AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001868.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001868.01.T01 MTR_1g045550 84.000 300 4 1 37 292 85 384 3.42e-174 491
MsG0180001868.01.T01 MTR_7g098930 70.432 301 44 2 37 292 84 384 7.80e-148 424
MsG0180001868.01.T01 MTR_1g079760 71.475 305 38 2 37 292 84 388 3.15e-146 421
MsG0180001868.01.T01 MTR_7g113340 67.774 301 52 2 37 292 84 384 1.20e-141 408
MsG0180001868.01.T01 MTR_3g463730 61.204 299 72 2 37 292 51 348 7.75e-123 359
MsG0180001868.01.T01 MTR_7g115050 30.732 205 106 7 101 292 165 346 9.29e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001868.01.T01 AT4G13510 75.083 301 30 1 37 292 79 379 4.87e-157 447
MsG0180001868.01.T01 AT3G24300 73.422 301 35 1 37 292 83 383 9.87e-151 431
MsG0180001868.01.T01 AT3G24290 73.333 300 36 1 37 292 83 382 3.42e-150 430
MsG0180001868.01.T01 AT4G28700 69.967 303 44 2 37 292 88 390 4.53e-144 415
MsG0180001868.01.T01 AT1G64780 69.836 305 43 4 37 292 89 393 2.62e-137 398

Find 80 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGTATTGCTGGTCTTT+GGG 0.199248 1:-28413371 MsG0180001868.01.T01:CDS
AGTGCTTCTCTTGTTGTTCT+TGG 0.217241 1:-28413277 MsG0180001868.01.T01:CDS
TTGGTGGTATTGCTGGTCTT+TGG 0.246084 1:-28413372 MsG0180001868.01.T01:CDS
ATTCTCAGTCCTTATAATTC+AGG 0.269091 1:-28413199 MsG0180001868.01.T01:intron
TTCTTGGCACTTTCATGCTT+TGG 0.277934 1:-28413261 MsG0180001868.01.T01:CDS
TTTATGTTCTTTGAGTTAAA+AGG 0.320032 1:-28417539 MsG0180001868.01.T01:CDS
ACACCTTCAAATGGTTTCAT+TGG 0.325076 1:-28413684 MsG0180001868.01.T01:CDS
CATATGGTTGGTGGTATTGC+TGG 0.332447 1:-28413379 MsG0180001868.01.T01:CDS
CTTATTGAAGGTCCGCGAAT+TGG 0.341909 1:-28413343 MsG0180001868.01.T01:CDS
ATTGGACGGTTCGATCATTC+TGG 0.345994 1:-28413325 MsG0180001868.01.T01:CDS
GGCACTTTCATGCTTTGGTT+TGG 0.354842 1:-28413256 MsG0180001868.01.T01:CDS
TGTAATTGAGCTGCTTCTAA+TGG 0.374360 1:+28412770 None:intergenic
CGTTAGCGCCGCAGTGCAAC+CGG 0.376707 1:+28412988 None:intergenic
CTTTCATGCTTTGGTTTGGT+TGG 0.380571 1:-28413252 MsG0180001868.01.T01:CDS
TTCATTGGAAAACATTTCTT+CGG 0.397824 1:-28413669 MsG0180001868.01.T01:CDS
GTGGTGTGGTTCAACTAGTT+TGG 0.402775 1:-28417492 MsG0180001868.01.T01:CDS
TGGCTCCGGTGTTGTTCATA+TGG 0.406317 1:-28413395 MsG0180001868.01.T01:CDS
CTTTGGGGAGCACTTATTGA+AGG 0.417245 1:-28413355 MsG0180001868.01.T01:CDS
AGTTAACTACCTGAATTATA+AGG 0.425481 1:+28413190 None:intergenic
GTCATTGATTTCGCTGGCTC+CGG 0.428565 1:-28413409 MsG0180001868.01.T01:CDS
AAAGAATTCTCTCCGGTCAC+TGG 0.431120 1:-28412952 MsG0180001868.01.T01:CDS
ATGCTTTGGTTTGGTTGGTA+TGG 0.433222 1:-28413247 MsG0180001868.01.T01:CDS
AGAATCTTGGTGAAGGAACC+AGG 0.441335 1:+28413217 None:intergenic
GGTTGGTATGGTTTCAACCC+TGG 0.447548 1:-28413235 MsG0180001868.01.T01:CDS
CGTTCGTAGCATGATGTTCA+TGG 0.453897 1:+28413769 None:intergenic
TTTCCAATGAAACCATTTGA+AGG 0.457318 1:+28413681 None:intergenic
AACGTCCTCGACGCTGCTGC+TGG 0.476966 1:-28413750 MsG0180001868.01.T01:CDS
GGTCGAGCTGTCGCCCTTCG+CGG 0.478333 1:-28413304 MsG0180001868.01.T01:CDS
GGTGGTATTGCTGGTCTTTG+GGG 0.480605 1:-28413370 MsG0180001868.01.T01:CDS
ACCGGAGTCATTGATTTCGC+TGG 0.484326 1:-28413415 MsG0180001868.01.T01:intron
TCCGGTGTTGTTCATATGGT+TGG 0.488732 1:-28413391 MsG0180001868.01.T01:CDS
TACACGGAGGGTGTGGCGCG+TGG 0.489104 1:-28412751 MsG0180001868.01.T01:CDS
ACACGGAGGGTGTGGCGCGT+GGG 0.494163 1:-28412750 MsG0180001868.01.T01:CDS
ATTATAAGGACTGAGAATCT+TGG 0.495971 1:+28413204 None:intergenic
GGCAATGGAGTGCGGTGGGG+AGG 0.498972 1:-28413033 MsG0180001868.01.T01:CDS
TAGGTACTTATTATGGGCAA+TGG 0.500219 1:-28413048 MsG0180001868.01.T01:CDS
AAAACATTTCTTCGGTCTGA+AGG 0.500891 1:-28413661 MsG0180001868.01.T01:CDS
TATGGGCAATGGAGTGCGGT+GGG 0.503029 1:-28413037 MsG0180001868.01.T01:CDS
GACGTCTGCAACGGATTACT+CGG 0.505173 1:-28412920 MsG0180001868.01.T01:CDS
GTCGGTCACGTTCCAGTGAC+CGG 0.510750 1:+28412940 None:intergenic
TTCGGGAAAAGAATTCTCTC+CGG 0.517363 1:-28412959 MsG0180001868.01.T01:CDS
TTGAAGGTCCGCGAATTGGA+CGG 0.518069 1:-28413339 MsG0180001868.01.T01:CDS
CACGGAGGGTGTGGCGCGTG+GGG 0.533453 1:-28412749 MsG0180001868.01.T01:CDS
GGTGTTCCGTTGTAGAACCA+TGG 0.539046 1:-28412874 MsG0180001868.01.T01:CDS
TGGTTCTACAACGGAACACC+CGG 0.540665 1:+28412877 None:intergenic
TGATCGAACCGTCCAATTCG+CGG 0.541228 1:+28413331 None:intergenic
GCTCAATTACACGGAGGGTG+TGG 0.548312 1:-28412758 MsG0180001868.01.T01:CDS
TCGTTCCGCTATAGAGCCGC+TGG 0.549463 1:+28413563 None:intergenic
