATGCA+AGG - Chr5:101599088-101599107 MsG0580029758.01.T01:CDS 50.0%
! GGCCAAAGCCACGTGTATTT+TGG - Chr5:101599500-101599519 MsG0580029758.01.T01:five_prime_UTR 50.0%
! TTTGGGGCCTACATGCATGT+TGG - Chr5:101598917-101598936 MsG0580029758.01.T01:intron 50.0%
!! GTTGTTGATGATGGGGCGTT+TGG + Chr5:101596636-101596655 None:intergenic 50.0%
GCTTTGGCCTCACCCAACTA+AGG + Chr5:101599489-101599508 None:intergenic 55.0%
TCATCAACCGTAGCCGGAGA+CGG + Chr5:101597038-101597057 None:intergenic 55.0%
! ATTGGTGGCTCCACCCAGAT+TGG + Chr5:101598210-101598229 None:intergenic 55.0%
!! TCTCCGGCTACGGTTGATGA+TGG - Chr5:101597038-101597057 MsG0580029758.01.T01:CDS 55.0%
TCAACCGTAGCCGGAGACGG+CGG + Chr5:101597035-101597054 None:intergenic 65.0%
GCCGGAGACGGCGGCGACAA+CGG + Chr5:101597026-101597045 None:intergenic 75.0%
GCCGTTGTCGCCGCCGTCTC+CGG - Chr5:101597022-101597041 MsG0580029758.01.T01:CDS 75.0%
GTCGCCGCCGTCTCCGGCTA+CGG - Chr5:101597028-101597047 MsG0580029758.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 101596573 101599600 101596573 ID=MsG0580029758.01;Name=MsG0580029758.01
Chr5 mRNA 101596573 101599600 101596573 ID=MsG0580029758.01.T01;Parent=MsG0580029758.01;Name=MsG0580029758.01.T01;_AED=0.28;_eAED=0.29;_QI=228|0.75|0.8|1|1|1|5|343|296
Chr5 exon 101596573 101597080 101596573 ID=MsG0580029758.01.T01:exon:26378;Parent=MsG0580029758.01.T01
Chr5 exon 101597307 101597442 101597307 ID=MsG0580029758.01.T01:exon:26377;Parent=MsG0580029758.01.T01
Chr5 exon 101598340 101598436 101598340 ID=MsG0580029758.01.T01:exon:26376;Parent=MsG0580029758.01.T01
Chr5 exon 101598608 101598728 101598608 ID=MsG0580029758.01.T01:exon:26375;Parent=MsG0580029758.01.T01
Chr5 exon 101599001 101599600 101599001 ID=MsG0580029758.01.T01:exon:26374;Parent=MsG0580029758.01.T01
Chr5 five_prime_UTR 101599373 101599600 101599373 ID=MsG0580029758.01.T01:five_prime_utr;Parent=MsG0580029758.01.T01
Chr5 CDS 101599001 101599372 101599001 ID=MsG0580029758.01.T01:cds;Parent=MsG0580029758.01.T01
Chr5 CDS 101598608 101598728 101598608 ID=MsG0580029758.01.T01:cds;Parent=MsG0580029758.01.T01
Chr5 CDS 101598340 101598436 101598340 ID=MsG0580029758.01.T01:cds;Parent=MsG0580029758.01.T01
Chr5 CDS 101597307 101597442 101597307 ID=MsG0580029758.01.T01:cds;Parent=MsG0580029758.01.T01
Chr5 CDS 101596916 101597080 101596916 ID=MsG0580029758.01.T01:cds;Parent=MsG0580029758.01.T01
Chr5 three_prime_UTR 101596573 101596915 101596573 ID=MsG0580029758.01.T01:three_prime_utr;Parent=MsG0580029758.01.T01
Gene Sequence

>MsG0580029758.01.T01

ATGGCAAAAGTGATAAAAGAAACAACCAAGAAGATGACACAACTCTGCAGGAAAATTGTTCAGGTTGATTTTAAATATGGTATGCTTCAAAGGGTATCTTTTGTTGGTCAGTTTTTTAGGTTCATTTGGAATAAACTTATGGTTTGTTCTGTTGGAAGATCACAAGCTCAATATAGAAGATTATCTCTTAATCATTCTTCTGCTTCTGCTTCTTCTTCTTCGCCGTTGTCGCCGCCGTCTCCGGCTACGGTTGATGATGGTTTCACACGAGAACAACAGCATACCAATAATGGGTATGAGTCAGATTCTGATTTGGTGAACCTTAAGATTAGTTTGTTGGGTGATTGCCATATTGGGAAAACTACTTTTTTGATCAAGTACGTAGGAAATGAGGTAGAAAAGAGGAGTTTGCAAATGGAAGGATTGAATTTAATGGACAAAACTTTGTATGTTCAAGGAGCTCGTATTTCATTTTGTATATGGGATGTTGCAGGTGACAAAAAGTCCTTAGATCAAATTCCCATGGCTTGTAAAGATGCAGTTGCTCTACTGATTATGTTTGATCTCACTAGTCGTTCTACACTAAACAAATGTATTATGTTTTATGGAATTTGTGATGACCATGTTACATTCAATTTGCAGACTGCAATTCCCATTCTAATAGGAACCAAGTTTGATGATTTTGTTAGACTTCCCCCAGATTTACAATGGACAATTGTAACACAGGCAAGGGCTTATGCAAGGGCAATGAAGGCAACCCTTTTCTTTTCAAGTGCAACACATAATATAAATGTCAACAAAATTTTCAAGTTTATCATGGCAAAGCTCTTTAACTTGCCTTGGACGATAGAAAGAAATTTGAAAGTTGGAGAACCCATAATTGACTTCTAA

Protein sequence

>MsG0580029758.01.T01

MAKVIKETTKKMTQLCRKIVQVDFKYGMLQRVSFVGQFFRFIWNKLMVCSVGRSQAQYRRLSLNHSSASASSSSPLSPPSPATVDDGFTREQQHTNNGYESDSDLVNLKISLLGDCHIGKTTFLIKYVGNEVEKRSLQMEGLNLMDKTLYVQGARISFCIWDVAGDKKSLDQIPMACKDAVALLIMFDLTSRSTLNKCIMFYGICDDHVTFNLQTAIPILIGTKFDDFVRLPPDLQWTIVTQARAYARAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTIERNLKVGEPIIDF*