AlfalfaGEDB | MsG0180001807.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001807.01

KEGG: -
GO: -
PFAM: PF04535

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001807.01.T01	XP_003590058.1	99.342	152	1	0	1	152	1	152	8.00E-103	301
MsG0180001807.01.T03	XP_024637098.1	99.265	136	1	0	1	136	1	136	1.09E-90	269
MsG0180001807.01.T02	XP_003590058.1	92.105	152	1	1	1	141	1	152	3.11E-91	271
MsG0180001807.01.T05	XP_003590058.1	99.029	103	1	0	1	103	50	152	3.47E-65	203
MsG0180001807.01.T06	XP_024637098.1	100	41	0	0	1	41	96	136	1.91E-20	87.4
MsG0180001807.01.T04	XP_024637098.1	97.059	136	0	1	1	132	1	136	1.90E-85	255

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001807.01.T01	Q8L7R5	62.914	151	56	0	1	151	1	151	5.55E-66	200
MsG0180001807.01.T02	Q8L7R5	56.291	151	55	1	1	140	1	151	8.16E-55	172
MsG0180001807.01.T03	Q8L7R5	54.305	151	53	1	1	135	1	151	2.00E-51	163
MsG0180001807.01.T04	Q8L7R5	52.318	151	52	1	1	131	1	151	1.57E-47	153
MsG0180001807.01.T05	Q8L7R5	67.647	102	33	0	1	102	50	151	1.28E-45	147

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001807.01.T01	G7I5E9	99.342	152	1	0	1	152	1	152	3.82e-103	301
MsG0180001807.01.T02	G7I5E9	92.105	152	1	1	1	141	1	152	1.49e-91	271
MsG0180001807.01.T03	G7I5E9	88.816	152	1	1	1	136	1	152	1.32e-86	258
MsG0180001807.01.T04	G7I5E9	86.842	152	0	1	1	132	1	152	4.99e-83	249
MsG0180001807.01.T05	G7I5E9	99.029	103	1	0	1	103	50	152	1.66e-65	203
MsG0180001807.01.T06	G7I5E9	100.000	41	0	0	1	41	112	152	1.42e-20	87.0

TFs/TRs:

Gene ID	Type	Classification
MsG0180001807.01.T05	TF	C3H

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type
MsG0580024876.01	MsG0180001807.01	PPI
MsG0180001807.01	MsG0580024876.01	PPI
MsG0180001807.01	MsG0580024876.01	PPI
MsG0180001807.01	MsG0580024876.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001807.01.T01	MTR_1g043450	99.342	152	1	0	1	152	1	152	9.69e-107	301
MsG0180001807.01.T01	MTR_1g073950	70.395	152	45	0	1	152	1	152	1.28e-77	227
MsG0180001807.01.T01	MTR_1g074040	71.560	109	31	0	44	152	43	151	9.44e-56	172
MsG0180001807.01.T01	MTR_4g021340	51.634	153	72	1	1	151	2	154	1.11e-49	157
MsG0180001807.01.T01	MTR_4g058950	42.384	151	86	1	1	151	35	184	2.57e-38	129
MsG0180001807.01.T01	MTR_4g068780	37.086	151	95	0	1	151	15	165	1.46e-21	85.5
MsG0180001807.01.T01	MTR_8g078830	35.570	149	94	2	1	148	1	148	1.39e-19	80.1
MsG0180001807.01.T01	MTR_5g018680	35.526	152	96	2	1	151	1	151	7.45e-18	75.5
MsG0180001807.01.T01	MTR_4g113590	64.706	51	18	0	45	95	4	54	2.03e-17	72.0
MsG0180001807.01.T03	MTR_1g043450	88.816	152	1	1	1	136	1	152	3.34e-90	258
MsG0180001807.01.T03	MTR_1g073950	63.816	152	39	1	1	136	1	152	5.17e-65	194
MsG0180001807.01.T03	MTR_1g074040	61.468	109	26	1	44	136	43	151	5.33e-42	136
MsG0180001807.01.T03	MTR_4g021340	43.791	153	68	2	1	135	2	154	2.21e-35	120
MsG0180001807.01.T03	MTR_4g058950	37.748	151	77	2	1	135	35	184	2.10e-30	108
MsG0180001807.01.T03	MTR_8g078830	34.228	149	80	4	1	132	1	148	1.24e-15	69.3
MsG0180001807.01.T03	MTR_5g018680	30.464	151	89	3	1	135	1	151	1.20e-14	66.6
MsG0180001807.01.T03	MTR_4g068780	33.113	151	85	1	1	135	15	165	8.30e-13	62.4
MsG0180001807.01.T02	MTR_1g043450	92.105	152	1	1	1	141	1	152	3.77e-95	271
MsG0180001807.01.T02	MTR_1g073950	66.447	152	40	1	1	141	1	152	1.19e-68	204
MsG0180001807.01.T02	MTR_1g074040	65.138	109	27	1	44	141	43	151	4.51e-46	147
MsG0180001807.01.T02	MTR_4g021340	45.752	153	70	2	1	140	2	154	1.45e-38	128
MsG0180001807.01.T02	MTR_4g058950	39.073	151	80	2	1	140	35	184	9.24e-32	112
MsG0180001807.01.T02	MTR_8g078830	33.557	149	86	3	1	137	1	148	7.38e-16	70.1
MsG0180001807.01.T02	MTR_5g018680	31.788	151	92	3	1	140	1	151	4.47e-15	68.2
MsG0180001807.01.T02	MTR_4g068780	33.775	151	89	1	1	140	15	165	2.43e-14	66.2
MsG0180001807.01.T02	MTR_4g113590	73.529	34	9	0	45	78	4	37	6.72e-11	54.7
MsG0180001807.01.T05	MTR_1g043450	99.029	103	1	0	1	103	50	152	4.20e-69	203
MsG0180001807.01.T05	MTR_1g074040	72.816	103	28	0	1	103	49	151	8.06e-53	162
MsG0180001807.01.T05	MTR_1g073950	70.874	103	30	0	1	103	50	152	4.83e-51	158
MsG0180001807.01.T05	MTR_4g021340	54.808	104	45	1	1	102	51	154	7.88e-34	114
MsG0180001807.01.T05	MTR_4g058950	39.604	101	60	1	2	102	85	184	5.61e-20	80.1
MsG0180001807.01.T05	MTR_4g113590	65.217	46	16	0	1	46	9	54	1.55e-15	65.5
MsG0180001807.01.T06	MTR_1g043450	100.000	41	0	0	1	41	112	152	3.59e-24	87.0
MsG0180001807.01.T06	MTR_1g074040	73.171	41	11	0	1	41	111	151	2.59e-17	69.7
MsG0180001807.01.T06	MTR_1g073950	73.171	41	11	0	1	41	112	152	1.30e-16	67.8
MsG0180001807.01.T04	MTR_1g043450	86.842	152	0	1	1	132	1	152	1.27e-86	249
MsG0180001807.01.T04	MTR_1g073950	62.500	152	37	1	1	132	1	152	2.01e-61	185
MsG0180001807.01.T04	MTR_1g074040	58.716	109	25	1	44	132	43	151	1.77e-38	127
MsG0180001807.01.T04	MTR_4g021340	43.137	153	65	2	1	131	2	154	6.74e-33	113
MsG0180001807.01.T04	MTR_4g058950	37.748	151	73	2	1	131	35	184	9.74e-29	103
MsG0180001807.01.T04	MTR_8g078830	31.544	149	80	3	1	128	1	148	1.90e-14	66.2
MsG0180001807.01.T04	MTR_5g018680	28.477	151	88	2	1	131	1	151	1.19e-12	61.2
MsG0180001807.01.T04	MTR_4g068780	32.450	151	82	1	1	131	15	165	8.23e-12	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001807.01.T01	AT3G23200	62.914	151	56	0	1	151	1	151	5.66e-67	200
MsG0180001807.01.T01	AT3G53850	50.980	153	73	1	1	151	1	153	1.90e-50	159
MsG0180001807.01.T01	AT3G53850	50.980	153	73	1	1	151	1	153	1.90e-50	159
MsG0180001807.01.T01	AT3G23200	67.290	107	35	0	45	151	18	124	4.56e-48	152
MsG0180001807.01.T01	AT5G02060	49.669	151	74	1	1	149	1	151	1.98e-41	135
MsG0180001807.01.T01	AT3G53850	54.054	111	49	1	43	151	30	140	1.36e-36	123
MsG0180001807.01.T01	AT2G28370	43.709	151	84	1	1	151	29	178	1.59e-33	116