AGAAGCACTGTGTCCGCGAA+GGG 0.549670 1:+28413291 None:intergenic
GTGTGGTTCAACTAGTTTGG+AGG 0.554896 1:-28417489 MsG0180001868.01.T01:intron
GCGGTGACGACAACGTTAGC+CGG 0.557192 1:-28413007 MsG0180001868.01.T01:CDS
GTGTTCCGTTGTAGAACCAT+GGG 0.568191 1:-28412873 MsG0180001868.01.T01:CDS
GTCCTCGACGCTGCTGCTGG+TGG 0.568629 1:-28413747 MsG0180001868.01.T01:CDS
GTGTAACAAACTCGCGGAGA+AGG 0.568835 1:-28412807 MsG0180001868.01.T01:CDS
GAGAAGCACTGTGTCCGCGA+AGG 0.569753 1:+28413290 None:intergenic
TGAAGGTGTTCCAAAAGCAA+AGG 0.585376 1:+28413698 None:intergenic
GGTGTTGTTCATATGGTTGG+TGG 0.587357 1:-28413388 MsG0180001868.01.T01:CDS
AACGTGACCGACGTCTGCAA+CGG 0.591243 1:-28412929 MsG0180001868.01.T01:CDS
CCACATACTATTGCTGCCCA+TGG 0.592786 1:+28412857 None:intergenic
CCATGGGCAGCAATAGTATG+TGG 0.592800 1:-28412857 MsG0180001868.01.T01:CDS
GAGTGCGGTGGGGAGGACAG+CGG 0.608200 1:-28413026 MsG0180001868.01.T01:CDS
TTATGGGCAATGGAGTGCGG+TGG 0.609738 1:-28413038 MsG0180001868.01.T01:CDS
CGCCACCAGCAGCAGCGTCG+AGG 0.620566 1:+28413745 None:intergenic
AGGACTGAGAATCTTGGTGA+AGG 0.622311 1:+28413210 None:intergenic
AAGCAGCTCAATTACACGGA+GGG 0.634100 1:-28412763 MsG0180001868.01.T01:CDS
ACCAACCATATGAACAACAC+CGG 0.643450 1:+28413390 None:intergenic
TGCTGCCCATGGTTCTACAA+CGG 0.652613 1:+28412868 None:intergenic
TATCACCAGCGGCTCTATAG+CGG 0.653927 1:-28413568 MsG0180001868.01.T01:CDS
GAGTAATCCGTTGCAGACGT+CGG 0.670118 1:+28412922 None:intergenic
ATGGGCAATGGAGTGCGGTG+GGG 0.682220 1:-28413036 MsG0180001868.01.T01:CDS
TTATTATGGGCAATGGAGTG+CGG 0.683210 1:-28413041 MsG0180001868.01.T01:CDS
TTAGAAGCAGCTCAATTACA+CGG 0.685459 1:-28412767 MsG0180001868.01.T01:CDS
GAATCTTGGTGAAGGAACCA+GGG 0.685698 1:+28413218 None:intergenic
AACGTTAGCCGGTTGCACTG+CGG 0.700723 1:-28412996 MsG0180001868.01.T01:CDS
GTCTGCAACGGATTACTCGG+CGG 0.702672 1:-28412917 MsG0180001868.01.T01:CDS
AATCGCGTGTAACAAACTCG+CGG 0.719057 1:-28412813 MsG0180001868.01.T01:CDS
GCAGCTGCTGGTATCACCAG+CGG 0.739034 1:-28413579 MsG0180001868.01.T01:CDS
TTCTACAACGGAACACCCGG+CGG 0.739650 1:+28412880 None:intergenic
ACACGCGATTAAAACAATAG+CGG 0.752803 1:+28412826 None:intergenic
GAAGCAGCTCAATTACACGG+AGG 0.769023 1:-28412764 MsG0180001868.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATTTTTTTTA+CGG + Chr1:28414052-28414071 None:intergenic 0.0%
!! AAATAAACATAAGATAATAT+AGG + Chr1:28414417-28414436 None:intergenic 10.0%
!! TATAATATAAATATGCAAAT+AGG + Chr1:28414251-28414270 None:intergenic 10.0%
!!! TTAATTTTTTATGGAATTTT+AGG - Chr1:28417223-28417242 MsG0180001868.01.T01:intron 10.0%
!! CAATAAAAAAATCTTTGTAT+CGG + Chr1:28416070-28416089 None:intergenic 15.0%
!! TTTATTATACTGTTTAGAAA+AGG + Chr1:28415370-28415389 None:intergenic 15.0%
!!! AATCATTTCACAATTATTTT+AGG - Chr1:28414200-28414219 MsG0180001868.01.T01:intron 15.0%
!!! ACTTGTTAAATTTTAATCTA+TGG - Chr1:28414616-28414635 MsG0180001868.01.T01:intron 15.0%
!!! ATATATTTTTTTTACGGAAT+TGG + Chr1:28414046-28414065 None:intergenic 15.0%
!!! TCTAACATTTTTTTCTATTA+TGG + Chr1:28415862-28415881 None:intergenic 15.0%
!! AAGAAGATTCAAACTATAAT+TGG + Chr1:28413927-28413946 None:intergenic 20.0%
!! AAGTATTAAAGTGAAACATA+CGG + Chr1:28413555-28413574 None:intergenic 20.0%
!! AATTATAGTTTGAATCTTCT+TGG - Chr1:28413926-28413945 MsG0180001868.01.T01:intron 20.0%
!! AGAAGATTCAAACTATAATT+GGG + Chr1:28413926-28413945 None:intergenic 20.0%
!! ATCTCTTTAATGAAAACAAA+TGG + Chr1:28415968-28415987 None:intergenic 20.0%
!! ATTAGTAACCTAATAAATCA+AGG - Chr1:28415061-28415080 MsG0180001868.01.T01:intron 20.0%
!!! AAAAAGAAGTACAATTTGTT+AGG + Chr1:28413645-28413664 None:intergenic 20.0%
!!! AAAAGAAGTACAATTTGTTA+GGG + Chr1:28413644-28413663 None:intergenic 20.0%
!!! AAAATTTTACTAGTACTAAC+AGG - Chr1:28415108-28415127 MsG0180001868.01.T01:intron 20.0%
!!! AATGTTTTCATTCAATCTAA+CGG - Chr1:28415930-28415949 MsG0180001868.01.T01:intron 20.0%
!!! AGATAAAGTTTTTCACTTTT+GGG + Chr1:28414884-28414903 None:intergenic 20.0%
!!! AGTTATTTTCAAAATGTTTG+GGG - Chr1:28413415-28413434 MsG0180001868.01.T01:intron 20.0%
!!! ATCAATTGTTTTTTAACATG+GGG - Chr1:28415905-28415924 MsG0180001868.01.T01:intron 20.0%
!!! ATCTTTTGATCTATATATGT+TGG - Chr1:28412944-28412963 MsG0180001868.01.T01:CDS 20.0%
!!! CAATTTTCTTTTACAATTTC+TGG + Chr1:28414379-28414398 None:intergenic 20.0%
!!! CAGTTATTTTCAAAATGTTT+GGG - Chr1:28413414-28413433 MsG0180001868.01.T01:intron 20.0%
!!! CATCAATTGTTTTTTAACAT+GGG - Chr1:28415904-28415923 MsG0180001868.01.T01:intron 20.0%
