AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024876.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024876.01.T01 MTR_5g018680 90.303 165 3 1 14 178 1 152 1.84e-101 288
MsG0580024876.01.T01 MTR_8g078830 64.242 165 46 1 14 178 1 152 8.40e-69 206
MsG0580024876.01.T01 MTR_4g068780 58.788 165 55 1 14 178 15 166 1.97e-49 157
MsG0580024876.01.T01 MTR_4g021340 37.278 169 89 3 13 178 1 155 4.06e-23 90.1
MsG0580024876.01.T01 MTR_1g073950 36.970 165 89 3 14 177 1 151 4.47e-23 90.1
MsG0580024876.01.T01 MTR_4g058950 31.818 176 106 2 2 177 23 184 1.43e-21 87.0
MsG0580024876.01.T01 MTR_4g103900 69.048 42 13 0 125 166 18 59 1.32e-15 67.8
MsG0580024876.01.T01 MTR_1g074040 41.284 109 60 3 71 177 44 150 8.71e-15 68.2
MsG0580024876.01.T01 MTR_2g028500 78.378 37 8 0 130 166 4 40 1.42e-14 65.1
MsG0580024876.01.T01 MTR_3g057050 82.353 34 6 0 130 163 32 65 1.47e-14 65.5
MsG0580024876.01.T01 MTR_5g006060 77.778 36 8 0 130 165 30 65 1.30e-13 63.2
MsG0580024876.01.T01 MTR_5g077700 46.269 67 34 1 102 166 12 78 2.09e-12 60.1
MsG0580024876.01.T01 MTR_5g015510 74.286 35 9 0 132 166 22 56 2.34e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024876.01.T01 AT3G50810 50.303 165 69 1 14 178 1 152 1.54e-49 157
MsG0580024876.01.T01 AT3G50810 50.303 165 69 1 14 178 1 152 1.54e-49 157
MsG0580024876.01.T01 AT3G50810 50.303 165 69 1 14 178 1 152 1.54e-49 157
MsG0580024876.01.T01 AT4G37235 53.293 167 58 3 14 178 1 149 8.44e-48 153
MsG0580024876.01.T01 AT1G49405 49.315 146 58 4 14 158 1 131 9.25e-29 104
MsG0580024876.01.T01 AT3G23200 35.152 165 92 3 14 177 1 151 1.00e-21 86.7
MsG0580024876.01.T01 AT2G28370 36.416 173 91 3 5 177 25 178 1.50e-21 86.7
MsG0580024876.01.T01 AT3G53850 33.333 168 95 3 14 178 1 154 4.51e-18 77.0
MsG0580024876.01.T01 AT3G53850 33.333 168 95 3 14 178 1 154 4.51e-18 77.0
MsG0580024876.01.T01 AT2G37200 32.353 170 100 2 6 175 23 177 1.15e-16 73.9
MsG0580024876.01.T01 AT2G37200 32.353 170 100 2 6 175 52 206 1.69e-16 74.3
MsG0580024876.01.T01 AT5G02060 34.756 164 92 2 14 175 1 151 3.90e-16 72.0
MsG0580024876.01.T01 AT3G53850 34.615 130 79 3 52 178 15 141 3.64e-13 63.9
MsG0580024876.01.T01 AT3G23200 36.111 108 67 2 71 177 18 124 9.82e-12 59.7

Find 32 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTAGCTTAACTCTTCGTT+TGG 0.218792 5:+11119185 MsG0580024876.01.T01:CDS
GCTCATATTGATAATTGTTT+TGG 0.223338 5:+11121113 MsG0580024876.01.T01:CDS
AACAATGGGTTGAATGATTA+AGG 0.285087 5:+11118523 None:intergenic
TTCTCTTTGTTTCATGTGCT+TGG 0.301881 5:+11119230 MsG0580024876.01.T01:CDS
CTGCTATGGCATTCTTGTCT+TGG 0.339474 5:+11121360 MsG0580024876.01.T01:CDS
TACACTATACAGGTTGTATT+CGG 0.356522 5:-11118556 None:intergenic
GCTATGATGGAGGAACTTCC+AGG 0.362953 5:+11119147 MsG0580024876.01.T01:CDS
TATCTACCACATAACTTTGC+CGG 0.366897 5:-11121326 None:intergenic
ATGGAGCATAACATTGTTCA+TGG 0.382260 5:+11121044 MsG0580024876.01.T01:CDS
GAGGAACTTCCAGGAGCGTT+TGG 0.389602 5:+11119156 MsG0580024876.01.T01:CDS
GCGCTTGTTCCAAACGCTCC+TGG 0.430262 5:-11119165 None:intergenic
TTTGGTAACAGTCATGGGTT+TGG 0.442937 5:+11121014 MsG0580024876.01.T01:CDS
ATATCAGTTGTCTGCTGCTA+TGG 0.456970 5:+11121346 MsG0580024876.01.T01:CDS
GCTAGCTTAACTCTTCGTTT+GGG 0.470108 5:+11119186 MsG0580024876.01.T01:CDS
ACAGGTTGTATTCGGATTGA+AGG 0.472112 5:-11118548 None:intergenic
TATGCTATGCTAGGCTATGA+TGG 0.473594 5:+11119134 MsG0580024876.01.T01:intron
ATCTACCACATAACTTTGCC+GGG 0.481165 5:-11121325 None:intergenic
TGTTTCATGTGCTTGGATGT+TGG 0.490655 5:+11119237 MsG0580024876.01.T01:CDS
AGATAGTATGTTTACAGAGA+AGG 0.499330 5:-11121425 None:intergenic
AGCTGGTAGATCACATTGCC+CGG 0.527740 5:+11121307 MsG0580024876.01.T01:CDS
TCATGGGTTTGGCAATTCCA+TGG 0.530541 5:+11121025 MsG0580024876.01.T01:CDS
AATATGAGCCGTCTTTGAAT+CGG 0.530743 5:-11121099 None:intergenic
ATAGATCTTCTGCATGAAGC+TGG 0.531990 5:+11121290 MsG0580024876.01.T01:CDS
CAGGTTGTATTCGGATTGAA+GGG 0.533666 5:-11118547 None:intergenic
CATTGCCCGGCAAAGTTATG+TGG 0.544949 5:+11121320 MsG0580024876.01.T01:CDS
ATGAACAATGTTATGCTCCA+TGG 0.546574 5:-11121042 None:intergenic
AACATACGAGAAAGAAGTGT+AGG 0.576990 5:-11119268 None:intergenic
CGGTAAACATTGTATGAAGA+CGG 0.580199 5:-11121079 None:intergenic
AATGTTTACCGATTCAAAGA+CGG 0.612615 5:+11121091 MsG0580024876.01.T01:CDS
AAGTTATTGAAGAAAGTGAA+AGG 0.627991 5:-11119291 None:intergenic
AAGATCTATAACACTTGCTG+CGG 0.668935 5:-11121276 None:intergenic
GCTATGCTAGGCTATGATGG+AGG 0.709761 5:+11119137 MsG0580024876.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATTATAATCAAGAAA+TGG - Chr5:11119350-11119369 None:intergenic 15.0%
!! AAATGTATTTGATTCAAATT+TGG + Chr5:11119874-11119893 MsG0580024876.01.T01:intron 15.0%
!! ATTAATATTTACTCATTGTT+CGG + Chr5:11119596-11119615 MsG0580024876.01.T01:intron 15.0%
!! TAACTAAAACTAATAACAAA+GGG - Chr5:11119672-11119691 None:intergenic 15.0%
!! TTAACTAAAACTAATAACAA+AGG - Chr5:11119673-11119692 None:intergenic 15.0%
!!! CTTTTTACTTATATAAAGAT+TGG - Chr5:11119852-11119871 None:intergenic 15.0%
!! AAAGAAAAGTCAAATGTATT+TGG - Chr5:11119901-11119920 None:intergenic 20.0%