MsG0180001807.01.T01	AT2G37200	43.333	150	83	2	1	150	31	178	2.28e-32	113
MsG0180001807.01.T01	AT2G37200	43.333	150	83	2	1	150	60	207	5.46e-32	113
MsG0180001807.01.T01	AT4G37235	34.375	128	77	3	9	134	9	131	7.50e-19	78.2
MsG0180001807.01.T01	AT3G50810	33.333	147	98	0	1	147	1	147	1.10e-17	75.1
MsG0180001807.01.T01	AT3G50810	33.333	147	98	0	1	147	1	147	1.10e-17	75.1
MsG0180001807.01.T01	AT3G50810	33.333	147	98	0	1	147	1	147	1.10e-17	75.1
MsG0180001807.01.T01	AT1G49405	30.303	132	91	1	1	132	1	131	7.07e-13	62.8
MsG0180001807.01.T03	AT3G23200	54.305	151	53	1	1	135	1	151	2.04e-52	163
MsG0180001807.01.T03	AT3G53850	43.137	153	69	2	1	135	1	153	4.69e-36	121
MsG0180001807.01.T03	AT3G53850	43.137	153	69	2	1	135	1	153	4.69e-36	121
MsG0180001807.01.T03	AT3G23200	55.140	107	32	1	45	135	18	124	1.39e-33	114
MsG0180001807.01.T03	AT5G02060	43.046	151	68	2	1	133	1	151	7.87e-29	103
MsG0180001807.01.T03	AT2G37200	40.000	150	72	3	1	134	31	178	5.51e-25	94.4
MsG0180001807.01.T03	AT2G37200	40.000	150	72	3	1	134	60	207	1.43e-24	94.0
MsG0180001807.01.T03	AT2G28370	38.411	151	76	2	1	135	29	178	2.77e-24	92.4
MsG0180001807.01.T03	AT3G53850	43.243	111	45	2	43	135	30	140	2.04e-22	86.7
MsG0180001807.01.T03	AT3G50810	31.293	147	85	1	1	131	1	147	1.22e-12	61.6
MsG0180001807.01.T03	AT3G50810	31.293	147	85	1	1	131	1	147	1.22e-12	61.6
MsG0180001807.01.T03	AT3G50810	31.293	147	85	1	1	131	1	147	1.22e-12	61.6
MsG0180001807.01.T03	AT4G37235	30.469	128	66	4	9	118	9	131	2.32e-11	58.2
MsG0180001807.01.T02	AT3G23200	56.291	151	55	1	1	140	1	151	8.32e-56	172
MsG0180001807.01.T02	AT3G53850	45.098	153	71	2	1	140	1	153	3.27e-39	130
MsG0180001807.01.T02	AT3G53850	45.098	153	71	2	1	140	1	153	3.27e-39	130
MsG0180001807.01.T02	AT3G23200	57.944	107	34	1	45	140	18	124	4.64e-37	123
MsG0180001807.01.T02	AT5G02060	44.371	151	71	2	1	138	1	151	4.59e-31	108
MsG0180001807.01.T02	AT2G37200	41.333	150	75	3	1	139	31	178	3.30e-26	97.4
MsG0180001807.01.T02	AT2G37200	41.333	150	75	3	1	139	60	207	6.73e-26	97.4
MsG0180001807.01.T02	AT2G28370	39.735	151	79	2	1	140	29	178	1.01e-25	96.3
MsG0180001807.01.T02	AT3G53850	45.946	111	47	2	43	140	30	140	1.65e-25	94.7
MsG0180001807.01.T02	AT3G50810	32.653	147	88	2	1	136	1	147	3.47e-13	63.2
MsG0180001807.01.T02	AT3G50810	32.653	147	88	2	1	136	1	147	3.47e-13	63.2
MsG0180001807.01.T02	AT3G50810	32.653	147	88	2	1	136	1	147	3.47e-13	63.2
MsG0180001807.01.T02	AT4G37235	31.298	131	66	5	9	123	9	131	2.01e-12	61.2
MsG0180001807.01.T05	AT3G23200	67.647	102	33	0	1	102	23	124	1.07e-46	146
MsG0180001807.01.T05	AT3G23200	67.647	102	33	0	1	102	50	151	1.30e-46	147
MsG0180001807.01.T05	AT3G53850	52.885	104	47	1	1	102	50	153	1.02e-33	114
MsG0180001807.01.T05	AT3G53850	52.885	104	47	1	1	102	50	153	1.02e-33	114
MsG0180001807.01.T05	AT3G53850	52.885	104	47	1	1	102	37	140	1.11e-33	114
MsG0180001807.01.T05	AT5G02060	50.000	102	49	1	1	100	50	151	3.18e-25	92.8
MsG0180001807.01.T05	AT2G28370	44.000	100	55	1	3	102	80	178	1.39e-21	84.0
MsG0180001807.01.T05	AT2G37200	41.573	89	50	2	13	101	92	178	3.24e-19	78.2
MsG0180001807.01.T05	AT2G37200	41.573	89	50	2	13	101	121	207	6.18e-19	77.8
MsG0180001807.01.T05	AT4G37235	36.471	85	49	2	1	85	52	131	9.19e-11	55.5
MsG0180001807.01.T06	AT3G23200	56.098	41	18	0	1	41	85	125	2.47e-11	53.9
MsG0180001807.01.T06	AT3G23200	57.500	40	17	0	1	40	112	151	4.97e-11	53.5
MsG0180001807.01.T04	AT3G23200	52.318	151	52	1	1	131	1	151	1.60e-48	153
MsG0180001807.01.T04	AT3G53850	41.830	153	67	2	1	131	1	153	2.89e-34	117
MsG0180001807.01.T04	AT3G53850	41.830	153	67	2	1	131	1	153	2.89e-34	117
MsG0180001807.01.T04	AT3G23200	52.336	107	31	1	45	131	18	124	7.59e-30	104
MsG0180001807.01.T04	AT5G02060	42.384	151	65	2	1	129	1	151	4.50e-27	98.6
MsG0180001807.01.T04	AT2G37200	40.000	150	68	3	1	130	31	178	2.06e-23	90.1
MsG0180001807.01.T04	AT2G37200	40.000	150	68	3	1	130	60	207	4.39e-23	89.7
MsG0180001807.01.T04	AT2G28370	37.748	151	73	2	1	131	29	178	2.31e-22	87.4
MsG0180001807.01.T04	AT3G53850	41.441	111	43	2	43	131	30	140	1.39e-20	81.6
MsG0180001807.01.T04	AT3G50810	30.612	147	82	1	1	127	1	147	1.78e-11	58.5
MsG0180001807.01.T04	AT3G50810	30.612	147	82	1	1	127	1	147	1.78e-11	58.5
MsG0180001807.01.T04	AT3G50810	30.612	147	82	1	1	127	1	147	1.78e-11	58.5