!!! GAATTTTAGGTACTTATTAT+GGG - Chr1:28417236-28417255 MsG0180001868.01.T01:intron 20.0%
!!! GTATCTATTTCTTTTGAATT+CGG - Chr1:28413446-28413465 MsG0180001868.01.T01:intron 20.0%
!!! GTTTATTTGTTAAAGTGAAA+AGG - Chr1:28414429-28414448 MsG0180001868.01.T01:intron 20.0%
!!! TATTCATTGAATCTTTTGAT+TGG + Chr1:28414092-28414111 None:intergenic 20.0%
!!! TCAGTTATTTTCAAAATGTT+TGG - Chr1:28413413-28413432 MsG0180001868.01.T01:intron 20.0%
!!! TCATCAATTGTTTTTTAACA+TGG - Chr1:28415903-28415922 MsG0180001868.01.T01:intron 20.0%
!!! TTTATGTTCTTTGAGTTAAA+AGG - Chr1:28412751-28412770 MsG0180001868.01.T01:CDS 20.0%
! AAAAAGAAGTAGCAAATGTT+AGG + Chr1:28416173-28416192 None:intergenic 25.0%
! AAAATGCAATAAGTGAATTG+TGG - Chr1:28415784-28415803 MsG0180001868.01.T01:intron 25.0%
! AACAAAGGAATGACAAAAAT+TGG - Chr1:28415175-28415194 MsG0180001868.01.T01:intron 25.0%
! AATTTGCAACAGATATTTCA+AGG - Chr1:28414169-28414188 MsG0180001868.01.T01:intron 25.0%
! ACAAGAGATTCAAACTATTA+TGG + Chr1:28413893-28413912 None:intergenic 25.0%
! AGTTAACTACCTGAATTATA+AGG + Chr1:28417103-28417122 None:intergenic 25.0%
! ATTTATTCTTCTTTCTCACA+GGG - Chr1:28416770-28416789 MsG0180001868.01.T01:intron 25.0%
! CAAAAGTGAAAAACTTTATC+TGG - Chr1:28414883-28414902 MsG0180001868.01.T01:intron 25.0%
! CAAGAGATTCAAACTATTAT+GGG + Chr1:28413892-28413911 None:intergenic 25.0%
! CCAATATAAACATCACATAT+TGG + Chr1:28415461-28415480 None:intergenic 25.0%
! CCAATATGTGATGTTTATAT+TGG - Chr1:28415458-28415477 MsG0180001868.01.T01:intron 25.0%
! TACTAACTACTTTCATTGTT+TGG - Chr1:28417138-28417157 MsG0180001868.01.T01:intron 25.0%
! TACTCAAAAATCAAAAGAGT+AGG - Chr1:28416142-28416161 MsG0180001868.01.T01:intron 25.0%
! TATTTATTCTTCTTTCTCAC+AGG - Chr1:28416769-28416788 MsG0180001868.01.T01:intron 25.0%
! TTCATTGGAAAACATTTCTT+CGG - Chr1:28416621-28416640 MsG0180001868.01.T01:intron 25.0%
!! CAGATAAAGTTTTTCACTTT+TGG + Chr1:28414885-28414904 None:intergenic 25.0%
!! CTGTAATCAAAATTTTCAGT+CGG + Chr1:28416660-28416679 None:intergenic 25.0%
!! TTTTAACGTGAAGAAAATCT+GGG + Chr1:28413130-28413149 None:intergenic 25.0%
!!! AACCATTTGTTTTTCAATTG+TGG - Chr1:28412779-28412798 MsG0180001868.01.T01:CDS 25.0%
!!! AACCATTTTTGTTCCAAAAA+AGG - Chr1:28414720-28414739 MsG0180001868.01.T01:intron 25.0%
!!! ACAGTTATTTTCTCTATCAA+TGG - Chr1:28416676-28416695 MsG0180001868.01.T01:intron 25.0%
!!! ATAAAGTTTTTCACTTTTGG+GGG + Chr1:28414882-28414901 None:intergenic 25.0%
!!! ATCCTTTTTTGGAACAAAAA+TGG + Chr1:28414725-28414744 None:intergenic 25.0%
!!! CAGTTATTTTCTCTATCAAT+GGG - Chr1:28416677-28416696 MsG0180001868.01.T01:intron 25.0%
!!! CTTTTTTCTCCCTTTAAATA+GGG + Chr1:28415820-28415839 None:intergenic 25.0%
!!! GATAAAGTTTTTCACTTTTG+GGG + Chr1:28414883-28414902 None:intergenic 25.0%
!!! GGAATTTTAGGTACTTATTA+TGG - Chr1:28417235-28417254 MsG0180001868.01.T01:intron 25.0%
!!! TACTCTTTTGATTTTTGAGT+AGG + Chr1:28416143-28416162 None:intergenic 25.0%
!!! TCTTTTTTCTCCCTTTAAAT+AGG + Chr1:28415821-28415840 None:intergenic 25.0%
AAATTATGTAGCAACATGTC+TGG + Chr1:28415590-28415609 None:intergenic 30.0%
AACAAAGAATGCTTCTTTGT+TGG + Chr1:28412893-28412912 None:intergenic 30.0%
AACTTCACAACACAATTTGA+TGG + Chr1:28414969-28414988 None:intergenic 30.0%
AATTATGTAGCAACATGTCT+GGG + Chr1:28415589-28415608 None:intergenic 30.0%
ACCACTTAAATAATCCTCAA+AGG + Chr1:28413600-28413619 None:intergenic 30.0%
ACGATCTTAACCCTATTTAA+AGG - Chr1:28415807-28415826 MsG0180001868.01.T01:intron 30.0%
ACTTCACAACACAATTTGAT+GGG + Chr1:28414968-28414987 None:intergenic 30.0%
AGAATCAAGCTCAAAATTGA+CGG + Chr1:28415540-28415559 None:intergenic 30.0%
AGACATGTTGCTACATAATT+TGG - Chr1:28415589-28415608 MsG0180001868.01.T01:intron 30.0%
ATATGGAAAAGGAAGATCAT+GGG - Chr1:28414751-28414770 MsG0180001868.01.T01:intron 30.0%
ATCTAGATGTAGTATTCTCA+TGG + Chr1:28412926-28412945 None:intergenic 30.0%
ATTATAAGGACTGAGAATCT+TGG + Chr1:28417089-28417108 None:intergenic 30.0%
ATTCAAGTAGCTACAATGTA+TGG - Chr1:28415014-28415033 MsG0180001868.01.T01:intron 30.0%
ATTCTCAGTCCTTATAATTC+AGG - Chr1:28417091-28417110 MsG0180001868.01.T01:intron 30.0%
CAAAAAAGGATCGTCTTATA+TGG - Chr1:28414734-28414753 MsG0180001868.01.T01:intron 30.0%
CAAAGACAATGTTGTATGAT+TGG - Chr1:28415238-28415257 MsG0180001868.01.T01:intron 30.0%
CACCACAATTGAAAAACAAA+TGG + Chr1:28412784-28412803 None:intergenic 30.0%
CCACAAAATTCAACAAAACA+TGG + Chr1:28415145-28415164 None:intergenic 30.0%
