AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001848.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001848.01.T01 MTR_1g085150 90.176 682 61 2 8 688 59 735 0.0 1269
MsG0180001848.01.T01 MTR_1g110430 34.825 514 305 10 170 663 266 769 8.15e-74 254
MsG0180001848.01.T01 MTR_8g009900 27.803 223 130 7 175 376 55 267 4.81e-13 72.8
MsG0180001848.01.T01 MTR_8g009900 26.432 227 128 6 175 376 55 267 8.90e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001848.01.T01 AT5G26710 71.870 679 174 5 5 682 54 716 0.0 1022
MsG0180001848.01.T01 AT1G25350 33.074 514 309 12 173 663 269 770 1.54e-69 243
MsG0180001848.01.T01 AT1G25350 31.214 519 317 13 173 663 269 775 1.53e-60 218
MsG0180001848.01.T01 AT5G64050 25.110 227 136 6 173 376 52 267 3.03e-12 70.1

Find 134 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGGAGAATTTGAAATTA+TGG 0.211763 1:-28205120 MsG0180001848.01.T01:CDS
ACAAAGCCTCATCATAAAAT+TGG 0.223147 1:-28204986 MsG0180001848.01.T01:CDS
TTGACGACTGGCTGGTCTTT+TGG 0.223662 1:+28205598 None:intergenic
ATACTTGTTCAACAATAAAT+TGG 0.225280 1:+28204651 None:intergenic
AATGAATATATTGAATATAT+TGG 0.243135 1:-28205655 MsG0180001848.01.T01:CDS
CGCAATGACCGCAGTGTGTC+TGG 0.261894 1:+28204390 None:intergenic
GCTTAACCCTTGCACGAAAA+AGG 0.284436 1:-28202309 MsG0180001848.01.T01:CDS
CTTATCTACTTCCTTTACTA+TGG 0.287844 1:+28204177 None:intergenic
TCGAGATGAACAAATGAAAA+AGG 0.299397 1:-28205185 MsG0180001848.01.T01:CDS
TTACCTCATTACGAAGAAAA+AGG 0.308169 1:-28204023 MsG0180001848.01.T01:intron
TCAGCAAACGAAAGCTTCTA+TGG 0.315812 1:-28204769 MsG0180001848.01.T01:CDS
CGAATTTAGCCGGTTGAATA+TGG 0.317857 1:-28204804 MsG0180001848.01.T01:CDS
AGATTACTTCCCTGAGTTGA+TGG 0.323642 1:-28205257 MsG0180001848.01.T01:CDS
TGGAGAGAAAGGGATATTTC+AGG 0.324909 1:-28202226 MsG0180001848.01.T01:CDS
GATGTCTGCTGCCTGCCATC+TGG 0.343011 1:+28202152 None:intergenic
TGAAGATAGCCACTGGGTTC+AGG 0.349425 1:+28205457 None:intergenic
GCTATCTGCGCAGGTCTTGC+AGG 0.353784 1:-28206072 MsG0180001848.01.T01:intron
CCCAGTGGCTATCTTCATAT+TGG 0.358754 1:-28205451 MsG0180001848.01.T01:CDS
AAGATACCACATATACAAAA+AGG 0.360107 1:-28204273 MsG0180001848.01.T01:CDS
TCATGGAATGGGACAAGCTT+TGG 0.365289 1:-28204447 MsG0180001848.01.T01:CDS
TCAAATTCTCCTCTACACTA+TGG 0.368726 1:+28205128 None:intergenic
ACCCTGTGACATTCCCATCT+TGG 0.408163 1:+28204152 None:intergenic
GGAAGTAACCTTGATGGATT+GGG 0.417880 1:-28204206 MsG0180001848.01.T01:CDS
AGTATTGCAGCTGGAGAGAA+AGG 0.419290 1:-28202237 MsG0180001848.01.T01:CDS
AGTTGGATACACTTTATACT+TGG 0.420137 1:+28204961 None:intergenic
GGATCACGGAGTGATTTGTT+TGG 0.426882 1:+28205028 None:intergenic
TTCCAATGTAACGCAAAGAA+AGG 0.430174 1:+28206698 None:intergenic
AAAAGAGCAAAGTTGAATCA+TGG 0.437459 1:-28204739 MsG0180001848.01.T01:CDS
AGGAAGTAACCTTGATGGAT+TGG 0.439791 1:-28204207 MsG0180001848.01.T01:CDS
ACGCTTAAGATATCGCATAT+TGG 0.440199 1:+28202265 None:intergenic
GGCTAGTTTGAAAAGCATCT+TGG 0.445460 1:+28206647 None:intergenic
GTATTGCAACGATAATAAAC+AGG 0.447892 1:+28205007 None:intergenic
CCACAAAACTGAAGCTCACT+TGG 0.452027 1:-28204093 MsG0180001848.01.T01:CDS
CTTCCCTGAGTTGATGGAAC+TGG 0.453446 1:-28205251 MsG0180001848.01.T01:CDS
TTATGGAAGGAAATGATTGC+AGG 0.457763 1:-28205103 MsG0180001848.01.T01:CDS
AAATCTCAATCTCATGGAAT+GGG 0.463289 1:-28204458 MsG0180001848.01.T01:CDS
CAAGTATATTGATGACTACT+TGG 0.468006 1:-28206142 MsG0180001848.01.T01:CDS
GCAACTCTTTCTAATTCCTA+TGG 0.469099 1:-28206670 MsG0180001848.01.T01:CDS
TATTCACCTGTACTCTCATC+AGG 0.471109 1:-28206186 MsG0180001848.01.T01:CDS
AAAATCTCAATCTCATGGAA+TGG 0.472161 1:-28204459 MsG0180001848.01.T01:CDS
GATAAAGTGAAGAATGTGAA+TGG 0.472243 1:-28205574 MsG0180001848.01.T01:CDS
ATAAAGTGAAGAATGTGAAT+GGG 0.472454 1:-28205573 MsG0180001848.01.T01:CDS
CAGCTTGAGAAAGATGAGAA+TGG 0.474195 1:-28202356 MsG0180001848.01.T01:CDS
TTCTCATCTACGAATTTAGC+CGG 0.474652 1:-28204814 MsG0180001848.01.T01:CDS
TCCAATATGAAGATAGCCAC+TGG 0.476082 1:+28205450 None:intergenic
TACTTCCTCACCTGCTGATA+CGG 0.478040 1:+28204222 None:intergenic
GCAGTGTGTCTGGGACATAC+AGG 0.479972 1:+28204400 None:intergenic
GTATTGTTAACTCTCACTAA+TGG 0.480697 1:-28204358 MsG0180001848.01.T01:CDS
AGCTTGAGAAAGATGAGAAT+GGG 0.484893 1:-28202355 MsG0180001848.01.T01:CDS
ATGTCTGCTGCCTGCCATCT+GGG 0.485977 1:+28202153 None:intergenic
TCCAATGTAACGCAAAGAAA+GGG 0.490189 1:+28206699 None:intergenic
AATCAAACTCCGTCAATGTC+AGG 0.490680 1:+28204044 None:intergenic
CATAGTAAAGGAAGTAGATA+AGG 0.490754 1:-28204176 MsG0180001848.01.T01:CDS
AAGGTATCACTCATGCCCTT+AGG 0.492827 1:-28204904 MsG0180001848.01.T01:CDS
TGCTGAGCGATACAAAGGTC+AGG 0.492981 1:-28205395 MsG0180001848.01.T01:CDS
GACCAAGATGGGAATGTCAC+AGG 0.497471 1:-28204154 MsG0180001848.01.T01:CDS
ACCCTTTCTTTGCGTTACAT+TGG 0.501029 1:-28206700 MsG0180001848.01.T01:CDS
GGACAGGCAAAATCATAAGT+TGG 0.503923 1:+28204944 None:intergenic
GAGTGTAGACCATATTCAAC+CGG 0.504461 1:+28204795 None:intergenic
GGGATTGCAAATAACACGAT+TGG 0.508386 1:+28202173 None:intergenic
TTCACTTTATCCTTGACGAC+TGG 0.509750 1:+28205586 None:intergenic