!! AATTTCATTCATTCTTCATT+TGG + Chr5:11119460-11119479 MsG0580024876.01.T01:intron 20.0%
!! ATCATTTCTCCTAAAATAAT+AGG - Chr5:11118681-11118700 None:intergenic 20.0%
!! GCATAATATAAGGATAAAAA+AGG + Chr5:11119101-11119120 MsG0580024876.01.T01:intron 20.0%
!! TAAACTATGAATATGCTATA+TGG - Chr5:11120909-11120928 None:intergenic 20.0%
!! TATTAGTCATAGTTATTGAA+AGG - Chr5:11120627-11120646 None:intergenic 20.0%
!! TCTAACAATTGAATATTATG+AGG - Chr5:11119517-11119536 None:intergenic 20.0%
!! TGAATGAAAGATATAAAGAA+TGG - Chr5:11118938-11118957 None:intergenic 20.0%
!! TTAATATTTACTCATTGTTC+GGG + Chr5:11119597-11119616 MsG0580024876.01.T01:intron 20.0%
!! TTACTTATATAAAGATTGGA+GGG - Chr5:11119848-11119867 None:intergenic 20.0%
!! TTTACTTATATAAAGATTGG+AGG - Chr5:11119849-11119868 None:intergenic 20.0%
!!! AATTTTATTCTTGCTTTAAG+TGG - Chr5:11118642-11118661 None:intergenic 20.0%
!!! AGAACAAATGTTTTTTCTTT+CGG + Chr5:11120591-11120610 MsG0580024876.01.T01:intron 20.0%
!!! ATTCATTGTCCTATTATTTT+AGG + Chr5:11118669-11118688 MsG0580024876.01.T01:intron 20.0%
!!! ATTTTATTCTTGCTTTAAGT+GGG - Chr5:11118641-11118660 None:intergenic 20.0%
!!! CTCATATTGATAATTGTTTT+GGG + Chr5:11121114-11121133 MsG0580024876.01.T01:CDS 20.0%
!!! CTTCTTGTCTTTTTAATTTT+TGG + Chr5:11121396-11121415 MsG0580024876.01.T01:CDS 20.0%
!!! CTTTTCTTTATATATAAGAC+CGG + Chr5:11119912-11119931 MsG0580024876.01.T01:intron 20.0%
!!! GATTTCTGAAAGTTTTATTA+GGG - Chr5:11120370-11120389 None:intergenic 20.0%
!!! TCTACTTTTCTTTTGAAAAT+TGG + Chr5:11118804-11118823 MsG0580024876.01.T01:intron 20.0%
!!! TGATTTCTGAAAGTTTTATT+AGG - Chr5:11120371-11120390 None:intergenic 20.0%
!!! TTAGTTAACTTTTTGATAGT+CGG + Chr5:11119685-11119704 MsG0580024876.01.T01:intron 20.0%
! AAAGAGGAATGGAAATAATT+TGG - Chr5:11119006-11119025 None:intergenic 25.0%
! AACTATGACTAATACAAAGT+TGG + Chr5:11120633-11120652 MsG0580024876.01.T01:intron 25.0%
! AAGAGGAATGGAAATAATTT+GGG - Chr5:11119005-11119024 None:intergenic 25.0%
! AAGTGTAAAGAAGAAAAGTT+AGG - Chr5:11120979-11120998 None:intergenic 25.0%
! AAGTTATTGAAGAAAGTGAA+AGG - Chr5:11119294-11119313 None:intergenic 25.0%
! AATTTCCTTCAGTCAATAAT+TGG + Chr5:11119721-11119740 MsG0580024876.01.T01:intron 25.0%
! ACATATTATTATGCTATGCT+AGG + Chr5:11119125-11119144 MsG0580024876.01.T01:intron 25.0%
! ATCAATGAATGAATGAAAAG+AGG - Chr5:11119022-11119041 None:intergenic 25.0%
! ATTTCCTTCAGTCAATAATT+GGG + Chr5:11119722-11119741 MsG0580024876.01.T01:intron 25.0%
! CTAGTATTTAAAAGTGAGTT+TGG - Chr5:11120158-11120177 None:intergenic 25.0%