CCACTTAAATAATCCTCAAA+GGG + Chr1:28413599-28413618 None:intergenic 30.0%
CGATCTTAACCCTATTTAAA+GGG - Chr1:28415808-28415827 MsG0180001868.01.T01:intron 30.0%
GAATACACAATAGAAGAAAC+CGG - Chr1:28415312-28415331 MsG0180001868.01.T01:intron 30.0%
GACATGTTGCTACATAATTT+GGG - Chr1:28415590-28415609 MsG0180001868.01.T01:intron 30.0%
GACTAAGGCTTAAAGATAAA+GGG - Chr1:28414934-28414953 MsG0180001868.01.T01:intron 30.0%
TAATATACGTTCAAGTATGC+AGG + Chr1:28414643-28414662 None:intergenic 30.0%
TATATGGAAAAGGAAGATCA+TGG - Chr1:28414750-28414769 MsG0180001868.01.T01:intron 30.0%
TCAAAAATTTATTGTCGCGA+TGG - Chr1:28413217-28413236 MsG0180001868.01.T01:CDS 30.0%
TCAAGAAAAGCTTTCCATTT+AGG + Chr1:28417169-28417188 None:intergenic 30.0%
TGCATACTTGAACGTATATT+AGG - Chr1:28414642-28414661 MsG0180001868.01.T01:intron 30.0%
TGTCATGTCCTTGATTTATT+AGG + Chr1:28415072-28415091 None:intergenic 30.0%
TGTTATCATCAAAACTTCAG+AGG - Chr1:28414687-28414706 MsG0180001868.01.T01:intron 30.0%
TTAAAGAAACCAAATGCCTA+GGG + Chr1:28413519-28413538 None:intergenic 30.0%
TTATGTCCTTCAAAGTCTAA+TGG - Chr1:28414482-28414501 MsG0180001868.01.T01:intron 30.0%
TTTAAAGAAACCAAATGCCT+AGG + Chr1:28413520-28413539 None:intergenic 30.0%
TTTCCAATGAAACCATTTGA+AGG + Chr1:28416612-28416631 None:intergenic 30.0%
!! CCATGTTTTGTTGAATTTTG+TGG - Chr1:28415142-28415161 MsG0180001868.01.T01:intron 30.0%
!! CGTGGTCTATTATCATTTTT+AGG - Chr1:28415488-28415507 MsG0180001868.01.T01:intron 30.0%
!! GTTTTAACGTGAAGAAAATC+TGG + Chr1:28413131-28413150 None:intergenic 30.0%
!! TTTGTTTTTCAATTGTGGTG+TGG - Chr1:28412784-28412803 MsG0180001868.01.T01:CDS 30.0%
!!! AGGGTCATTTACTTGTTTTA+TGG - Chr1:28413303-28413322 MsG0180001868.01.T01:CDS 30.0%
!!! CATATAAGACGATCCTTTTT+TGG + Chr1:28414736-28414755 None:intergenic 30.0%
AAAACATTTCTTCGGTCTGA+AGG - Chr1:28416629-28416648 MsG0180001868.01.T01:intron 35.0%
AAATAAGATACGCAACGAAC+TGG + Chr1:28416754-28416773 None:intergenic 35.0%
ACAAGAGAAGCTAAAAGACT+TGG + Chr1:28414568-28414587 None:intergenic 35.0%
ACACCTTCAAATGGTTTCAT+TGG - Chr1:28416606-28416625 MsG0180001868.01.T01:intron 35.0%
ACACGCGATTAAAACAATAG+CGG + Chr1:28417467-28417486 None:intergenic 35.0%
AGATGTAGTATTCTCATGGT+GGG + Chr1:28412922-28412941 None:intergenic 35.0%
AGGATCGTCTTATATGGAAA+AGG - Chr1:28414740-28414759 MsG0180001868.01.T01:intron 35.0%
ATAGTTGTAAGACCTGATGT+TGG + Chr1:28415285-28415304 None:intergenic 35.0%
ATGAGTTCATGAGCTATTGT+TGG - Chr1:28415511-28415530 MsG0180001868.01.T01:intron 35.0%
ATTATGTAGCAACATGTCTG+GGG + Chr1:28415588-28415607 None:intergenic 35.0%
ATTGTTTGGATGCACCTAAA+TGG - Chr1:28417152-28417171 MsG0180001868.01.T01:intron 35.0%
CAAGTTGCATAGAGAAAACA+AGG + Chr1:28416460-28416479 None:intergenic 35.0%
CGACTAAGGCTTAAAGATAA+AGG - Chr1:28414933-28414952 MsG0180001868.01.T01:intron 35.0%
CTACAATGTATGGAGTATGT+AGG - Chr1:28415024-28415043 MsG0180001868.01.T01:intron 35.0%
CTTCACAACACAATTTGATG+GGG + Chr1:28414967-28414986 None:intergenic 35.0%
GAAGATTCAGTTTCTTGAGA+TGG - Chr1:28413019-28413038 MsG0180001868.01.T01:CDS 35.0%
GAATCAAGCTCAAAATTGAC+GGG + Chr1:28415539-28415558 None:intergenic 35.0%
GAGATGAGACATGTACTTTA+TGG - Chr1:28415412-28415431 MsG0180001868.01.T01:intron 35.0%
GGATTATTTAAGTGGTTCGT+CGG - Chr1:28413604-28413623 MsG0180001868.01.T01:CDS 35.0%
GTAAGCTGAGAATAGAAGAT+AGG + Chr1:28416438-28416457 None:intergenic 35.0%
GTGATCGAAAACAAAGGATT+GGG + Chr1:28415217-28415236 None:intergenic 35.0%
GTTGTGAAGTTCAAATGAAG+AGG - Chr1:28414978-28414997 MsG0180001868.01.T01:intron 35.0%
GTTTGAATCTTCTTGGATTG+CGG - Chr1:28413933-28413952 MsG0180001868.01.T01:intron 35.0%
TAGATGTAGTATTCTCATGG+TGG + Chr1:28412923-28412942 None:intergenic 35.0%
TAGGTACTTATTATGGGCAA+TGG - Chr1:28417242-28417261 MsG0180001868.01.T01:intron 35.0%
TATGGAAAAGGAAGATCATG+GGG - Chr1:28414752-28414771 MsG0180001868.01.T01:intron 35.0%
TCAGGTCTTACAACTATGAA+CGG - Chr1:28415288-28415307 MsG0180001868.01.T01:intron 35.0%
TGAAGACCATTAGACTTTGA+AGG + Chr1:28414491-28414510 None:intergenic 35.0%
TGAGTTCATGAGCTATTGTT+GGG - Chr1:28415512-28415531 MsG0180001868.01.T01:intron 35.0%
TGTAATTGAGCTGCTTCTAA+TGG + Chr1:28417523-28417542 None:intergenic 35.0%
TTAGAAACTAGCTGACAATG+AGG + Chr1:28415712-28415731 None:intergenic 35.0%
TTAGAAGCAGCTCAATTACA+CGG - Chr1:28417523-28417542 MsG0180001868.01.T01:CDS 35.0%
TTATGGTAGCCAAAAGTGAA+TGG - Chr1:28415429-28415448 MsG0180001868.01.T01:intron 35.0%
! AGATTGGTTGAATCCAATTC+GGG - Chr1:28413084-28413103 MsG0180001868.01.T01:intron 35.0%