CGTGGTATTCACTTGACCTA+AGG 0.510077 1:+28204888 None:intergenic
GACGCAGAGTCCGTATCAGC+AGG 0.511379 1:-28204232 MsG0180001848.01.T01:CDS
TCAGCCAGTTCCATCAACTC+AGG 0.512208 1:+28205247 None:intergenic
TCTGATAACATTAAGGGAGG+AGG 0.512500 1:-28205544 MsG0180001848.01.T01:CDS
TTTCAGGCGCTGGAAAGAGA+TGG 0.513017 1:-28205759 MsG0180001848.01.T01:intron
CTTTATCCTTGACGACTGGC+TGG 0.513178 1:+28205590 None:intergenic
GATCTTCCAGATGCTGAAGT+TGG 0.514176 1:-28205502 MsG0180001848.01.T01:CDS
AAAATTAATTAGCCAGGGTA+AGG 0.515011 1:-28205224 MsG0180001848.01.T01:CDS
GGCATTTCCCCAATCCATCA+AGG 0.517350 1:+28204198 None:intergenic
CCTTCACGAGCATCAACAAA+TGG 0.521928 1:+28204923 None:intergenic
TTCAGGCGCTGGAAAGAGAT+GGG 0.530202 1:-28205758 MsG0180001848.01.T01:intron
GGCGTGCAGTGTTGTGTCCG+TGG 0.531455 1:-28205070 MsG0180001848.01.T01:CDS
ACTAGTTAGCCTGACATTGA+CGG 0.532307 1:-28204053 MsG0180001848.01.T01:CDS
GAAGTAGATAAGGACCAAGA+TGG 0.533557 1:-28204166 MsG0180001848.01.T01:CDS
GGAGAATTTGAAATTATGGA+AGG 0.534607 1:-28205116 MsG0180001848.01.T01:CDS
TTGAAAAGCATCTTGGCCAT+AGG 0.537590 1:+28206654 None:intergenic
GCGTGGAGAAGTATTGCAGC+TGG 0.537955 1:-28202246 MsG0180001848.01.T01:CDS
GGGAATGTCACAGGGTTAAG+TGG 0.540528 1:-28204145 MsG0180001848.01.T01:CDS
ATCGTAATGCTCAGTATCAC+AGG 0.540697 1:-28204865 MsG0180001848.01.T01:CDS
CAGCCAGTTCCATCAACTCA+GGG 0.544119 1:+28205248 None:intergenic
AAAGAGCAAAGTTGAATCAT+GGG 0.544517 1:-28204738 MsG0180001848.01.T01:CDS
AGGTGAGGAAGTAACCTTGA+TGG 0.551874 1:-28204212 MsG0180001848.01.T01:CDS
TATTTGCAATCCCAGATGGC+AGG 0.556570 1:-28202163 MsG0180001848.01.T01:CDS
GTGTTATTTGCAATCCCAGA+TGG 0.560737 1:-28202167 MsG0180001848.01.T01:CDS
AAGTAGATAAGGACCAAGAT+GGG 0.560937 1:-28204165 MsG0180001848.01.T01:CDS
GCAATGACCGCAGTGTGTCT+GGG 0.562664 1:+28204391 None:intergenic
GTGGTATTCACTTGACCTAA+GGG 0.563424 1:+28204889 None:intergenic
TAAGGGAGGAGGCAAGCCTT+CGG 0.564581 1:-28205533 MsG0180001848.01.T01:CDS
ACGAGCATCAACAAATGGAC+AGG 0.568037 1:+28204928 None:intergenic
TTGGGGAAATGCCATAGTAA+AGG 0.578640 1:-28204188 MsG0180001848.01.T01:CDS
TCACAGGATTCAAGAGGACA+TGG 0.578665 1:-28204849 MsG0180001848.01.T01:CDS
GCAGGGCCTGATGAGAGTAC+AGG 0.580273 1:+28206180 None:intergenic
ATGCGGACAAATGATTTCGC+AGG 0.581535 1:+28204334 None:intergenic
GCGTGCAGTGTTGTGTCCGT+GGG 0.585053 1:-28205069 MsG0180001848.01.T01:CDS
GTGTTGTGTCCGTGGGAAGT+TGG 0.586102 1:-28205062 MsG0180001848.01.T01:CDS
ACGATGGTACAATTCAATAG+TGG 0.586943 1:-28205698 MsG0180001848.01.T01:CDS
GCAGATCTAGCTATCTGCGC+AGG 0.590365 1:-28206081 MsG0180001848.01.T01:CDS
AATAACACGATTGGTTTCGA+AGG 0.595364 1:+28202182 None:intergenic
AGAGTCCGTATCAGCAGGTG+AGG 0.595755 1:-28204227 MsG0180001848.01.T01:CDS
GGTTTCGAAGGCTGAACGAA+GGG 0.596688 1:+28202194 None:intergenic
TGGTTTCGAAGGCTGAACGA+AGG 0.596713 1:+28202193 None:intergenic
CCTTGCAGTGTAGGAAATCG+TGG 0.598579 1:+28204710 None:intergenic
TGCAAGGGTTAAGCACATCA+AGG 0.598666 1:+28202318 None:intergenic
AATGATTGCAGGATCAGAGA+GGG 0.601106 1:-28205092 MsG0180001848.01.T01:CDS
GAAAGAGATGGGAAAGCTTG+AGG 0.602516 1:-28205747 MsG0180001848.01.T01:CDS
CCACGATTTCCTACACTGCA+AGG 0.607513 1:-28204710 MsG0180001848.01.T01:CDS
AAAAGACCAGCCAGTCGTCA+AGG 0.611058 1:-28205596 MsG0180001848.01.T01:CDS
CCATTTGTTGATGCTCGTGA+AGG 0.612122 1:-28204923 MsG0180001848.01.T01:CDS
CGCACAATTCCTTGCAGTGT+AGG 0.612505 1:+28204701 None:intergenic
CAGTGTGTCTGGGACATACA+GGG 0.618476 1:+28204401 None:intergenic
TAAAGTGAAGAATGTGAATG+GGG 0.619059 1:-28205572 MsG0180001848.01.T01:CDS
GTATTGCAGCTGGAGAGAAA+GGG 0.620537 1:-28202236 MsG0180001848.01.T01:CDS
CCAATATGAAGATAGCCACT+GGG 0.621615 1:+28205451 None:intergenic
ATGCAGAAACCATAGTGTAG+AGG 0.630682 1:-28205137 MsG0180001848.01.T01:CDS
AATATGCGATATCTTAAGCG+TGG 0.633685 1:-28202263 MsG0180001848.01.T01:CDS
GATACTGAGCATTACGATCG+TGG 0.634209 1:+28204870 None:intergenic
ACCAAGATGGGAATGTCACA+GGG 0.639741 1:-28204153 MsG0180001848.01.T01:CDS
CTTGCATATCCAACTTCCCA+CGG 0.647797 1:+28205053 None:intergenic
AACGATAATAAACAGGATCA+CGG 0.648773 1:+28205014 None:intergenic
CGATTTGCACCTGAACCCAG+TGG 0.648921 1:-28205466 MsG0180001848.01.T01:CDS
AATTCAATAGTGGCAGAACA+TGG 0.653058 1:-28205688 MsG0180001848.01.T01:CDS
GGAAGATCTATCTCTGCCGA+AGG 0.658068 1:+28205517 None:intergenic
GAAGTAACCTTGATGGATTG+GGG 0.667338 1:-28204205 MsG0180001848.01.T01:CDS
TCAGTATCACAGGATTCAAG+AGG 0.673861 1:-28204855 MsG0180001848.01.T01:CDS
CAGACACACTGCGGTCATTG+CGG 0.674648 1:-28204389 MsG0180001848.01.T01:CDS
CTGCAAGGAATTGTGCGTAG+AGG 0.680567 1:-28204695 MsG0180001848.01.T01:CDS
AATATCAAAATCTTGCACGA+TGG 0.684460 1:-28205714 MsG0180001848.01.T01:CDS
CACAGGATTCAAGAGGACAT+GGG 0.686727 1:-28204848 MsG0180001848.01.T01:CDS
CATCAACATATGCCTTACCC+TGG 0.687143 1:+28205212 None:intergenic
AAATGATTGCAGGATCAGAG+AGG 0.689019 1:-28205093 MsG0180001848.01.T01:CDS
CTAACTAGTTCATCTAACTG+AGG 0.697091 1:+28204067 None:intergenic
ATGATTGCAGGATCAGAGAG+GGG 0.699565 1:-28205091 MsG0180001848.01.T01:CDS