Find 17 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTATTAACCAAAGCATTATT+AGG	0.170267	1:+27406433	None:intergenic
GATATGGGACATTGCCATTT+TGG	0.170837	1:-27406528	MsG0180001807.01.T04:CDS
GCCTCTTTGTTGTTGGAGAT+TGG	0.266255	1:-27407032	MsG0180001807.01.T04:intron
CCTCTTTGTTGTTGGAGATT+GGG	0.313786	1:-27407031	MsG0180001807.01.T04:intron
TTTGACACTCCTCTCCAAAA+TGG	0.331427	1:+27406514	None:intergenic
CAATGGCTTTACAGATCATT+TGG	0.334026	1:-27407128	MsG0180001807.01.T04:CDS
CAGTTTCTTGATAGCTTCAA+TGG	0.369991	1:-27407145	MsG0180001807.01.T04:CDS
TATTAACCAAAGCATTATTA+GGG	0.389148	1:+27406434	None:intergenic
TTGATTAGCCTCTTTGTTGT+TGG	0.400100	1:-27407039	MsG0180001807.01.T04:intron
TATCATCCCTAATAATGCTT+TGG	0.418492	1:-27406440	MsG0180001807.01.T04:CDS
AGGCAAAAGCAACAGAAATC+TGG	0.443728	1:+27406487	None:intergenic
ACAAAGAGGCTAATCAATAC+AGG	0.449483	1:+27407045	None:intergenic
ATGCTTTGGTTAATAGCAGC+AGG	0.466883	1:-27406426	MsG0180001807.01.T04:CDS
TTTGTTGGATGCATATGCTT+TGG	0.477495	1:-27407091	MsG0180001807.01.T04:intron
CCCAATCTCCAACAACAAAG+AGG	0.575927	1:+27407031	None:intergenic
CAAAGAGGCTAATCAATACA+GGG	0.608265	1:+27407046	None:intergenic
AATTGAGATCCAGCTCATGA+AGG	0.614269	1:+27406467	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTATATTTATAAACTCTTAT+CGG	+	Chr1:27406864-27406883	None:intergenic	10.0%
!!	ATCAATATTAAAATCAGAAT+GGG	-	Chr1:27407896-27407915	MsG0180001807.01.T04:intron	15.0%
!!	TATATTTATAAACTCTTATC+GGG	+	Chr1:27406863-27406882	None:intergenic	15.0%
!!!	ATAATTCAGTCATTTATTTT+AGG	-	Chr1:27406617-27406636	MsG0180001807.01.T04:intron	15.0%
!!	AAAATCACACAATGTTATAT+TGG	+	Chr1:27407047-27407066	None:intergenic	20.0%
!!	AAATCACACAATGTTATATT+GGG	+	Chr1:27407046-27407065	None:intergenic	20.0%
!!	ATGATATAGCATCATAAATT+TGG	+	Chr1:27407214-27407233	None:intergenic	20.0%
!!	CTTTAAATCAAGATAAAGAA+GGG	-	Chr1:27407855-27407874	MsG0180001807.01.T04:intron	20.0%
!!	GATCAATATTAAAATCAGAA+TGG	-	Chr1:27407895-27407914	MsG0180001807.01.T04:intron	20.0%
!!	TAAAGTAATTAAAATCAGAC+CGG	+	Chr1:27407782-27407801	None:intergenic	20.0%
!!!	AACAAGAAAATTGTTATTCT+AGG	+	Chr1:27407934-27407953	None:intergenic	20.0%
!!!	ACAAGAAAATTGTTATTCTA+GGG	+	Chr1:27407933-27407952	None:intergenic	20.0%
!!!	TATTAACCAAAGCATTATTA+GGG	+	Chr1:27408828-27408847	None:intergenic	20.0%
!	AAACAGTTTCACAAATTCTA+AGG	+	Chr1:27408380-27408399	None:intergenic	25.0%
!	AAATGAATCATTAATCACCT+TGG	-	Chr1:27407611-27407630	MsG0180001807.01.T04:intron	25.0%
!	AAGGTGATTAATGATTCATT+TGG	+	Chr1:27407612-27407631	None:intergenic	25.0%
!	CCCAATATAAAATCTTACAT+GGG	-	Chr1:27406909-27406928	MsG0180001807.01.T04:intron	25.0%
!	CTAACTCATCATTACAAAAT+CGG	+	Chr1:27406888-27406907	None:intergenic	25.0%
!	GAGATCGTTTAATATTGAAT+TGG	-	Chr1:27406708-27406727	MsG0180001807.01.T04:intron	25.0%
!	GTGTCTTAATTCACATTAAT+TGG	-	Chr1:27407096-27407115	MsG0180001807.01.T04:CDS	25.0%
!	TAACTCATCATTACAAAATC+GGG	+	Chr1:27406887-27406906	None:intergenic	25.0%
!	TATAGCATCATAAATTTGGT+AGG	+	Chr1:27407210-27407229	None:intergenic	25.0%
!	TATCAGTGATTATTCTGTTT+AGG	+	Chr1:27407821-27407840	None:intergenic	25.0%
!	TTAATTCACATTAATTGGTG+TGG	-	Chr1:27407101-27407120	MsG0180001807.01.T04:CDS	25.0%
!!	CCCATGTAAGATTTTATATT+GGG	+	Chr1:27406912-27406931	None:intergenic	25.0%
!!	CTATTAACCAAAGCATTATT+AGG	+	Chr1:27408829-27408848	None:intergenic	25.0%
!!	GCTTTAAATCAAGATAAAGA+AGG	-	Chr1:27407854-27407873	MsG0180001807.01.T04:intron	25.0%
!!	TAGAATTTGTGAAACTGTTT+TGG	-	Chr1:27408380-27408399	MsG0180001807.01.T04:intron	25.0%
!!	TCCCATGTAAGATTTTATAT+TGG	+	Chr1:27406913-27406932	None:intergenic	25.0%
!!	TCTTTTATTACACGTCATTT+TGG	-	Chr1:27406531-27406550	MsG0180001807.01.T04:CDS	25.0%
	ACTTAAGTGATGAATGCAAT+TGG	-	Chr1:27407473-27407492	MsG0180001807.01.T04:intron	30.0%
	AGGTAAATGAGATATGAAGT+GGG	+	Chr1:27406568-27406587	None:intergenic	30.0%
	ATATGCTTTGGTGAAAAAGA+AGG	-	Chr1:27408180-27408199	MsG0180001807.01.T04:intron	30.0%
	ATCCAAACAAGACTTAAGTT+TGG	-	Chr1:27408612-27408631	MsG0180001807.01.T04:intron	30.0%
	CTAACTTGAATCATGAATGA+TGG	+	Chr1:27406824-27406843	None:intergenic	30.0%