! CAGATTGGTTGAATCCAATT+CGG - Chr1:28413083-28413102 MsG0180001868.01.T01:intron 35.0%
! CCCTTTGAGGATTATTTAAG+TGG - Chr1:28413596-28413615 MsG0180001868.01.T01:CDS 35.0%
! GAGCTTGATTCTAAAAGAGT+TGG - Chr1:28415548-28415567 MsG0180001868.01.T01:intron 35.0%
! GGCATTTGGTTTCTTTAAAC+TGG - Chr1:28413521-28413540 MsG0180001868.01.T01:intron 35.0%
! GTAGCTTTTGCATGCATAAA+CGG + Chr1:28414800-28414819 None:intergenic 35.0%
! TGGACTAAACCATTCACTTT+TGG + Chr1:28415441-28415460 None:intergenic 35.0%
!! CTTGTTTTCTCTATGCAACT+TGG - Chr1:28416458-28416477 MsG0180001868.01.T01:intron 35.0%
!! GTTGAATTTTGTGGAGCATT+TGG - Chr1:28415151-28415170 MsG0180001868.01.T01:intron 35.0%
!!! AAGCGCGTTTTGTTTAATGA+TGG + Chr1:28416227-28416246 None:intergenic 35.0%
AATTTATTGTCGCGATGGTG+CGG - Chr1:28413222-28413241 MsG0180001868.01.T01:CDS 40.0%
ACCAACCATATGAACAACAC+CGG + Chr1:28416903-28416922 None:intergenic 40.0%
AGGTCTTACAACTATGAACG+GGG - Chr1:28415290-28415309 MsG0180001868.01.T01:intron 40.0%
CACTTGAATATTCATGCCTC+CGG + Chr1:28415334-28415353 None:intergenic 40.0%
CAGGTCTTACAACTATGAAC+GGG - Chr1:28415289-28415308 MsG0180001868.01.T01:intron 40.0%
CGAATTGGATTCAACCAATC+TGG + Chr1:28413085-28413104 None:intergenic 40.0%
CGTGATCGAAAACAAAGGAT+TGG + Chr1:28415218-28415237 None:intergenic 40.0%
CTTTGCGTGATCGAAAACAA+AGG + Chr1:28415223-28415242 None:intergenic 40.0%
GAGATAATTCTCGTTCGTCT+TGG - Chr1:28412990-28413009 MsG0180001868.01.T01:CDS 40.0%
GATTCAGTTTCTTGAGATGG+TGG - Chr1:28413022-28413041 MsG0180001868.01.T01:CDS 40.0%
GTTTACCTGTGGTTTCTCAT+TGG - Chr1:28416796-28416815 MsG0180001868.01.T01:intron 40.0%
GTTTATATTGGTGAAGCTCG+TGG - Chr1:28415470-28415489 MsG0180001868.01.T01:intron 40.0%
TACACAATAGAAGAAACCGG+AGG - Chr1:28415315-28415334 MsG0180001868.01.T01:intron 40.0%
TCATTCAATCTAACGGTTGC+TGG - Chr1:28415937-28415956 MsG0180001868.01.T01:intron 40.0%
TCCTTGCACTTAAAAGTGGA+TGG + Chr1:28414829-28414848 None:intergenic 40.0%
TCTTTAAGCCTTAGTCGAGT+CGG + Chr1:28414930-28414949 None:intergenic 40.0%
TGAAGGACATAAGACTCTGA+GGG + Chr1:28414474-28414493 None:intergenic 40.0%
TGTCCAAAGTTGTTCCAGAT+TGG - Chr1:28413068-28413087 MsG0180001868.01.T01:intron 40.0%
TTATTATGGGCAATGGAGTG+CGG - Chr1:28417249-28417268 MsG0180001868.01.T01:intron 40.0%
TTCGGGAAAAGAATTCTCTC+CGG - Chr1:28417331-28417350 MsG0180001868.01.T01:intron 40.0%
TTCTTGGCACTTTCATGCTT+TGG - Chr1:28417029-28417048 MsG0180001868.01.T01:intron 40.0%
TTGAAGGACATAAGACTCTG+AGG + Chr1:28414475-28414494 None:intergenic 40.0%
! AATTTTCCAGATCACATCCC+AGG + Chr1:28414853-28414872 None:intergenic 40.0%
! CAACCAATCTGGAACAACTT+TGG + Chr1:28413074-28413093 None:intergenic 40.0%
! GGCGTTTTCTACTATCTCTT+CGG - Chr1:28416564-28416583 MsG0180001868.01.T01:intron 40.0%
! GTTTTATGGATGCGAGTTGT+GGG - Chr1:28413317-28413336 MsG0180001868.01.T01:CDS 40.0%
! TGGTTGTTGTTGTCTGTGTT+TGG - Chr1:28413258-28413277 MsG0180001868.01.T01:CDS 40.0%
! TGTGGAGCATTTGGAAACAA+AGG - Chr1:28415160-28415179 MsG0180001868.01.T01:intron 40.0%
! TGTTGTCTGTGTTTGGTAAC+AGG - Chr1:28413265-28413284 MsG0180001868.01.T01:CDS 40.0%
! TGTTTGGTAACAGGTTCTCA+AGG - Chr1:28413274-28413293 MsG0180001868.01.T01:CDS 40.0%
! TGTTTTATGGATGCGAGTTG+TGG - Chr1:28413316-28413335 MsG0180001868.01.T01:CDS 40.0%
! TTCGGTTTTGCCTTTGCTTT+TGG - Chr1:28416582-28416601 MsG0180001868.01.T01:intron 40.0%
! TTTGAAATTGACTGCCAGCA+CGG + Chr1:28413358-28413377 None:intergenic 40.0%
! TTTGGAGGTGCATTCTCTTA+TGG - Chr1:28412816-28412835 MsG0180001868.01.T01:CDS 40.0%
!! ACCATCCACTTTTAAGTGCA+AGG - Chr1:28414825-28414844 MsG0180001868.01.T01:intron 40.0%
!! AGATCATGGGGAGTATTATG+TGG - Chr1:28414764-28414783 MsG0180001868.01.T01:intron 40.0%
!! AGTGCTTCTCTTGTTGTTCT+TGG - Chr1:28417013-28417032 MsG0180001868.01.T01:intron 40.0%
!! ATGCTTTGGTTTGGTTGGTA+TGG - Chr1:28417043-28417062 MsG0180001868.01.T01:intron 40.0%
!! ATTGTTTTCCGACTCGACTA+AGG - Chr1:28414919-28414938 MsG0180001868.01.T01:intron 40.0%
!! CTTTCATGCTTTGGTTTGGT+TGG - Chr1:28417038-28417057 MsG0180001868.01.T01:intron 40.0%
!! GATCATGGGGAGTATTATGT+GGG - Chr1:28414765-28414784 MsG0180001868.01.T01:intron 40.0%
!! GTTTGTTGTGATACCCTTTG+AGG - Chr1:28413583-28413602 MsG0180001868.01.T01:CDS 40.0%
!! TGAAGGTGTTCCAAAAGCAA+AGG + Chr1:28416595-28416614 None:intergenic 40.0%
!!! GCTTTTGGAACACCTTCAAA+TGG - Chr1:28416597-28416616 MsG0180001868.01.T01:intron 40.0%