TGTATGTCCCAGACACACTG+CGG 0.755590 1:-28204398 MsG0180001848.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATATATTGAATATAT+TGG - Chr1:28203199-28203218 MsG0180001848.01.T01:intron 10.0%
!! CTAAAATAAATTTAAAAACT+TGG + Chr1:28205442-28205461 None:intergenic 10.0%
!! TTCAAAAAATAATCAAATAT+TGG - Chr1:28205701-28205720 MsG0180001848.01.T01:CDS 10.0%
!!! TATTTTTAAAACATTTTGTA+TGG - Chr1:28205413-28205432 MsG0180001848.01.T01:CDS 10.0%
!! ACAAATTCTTATAACATAAT+TGG + Chr1:28206271-28206290 None:intergenic 15.0%
!! TAAAAACTTTCATAAGATTT+GGG - Chr1:28205909-28205928 MsG0180001848.01.T01:intron 15.0%
!! TTAGCTTATACTTTATATTA+TGG - Chr1:28205210-28205229 MsG0180001848.01.T01:CDS 15.0%
!!! AAATTTATTTTAGAGCATTT+TGG - Chr1:28205449-28205468 MsG0180001848.01.T01:CDS 15.0%
!!! AATTTATTTTAGAGCATTTT+GGG - Chr1:28205450-28205469 MsG0180001848.01.T01:CDS 15.0%
!!! ATGTTATAAGAATTTGTTAA+CGG - Chr1:28206274-28206293 MsG0180001848.01.T01:intron 15.0%
!!! GTCAATAATTTTTTTATTGA+TGG + Chr1:28204434-28204453 None:intergenic 15.0%
!! AAATCCTGATAAAGAAAAAA+AGG - Chr1:28203504-28203523 MsG0180001848.01.T01:intron 20.0%
!! AAGCAAATAAAAACTTAAAC+AGG + Chr1:28206472-28206491 None:intergenic 20.0%
!! AATAAAAAACCATAAAAGAG+AGG + Chr1:28205530-28205549 None:intergenic 20.0%
!! AATTGCACTTCATTAATATT+GGG - Chr1:28205052-28205071 MsG0180001848.01.T01:CDS 20.0%
!! ACAAAAATAATCTATTGTTG+TGG - Chr1:28203011-28203030 MsG0180001848.01.T01:intron 20.0%
!! AGCAAATAAAAACTTAAACA+GGG + Chr1:28206471-28206490 None:intergenic 20.0%
!! ATACTTGTTCAACAATAAAT+TGG + Chr1:28204206-28204225 None:intergenic 20.0%
!! ATATATCAGAAAAAATAACC+TGG + Chr1:28202231-28202250 None:intergenic 20.0%
!! ATTGAATATATTGGCAAAAA+AGG - Chr1:28203208-28203227 MsG0180001848.01.T01:intron 20.0%
!! CTTACTAACAAATAAGAATA+TGG - Chr1:28204271-28204290 MsG0180001848.01.T01:CDS 20.0%
!! GTAAAAACTTTCATAAGATT+TGG - Chr1:28205908-28205927 MsG0180001848.01.T01:intron 20.0%
!! TAAAGAAAAAAAGGAATTTG+TGG - Chr1:28203513-28203532 MsG0180001848.01.T01:intron 20.0%
!! TCAAAAAAGTTATCAAATAG+CGG - Chr1:28206036-28206055 MsG0180001848.01.T01:intron 20.0%
!! TTTCAACTAAAATCAAATAG+CGG + Chr1:28205377-28205396 None:intergenic 20.0%
!!! AATTCCTTTTTTTCTTTATC+AGG + Chr1:28203511-28203530 None:intergenic 20.0%
!!! ATAATTTTGAGTTTATACGT+TGG - Chr1:28202428-28202447 MsG0180001848.01.T01:intron 20.0%
!!! ATTTATTTTAGAGCATTTTG+GGG - Chr1:28205451-28205470 MsG0180001848.01.T01:CDS 20.0%
!!! GAGTTTTTAATTGTCTTTTA+AGG - Chr1:28202316-28202335 MsG0180001848.01.T01:CDS 20.0%
!!! GATTTTTCTGATAACATTAA+GGG - Chr1:28203304-28203323 MsG0180001848.01.T01:intron 20.0%
!!! TAGTTTAACCGTTAATTTTA+GGG - Chr1:28202461-28202480 MsG0180001848.01.T01:intron 20.0%
!!! TTAGTTTAACCGTTAATTTT+AGG - Chr1:28202460-28202479 MsG0180001848.01.T01:intron 20.0%
!!! TTTAATGTCTTTCTTTTGAT+TGG - Chr1:28205000-28205019 MsG0180001848.01.T01:CDS 20.0%
!!! TTTGTTTCTGTCATTAATAA+AGG - Chr1:28204871-28204890 MsG0180001848.01.T01:CDS 20.0%
! AAAAAAGATGTTGAGATGTT+GGG - Chr1:28203544-28203563 MsG0180001848.01.T01:intron 25.0%
! AAGATACCACATATACAAAA+AGG - Chr1:28204581-28204600 MsG0180001848.01.T01:intron 25.0%
! ATAAAGTGAAGAATGTGAAT+GGG - Chr1:28203281-28203300 MsG0180001848.01.T01:intron 25.0%
! ATAAGTTGTTTAACCAAACA+AGG + Chr1:28202342-28202361 None:intergenic 25.0%
! ATATATTGGCAAAAAAGGAT+CGG - Chr1:28203213-28203232 MsG0180001848.01.T01:intron 25.0%
! ATCAAAAAATCTCAATCTCA+TGG - Chr1:28204390-28204409 MsG0180001848.01.T01:CDS 25.0%
! ATGATAAACACATACGTATT+AGG - Chr1:28202389-28202408 MsG0180001848.01.T01:intron 25.0%
! CATTGCATTATCTATTCATT+TGG - Chr1:28205152-28205171 MsG0180001848.01.T01:CDS 25.0%
! GAATTGCACTTCATTAATAT+TGG - Chr1:28205051-28205070 MsG0180001848.01.T01:CDS 25.0%
! TAATTTCATCATACTCTTGA+TGG - Chr1:28203043-28203062 MsG0180001848.01.T01:intron 25.0%
! TGATAAACACATACGTATTA+GGG - Chr1:28202390-28202409 MsG0180001848.01.T01:intron 25.0%
!! GGATTTTTCTGATAACATTA+AGG - Chr1:28203303-28203322 MsG0180001848.01.T01:intron 25.0%
!! TAGAGGAGAATTTGAAATTA+TGG - Chr1:28203734-28203753 MsG0180001848.01.T01:intron 25.0%
!! TATAGGTTGACAATAGTTTA+GGG - Chr1:28202493-28202512 MsG0180001848.01.T01:intron 25.0%
!! TTATAGGTTGACAATAGTTT+AGG - Chr1:28202492-28202511 MsG0180001848.01.T01:intron 25.0%
!!! AAATAAGAAGTGTCTTTCAT+AGG + Chr1:28205113-28205132 None:intergenic 25.0%
!!! GTATGCACTTTTAAGAAATT+GGG + Chr1:28206379-28206398 None:intergenic 25.0%
!!! TTCCTCTATCTTTTGATTTT+TGG - Chr1:28205552-28205571 MsG0180001848.01.T01:CDS 25.0%
!!! TTTTTTCTTCCTCTCTTTTA+TGG - Chr1:28205518-28205537 MsG0180001848.01.T01:CDS 25.0%
AAAAAGGAGATTCTAGCATA+TGG - Chr1:28206561-28206580 MsG0180001848.01.T01:intron 30.0%
AAAAGAGCAAAGTTGAATCA+TGG - Chr1:28204115-28204134 MsG0180001848.01.T01:CDS 30.0%
AAAATCTCAATCTCATGGAA+TGG - Chr1:28204395-28204414 MsG0180001848.01.T01:CDS 30.0%
AAAATTAATTAGCCAGGGTA+AGG - Chr1:28203630-28203649 MsG0180001848.01.T01:intron 30.0%
AAAGAGCAAAGTTGAATCAT+GGG - Chr1:28204116-28204135 MsG0180001848.01.T01:CDS 30.0%
AAATCTCAATCTCATGGAAT+GGG - Chr1:28204396-28204415 MsG0180001848.01.T01:CDS 30.0%
AAATTAAAGCCAAGGCTTAT+TGG + Chr1:28206188-28206207 None:intergenic 30.0%
AACAAATGAAAAAGGAGAGA+AGG - Chr1:28203677-28203696 MsG0180001848.01.T01:intron 30.0%
AACGATAATAAACAGGATCA+CGG + Chr1:28203843-28203862 None:intergenic 30.0%
AATATCAAAATCTTGCACGA+TGG - Chr1:28203140-28203159 MsG0180001848.01.T01:intron 30.0%
AATCACAGGTAAAGATGAAT+AGG + Chr1:28202833-28202852 None:intergenic 30.0%
ACAAAGCCTCATCATAAAAT+TGG - Chr1:28203868-28203887 MsG0180001848.01.T01:intron 30.0%
ACAAATGAAAAAGGAGAGAA+GGG - Chr1:28203678-28203697 MsG0180001848.01.T01:intron 30.0%
ACCCTAAACCCTAAAATTAA+CGG + Chr1:28202472-28202491 None:intergenic 30.0%
AGGTAAAGATGAATAGGTAT+AGG + Chr1:28202827-28202846 None:intergenic 30.0%
AGTTGGATACACTTTATACT+TGG + Chr1:28203896-28203915 None:intergenic 30.0%
ATCTGAAAAGTCAAAGAAAC+AGG + Chr1:28202632-28202651 None:intergenic 30.0%
CATAGTAAAGGAAGTAGATA+AGG - Chr1:28204678-28204697 MsG0180001848.01.T01:CDS 30.0%
CCACATATACAAAAAGGATA+TGG - Chr1:28204587-28204606 MsG0180001848.01.T01:intron 30.0%
CTTATCTACTTCCTTTACTA+TGG + Chr1:28204680-28204699 None:intergenic 30.0%
GAAAAAAGATGTTGAGATGT+TGG - Chr1:28203543-28203562 MsG0180001848.01.T01:intron 30.0%
GATAAAGTGAAGAATGTGAA+TGG - Chr1:28203280-28203299 MsG0180001848.01.T01:intron 30.0%
GCTGAAAAATTAATTAGCCA+GGG - Chr1:28203625-28203644 MsG0180001848.01.T01:intron 30.0%
GGACAATAATAAGGACAATA+TGG + Chr1:28206348-28206367 None:intergenic 30.0%
GTATTGCAACGATAATAAAC+AGG + Chr1:28203850-28203869 None:intergenic 30.0%
GTATTGTTAACTCTCACTAA+TGG - Chr1:28204496-28204515 MsG0180001848.01.T01:intron 30.0%
TAAAGTGAAGAATGTGAATG+GGG - Chr1:28203282-28203301 MsG0180001848.01.T01:intron 30.0%
TATAGTGGTATGACAAATAG+TGG + Chr1:28205730-28205749 None:intergenic 30.0%
TATATTGGCAAAAAAGGATC+GGG - Chr1:28203214-28203233 MsG0180001848.01.T01:intron 30.0%
TCGAGATGAACAAATGAAAA+AGG - Chr1:28203669-28203688 MsG0180001848.01.T01:intron 30.0%
TGCAATCTAGATTCTAGATA+AGG + Chr1:28202957-28202976 None:intergenic 30.0%
TGCCAAAAATCAAAAGATAG+AGG + Chr1:28205557-28205576 None:intergenic 30.0%
TTAAGACTTCGATACTATGT+TGG - Chr1:28205827-28205846 MsG0180001848.01.T01:intron 30.0%
TTACCTCATTACGAAGAAAA+AGG - Chr1:28204831-28204850 MsG0180001848.01.T01:CDS 30.0%
TTGTTGAACAAGTATGTACA+AGG - Chr1:28204211-28204230 MsG0180001848.01.T01:CDS 30.0%
TTGTTTAGGGATCAAATTGA+AGG - Chr1:28202566-28202585 MsG0180001848.01.T01:intron 30.0%
! AGTGATCAACATTTTAAGCA+TGG + Chr1:28204346-28204365 None:intergenic 30.0%
! ATACCTTTTTCTTCGTAATG+AGG + Chr1:28204837-28204856 None:intergenic 30.0%
! CAAGTATATTGATGACTACT+TGG - Chr1:28202712-28202731 MsG0180001848.01.T01:intron 30.0%
! CCATATCCTTTTTGTATATG+TGG + Chr1:28204590-28204609 None:intergenic 30.0%
! GGAGAATTTGAAATTATGGA+AGG - Chr1:28203738-28203757 MsG0180001848.01.T01:intron 30.0%
! TATCCCGCTATAACATTTTT+GGG - Chr1:28206075-28206094 MsG0180001848.01.T01:CDS 30.0%
! TGACTTTTCAGATTGATGAA+TGG - Chr1:28202639-28202658 MsG0180001848.01.T01:intron 30.0%
! TGTTTAGTGATTGCATTTTG+TGG - Chr1:28202879-28202898 MsG0180001848.01.T01:intron 30.0%
! TTGGATCCAATTTTATGATG+AGG + Chr1:28203877-28203896 None:intergenic 30.0%
! TTTTCTGATAACATTAAGGG+AGG - Chr1:28203307-28203326 MsG0180001848.01.T01:intron 30.0%
!! ACTTTTAAGAAATTGGGATC+AGG + Chr1:28206373-28206392 None:intergenic 30.0%
!! GATTAGTTTCTTATCCTTTG+CGG + Chr1:28206145-28206164 None:intergenic 30.0%
!! GGTATGCACTTTTAAGAAAT+TGG + Chr1:28206380-28206399 None:intergenic 30.0%
!!! AACCGTTAATTTTAGGGTTT+AGG - Chr1:28202467-28202486 MsG0180001848.01.T01:intron 30.0%
!!! ACCGTTAATTTTAGGGTTTA+GGG - Chr1:28202468-28202487 MsG0180001848.01.T01:intron 30.0%
!!! TTTTAGGGTTTAGGGTTTAT+AGG - Chr1:28202476-28202495 MsG0180001848.01.T01:intron 30.0%
AAATGACACTTTGGTCTAAG+TGG - Chr1:28206217-28206236 MsG0180001848.01.T01:intron 35.0%
AAGTAGATAAGGACCAAGAT+GGG - Chr1:28204689-28204708 MsG0180001848.01.T01:CDS 35.0%
AAGTTATCAAATAGCGGTCA+TGG - Chr1:28206042-28206061 MsG0180001848.01.T01:intron 35.0%
AATATGCGATATCTTAAGCG+TGG - Chr1:28206591-28206610 MsG0180001848.01.T01:intron 35.0%
AATTCAATAGTGGCAGAACA+TGG - Chr1:28203166-28203185 MsG0180001848.01.T01:intron 35.0%
ACCATACAACAGAGTCAATT+TGG + Chr1:28205487-28205506 None:intergenic 35.0%
ACGATGGTACAATTCAATAG+TGG - Chr1:28203156-28203175 MsG0180001848.01.T01:intron 35.0%
ACGCTTAAGATATCGCATAT+TGG + Chr1:28206592-28206611 None:intergenic 35.0%
AGCTTGAGAAAGATGAGAAT+GGG - Chr1:28206499-28206518 MsG0180001848.01.T01:intron 35.0%
ATAAAATAAACCCTCTCAGC+AGG + Chr1:28202929-28202948 None:intergenic 35.0%
ATATTGGCAAAAAAGGATCG+GGG - Chr1:28203215-28203234 MsG0180001848.01.T01:intron 35.0%
ATCTTTACCTGTGATTCCTA+TGG - Chr1:28202837-28202856 MsG0180001848.01.T01:intron 35.0%
CTAACTAGTTCATCTAACTG+AGG + Chr1:28204790-28204809 None:intergenic 35.0%
GCAACTCTTTCTAATTCCTA+TGG - Chr1:28202184-28202203 MsG0180001848.01.T01:CDS 35.0%
GCAATCACTAAACAAACACA+AGG + Chr1:28202873-28202892 None:intergenic 35.0%