	CTTAAGTGATGAATGCAATT+GGG	-	Chr1:27407474-27407493	MsG0180001807.01.T04:intron	30.0%
	GACGTGTAATAAAAGAAACT+GGG	+	Chr1:27406527-27406546	None:intergenic	30.0%
	GATGTGGTAAATCTTAATAC+TGG	-	Chr1:27408074-27408093	MsG0180001807.01.T04:intron	30.0%
	GATTAATGATTCATTTGGAC+CGG	+	Chr1:27407607-27407626	None:intergenic	30.0%
	GATTACACATCAAATGACAA+CGG	-	Chr1:27407170-27407189	MsG0180001807.01.T04:intron	30.0%
	GCCCAATATAAAATCTTACA+TGG	-	Chr1:27406908-27406927	MsG0180001807.01.T04:intron	30.0%
	TAGGTAAATGAGATATGAAG+TGG	+	Chr1:27406569-27406588	None:intergenic	30.0%
	TATCATCCCTAATAATGCTT+TGG	-	Chr1:27408819-27408838	MsG0180001807.01.T04:CDS	30.0%
	TCAAGAAACTGCAAAAACAA+TGG	+	Chr1:27408105-27408124	None:intergenic	30.0%
	TGACGTGTAATAAAAGAAAC+TGG	+	Chr1:27406528-27406547	None:intergenic	30.0%
	TGCGTCTAACAAACTAATTA+GGG	+	Chr1:27408280-27408299	None:intergenic	30.0%
	TTGCGTCTAACAAACTAATT+AGG	+	Chr1:27408281-27408300	None:intergenic	30.0%
!	ATTGTGTGATTTTGTTGCAA+CGG	-	Chr1:27407054-27407073	MsG0180001807.01.T04:intron	30.0%
!	CATCATTCATGATTCAAGTT+AGG	-	Chr1:27406822-27406841	MsG0180001807.01.T04:intron	30.0%
!	CGATTTTGTAATGATGAGTT+AGG	-	Chr1:27406886-27406905	MsG0180001807.01.T04:intron	30.0%
!	GTTTTGTACTTCCATGATAT+GGG	-	Chr1:27408716-27408735	MsG0180001807.01.T04:intron	30.0%
!!	AACCAAACTTAAGTCTTGTT+TGG	+	Chr1:27408617-27408636	None:intergenic	30.0%
!!	AGTTTTGTACTTCCATGATA+TGG	-	Chr1:27408715-27408734	MsG0180001807.01.T04:intron	30.0%
!!	ATTAGTTTGTTAGACGCAAT+AGG	-	Chr1:27408282-27408301	MsG0180001807.01.T04:intron	30.0%
!!	CTAAAAAGAAGCATCAAAAC+CGG	-	Chr1:27407664-27407683	MsG0180001807.01.T04:intron	30.0%
!!	CTTAGTCATTGATTCAAGAT+CGG	+	Chr1:27406757-27406776	None:intergenic	30.0%
!!	GTTTTGATGCTTCTTTTTAG+TGG	+	Chr1:27407664-27407683	None:intergenic	30.0%
!!!	ATGCTATTTTGAAGAGCTTA+TGG	+	Chr1:27408459-27408478	None:intergenic	30.0%
!!!	TAACAAAGGCTTGTTTTGAT+TGG	-	Chr1:27408332-27408351	MsG0180001807.01.T04:intron	30.0%
	AATACACCAATAACCATGCT+TGG	-	Chr1:27408045-27408064	MsG0180001807.01.T04:intron	35.0%
	ACAAAGAGGCTAATCAATAC+AGG	+	Chr1:27408217-27408236	None:intergenic	35.0%
	CAAAGAGGCTAATCAATACA+GGG	+	Chr1:27408216-27408235	None:intergenic	35.0%
	CAGTAAGAGTGAGTAAGAAA+AGG	+	Chr1:27407246-27407265	None:intergenic	35.0%
	CTAACTCATCCTTACAAAAC+CGG	+	Chr1:27407022-27407041	None:intergenic	35.0%
	GATACTTCATTGTGTTGCAA+TGG	-	Chr1:27407148-27407167	MsG0180001807.01.T04:intron	35.0%
	GTAATAAAAGAAACTGGGTG+TGG	+	Chr1:27406522-27406541	None:intergenic	35.0%
	GTTATCAGAATTCAGAAGTG+TGG	+	Chr1:27407356-27407375	None:intergenic	35.0%
	TAATCACCTTGGCAGAAAAT+CGG	-	Chr1:27407622-27407641	MsG0180001807.01.T04:intron	35.0%
	TTTGTTGGATGCATATGCTT+TGG	-	Chr1:27408168-27408187	MsG0180001807.01.T04:intron	35.0%
!	ATGATTCAAGTTAGGTCCAT+CGG	-	Chr1:27406830-27406849	MsG0180001807.01.T04:intron	35.0%
!	CAATGGCTTTACAGATCATT+TGG	-	Chr1:27408131-27408150	MsG0180001807.01.T04:intron	35.0%
!	CAGTTTCTTGATAGCTTCAA+TGG	-	Chr1:27408114-27408133	MsG0180001807.01.T04:intron	35.0%
!	GCATGCTTTTAACAATGTCA+CGG	+	Chr1:27407985-27408004	None:intergenic	35.0%
!	TTTTCTTAACCGAGACAAAC+CGG	+	Chr1:27407707-27407726	None:intergenic	35.0%
!!	ATAAAGAAGGGTGTTTGCAA+AGG	-	Chr1:27407867-27407886	MsG0180001807.01.T04:intron	35.0%
!!	GACGCTTATCGTTTTAACAA+AGG	-	Chr1:27408318-27408337	MsG0180001807.01.T04:intron	35.0%
!!	TCACAGTTCATTTTTGCTAC+TGG	-	Chr1:27406476-27406495	MsG0180001807.01.T04:CDS	35.0%
!!	TGAATCATGAATGATGGATC+TGG	+	Chr1:27406818-27406837	None:intergenic	35.0%
!!	TTGATTAGCCTCTTTGTTGT+TGG	-	Chr1:27408220-27408239	MsG0180001807.01.T04:intron	35.0%
	AAGTTAGGTCCATCGGATAT+AGG	-	Chr1:27406837-27406856	MsG0180001807.01.T04:intron	40.0%
	AATGGCAATGTCCCATATCA+TGG	+	Chr1:27408730-27408749	None:intergenic	40.0%
	AATTGAGATCCAGCTCATGA+AGG	+	Chr1:27408795-27408814	None:intergenic	40.0%
	ACAAGGTGCGTGTACATAAA+TGG	+	Chr1:27406964-27406983	None:intergenic	40.0%
	ACGCACCTTGTCTTATAAAG+AGG	-	Chr1:27406973-27406992	MsG0180001807.01.T04:intron	40.0%
	AGGCAAAAGCAACAGAAATC+TGG	+	Chr1:27408775-27408794	None:intergenic	40.0%
	ATCAAACCAAGAACAGTACC+AGG	+	Chr1:27406446-27406465	None:intergenic	40.0%