AAAGAATTCTCTCCGGTCAC+TGG - Chr1:28417338-28417357 MsG0180001868.01.T01:intron 45.0%
AACTGAACCAGCACAAAGCA+TGG + Chr1:28416489-28416508 None:intergenic 45.0%
AAGCAGCTCAATTACACGGA+GGG - Chr1:28417527-28417546 MsG0180001868.01.T01:CDS 45.0%
AATCGCGTGTAACAAACTCG+CGG - Chr1:28417477-28417496 MsG0180001868.01.T01:intron 45.0%
AATTGGCACACTCACGGAAT+TGG + Chr1:28414029-28414048 None:intergenic 45.0%
ACAGGTTCTCAAGGCTAGAA+AGG - Chr1:28413283-28413302 MsG0180001868.01.T01:CDS 45.0%
AGAAACCAAATGCCTAGGGA+CGG + Chr1:28413515-28413534 None:intergenic 45.0%
AGAATCTTGGTGAAGGAACC+AGG + Chr1:28417076-28417095 None:intergenic 45.0%
AGGACTGAGAATCTTGGTGA+AGG + Chr1:28417083-28417102 None:intergenic 45.0%
AGGCTCCTTGCACTTAAAAG+TGG + Chr1:28414833-28414852 None:intergenic 45.0%
ATTGGACGGTTCGATCATTC+TGG - Chr1:28416965-28416984 MsG0180001868.01.T01:intron 45.0%
CAGAACCAATGAGAAACCAC+AGG + Chr1:28416804-28416823 None:intergenic 45.0%
CAGGTTCTCAAGGCTAGAAA+GGG - Chr1:28413284-28413303 MsG0180001868.01.T01:CDS 45.0%
CGTTCGTAGCATGATGTTCA+TGG + Chr1:28416524-28416543 None:intergenic 45.0%
CTTATTGAAGGTCCGCGAAT+TGG - Chr1:28416947-28416966 MsG0180001868.01.T01:intron 45.0%
GAATCTTGGTGAAGGAACCA+GGG + Chr1:28417075-28417094 None:intergenic 45.0%
GATGAAATTTGCAGCGGCTT+CGG + Chr1:28416354-28416373 None:intergenic 45.0%
GCTTGCGATACAAGTACGTT+GGG - Chr1:28413985-28414004 MsG0180001868.01.T01:intron 45.0%
GGCACTTTCATGCTTTGGTT+TGG - Chr1:28417034-28417053 MsG0180001868.01.T01:intron 45.0%
GGGTATTCAAACACAGACGT+CGG + Chr1:28413179-28413198 None:intergenic 45.0%
GGTGCAGATGAAATTTGCAG+CGG + Chr1:28416360-28416379 None:intergenic 45.0%
GTGGTGTGGTTCAACTAGTT+TGG - Chr1:28412798-28412817 MsG0180001868.01.T01:CDS 45.0%
GTGTTCCGTTGTAGAACCAT+GGG - Chr1:28417417-28417436 MsG0180001868.01.T01:intron 45.0%
GTTTGACACTGCTGTGAACT+GGG + Chr1:28416381-28416400 None:intergenic 45.0%
TCTTCTTGGATTGCGGCTAT+AGG - Chr1:28413940-28413959 MsG0180001868.01.T01:intron 45.0%
TGCTTGCGATACAAGTACGT+TGG - Chr1:28413984-28414003 MsG0180001868.01.T01:intron 45.0%
TGTTTGACACTGCTGTGAAC+TGG + Chr1:28416382-28416401 None:intergenic 45.0%
TTACGGAATTGGCACACTCA+CGG + Chr1:28414035-28414054 None:intergenic 45.0%
TTGGGAAATTGTTACCGTGC+TGG - Chr1:28413341-28413360 MsG0180001868.01.T01:CDS 45.0%
TTGTAAGACCTGATGTTGGC+CGG + Chr1:28415281-28415300 None:intergenic 45.0%
! GGTTGAATCCAATTCGGGTT+TGG - Chr1:28413089-28413108 MsG0180001868.01.T01:intron 45.0%
! GTGTGGTTCAACTAGTTTGG+AGG - Chr1:28412801-28412820 MsG0180001868.01.T01:CDS 45.0%
! TCACAGGGTTTGTTTACCTG+TGG - Chr1:28416785-28416804 MsG0180001868.01.T01:intron 45.0%
! TCAGTTTCTTGAGATGGTGG+AGG - Chr1:28413025-28413044 MsG0180001868.01.T01:CDS 45.0%
! TTGTATGATTGGCTGACAGC+TGG - Chr1:28415249-28415268 MsG0180001868.01.T01:intron 45.0%
!! ACTTTTAAGTGCAAGGAGCC+TGG - Chr1:28414832-28414851 MsG0180001868.01.T01:intron 45.0%
!! CATATGGTTGGTGGTATTGC+TGG - Chr1:28416911-28416930 MsG0180001868.01.T01:intron 45.0%
!! CTGTGGTTTCTCATTGGTTC+TGG - Chr1:28416802-28416821 MsG0180001868.01.T01:intron 45.0%
!! CTTTGGGGAGCACTTATTGA+AGG - Chr1:28416935-28416954 MsG0180001868.01.T01:intron 45.0%
!! CTTTTAAGTGCAAGGAGCCT+GGG - Chr1:28414833-28414852 MsG0180001868.01.T01:intron 45.0%
!! GGTGTTGTTCATATGGTTGG+TGG - Chr1:28416902-28416921 MsG0180001868.01.T01:intron 45.0%
!! GTTTCTCATTGGTTCTGGTC+CGG - Chr1:28416807-28416826 MsG0180001868.01.T01:intron 45.0%
!! TCCGGTGTTGTTCATATGGT+TGG - Chr1:28416899-28416918 MsG0180001868.01.T01:intron 45.0%
!! TGGTGGTATTGCTGGTCTTT+GGG - Chr1:28416919-28416938 MsG0180001868.01.T01:intron 45.0%
!! TTGGTGGTATTGCTGGTCTT+TGG - Chr1:28416918-28416937 MsG0180001868.01.T01:intron 45.0%
!! ATATAAAAATGAATTTAAAA+AGG + Chr1:28414137-28414156 None:intergenic 5.0%
!! CATAAAAAATTAAATTTAAA+AGG + Chr1:28417216-28417235 None:intergenic 5.0%
!!! ATAATTTTATTTTACTTTTT+AGG + Chr1:28413688-28413707 None:intergenic 5.0%
!!! CTTTTAAATTTAATTTTTTA+TGG - Chr1:28417214-28417233 MsG0180001868.01.T01:intron 5.0%
ACTTTGGACACCACCACAAG+CGG + Chr1:28413058-28413077 None:intergenic 50.0%
AGACGTCGGTGACAAAGAGA+TGG + Chr1:28413165-28413184 None:intergenic 50.0%
AGAGAGAGCCAAACCCGAAT+TGG + Chr1:28413100-28413119 None:intergenic 50.0%
ATGGATGCGAGTTGTGGGTT+TGG - Chr1:28413322-28413341 MsG0180001868.01.T01:CDS 50.0%
CAAACAAAAGGTCCCCGTGT+TGG + Chr1:28416853-28416872 None:intergenic 50.0%
CCACATACTATTGCTGCCCA+TGG + Chr1:28417436-28417455 None:intergenic 50.0%
CCATGGGCAGCAATAGTATG+TGG - Chr1:28417433-28417452 MsG0180001868.01.T01:intron 50.0%