GGCTGAAAAATTAATTAGCC+AGG - Chr1:28203624-28203643 MsG0180001848.01.T01:intron 35.0%
GTGCTATAAAACTAGTTCCA+TGG + Chr1:28206326-28206345 None:intergenic 35.0%
TAAAATAAACCCTCTCAGCA+GGG + Chr1:28202928-28202947 None:intergenic 35.0%
TCAAATTCTCCTCTACACTA+TGG + Chr1:28203729-28203748 None:intergenic 35.0%
TCCAATGTAACGCAAAGAAA+GGG + Chr1:28202158-28202177 None:intergenic 35.0%
TCTCTCTCAAATTAAAGCCA+AGG + Chr1:28206196-28206215 None:intergenic 35.0%
TTAAGAAATTGGGATCAGGA+CGG + Chr1:28206369-28206388 None:intergenic 35.0%
TTATGGAAGGAAATGATTGC+AGG - Chr1:28203751-28203770 MsG0180001848.01.T01:intron 35.0%
TTCAACATTGTAGCCAATCT+CGG + Chr1:28205801-28205820 None:intergenic 35.0%
TTCCAATGTAACGCAAAGAA+AGG + Chr1:28202159-28202178 None:intergenic 35.0%
TTCCATGGAAAGTTCATGAA+AGG + Chr1:28206311-28206330 None:intergenic 35.0%
TTCTCATCTACGAATTTAGC+CGG - Chr1:28204040-28204059 MsG0180001848.01.T01:CDS 35.0%
TTGTGTCAGTAGAAATCGTA+TGG + Chr1:28204940-28204959 None:intergenic 35.0%
! AACCAAAGTGTCTATGCATA+GGG + Chr1:28206401-28206420 None:intergenic 35.0%
! ACAAAAAGTATGAAGCTGCT+GGG - Chr1:28204554-28204573 MsG0180001848.01.T01:intron 35.0%
! ACAAGGATTTCCTTTTCCAT+AGG + Chr1:28202856-28202875 None:intergenic 35.0%
! ACCAAATTGACTCTGTTGTA+TGG - Chr1:28205483-28205502 MsG0180001848.01.T01:CDS 35.0%
! AGTGGTGTTTTACATCTTGA+AGG - Chr1:28204727-28204746 MsG0180001848.01.T01:CDS 35.0%
! ATCCCGCTATAACATTTTTG+GGG - Chr1:28206076-28206095 MsG0180001848.01.T01:CDS 35.0%
! CTATCCCGCTATAACATTTT+TGG - Chr1:28206074-28206093 MsG0180001848.01.T01:CDS 35.0%
! TAATAGTCAATTGCGGATTG+CGG + Chr1:28206116-28206135 None:intergenic 35.0%
! TATTTTGCTGAGCGATACAA+AGG - Chr1:28203454-28203473 MsG0180001848.01.T01:intron 35.0%
! TGCATCCATTTTCAAAAGCA+GGG + Chr1:28202694-28202713 None:intergenic 35.0%
! TTGCATCCATTTTCAAAAGC+AGG + Chr1:28202695-28202714 None:intergenic 35.0%
! TTTTGTGCTTAGGTATGATG+CGG + Chr1:28204540-28204559 None:intergenic 35.0%
!! AATAACACGATTGGTTTCGA+AGG + Chr1:28206675-28206694 None:intergenic 35.0%
!! CTTTTGATTGGCTGTATCTA+TGG - Chr1:28205012-28205031 MsG0180001848.01.T01:CDS 35.0%
!! GCTTCATACTTTTTGTGCTT+AGG + Chr1:28204550-28204569 None:intergenic 35.0%
!!! GAGAAGCGTACATTTTTAGT+TGG - Chr1:28202734-28202753 MsG0180001848.01.T01:intron 35.0%
!!! TTGTCTTTTAAGGCCTTGTT+TGG - Chr1:28202326-28202345 MsG0180001848.01.T01:CDS 35.0%
AAATCAAATAGCGGCTGAAG+CGG + Chr1:28205368-28205387 None:intergenic 40.0%
AAATGATTGCAGGATCAGAG+AGG - Chr1:28203761-28203780 MsG0180001848.01.T01:intron 40.0%
AATCAAACTCCGTCAATGTC+AGG + Chr1:28204813-28204832 None:intergenic 40.0%
AATGATTGCAGGATCAGAGA+GGG - Chr1:28203762-28203781 MsG0180001848.01.T01:intron 40.0%
ACCCTTTCTTTGCGTTACAT+TGG - Chr1:28202154-28202173 MsG0180001848.01.T01:CDS 40.0%
ACCTGTGATTCCTATGGAAA+AGG - Chr1:28202843-28202862 MsG0180001848.01.T01:intron 40.0%
ACTGTTCTCTGTACTTGTAC+AGG - Chr1:28204363-28204382 MsG0180001848.01.T01:CDS 40.0%
AGTTCAGAGACATAGTTCGA+GGG - Chr1:28202536-28202555 MsG0180001848.01.T01:intron 40.0%
ATCCGCTTTGCTCTATTGTT+TGG - Chr1:28202988-28203007 MsG0180001848.01.T01:intron 40.0%
ATCGTAATGCTCAGTATCAC+AGG - Chr1:28203989-28204008 MsG0180001848.01.T01:intron 40.0%
ATGCAGAAACCATAGTGTAG+AGG - Chr1:28203717-28203736 MsG0180001848.01.T01:intron 40.0%
ATTAATATTGGGTCGAAGCG+TGG - Chr1:28205063-28205082 MsG0180001848.01.T01:CDS 40.0%
CAGCTTGAGAAAGATGAGAA+TGG - Chr1:28206498-28206517 MsG0180001848.01.T01:intron 40.0%
CATACGTATTAGGGTCTGTT+TGG - Chr1:28202399-28202418 MsG0180001848.01.T01:intron 40.0%
CCAATATGAAGATAGCCACT+GGG + Chr1:28203406-28203425 None:intergenic 40.0%
CGAATTTAGCCGGTTGAATA+TGG - Chr1:28204050-28204069 MsG0180001848.01.T01:CDS 40.0%
CGACCCCAAAAATGTTATAG+CGG + Chr1:28206082-28206101 None:intergenic 40.0%
CTGTTCTCTGTACTTGTACA+GGG - Chr1:28204364-28204383 MsG0180001848.01.T01:CDS 40.0%
GAAGTAGATAAGGACCAAGA+TGG - Chr1:28204688-28204707 MsG0180001848.01.T01:CDS 40.0%
GACCCCAAAAATGTTATAGC+GGG + Chr1:28206081-28206100 None:intergenic 40.0%
GACCTTTCATGAACTTTCCA+TGG - Chr1:28206306-28206325 MsG0180001848.01.T01:intron 40.0%
GAGAGAGAGAAATGACACTT+TGG - Chr1:28206208-28206227 MsG0180001848.01.T01:intron 40.0%
GAGTGTAGACCATATTCAAC+CGG + Chr1:28204062-28204081 None:intergenic 40.0%
GATCAGGACGGACAATAATA+AGG + Chr1:28206357-28206376 None:intergenic 40.0%
GGACAGGCAAAATCATAAGT+TGG + Chr1:28203913-28203932 None:intergenic 40.0%
GGGATTGCAAATAACACGAT+TGG + Chr1:28206684-28206703 None:intergenic 40.0%
GTCCAAACAATAGAGCAAAG+CGG + Chr1:28202993-28203012 None:intergenic 40.0%
GTGGTATTCACTTGACCTAA+GGG + Chr1:28203968-28203987 None:intergenic 40.0%
TAAAGCCAAGGCTTATTGGT+GGG + Chr1:28206184-28206203 None:intergenic 40.0%
TACCCTATGCATAGACACTT+TGG - Chr1:28206396-28206415 MsG0180001848.01.T01:intron 40.0%
TAGTTCAGAGACATAGTTCG+AGG - Chr1:28202535-28202554 MsG0180001848.01.T01:intron 40.0%
TATTCACCTGTACTCTCATC+AGG - Chr1:28202668-28202687 MsG0180001848.01.T01:intron 40.0%