	ATGCTTTGGTTAATAGCAGC+AGG	-	Chr1:27408833-27408852	MsG0180001807.01.T04:CDS	40.0%
	CAACATCCAAGCATGGTTAT+TGG	+	Chr1:27408054-27408073	None:intergenic	40.0%
	CAATAACCATGCTTGGATGT+TGG	-	Chr1:27408052-27408071	MsG0180001807.01.T04:intron	40.0%
	CAGTCAGGTTCAGATTACAA+TGG	+	Chr1:27407559-27407578	None:intergenic	40.0%
	CCTCTCCTCTTTATAAGACA+AGG	+	Chr1:27406981-27407000	None:intergenic	40.0%
	CCTTACAAAACCGGATTGTA+AGG	+	Chr1:27407013-27407032	None:intergenic	40.0%
	CCTTGTCTTATAAAGAGGAG+AGG	-	Chr1:27406978-27406997	MsG0180001807.01.T04:intron	40.0%
	TAAGATTGATTACAGCTGCG+TGG	-	Chr1:27406773-27406792	MsG0180001807.01.T04:intron	40.0%
	TAATCTGAACCTGACTGATC+CGG	-	Chr1:27407562-27407581	MsG0180001807.01.T04:intron	40.0%
	TTTGACACTCCTCTCCAAAA+TGG	+	Chr1:27408748-27408767	None:intergenic	40.0%
!	AGAAAATCGGACTAGAAACC+AGG	-	Chr1:27407635-27407654	MsG0180001807.01.T04:intron	40.0%
!	CAGAATTCAGAAGTGTGGAA+GGG	+	Chr1:27407351-27407370	None:intergenic	40.0%
!	GATATTGTTGCTGTTACCTG+TGG	+	Chr1:27408662-27408681	None:intergenic	40.0%
!	TCAGAATTCAGAAGTGTGGA+AGG	+	Chr1:27407352-27407371	None:intergenic	40.0%
!!	CCTCTTTGTTGTTGGAGATT+GGG	-	Chr1:27408228-27408247	MsG0180001807.01.T04:intron	40.0%
!!	CCTTACAATCCGGTTTTGTA+AGG	-	Chr1:27407010-27407029	MsG0180001807.01.T04:intron	40.0%
!!	CGGTTTTGTAAGGATGAGTT+AGG	-	Chr1:27407020-27407039	MsG0180001807.01.T04:intron	40.0%
!!	GAGTTTTGTGCTTGCTTTGT+TGG	-	Chr1:27408153-27408172	MsG0180001807.01.T04:intron	40.0%
!!	GATATGGGACATTGCCATTT+TGG	-	Chr1:27408731-27408750	MsG0180001807.01.T04:CDS	40.0%
!!	GCTTCTTTTTAGTGGTTTCC+TGG	+	Chr1:27407656-27407675	None:intergenic	40.0%
!!	GTGTACATAAATGGTGGGTA+TGG	+	Chr1:27406955-27406974	None:intergenic	40.0%
!!	TAAGTTTGGTTCTTGACCAC+TGG	-	Chr1:27408626-27408645	MsG0180001807.01.T04:intron	40.0%
	AAGAATTTCTCTGGCACACC+TGG	-	Chr1:27406425-27406444	MsG0180001807.01.T04:CDS	45.0%
	AGGTGCGTGTACATAAATGG+TGG	+	Chr1:27406961-27406980	None:intergenic	45.0%
	CAAAACTGTAAGTCCAGCTG+AGG	+	Chr1:27408702-27408721	None:intergenic	45.0%
	CCCAATCTCCAACAACAAAG+AGG	+	Chr1:27408231-27408250	None:intergenic	45.0%
	CTGACCTTTAACCCTTGAAC+CGG	-	Chr1:27407736-27407755	MsG0180001807.01.T04:intron	45.0%
	GCATCAAAACCGGACAAAAC+CGG	-	Chr1:27407674-27407693	MsG0180001807.01.T04:intron	45.0%
	GGTGCGTGTACATAAATGGT+GGG	+	Chr1:27406960-27406979	None:intergenic	45.0%
	TGGGATCAGAGCTTATCGAT+CGG	-	Chr1:27406928-27406947	MsG0180001807.01.T04:intron	45.0%
!	GTCTACACAGGTTTAAGGTC+CGG	-	Chr1:27407760-27407779	MsG0180001807.01.T04:intron	45.0%
!	TCTAGTCCGATTTTCTGCCA+AGG	+	Chr1:27407631-27407650	None:intergenic	45.0%
!!	AGAAGGGTGTTTGCAAAGGA+TGG	-	Chr1:27407871-27407890	MsG0180001807.01.T04:intron	45.0%
!!	GCCTCTTTGTTGTTGGAGAT+TGG	-	Chr1:27408227-27408246	MsG0180001807.01.T04:intron	45.0%
!!	TTGCTTTTGCCTTCATGAGC+TGG	-	Chr1:27408783-27408802	MsG0180001807.01.T04:CDS	45.0%
!!	AAAAATAAATAATAATACTT+AGG	+	Chr1:27406588-27406607	None:intergenic	5.0%
	CCACATCCAACATCCAAGCA+TGG	+	Chr1:27408061-27408080	None:intergenic	50.0%
	CCATGCTTGGATGTTGGATG+TGG	-	Chr1:27408058-27408077	MsG0180001807.01.T04:intron	50.0%
	CCTTAAACCTGTGTAGACGC+CGG	+	Chr1:27407758-27407777	None:intergenic	50.0%
	CTTATCGGGCCTATATCCGA+TGG	+	Chr1:27406849-27406868	None:intergenic	50.0%
	GCACTGCTCACCTTACAATC+CGG	-	Chr1:27407000-27407019	MsG0180001807.01.T04:intron	50.0%
	GGGATCAGAGCTTATCGATC+GGG	-	Chr1:27406929-27406948	MsG0180001807.01.T04:intron	50.0%
	TCAAAACCGGACAAAACCGG+CGG	-	Chr1:27407677-27407696	MsG0180001807.01.T04:intron	50.0%
!	TTGCTGTTACCTGTGGAGTG+TGG	+	Chr1:27408655-27408674	None:intergenic	50.0%
!!!	GGGACATTGCCATTTTGGAG+AGG	-	Chr1:27408736-27408755	MsG0180001807.01.T04:CDS	50.0%
	ATTTGGACCGGACGTGTGTC+TGG	+	Chr1:27407595-27407614	None:intergenic	55.0%
	CACTGGTATCCACACTCCAC+AGG	-	Chr1:27408643-27408662	MsG0180001807.01.T04:intron	55.0%
	CCGGCGTCTACACAGGTTTA+AGG	-	Chr1:27407755-27407774	MsG0180001807.01.T04:intron	55.0%
	CTGAGAACCAGACACACGTC+CGG	-	Chr1:27407585-27407604	MsG0180001807.01.T04:intron	55.0%
	CTGTGGAGTGTGGATACCAG+TGG	+	Chr1:27408645-27408664	None:intergenic	55.0%
	GGCACACCTGGTACTGTTCT+TGG	-	Chr1:27406437-27406456	MsG0180001807.01.T04:CDS	55.0%