! CTTTACTCTGATATGATATT+TGG + Chr5:11120843-11120862 MsG0580024876.01.T01:intron 25.0%
! TAAAACTAATAACAAAGGGT+TGG - Chr5:11119668-11119687 None:intergenic 25.0%
! TATAAAGAATGGAAAGTGAA+AGG - Chr5:11118927-11118946 None:intergenic 25.0%
! TGCTATAGCTATAAACTAAT+TGG - Chr5:11119414-11119433 None:intergenic 25.0%
! TTAAGGTTTCAACAAAATTC+CGG + Chr5:11120097-11120116 MsG0580024876.01.T01:intron 25.0%
! TTATCCTTATATTATGCCAA+TGG - Chr5:11119098-11119117 None:intergenic 25.0%
!!! ACTTTTCTTTTGAAAATTGG+TGG + Chr5:11118807-11118826 MsG0580024876.01.T01:intron 25.0%
!!! GCTCATATTGATAATTGTTT+TGG + Chr5:11121113-11121132 MsG0580024876.01.T01:CDS 25.0%
!!! TATAGCTTTAACCAAAATCA+CGG - Chr5:11119823-11119842 None:intergenic 25.0%
!!! TGTTGACTTTAATTTGTTAG+AGG + Chr5:11119381-11119400 MsG0580024876.01.T01:intron 25.0%
!!! TTTTATTCTTGCTTTAAGTG+GGG - Chr5:11118640-11118659 None:intergenic 25.0%
!!! TTTTTTTCTAAGACCAAGTT+AGG + Chr5:11121168-11121187 MsG0580024876.01.T01:intron 25.0%
AACATAGTAATCATCATCAC+AGG - Chr5:11119437-11119456 None:intergenic 30.0%
AAGAAAAGTAGATAGTGACA+CGG - Chr5:11118796-11118815 None:intergenic 30.0%
AAGTGTAATTGTTGGTATGA+TGG + Chr5:11120773-11120792 MsG0580024876.01.T01:intron 30.0%
AATACAAAGTTGGAGTTTCA+AGG + Chr5:11120643-11120662 MsG0580024876.01.T01:intron 30.0%
ACAATAGTAGGATTATGGAA+AGG + Chr5:11120566-11120585 MsG0580024876.01.T01:intron 30.0%
ACGTTAGAAAGAAAAAAGCT+TGG + Chr5:11119050-11119069 MsG0580024876.01.T01:intron 30.0%
AGAGGAATGGAAATAATTTG+GGG - Chr5:11119004-11119023 None:intergenic 30.0%
AGTAACTATACGAATCAATG+AGG - Chr5:11121194-11121213 None:intergenic 30.0%
GAGAATCTAGATAAACACAT+TGG - Chr5:11120740-11120759 None:intergenic 30.0%
TACACTATACAGGTTGTATT+CGG - Chr5:11118559-11118578 None:intergenic 30.0%
TACCATAGAAGAGAAAATGA+GGG - Chr5:11120421-11120440 None:intergenic 30.0%
TCACAATATACTACACTTTG+AGG + Chr5:11120695-11120714 MsG0580024876.01.T01:intron 30.0%
TGAACAATGAAGTATATGTC+TGG - Chr5:11120001-11120020 None:intergenic 30.0%
TGAATGAATGAAAAGAGGAA+TGG - Chr5:11119017-11119036 None:intergenic 30.0%
TGATATGATTTCTGTATTCC+AGG + Chr5:11121220-11121239 MsG0580024876.01.T01:intron 30.0%
TTGGAACAATAGTAGGATTA+TGG + Chr5:11120561-11120580 MsG0580024876.01.T01:intron 30.0%
TTTCCTTCAGTCAATAATTG+GGG + Chr5:11119723-11119742 MsG0580024876.01.T01:intron 30.0%
! ATTACACTTTGAAAACGAAG+TGG - Chr5:11120762-11120781 None:intergenic 30.0%
! CATAGTTTAAAATTCGCAGA+AGG + Chr5:11120920-11120939 MsG0580024876.01.T01:intron 30.0%