TATTGGCAAAAAAGGATCGG+GGG - Chr1:28203216-28203235 MsG0180001848.01.T01:intron 40.0%
TCAGCAAACGAAAGCTTCTA+TGG - Chr1:28204085-28204104 MsG0180001848.01.T01:CDS 40.0%
TCAGTATCACAGGATTCAAG+AGG - Chr1:28203999-28204018 MsG0180001848.01.T01:intron 40.0%
TCCAATATGAAGATAGCCAC+TGG + Chr1:28203407-28203426 None:intergenic 40.0%
TCTGATAACATTAAGGGAGG+AGG - Chr1:28203310-28203329 MsG0180001848.01.T01:intron 40.0%
TGGAGAGAAAGGGATATTTC+AGG - Chr1:28206628-28206647 MsG0180001848.01.T01:intron 40.0%
TGTTCTCTGTACTTGTACAG+GGG - Chr1:28204365-28204384 MsG0180001848.01.T01:CDS 40.0%
TTAAAGCCAAGGCTTATTGG+TGG + Chr1:28206185-28206204 None:intergenic 40.0%
TTCACTTTATCCTTGACGAC+TGG + Chr1:28203271-28203290 None:intergenic 40.0%
TTGGGGAAATGCCATAGTAA+AGG - Chr1:28204666-28204685 MsG0180001848.01.T01:CDS 40.0%
! ACTAGTTAGCCTGACATTGA+CGG - Chr1:28204801-28204820 MsG0180001848.01.T01:CDS 40.0%
! ACTTTTCCAACTTCAGCATC+TGG + Chr1:28203361-28203380 None:intergenic 40.0%
! AGATGCTTTTCAAACTAGCC+AGG - Chr1:28202210-28202229 MsG0180001848.01.T01:CDS 40.0%
! AGATTACTTCCCTGAGTTGA+TGG - Chr1:28203597-28203616 MsG0180001848.01.T01:intron 40.0%
! AGGAAGTAACCTTGATGGAT+TGG - Chr1:28204647-28204666 MsG0180001848.01.T01:intron 40.0%
! CACAAAAAGTATGAAGCTGC+TGG - Chr1:28204553-28204572 MsG0180001848.01.T01:intron 40.0%
! CATCTACACTATGCCTTTTC+AGG - Chr1:28203079-28203098 MsG0180001848.01.T01:intron 40.0%
! CGAAGAAAAAGGTATGTGCT+TGG - Chr1:28204842-28204861 MsG0180001848.01.T01:CDS 40.0%
! CTGAAAAGGCATAGTGTAGA+TGG + Chr1:28203081-28203100 None:intergenic 40.0%
! GAACCAAAGTGTCTATGCAT+AGG + Chr1:28206402-28206421 None:intergenic 40.0%
! TCCTTTTCCATAGGAATCAC+AGG + Chr1:28202847-28202866 None:intergenic 40.0%
!! AGAATCTCCTTTTTCGTGCA+AGG + Chr1:28206555-28206574 None:intergenic 40.0%
!! GAAGTAACCTTGATGGATTG+GGG - Chr1:28204649-28204668 MsG0180001848.01.T01:intron 40.0%
!! GAATCTCCTTTTTCGTGCAA+GGG + Chr1:28206554-28206573 None:intergenic 40.0%
!! GGAAGTAACCTTGATGGATT+GGG - Chr1:28204648-28204667 MsG0180001848.01.T01:intron 40.0%
!! GGCTAGTTTGAAAAGCATCT+TGG + Chr1:28202210-28202229 None:intergenic 40.0%
!! GTGTTATTTGCAATCCCAGA+TGG - Chr1:28206687-28206706 MsG0180001848.01.T01:CDS 40.0%
!! TTGAAAAGCATCTTGGCCAT+AGG + Chr1:28202203-28202222 None:intergenic 40.0%
!!! CGCTATAACATTTTTGGGGT+CGG - Chr1:28206080-28206099 MsG0180001848.01.T01:CDS 40.0%
ACCAAGATGGGAATGTCACA+GGG - Chr1:28204701-28204720 MsG0180001848.01.T01:CDS 45.0%
ACGAGCATCAACAAATGGAC+AGG + Chr1:28203929-28203948 None:intergenic 45.0%
ACTTAAACAGGGAAGCAAGC+AGG + Chr1:28206460-28206479 None:intergenic 45.0%
AGGTGAGGAAGTAACCTTGA+TGG - Chr1:28204642-28204661 MsG0180001848.01.T01:intron 45.0%
AGTATTGCAGCTGGAGAGAA+AGG - Chr1:28206617-28206636 MsG0180001848.01.T01:intron 45.0%
ATGAAAAAGGAGAGAAGGGC+TGG - Chr1:28203682-28203701 MsG0180001848.01.T01:intron 45.0%
ATGATTGCAGGATCAGAGAG+GGG - Chr1:28203763-28203782 MsG0180001848.01.T01:intron 45.0%
ATGCGGACAAATGATTTCGC+AGG + Chr1:28204523-28204542 None:intergenic 45.0%
CACAGGATTCAAGAGGACAT+GGG - Chr1:28204006-28204025 MsG0180001848.01.T01:intron 45.0%
CATCAACATATGCCTTACCC+TGG + Chr1:28203645-28203664 None:intergenic 45.0%
CCACAAAACTGAAGCTCACT+TGG - Chr1:28204761-28204780 MsG0180001848.01.T01:CDS 45.0%
CCCAGTGGCTATCTTCATAT+TGG - Chr1:28203403-28203422 MsG0180001848.01.T01:intron 45.0%
CCTTCACGAGCATCAACAAA+TGG + Chr1:28203934-28203953 None:intergenic 45.0%
CGAGGGTGAGTGATTGTTTA+GGG - Chr1:28202553-28202572 MsG0180001848.01.T01:intron 45.0%
CGTGGTATTCACTTGACCTA+AGG + Chr1:28203969-28203988 None:intergenic 45.0%
CTTGCATATCCAACTTCCCA+CGG + Chr1:28203804-28203823 None:intergenic 45.0%
GAAAGAGATGGGAAAGCTTG+AGG - Chr1:28203107-28203126 MsG0180001848.01.T01:intron 45.0%
GATACTGAGCATTACGATCG+TGG + Chr1:28203987-28204006 None:intergenic 45.0%
GATCTTCCAGATGCTGAAGT+TGG - Chr1:28203352-28203371 MsG0180001848.01.T01:intron 45.0%
GCTTAACCCTTGCACGAAAA+AGG - Chr1:28206545-28206564 MsG0180001848.01.T01:intron 45.0%
GTATTGCAGCTGGAGAGAAA+GGG - Chr1:28206618-28206637 MsG0180001848.01.T01:intron 45.0%
GTTCTCTGTACTTGTACAGG+GGG - Chr1:28204366-28204385 MsG0180001848.01.T01:CDS 45.0%
TACTTCCTCACCTGCTGATA+CGG + Chr1:28204635-28204654 None:intergenic 45.0%
TAGTTGTATCCCTGCTGAGA+GGG - Chr1:28202916-28202935 MsG0180001848.01.T01:intron 45.0%
TATCACCCACCAATAAGCCT+TGG - Chr1:28206176-28206195 MsG0180001848.01.T01:CDS 45.0%
TATTTGCAATCCCAGATGGC+AGG - Chr1:28206691-28206710 MsG0180001848.01.T01:CDS 45.0%
TCACAGGATTCAAGAGGACA+TGG - Chr1:28204005-28204024 MsG0180001848.01.T01:intron 45.0%
TCATGGAATGGGACAAGCTT+TGG - Chr1:28204407-28204426 MsG0180001848.01.T01:CDS 45.0%
TCGAGGGTGAGTGATTGTTT+AGG - Chr1:28202552-28202571 MsG0180001848.01.T01:intron 45.0%
TGCAAGGGTTAAGCACATCA+AGG + Chr1:28206539-28206558 None:intergenic 45.0%
TTGTAGCCAATCTCGGATAG+CGG + Chr1:28205794-28205813 None:intergenic 45.0%
! AAGGTATCACTCATGCCCTT+AGG - Chr1:28203950-28203969 MsG0180001848.01.T01:intron 45.0%
! CCAAGTGAGCTTCAGTTTTG+TGG + Chr1:28204764-28204783 None:intergenic 45.0%