!!	ACGTGTGTCTGGTTCTCAGC+CGG	+	Chr1:27407584-27407603	None:intergenic	55.0%
!!	CTGTGTAGACGCCGGTTCAA+GGG	+	Chr1:27407750-27407769	None:intergenic	55.0%
!!	GACGCCGGTTCAAGGGTTAA+AGG	+	Chr1:27407743-27407762	None:intergenic	55.0%
	CCTTGAACCGGCGTCTACAC+AGG	-	Chr1:27407748-27407767	MsG0180001807.01.T04:intron	60.0%
	GGTTCTCAGCCGGATCAGTC+AGG	+	Chr1:27407574-27407593	None:intergenic	60.0%
!!	CCTGTGTAGACGCCGGTTCA+AGG	+	Chr1:27407751-27407770	None:intergenic	60.0%
	GAGACAAACCGGCAAGCCGC+CGG	+	Chr1:27407696-27407715	None:intergenic	65.0%
	GCTGCAGCTTCTGCCTCAGC+TGG	-	Chr1:27408686-27408705	MsG0180001807.01.T04:intron	65.0%
	GGACAAAACCGGCGGCTTGC+CGG	-	Chr1:27407685-27407704	MsG0180001807.01.T04:intron	65.0%
!!	GGCGGCTTGCCGGTTTGTCT+CGG	-	Chr1:27407695-27407714	MsG0180001807.01.T04:intron	65.0%
!!!	GGCAAGCCGCCGGTTTTGTC+CGG	+	Chr1:27407686-27407705	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	27406422	27408859	27406422	ID=MsG0180001807.01;Name=MsG0180001807.01
Chr1	mRNA	27406422	27408859	27406422	ID=MsG0180001807.01.T01;Parent=MsG0180001807.01;Name=MsG0180001807.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|0\|0\|3\|0\|152
Chr1	exon	27407032	27407164	27407032	ID=MsG0180001807.01.T01:exon:34789;Parent=MsG0180001807.01.T01
Chr1	CDS	27408729	27408859	27408729	ID=MsG0180001807.01.T01:cds;Parent=MsG0180001807.01.T01
Chr1	CDS	27407032	27407164	27407032	ID=MsG0180001807.01.T01:cds;Parent=MsG0180001807.01.T01
Chr1	CDS	27406422	27406616	27406422	ID=MsG0180001807.01.T01:cds;Parent=MsG0180001807.01.T01
Chr1	mRNA	27406422	27408859	27406422	ID=MsG0180001807.01.T02;Parent=MsG0180001807.01;Name=MsG0180001807.01.T02;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|0\|0\|3\|0\|141
Chr1	exon	27407065	27407164	27407065	ID=MsG0180001807.01.T02:exon:34791;Parent=MsG0180001807.01.T02
Chr1	CDS	27408729	27408859	27408729	ID=MsG0180001807.01.T02:cds;Parent=MsG0180001807.01.T02
Chr1	CDS	27407065	27407164	27407065	ID=MsG0180001807.01.T02:cds;Parent=MsG0180001807.01.T02
Chr1	CDS	27406422	27406616	27406422	ID=MsG0180001807.01.T02:cds;Parent=MsG0180001807.01.T02
Chr1	mRNA	27406422	27408859	27406422	ID=MsG0180001807.01.T03;Parent=MsG0180001807.01;Name=MsG0180001807.01.T03;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|0\|0\|3\|0\|136
Chr1	exon	27407080	27407164	27407080	ID=MsG0180001807.01.T03:exon:34792;Parent=MsG0180001807.01.T03
Chr1	CDS	27408729	27408859	27408729	ID=MsG0180001807.01.T03:cds;Parent=MsG0180001807.01.T03
Chr1	CDS	27407080	27407164	27407080	ID=MsG0180001807.01.T03:cds;Parent=MsG0180001807.01.T03
Chr1	CDS	27406422	27406616	27406422	ID=MsG0180001807.01.T03:cds;Parent=MsG0180001807.01.T03
Chr1	mRNA	27406422	27408859	27406422	ID=MsG0180001807.01.T04;Parent=MsG0180001807.01;Name=MsG0180001807.01.T04;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|0\|0\|3\|0\|132
Chr1	exon	27407092	27407164	27407092	ID=MsG0180001807.01.T04:exon:34793;Parent=MsG0180001807.01.T04
Chr1	CDS	27408729	27408859	27408729	ID=MsG0180001807.01.T04:cds;Parent=MsG0180001807.01.T04
Chr1	CDS	27407092	27407164	27407092	ID=MsG0180001807.01.T04:cds;Parent=MsG0180001807.01.T04
Chr1	CDS	27406422	27406616	27406422	ID=MsG0180001807.01.T04:cds;Parent=MsG0180001807.01.T04
Chr1	mRNA	27406422	27407148	27406422	ID=MsG0180001807.01.T05;Parent=MsG0180001807.01;Name=MsG0180001807.01.T05;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|0\|0\|2\|0\|103
Chr1	exon	27407032	27407148	27407032	ID=MsG0180001807.01.T05:exon:34794;Parent=MsG0180001807.01.T05
Chr1	CDS	27407032	27407148	27407032	ID=MsG0180001807.01.T05:cds;Parent=MsG0180001807.01.T05
Chr1	CDS	27406422	27406616	27406422	ID=MsG0180001807.01.T05:cds;Parent=MsG0180001807.01.T05
Chr1	mRNA	27406422	27406547	27406422	ID=MsG0180001807.01.T06;Parent=MsG0180001807.01;Name=MsG0180001807.01.T06;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|41
Chr1	exon	27406422	27406547	27406422	ID=MsG0180001807.01.T06:exon:34795;Parent=MsG0180001807.01.T06
Chr1	CDS	27406422	27406547	27406422	ID=MsG0180001807.01.T06:cds;Parent=MsG0180001807.01.T06