! CGTTTTCAAAGTGTAATTGT+TGG + Chr5:11120765-11120784 MsG0580024876.01.T01:intron 30.0%
! TAATTTGGGGTCAAAAAAGA+AGG - Chr5:11118991-11119010 None:intergenic 30.0%
! TATTAAGTGTTTGTTGAGTC+AGG + Chr5:11120466-11120485 MsG0580024876.01.T01:intron 30.0%
! TGTAATTTTGTTGAAACTGC+CGG - Chr5:11120119-11120138 None:intergenic 30.0%
! TTTATTCTTGCTTTAAGTGG+GGG - Chr5:11118639-11118658 None:intergenic 30.0%
!! AATGTTTACCGATTCAAAGA+CGG + Chr5:11121091-11121110 MsG0580024876.01.T01:CDS 30.0%
!! TGACTTTAATTTGTTAGAGG+AGG + Chr5:11119384-11119403 MsG0580024876.01.T01:intron 30.0%
!!! CGGGTTTTTTTTTTTATCCT+TGG + Chr5:11119616-11119635 MsG0580024876.01.T01:intron 30.0%
!!! TAGAAATTTGGTGCACATTT+TGG + Chr5:11120542-11120561 MsG0580024876.01.T01:intron 30.0%
AAAGAATGGAAAGTGAAAGG+TGG - Chr5:11118924-11118943 None:intergenic 35.0%
AACTTAGTGCATGTTTGGAT+TGG + Chr5:11119767-11119786 MsG0580024876.01.T01:intron 35.0%
AAGAATGGAAAGTGAAAGGT+GGG - Chr5:11118923-11118942 None:intergenic 35.0%
AATATGAGCCGTCTTTGAAT+CGG - Chr5:11121102-11121121 None:intergenic 35.0%
AATCCAAACATGCACTAAGT+TGG - Chr5:11119768-11119787 None:intergenic 35.0%
AATTGTTGGTATGATGGCAA+AGG + Chr5:11120779-11120798 MsG0580024876.01.T01:intron 35.0%
ACCATAGAAGAGAAAATGAG+GGG - Chr5:11120420-11120439 None:intergenic 35.0%
ACTTTCTCTCTCTATTGCTT+TGG + Chr5:11118767-11118786 MsG0580024876.01.T01:intron 35.0%
ATGAACAATGTTATGCTCCA+TGG - Chr5:11121045-11121064 None:intergenic 35.0%
ATGAGAGATATGACATAACC+TGG - Chr5:11121241-11121260 None:intergenic 35.0%
ATGGAGCATAACATTGTTCA+TGG + Chr5:11121044-11121063 MsG0580024876.01.T01:CDS 35.0%
ATTGTTGGTATGATGGCAAA+GGG + Chr5:11120780-11120799 MsG0580024876.01.T01:intron 35.0%
CGAACCATTGGCATAATATA+AGG + Chr5:11119091-11119110 MsG0580024876.01.T01:intron 35.0%
CGGTAAACATTGTATGAAGA+CGG - Chr5:11121082-11121101 None:intergenic 35.0%
CTAATAACAAAGGGTTGGAT+AGG - Chr5:11119663-11119682 None:intergenic 35.0%
CTACCATAGAAGAGAAAATG+AGG - Chr5:11120422-11120441 None:intergenic 35.0%
GAGAGATAAAGTTGTCACAT+AGG - Chr5:11118728-11118747 None:intergenic 35.0%
TATCTACCACATAACTTTGC+CGG - Chr5:11121329-11121348 None:intergenic 35.0%
TCACATAGGTTGTCACAAAA+TGG - Chr5:11118714-11118733 None:intergenic 35.0%
TGATAATTGATGCGAACCAT+TGG + Chr5:11119079-11119098 MsG0580024876.01.T01:intron 35.0%
TTACTGGCAAAGTGTATGTT+TGG - Chr5:11120025-11120044 None:intergenic 35.0%
TTGAGGCTTCAACAAAATCA+TGG + Chr5:11120712-11120731 MsG0580024876.01.T01:intron 35.0%
! AACATACGAGAAAGAAGTGT+AGG - Chr5:11119271-11119290 None:intergenic 35.0%