GAAGCAGCTCAATTACACGG+AGG - Chr1:28417526-28417545 MsG0180001868.01.T01:CDS 50.0%
GAGTAATCCGTTGCAGACGT+CGG + Chr1:28417371-28417390 None:intergenic 50.0%
GATAAACCAGACTCGCGAGA+GGG + Chr1:28413199-28413218 None:intergenic 50.0%
GCCAGCGAAATCAATGACTC+CGG + Chr1:28416879-28416898 None:intergenic 50.0%
GGTGTTCCGTTGTAGAACCA+TGG - Chr1:28417416-28417435 MsG0180001868.01.T01:intron 50.0%
GTGTAACAAACTCGCGGAGA+AGG - Chr1:28417483-28417502 MsG0180001868.01.T01:intron 50.0%
TGATAAACCAGACTCGCGAG+AGG + Chr1:28413200-28413219 None:intergenic 50.0%
TGATCGAACCGTCCAATTCG+CGG + Chr1:28416962-28416981 None:intergenic 50.0%
TGGATGCGAGTTGTGGGTTT+GGG - Chr1:28413323-28413342 MsG0180001868.01.T01:CDS 50.0%
TGTATCCGTCCCTAGGCATT+TGG - Chr1:28413507-28413526 MsG0180001868.01.T01:intron 50.0%
TTGAAGGTCCGCGAATTGGA+CGG - Chr1:28416951-28416970 MsG0180001868.01.T01:intron 50.0%
TTGGATGTGTATCCGTCCCT+AGG - Chr1:28413500-28413519 MsG0180001868.01.T01:intron 50.0%
! AGCTGCGAAACAGAGCATTC+CGG + Chr1:28416299-28416318 None:intergenic 50.0%
! CAACACGGGGACCTTTTGTT+TGG - Chr1:28416851-28416870 MsG0180001868.01.T01:intron 50.0%
! GACATGTTTGGTGGGTAGGT+GGG + Chr1:28416272-28416291 None:intergenic 50.0%
! GGACATAAGACTCTGAGGGA+TGG + Chr1:28414470-28414489 None:intergenic 50.0%
! GGTTGGTATGGTTTCAACCC+TGG - Chr1:28417055-28417074 MsG0180001868.01.T01:intron 50.0%
! GGTTTTGCCATGCTTTGTGC+TGG - Chr1:28416479-28416498 MsG0180001868.01.T01:intron 50.0%
! TGACTCCGGTGCCAAACAAA+AGG + Chr1:28416865-28416884 None:intergenic 50.0%
! TGCTGCCCATGGTTCTACAA+CGG + Chr1:28417425-28417444 None:intergenic 50.0%
! TGGTTCTACAACGGAACACC+CGG + Chr1:28417416-28417435 None:intergenic 50.0%
!! ACCGGAGTCATTGATTTCGC+TGG - Chr1:28416875-28416894 MsG0180001868.01.T01:intron 50.0%
!! GACGTCTGCAACGGATTACT+CGG - Chr1:28417370-28417389 MsG0180001868.01.T01:intron 50.0%
!! GCTTTTGCTATAGCAGCTGC+TGG - Chr1:28416699-28416718 MsG0180001868.01.T01:intron 50.0%
!! GGTGGTATTGCTGGTCTTTG+GGG - Chr1:28416920-28416939 MsG0180001868.01.T01:intron 50.0%
!! GTCATTGATTTCGCTGGCTC+CGG - Chr1:28416881-28416900 MsG0180001868.01.T01:intron 50.0%
!! TCGGTTTTGTGCCTTGCGTT+GGG - Chr1:28413465-28413484 MsG0180001868.01.T01:intron 50.0%
!! TGGCTCCGGTGTTGTTCATA+TGG - Chr1:28416895-28416914 MsG0180001868.01.T01:intron 50.0%
!! TTCGGTTTTGTGCCTTGCGT+TGG - Chr1:28413464-28413483 MsG0180001868.01.T01:intron 50.0%
AACGTGACCGACGTCTGCAA+CGG - Chr1:28417361-28417380 MsG0180001868.01.T01:intron 55.0%
AACGTTAGCCGGTTGCACTG+CGG - Chr1:28417294-28417313 MsG0180001868.01.T01:intron 55.0%
AAGGAGCCTGGGATGTGATC+TGG - Chr1:28414844-28414863 MsG0180001868.01.T01:intron 55.0%
CATTCCGGCAGCGACATGTT+TGG + Chr1:28416284-28416303 None:intergenic 55.0%
CGTTGGGTTCGCTAGGCAAT+TGG - Chr1:28413481-28413500 MsG0180001868.01.T01:intron 55.0%
GCTCAATTACACGGAGGGTG+TGG - Chr1:28417532-28417551 MsG0180001868.01.T01:CDS 55.0%
GGCAAAATCCGGCCAACATC+AGG - Chr1:28415270-28415289 MsG0180001868.01.T01:intron 55.0%
GGCTGACAGCTGGCAAAATC+CGG - Chr1:28415259-28415278 MsG0180001868.01.T01:intron 55.0%
TATGGGCAATGGAGTGCGGT+GGG - Chr1:28417253-28417272 MsG0180001868.01.T01:intron 55.0%
TGAATACCCTCTCGCGAGTC+TGG - Chr1:28413190-28413209 MsG0180001868.01.T01:intron 55.0%
TGGCACACTCACGGAATTGG+TGG + Chr1:28414026-28414045 None:intergenic 55.0%
TTATGGGCAATGGAGTGCGG+TGG - Chr1:28417252-28417271 MsG0180001868.01.T01:intron 55.0%
TTCTACAACGGAACACCCGG+CGG + Chr1:28417413-28417432 None:intergenic 55.0%
! CAGCGACATGTTTGGTGGGT+AGG + Chr1:28416276-28416295 None:intergenic 55.0%
! CGACATGTTTGGTGGGTAGG+TGG + Chr1:28416273-28416292 None:intergenic 55.0%
! CTCACGGAATTGGTGGTCTC+TGG + Chr1:28414019-28414038 None:intergenic 55.0%
! GGTTTTGCTGCGATAACCGC+CGG - Chr1:28417394-28417413 MsG0180001868.01.T01:intron 55.0%
! GTTCTGGTCCGGTGATGGTT+GGG - Chr1:28416818-28416837 MsG0180001868.01.T01:intron 55.0%
! GTTTTGCTGCGATAACCGCC+GGG - Chr1:28417395-28417414 MsG0180001868.01.T01:intron 55.0%
!! AGAAGCACTGTGTCCGCGAA+GGG + Chr1:28417002-28417021 None:intergenic 55.0%
!! CATTGGTTCTGGTCCGGTGA+TGG - Chr1:28416813-28416832 MsG0180001868.01.T01:intron 55.0%
!! GGGGACCTTTTGTTTGGCAC+CGG - Chr1:28416857-28416876 MsG0180001868.01.T01:intron 55.0%
!! GTCTGCAACGGATTACTCGG+CGG - Chr1:28417373-28417392 MsG0180001868.01.T01:intron 55.0%
!! TTGGGCTAGCGCAACCAACA+CGG - Chr1:28416836-28416855 MsG0180001868.01.T01:intron 55.0%