Gene Sequence

>MsG0180001807.01.T01

ATGAAGAATTTCTCTGGCACACCTGGTACTGTTCTTGGTTTGATTCTCAGAATGTCACAGTTCATTTTTGCTACTGGTTCAATTGCTTCTATTGCTACCACACCCAGTTTCTTTTATTACACGTCATTTTGTTTCTTGATAGCTTCAATGGCTTTACAGATCATTTGGAGTTTTGTGCTTGCTTTGTTGGATGCATATGCTTTGGTGAAAAAGAAGGTTCTGCTTAACCCTGTATTGATTAGCCTCTTTGTTGTTGGAGATTGGGTAACAGCAACAATATCTCTAGCTGCAGCTTCTGCCTCAGCTGGACTTACAGTTTTGTACTTCCATGATATGGGACATTGCCATTTTGGAGAGGAGTGTCAAAAGTACCAGATTTCTGTTGCTTTTGCCTTCATGAGCTGGATCTCAATTTCAATATCATCCCTAATAATGCTTTGGTTAATAGCAGCAGGTTAG

>MsG0180001807.01.T03

ATGAAGAATTTCTCTGGCACACCTGGTACTGTTCTTGGTTTGATTCTCAGAATGTCACAGTTCATTTTTGCTACTGGTTCAATTGCTTCTATTGCTACCACACCCAGTTTCTTTTATTACACGTCATTTTGTTTCTTGATAGCTTCAATGGCTTTACAGATCATTTGGAGTTTTGTGCTTGCTTTGTTGGATGCATATGCTTTGGTGAAAAAGAAGGTAACAGCAACAATATCTCTAGCTGCAGCTTCTGCCTCAGCTGGACTTACAGTTTTGTACTTCCATGATATGGGACATTGCCATTTTGGAGAGGAGTGTCAAAAGTACCAGATTTCTGTTGCTTTTGCCTTCATGAGCTGGATCTCAATTTCAATATCATCCCTAATAATGCTTTGGTTAATAGCAGCAGGTTAG

>MsG0180001807.01.T02

ATGAAGAATTTCTCTGGCACACCTGGTACTGTTCTTGGTTTGATTCTCAGAATGTCACAGTTCATTTTTGCTACTGGTTCAATTGCTTCTATTGCTACCACACCCAGTTTCTTTTATTACACGTCATTTTGTTTCTTGATAGCTTCAATGGCTTTACAGATCATTTGGAGTTTTGTGCTTGCTTTGTTGGATGCATATGCTTTGGTGAAAAAGAAGGTTCTGCTTAACCCTGTAACAGCAACAATATCTCTAGCTGCAGCTTCTGCCTCAGCTGGACTTACAGTTTTGTACTTCCATGATATGGGACATTGCCATTTTGGAGAGGAGTGTCAAAAGTACCAGATTTCTGTTGCTTTTGCCTTCATGAGCTGGATCTCAATTTCAATATCATCCCTAATAATGCTTTGGTTAATAGCAGCAGGTTAG

>MsG0180001807.01.T05

ATGGCTTTACAGATCATTTGGAGTTTTGTGCTTGCTTTGTTGGATGCATATGCTTTGGTGAAAAAGAAGGTTCTGCTTAACCCTGTATTGATTAGCCTCTTTGTTGTTGGAGATTGGGTAACAGCAACAATATCTCTAGCTGCAGCTTCTGCCTCAGCTGGACTTACAGTTTTGTACTTCCATGATATGGGACATTGCCATTTTGGAGAGGAGTGTCAAAAGTACCAGATTTCTGTTGCTTTTGCCTTCATGAGCTGGATCTCAATTTCAATATCATCCCTAATAATGCTTTGGTTAATAGCAGCAGGTTAG

>MsG0180001807.01.T06

ATGGGACATTGCCATTTTGGAGAGGAGTGTCAAAAGTACCAGATTTCTGTTGCTTTTGCCTTCATGAGCTGGATCTCAATTTCAATATCATCCCTAATAATGCTTTGGTTAATAGCAGCAGGTTAG

>MsG0180001807.01.T04

ATGAAGAATTTCTCTGGCACACCTGGTACTGTTCTTGGTTTGATTCTCAGAATGTCACAGTTCATTTTTGCTACTGGTTCAATTGCTTCTATTGCTACCACACCCAGTTTCTTTTATTACACGTCATTTTGTTTCTTGATAGCTTCAATGGCTTTACAGATCATTTGGAGTTTTGTGCTTGCTTTGTTGGATGCATATGCTTTGGTAACAGCAACAATATCTCTAGCTGCAGCTTCTGCCTCAGCTGGACTTACAGTTTTGTACTTCCATGATATGGGACATTGCCATTTTGGAGAGGAGTGTCAAAAGTACCAGATTTCTGTTGCTTTTGCCTTCATGAGCTGGATCTCAATTTCAATATCATCCCTAATAATGCTTTGGTTAATAGCAGCAGGTTAG

Protein sequence

>MsG0180001807.01.T01

MKNFSGTPGTVLGLILRMSQFIFATGSIASIATTPSFFYYTSFCFLIASMALQIIWSFVLALLDAYALVKKKVLLNPVLISLFVVGDWVTATISLAAASASAGLTVLYFHDMGHCHFGEECQKYQISVAFAFMSWISISISSLIMLWLIAAG*

>MsG0180001807.01.T03

MKNFSGTPGTVLGLILRMSQFIFATGSIASIATTPSFFYYTSFCFLIASMALQIIWSFVLALLDAYALVKKKVTATISLAAASASAGLTVLYFHDMGHCHFGEECQKYQISVAFAFMSWISISISSLIMLWLIAAG*

>MsG0180001807.01.T02

MKNFSGTPGTVLGLILRMSQFIFATGSIASIATTPSFFYYTSFCFLIASMALQIIWSFVLALLDAYALVKKKVLLNPVTATISLAAASASAGLTVLYFHDMGHCHFGEECQKYQISVAFAFMSWISISISSLIMLWLIAAG*

>MsG0180001807.01.T05

MALQIIWSFVLALLDAYALVKKKVLLNPVLISLFVVGDWVTATISLAAASASAGLTVLYFHDMGHCHFGEECQKYQISVAFAFMSWISISISSLIMLWLIAAG*

>MsG0180001807.01.T06

MGHCHFGEECQKYQISVAFAFMSWISISISSLIMLWLIAAG*

>MsG0180001807.01.T04

MKNFSGTPGTVLGLILRMSQFIFATGSIASIATTPSFFYYTSFCFLIASMALQIIWSFVLALLDAYALVTATISLAAASASAGLTVLYFHDMGHCHFGEECQKYQISVAFAFMSWISISISSLIMLWLIAAG*