! AAGATCTATAACACTTGCTG+CGG - Chr5:11121279-11121298 None:intergenic 35.0%
! ATAGGCCAACTGATTTAAAC+CGG - Chr5:11119645-11119664 None:intergenic 35.0%
! GTTTAAAATTCGCAGAAGGA+CGG + Chr5:11120924-11120943 MsG0580024876.01.T01:intron 35.0%
! TCGGCAAAAGCTACATTTTA+AGG + Chr5:11120080-11120099 MsG0580024876.01.T01:intron 35.0%
! TTCTCTTTGTTTCATGTGCT+TGG + Chr5:11119230-11119249 MsG0580024876.01.T01:CDS 35.0%
!! CTTTAATTTGTTAGAGGAGG+TGG + Chr5:11119387-11119406 MsG0580024876.01.T01:intron 35.0%
!! GGCTAAAAGCTCTAGAAATT+TGG + Chr5:11120530-11120549 MsG0580024876.01.T01:intron 35.0%
!!! AGGTTTTTGGTAACAGTCAT+GGG + Chr5:11121009-11121028 MsG0580024876.01.T01:intron 35.0%
!!! GATAATTGTTTTGGGAGACA+TGG + Chr5:11121122-11121141 MsG0580024876.01.T01:CDS 35.0%
!!! GATTTTGCCAAACTTGTTAC+TGG - Chr5:11120041-11120060 None:intergenic 35.0%
!!! GCACATTTTGGAACAATAGT+AGG + Chr5:11120554-11120573 MsG0580024876.01.T01:intron 35.0%
!!! TTTTTTTTATCCTTGGCCTC+CGG + Chr5:11119623-11119642 MsG0580024876.01.T01:intron 35.0%
ACAGGTTGTATTCGGATTGA+AGG - Chr5:11118551-11118570 None:intergenic 40.0%
ATAGATCTTCTGCATGAAGC+TGG + Chr5:11121290-11121309 MsG0580024876.01.T01:CDS 40.0%
ATATCAGTTGTCTGCTGCTA+TGG + Chr5:11121346-11121365 MsG0580024876.01.T01:CDS 40.0%
ATCTACCACATAACTTTGCC+GGG - Chr5:11121328-11121347 None:intergenic 40.0%
CACTTTGCCAGTAACAAGTT+TGG + Chr5:11120031-11120050 MsG0580024876.01.T01:intron 40.0%
CAGGTTGTATTCGGATTGAA+GGG - Chr5:11118550-11118569 None:intergenic 40.0%
CTCTCTCTGCTTAGGAATAT+GGG + Chr5:11119491-11119510 MsG0580024876.01.T01:intron 40.0%
GAAGTATATGTCTGGATGAG+CGG - Chr5:11119993-11120012 None:intergenic 40.0%
GGGGTCAAAAAAGAAGGAAA+TGG - Chr5:11118985-11119004 None:intergenic 40.0%
GTACAAAGAATCTGTTCCGT+CGG - Chr5:11118591-11118610 None:intergenic 40.0%
TAGCCAACTTAGTGCATGTT+TGG + Chr5:11119762-11119781 MsG0580024876.01.T01:intron 40.0%
TATGCTATGCTAGGCTATGA+TGG + Chr5:11119134-11119153 MsG0580024876.01.T01:intron 40.0%
TCTCTCTCTGCTTAGGAATA+TGG + Chr5:11119490-11119509 MsG0580024876.01.T01:intron 40.0%
TGACTGTTACCAAAAACCTG+TGG - Chr5:11121008-11121027 None:intergenic 40.0%
TGTTTCATGTGCTTGGATGT+TGG + Chr5:11119237-11119256 MsG0580024876.01.T01:CDS 40.0%
! ACCCCTCATTTTCTCTTCTA+TGG + Chr5:11120416-11120435 MsG0580024876.01.T01:intron 40.0%
! AGCTTTAACCAAAATCACGG+CGG - Chr5:11119820-11119839 None:intergenic 40.0%
! AGTTGGAGTTTCAAGGTGTT+TGG + Chr5:11120650-11120669 MsG0580024876.01.T01:intron 40.0%
! CAACCCCAATTATTGACTGA+AGG - Chr5:11119729-11119748 None:intergenic 40.0%