! CCATTTGTTGATGCTCGTGA+AGG - Chr1:28203931-28203950 MsG0180001848.01.T01:intron 45.0%
!! GGATCACGGAGTGATTTGTT+TGG + Chr1:28203829-28203848 None:intergenic 45.0%
!! TCAGGCCCTGCTTTTGAAAA+TGG - Chr1:28202686-28202705 MsG0180001848.01.T01:intron 45.0%
AAAAGACCAGCCAGTCGTCA+AGG - Chr1:28203258-28203277 MsG0180001848.01.T01:intron 50.0%
ACCCTGTGACATTCCCATCT+TGG + Chr1:28204705-28204724 None:intergenic 50.0%
ATGGACACGTGAATTGCTCG+TGG + Chr1:28204921-28204940 None:intergenic 50.0%
CAGCCAGTTCCATCAACTCA+GGG + Chr1:28203609-28203628 None:intergenic 50.0%
CCACGATTTCCTACACTGCA+AGG - Chr1:28204144-28204163 MsG0180001848.01.T01:CDS 50.0%
CCTTGCAGTGTAGGAAATCG+TGG + Chr1:28204147-28204166 None:intergenic 50.0%
CGCACAATTCCTTGCAGTGT+AGG + Chr1:28204156-28204175 None:intergenic 50.0%
CGCTACGACAATTAGCGTAG+CGG + Chr1:28205313-28205332 None:intergenic 50.0%
CGCTACGCTAATTGTCGTAG+CGG - Chr1:28205311-28205330 MsG0180001848.01.T01:CDS 50.0%
CTAGTTGTATCCCTGCTGAG+AGG - Chr1:28202915-28202934 MsG0180001848.01.T01:intron 50.0%
CTCTCAGCAGGGATACAACT+AGG + Chr1:28202917-28202936 None:intergenic 50.0%
CTGCAAGGAATTGTGCGTAG+AGG - Chr1:28204159-28204178 MsG0180001848.01.T01:CDS 50.0%
CTTTATCCTTGACGACTGGC+TGG + Chr1:28203267-28203286 None:intergenic 50.0%
GACCAAGATGGGAATGTCAC+AGG - Chr1:28204700-28204719 MsG0180001848.01.T01:CDS 50.0%
GCAGGGATACAACTAGGTCT+AGG + Chr1:28202911-28202930 None:intergenic 50.0%
GGAAGATCTATCTCTGCCGA+AGG + Chr1:28203340-28203359 None:intergenic 50.0%
GGCATTTCCCCAATCCATCA+AGG + Chr1:28204659-28204678 None:intergenic 50.0%
GGGAATGTCACAGGGTTAAG+TGG - Chr1:28204709-28204728 MsG0180001848.01.T01:CDS 50.0%
GGTTTCGAAGGCTGAACGAA+GGG + Chr1:28206663-28206682 None:intergenic 50.0%
TCAGCCAGTTCCATCAACTC+AGG + Chr1:28203610-28203629 None:intergenic 50.0%
TCTCTTTCCAGCGCCTGAAA+AGG + Chr1:28203095-28203114 None:intergenic 50.0%
TGAAGATAGCCACTGGGTTC+AGG + Chr1:28203400-28203419 None:intergenic 50.0%
TGCTGAGCGATACAAAGGTC+AGG - Chr1:28203459-28203478 MsG0180001848.01.T01:intron 50.0%
TGGTTTCGAAGGCTGAACGA+AGG + Chr1:28206664-28206683 None:intergenic 50.0%
TGTATGTCCCAGACACACTG+CGG - Chr1:28204456-28204475 MsG0180001848.01.T01:CDS 50.0%
! CAGTGTGTCTGGGACATACA+GGG + Chr1:28204456-28204475 None:intergenic 50.0%
!! AACCCGCTATCCCACTTTTG+AGG - Chr1:28205754-28205773 MsG0180001848.01.T01:CDS 50.0%
!! CTTCCCTGAGTTGATGGAAC+TGG - Chr1:28203603-28203622 MsG0180001848.01.T01:intron 50.0%
!! GATAGCGGGTTAGCGTATAG+TGG + Chr1:28205745-28205764 None:intergenic 50.0%
!! TTCAGGCGCTGGAAAGAGAT+GGG - Chr1:28203096-28203115 MsG0180001848.01.T01:intron 50.0%
!! TTTCAGGCGCTGGAAAGAGA+TGG - Chr1:28203095-28203114 MsG0180001848.01.T01:intron 50.0%
!!! TTGACGACTGGCTGGTCTTT+TGG + Chr1:28203259-28203278 None:intergenic 50.0%
AGAGTCCGTATCAGCAGGTG+AGG - Chr1:28204627-28204646 MsG0180001848.01.T01:intron 55.0%
AGCGGTGCGGAATGAGATAG+CGG - Chr1:28205329-28205348 MsG0180001848.01.T01:CDS 55.0%
ATGTCTGCTGCCTGCCATCT+GGG + Chr1:28206704-28206723 None:intergenic 55.0%
CAGACACACTGCGGTCATTG+CGG - Chr1:28204465-28204484 MsG0180001848.01.T01:CDS 55.0%
CAGTCAATAGCGGCCGATAG+CGG - Chr1:28205251-28205270 MsG0180001848.01.T01:CDS 55.0%
CGATTTGCACCTGAACCCAG+TGG - Chr1:28203388-28203407 MsG0180001848.01.T01:intron 55.0%
CGCTAATTGTCGTAGCGGTG+CGG - Chr1:28205316-28205335 MsG0180001848.01.T01:CDS 55.0%
CGGCCTCAAAAGTGGGATAG+CGG + Chr1:28205760-28205779 None:intergenic 55.0%
GCAATGACCGCAGTGTGTCT+GGG + Chr1:28204466-28204485 None:intergenic 55.0%
GCAGATCTAGCTATCTGCGC+AGG - Chr1:28202773-28202792 MsG0180001848.01.T01:intron 55.0%
GCCGCCATAGCAGTCAATAG+CGG - Chr1:28205241-28205260 MsG0180001848.01.T01:CDS 55.0%
GGCCTCAAAAGTGGGATAGC+GGG + Chr1:28205759-28205778 None:intergenic 55.0%
GTGTTGTGTCCGTGGGAAGT+TGG - Chr1:28203792-28203811 MsG0180001848.01.T01:intron 55.0%
TAAGGGAGGAGGCAAGCCTT+CGG - Chr1:28203321-28203340 MsG0180001848.01.T01:intron 55.0%
TACGCACCGCTATCCGAGAT+TGG - Chr1:28205785-28205804 MsG0180001848.01.T01:intron 55.0%
TAGAGGCCGGCCTCAAAAGT+GGG + Chr1:28205767-28205786 None:intergenic 55.0%
! GAGATAGCGGCAGCAGATAG+CGG - Chr1:28205342-28205361 MsG0180001848.01.T01:CDS 55.0%
! GCAGTGTGTCTGGGACATAC+AGG + Chr1:28204457-28204476 None:intergenic 55.0%
! GCCGCTATTGACTGCTATGG+CGG + Chr1:28205245-28205264 None:intergenic 55.0%
! TCGGCCGCTATTGACTGCTA+TGG + Chr1:28205248-28205267 None:intergenic 55.0%
!! CACTATGCCTTTTCAGGCGC+TGG - Chr1:28203085-28203104 MsG0180001848.01.T01:intron 55.0%
!! GCGTGGAGAAGTATTGCAGC+TGG - Chr1:28206608-28206627 MsG0180001848.01.T01:intron 55.0%
!!! CGCTATCCCACTTTTGAGGC+CGG - Chr1:28205758-28205777 MsG0180001848.01.T01:intron 55.0%
!!! GACTGGCTGGTCTTTTGGCT+CGG + Chr1:28203254-28203273 None:intergenic 55.0%
CGCAATGACCGCAGTGTGTC+TGG + Chr1:28204467-28204486 None:intergenic 60.0%
CGTCGCCGCTATGCTACATG+CGG + Chr1:28205288-28205307 None:intergenic 60.0%
GACGCAGAGTCCGTATCAGC+AGG - Chr1:28204622-28204641 MsG0180001848.01.T01:intron 60.0%
GATGTCTGCTGCCTGCCATC+TGG + Chr1:28206705-28206724 None:intergenic 60.0%