! GAGCTTTTAGCCATGTGATT+CGG - Chr5:11120522-11120541 None:intergenic 40.0%
! GCACTAAGTTGGCTATATCA+AGG - Chr5:11119757-11119776 None:intergenic 40.0%
! GCTAGCTTAACTCTTCGTTT+GGG + Chr5:11119186-11119205 MsG0580024876.01.T01:CDS 40.0%
! TTTGGTAACAGTCATGGGTT+TGG + Chr5:11121014-11121033 MsG0580024876.01.T01:CDS 40.0%
!! AAGCAAAAAAGCACTCTCTC+CGG - Chr5:11119934-11119953 None:intergenic 40.0%
!! CTTTACACTTGCTATTCCAC+AGG + Chr5:11120989-11121008 MsG0580024876.01.T01:intron 40.0%
!! TTTTAGCCATGTGATTCGGA+TGG - Chr5:11120518-11120537 None:intergenic 40.0%
!!! CAGGTTTTTGGTAACAGTCA+TGG + Chr5:11121008-11121027 MsG0580024876.01.T01:intron 40.0%
!!! CTTGCTATTCCACAGGTTTT+TGG + Chr5:11120996-11121015 MsG0580024876.01.T01:intron 40.0%
!!! GCTTTTTTGCTTCAACACCA+CGG + Chr5:11119942-11119961 MsG0580024876.01.T01:intron 40.0%
CAATCACCATCCGAATCACA+TGG + Chr5:11120509-11120528 MsG0580024876.01.T01:intron 45.0%
CGAATCAATGAGGCCTAACT+TGG - Chr5:11121184-11121203 None:intergenic 45.0%
CGGTGAGATTGGCAAAATCA+CGG - Chr5:11119973-11119992 None:intergenic 45.0%
CTGCTATGGCATTCTTGTCT+TGG + Chr5:11121360-11121379 MsG0580024876.01.T01:CDS 45.0%
GAAGGACGGAAAAAAGGCTT+AGG + Chr5:11120938-11120957 MsG0580024876.01.T01:intron 45.0%
GGAAAGTGAAAGGTGGGAAT+AGG - Chr5:11118917-11118936 None:intergenic 45.0%
TCATGGGTTTGGCAATTCCA+TGG + Chr5:11121025-11121044 MsG0580024876.01.T01:CDS 45.0%
TTCGCAGAAGGACGGAAAAA+AGG + Chr5:11120932-11120951 MsG0580024876.01.T01:intron 45.0%
TTGGTATGATGGCAAAGGGA+GGG + Chr5:11120784-11120803 MsG0580024876.01.T01:intron 45.0%
! AAGATGAACCGCCGTGATTT+TGG + Chr5:11119809-11119828 MsG0580024876.01.T01:intron 45.0%
! ACGTTGTGCCACTGTAACTT+CGG + Chr5:11120061-11120080 MsG0580024876.01.T01:intron 45.0%
! AGCTTTTGCCGAAGTTACAG+TGG - Chr5:11120072-11120091 None:intergenic 45.0%
! CGCTAGCTTAACTCTTCGTT+TGG + Chr5:11119185-11119204 MsG0580024876.01.T01:CDS 45.0%
AGCTGGTAGATCACATTGCC+CGG + Chr5:11121307-11121326 MsG0580024876.01.T01:CDS 50.0%
CATTGCCCGGCAAAGTTATG+TGG + Chr5:11121320-11121339 MsG0580024876.01.T01:CDS 50.0%
CTGATTTAAACCGGAGGCCA+AGG - Chr5:11119636-11119655 None:intergenic 50.0%
GCTATGCTAGGCTATGATGG+AGG + Chr5:11119137-11119156 MsG0580024876.01.T01:intron 50.0%
GGCCTCCGGTTTAAATCAGT+TGG + Chr5:11119637-11119656 MsG0580024876.01.T01:intron 50.0%
GTGCGATGGCTACACTATAC+AGG - Chr5:11118569-11118588 None:intergenic 50.0%
GTTGGTATGATGGCAAAGGG+AGG + Chr5:11120783-11120802 MsG0580024876.01.T01:intron 50.0%
! GCTATGATGGAGGAACTTCC+AGG + Chr5:11119147-11119166 MsG0580024876.01.T01:CDS 50.0%