GCGTGCAGTGTTGTGTCCGT+GGG - Chr1:28203785-28203804 MsG0180001848.01.T01:intron 60.0%
GCTATCTGCGCAGGTCTTGC+AGG - Chr1:28202782-28202801 MsG0180001848.01.T01:intron 60.0%
GGCAGCCGCATGTAGCATAG+CGG - Chr1:28205280-28205299 MsG0180001848.01.T01:CDS 60.0%
GTAGAGGCCGGCCTCAAAAG+TGG + Chr1:28205768-28205787 None:intergenic 60.0%
! GCAGGGCCTGATGAGAGTAC+AGG + Chr1:28202677-28202696 None:intergenic 60.0%
! TCTCGGATAGCGGTGCGTAG+AGG + Chr1:28205784-28205803 None:intergenic 60.0%
GGCGTGCAGTGTTGTGTCCG+TGG - Chr1:28203784-28203803 MsG0180001848.01.T01:intron 65.0%
GGCTGCCATAGCGCCGCTAT+CGG + Chr1:28205267-28205286 None:intergenic 65.0%
! GGATAGCGGTGCGTAGAGGC+CGG + Chr1:28205780-28205799 None:intergenic 65.0%
! TTGCGGATTGCGGCGCGTAG+CGG + Chr1:28206106-28206125 None:intergenic 65.0%
! AGCGGCCGATAGCGGCGCTA+TGG - Chr1:28205259-28205278 MsG0180001848.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 28202142 28206734 28202142 ID=MsG0180001848.01;Name=MsG0180001848.01
Chr1 mRNA 28202142 28206734 28202142 ID=MsG0180001848.01.T01;Parent=MsG0180001848.01;Name=MsG0180001848.01.T01;_AED=0.10;_eAED=0.10;_QI=0|0.75|0.6|1|1|1|5|0|688
Chr1 exon 28206645 28206734 28206645 ID=MsG0180001848.01.T01:exon:41829;Parent=MsG0180001848.01.T01
Chr1 exon 28206073 28206226 28206073 ID=MsG0180001848.01.T01:exon:41828;Parent=MsG0180001848.01.T01
Chr1 exon 28204655 28205775 28204655 ID=MsG0180001848.01.T01:exon:41827;Parent=MsG0180001848.01.T01
Chr1 exon 28204024 28204491 28204024 ID=MsG0180001848.01.T01:exon:41826;Parent=MsG0180001848.01.T01
Chr1 exon 28202142 28202375 28202142 ID=MsG0180001848.01.T01:exon:41825;Parent=MsG0180001848.01.T01
Chr1 CDS 28206645 28206734 28206645 ID=MsG0180001848.01.T01:cds;Parent=MsG0180001848.01.T01
Chr1 CDS 28206073 28206226 28206073 ID=MsG0180001848.01.T01:cds;Parent=MsG0180001848.01.T01
Chr1 CDS 28204655 28205775 28204655 ID=MsG0180001848.01.T01:cds;Parent=MsG0180001848.01.T01
Chr1 CDS 28204024 28204491 28204024 ID=MsG0180001848.01.T01:cds;Parent=MsG0180001848.01.T01
Chr1 CDS 28202142 28202375 28202142 ID=MsG0180001848.01.T01:cds;Parent=MsG0180001848.01.T01
Gene Sequence

>MsG0180001848.01.T01

ATGGATATCAAAACCCTTTCTTTGCGTTACATTGGAAGAACTGCAACTCTTTCTAATTCCTATGGCCAAGATGCTTTTCAAACTAGCCAGATTGATGAATGGCTAGAGTATTCACCTGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTTATTCATTATCAATCGCAGATCTAGCTATCTGCGCAGGTCTTGCAGGCGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCAATAGTGGCAGAACATGGTACTGCATTAAATGAATATATTGAATATATTGGCAAAAAAGGATCGGGGGAGTCATCTGCAACCGAGCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTGAAGAATGTGAATGGGGATTTTTCTGATAACATTAAGGGAGGAGGCAAGCCTTCGGCAGAGATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCATATTGGACACGCAAAAGCAGCTCTGTTGAACAAGTATTTTGCTGAGCGATACAAAGGTCAGGTTATTTTGCGTTTCGATGATACAAATCCTGATAAAGAAAAAAAGGAATTTGTGGACAATTTGAAAAAAGATGTTGAGATGTTGGGTGTCAAATATGAAAAAATTACATATACATCAGATTACTTCCCTGAGTTGATGGAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCATATGTTGATGACACTCGAGATGAACAAATGAAAAAGGAGAGAAGGGCTGGCATAGAGTCTAAATGCAGAAACCATAGTGTAGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCGTGCAGTGTTGTGTCCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAATACAAAGCCTCATCATAAAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCCTGTCCATTTGTTGATGCTCGTGAAGGTATCACTCATGCCCTTAGGTCAAGTGAATACCACGATCGTAATGCTCAGTATCACAGGATTCAAGAGGACATGGGAGTTAAGAAAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTCTATGGTTTGTTGAAAAGAGCAAAGTTGAATCATGGGATGATCCACGATTTCCTACACTGCAAGGAATTGTGCGTAGAGGCTTGAAAATTGAAGCGCTAATCCAATTTATTGTTGAACAAGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTTTGGACCATCAATAAAAAAATTATTGACCCTGTATGTCCCAGACACACTGCGGTCATTGCGGATAGACGTGTATTGTTAACTCTCACTAATGGTCCTGCGAAATCATTTGTCCGCATCATACCTAAGCACAAAAAGTATGAAGCTGCTGGGAATAAAGATACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCCGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAGTAGATAAGGACCAAGATGGGAATGTCACAGGGTTAAGTGGTGTTTTACATCTTGAAGGATCTGTGAAGACCACAAAACTGAAGCTCACTTGGCTACCTCAGTTAGATGAACTAGTTAGCCTGACATTGACGGAGTTTGATTACCTCATTACGAAGAAAAAGCTTGAGAAAGATGAGAATGGGAAAGAAGAGAATTTCCTTGATGTGCTTAACCCTTGCACGAAAAAGGAGATTCTAGCATATGGAGACTCCAATATGCGATATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCGTTCAGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA
Protein sequence

>MsG0180001848.01.T01

MDIKTLSLRYIGRTATLSNSYGQDAFQTSQIDEWLEYSPVLSSGPAFENGCKYIDDYLEKRTFLVGYSLSIADLAICAGLAGAGKRWESLRKSKKYQNLARWYNSIVAEHGTALNEYIEYIGKKGSGESSATEPKDQPVVKDKVKNVNGDFSDNIKGGGKPSAEIDLPDAEVGKVRLRFAPEPSGYLHIGHAKAALLNKYFAERYKGQVILRFDDTNPDKEKKEFVDNLKKDVEMLGVKYEKITYTSDYFPELMELAEKLISQGKAYVDDTRDEQMKKERRAGIESKCRNHSVEENLKLWKEMIAGSERGVQCCVRGKLDMQDPNKSLRDPVYYRCNTKPHHKIGSKYKVYPTYDFACPFVDAREGITHALRSSEYHDRNAQYHRIQEDMGVKKVLIYEFSRLNMVYTLLSKRKLLWFVEKSKVESWDDPRFPTLQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADRRVLLTLTNGPAKSFVRIIPKHKKYEAAGNKDTTYTKRIWIDYADAESVSAGEEVTLMDWGNAIVKEVDKDQDGNVTGLSGVLHLEGSVKTTKLKLTWLPQLDELVSLTLTEFDYLITKKKLEKDENGKEENFLDVLNPCTKKEILAYGDSNMRYLKRGEVLQLERKGYFRCDVPFVQPSKPIVLFAIPDGRQQTSLK*