! GGCCAACTGATTTAAACCGG+AGG - Chr5:11119642-11119661 None:intergenic 50.0%
AATCTGTTCCGTCGGTGCGA+TGG - Chr5:11118583-11118602 None:intergenic 55.0%
CCACGTGTCTCTCTCTGCTT+AGG + Chr5:11119483-11119502 MsG0580024876.01.T01:intron 55.0%
CCTAAGCAGAGAGAGACACG+TGG - Chr5:11119486-11119505 None:intergenic 55.0%
GCAAAATCACGGTAGCACCG+TGG - Chr5:11119962-11119981 None:intergenic 55.0%
GTCTGGATGAGCGGTGAGAT+TGG - Chr5:11119984-11120003 None:intergenic 55.0%
TAGTGTAGCCATCGCACCGA+CGG + Chr5:11118572-11118591 MsG0580024876.01.T01:intron 55.0%
!! GAGGAACTTCCAGGAGCGTT+TGG + Chr5:11119156-11119175 MsG0580024876.01.T01:CDS 55.0%
GCGCTTGTTCCAAACGCTCC+TGG - Chr5:11119168-11119187 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 11118536 11121436 11118536 ID=MsG0580024876.01;Name=MsG0580024876.01
Chr5 mRNA 11118536 11121436 11118536 ID=MsG0580024876.01.T01;Parent=MsG0580024876.01;Name=MsG0580024876.01.T01;_AED=0.47;_eAED=0.54;_QI=0|0|0|1|0.33|0.5|4|0|178
Chr5 exon 11118536 11118568 11118536 ID=MsG0580024876.01.T01:exon:445;Parent=MsG0580024876.01.T01
Chr5 exon 11119147 11119322 11119147 ID=MsG0580024876.01.T01:exon:446;Parent=MsG0580024876.01.T01
Chr5 exon 11121011 11121143 11121011 ID=MsG0580024876.01.T01:exon:447;Parent=MsG0580024876.01.T01
Chr5 exon 11121242 11121436 11121242 ID=MsG0580024876.01.T01:exon:448;Parent=MsG0580024876.01.T01
Chr5 CDS 11118536 11118568 11118536 ID=MsG0580024876.01.T01:cds;Parent=MsG0580024876.01.T01
Chr5 CDS 11119147 11119322 11119147 ID=MsG0580024876.01.T01:cds;Parent=MsG0580024876.01.T01
Chr5 CDS 11121011 11121143 11121011 ID=MsG0580024876.01.T01:cds;Parent=MsG0580024876.01.T01
Chr5 CDS 11121242 11121436 11121242 ID=MsG0580024876.01.T01:cds;Parent=MsG0580024876.01.T01
Gene Sequence

>MsG0580024876.01.T01

ATGATTAAGGACCCTTCAATCCGAATACAACCTGCTATGATGGAGGAACTTCCAGGAGCGTTTGGAACAAGCGCTAGCTTAACTCTTCGTTTGGGTCAAATTGTTTTCTCATCAGCTTCTCTTTGTTTCATGTGCTTGGATGTTGGTTTCTACTCCTACACTTCTTTCTCGTATGTTCCTTTCACTTTCTTCAATAACTTTGTTATCTTGTTTTTGGTAACAGTCATGGGTTTGGCAATTCCATGGAGCATAACATTGTTCATGGTAGATGCTTACTCCGTCTTCATACAATGTTTACCGATTCAAAGACGGCTCATATTGATAATTGTTTTGGGAGACATGGTTATGTCATATCTCTCATTAGCTGCAGCATGTTCCGCAGCAAGTGTTATAGATCTTCTGCATGAAGCTGGTAGATCACATTGCCCGGCAAAGTTATGTGGTAGATATCAGTTGTCTGCTGCTATGGCATTCTTGTCTTGGTTTCTTTCATCAGCTTCTTGTCTTTTTAATTTTTGGATTTTACCTTCTCTGTAA
Protein sequence

>MsG0580024876.01.T01

MIKDPSIRIQPAMMEELPGAFGTSASLTLRLGQIVFSSASLCFMCLDVGFYSYTSFSYVPFTFFNNFVILFLVTVMGLAIPWSITLFMVDAYSVFIQCLPIQRRLILIIVLGDMVMSYLSLAAACSAASVIDLLHEAGRSHCPAKLCGRYQLSAAMAFLSWFLSSASCLFNFWILPSL*