ATGGGCAATGGAGTGCGGTG+GGG - Chr1:28417254-28417273 MsG0180001868.01.T01:intron 60.0%
ATTTGCAGCGGCTTCGGCGT+TGG + Chr1:28416348-28416367 None:intergenic 60.0%
CCCACCAAACATGTCGCTGC+CGG - Chr1:28416277-28416296 MsG0180001868.01.T01:intron 60.0%
CCGGCAGCGACATGTTTGGT+GGG + Chr1:28416280-28416299 None:intergenic 60.0%
GCAGCTGCTGGTATCACCAG+CGG - Chr1:28416711-28416730 MsG0180001868.01.T01:intron 60.0%
GCGGTGACGACAACGTTAGC+CGG - Chr1:28417283-28417302 MsG0180001868.01.T01:intron 60.0%
GGTGCGGTGACTTCTTTGCG+TGG - Chr1:28413238-28413257 MsG0180001868.01.T01:CDS 60.0%
GTCGGTCACGTTCCAGTGAC+CGG + Chr1:28417353-28417372 None:intergenic 60.0%
TCCGGCAGCGACATGTTTGG+TGG + Chr1:28416281-28416300 None:intergenic 60.0%
TCGCAGCTCGCGCAGTTCAT+CGG - Chr1:28416311-28416330 MsG0180001868.01.T01:intron 60.0%
TGCCTAGCGAACCCAACGCA+AGG + Chr1:28413479-28413498 None:intergenic 60.0%
TGCCTTGCGTTGGGTTCGCT+AGG - Chr1:28413474-28413493 MsG0180001868.01.T01:intron 60.0%
TGCGCTAGCCCAACCATCAC+CGG + Chr1:28416829-28416848 None:intergenic 60.0%
! CGGCGCTAACGACGCTTTTC+GGG - Chr1:28417314-28417333 MsG0180001868.01.T01:intron 60.0%
! GCGGCGCTAACGACGCTTTT+CGG - Chr1:28417313-28417332 MsG0180001868.01.T01:intron 60.0%
! GGTTCTGGTCCGGTGATGGT+TGG - Chr1:28416817-28416836 MsG0180001868.01.T01:intron 60.0%
!! GAGAAGCACTGTGTCCGCGA+AGG + Chr1:28417003-28417022 None:intergenic 60.0%
!! TGGGCTAGCGCAACCAACAC+GGG - Chr1:28416837-28416856 MsG0180001868.01.T01:intron 60.0%
AACGTCCTCGACGCTGCTGC+TGG - Chr1:28416540-28416559 MsG0180001868.01.T01:intron 65.0%
AGGTGTGTCGCCGCTTGTGG+TGG - Chr1:28413045-28413064 MsG0180001868.01.T01:CDS 65.0%
CGTTAGCGCCGCAGTGCAAC+CGG + Chr1:28417305-28417324 None:intergenic 65.0%
! GGGCTAGCGCAACCAACACG+GGG - Chr1:28416838-28416857 MsG0180001868.01.T01:intron 65.0%
! TGGAGGTGTGTCGCCGCTTG+TGG - Chr1:28413042-28413061 MsG0180001868.01.T01:CDS 65.0%
!! CTTCGGCGTTGGTGGCGTTG+GGG + Chr1:28416337-28416356 None:intergenic 65.0%
!! GCTTCGGCGTTGGTGGCGTT+GGG + Chr1:28416338-28416357 None:intergenic 65.0%
GAGTGCGGTGGGGAGGACAG+CGG - Chr1:28417264-28417283 MsG0180001868.01.T01:intron 70.0%
GGCAATGGAGTGCGGTGGGG+AGG - Chr1:28417257-28417276 MsG0180001868.01.T01:intron 70.0%
GGTCGAGCTGTCGCCCTTCG+CGG - Chr1:28416986-28417005 MsG0180001868.01.T01:intron 70.0%
GTCCTCGACGCTGCTGCTGG+TGG - Chr1:28416543-28416562 MsG0180001868.01.T01:intron 70.0%
! ACACGGAGGGTGTGGCGCGT+GGG - Chr1:28417540-28417559 MsG0180001868.01.T01:CDS 70.0%
! TACACGGAGGGTGTGGCGCG+TGG - Chr1:28417539-28417558 MsG0180001868.01.T01:CDS 70.0%
! TGCAGCGGCTTCGGCGTTGG+TGG + Chr1:28416345-28416364 None:intergenic 70.0%
!! GGCTTCGGCGTTGGTGGCGT+TGG + Chr1:28416339-28416358 None:intergenic 70.0%
CGCCACCAGCAGCAGCGTCG+AGG + Chr1:28416548-28416567 None:intergenic 75.0%
! CACGGAGGGTGTGGCGCGTG+GGG - Chr1:28417541-28417560 MsG0180001868.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 28412745 28417567 28412745 ID=MsG0180001868.01;Name=MsG0180001868.01
Chr1 mRNA 28412745 28417567 28412745 ID=MsG0180001868.01.T01;Parent=MsG0180001868.01;Name=MsG0180001868.01.T01;_AED=0.40;_eAED=0.42;_QI=0|0.33|0.25|1|0.66|0.75|4|0|292
Chr1 exon 28412745 28413067 28412745 ID=MsG0180001868.01.T01:exon:18805;Parent=MsG0180001868.01.T01
Chr1 exon 28413200 28413430 28413200 ID=MsG0180001868.01.T01:exon:18804;Parent=MsG0180001868.01.T01
Chr1 exon 28413559 28413805 28413559 ID=MsG0180001868.01.T01:exon:18803;Parent=MsG0180001868.01.T01
Chr1 exon 28417490 28417567 28417490 ID=MsG0180001868.01.T01:exon:18802;Parent=MsG0180001868.01.T01
Chr1 CDS 28417490 28417567 28417490 ID=MsG0180001868.01.T01:cds;Parent=MsG0180001868.01.T01
Chr1 CDS 28413559 28413805 28413559 ID=MsG0180001868.01.T01:cds;Parent=MsG0180001868.01.T01
Chr1 CDS 28413200 28413430 28413200 ID=MsG0180001868.01.T01:cds;Parent=MsG0180001868.01.T01
Chr1 CDS 28412745 28413067 28412745 ID=MsG0180001868.01.T01:cds;Parent=MsG0180001868.01.T01
Gene Sequence

>MsG0180001868.01.T01

ATGTGCTTTATGTTCTTTGAGTTAAAAGGATATCAACCATTTGTTTTTCAATTGTGGTGTGGTTCAACTAGTTTGGAGTTCGTGCTAAAACACCATGAACATCATGCTACGAACGTCCTCGACGCTGCTGCTGGTGGCGTTTTCTACTATCTCTTCGGTTTTGCCTTTGCTTTTGGAACACCTTCAAATGGTTTCATTGGAAAACATTTCTTCGGTCTGAAGGATGTTCCGACTGAAAATTTTGATTACAGTTATTTTCTCTATCAATGGGCTTTTGCTATAGCAGCTGCTGGTATCACCAGCGGCTCTATAGCGGAACGAACCATCATTGATTTCGCTGGCTCCGGTGTTGTTCATATGGTTGGTGGTATTGCTGGTCTTTGGGGAGCACTTATTGAAGGTCCGCGAATTGGACGGTTCGATCATTCTGGTCGAGCTGTCGCCCTTCGCGGACACAGTGCTTCTCTTGTTGTTCTTGGCACTTTCATGCTTTGGTTTGGTTGGTATGGTTTCAACCCTGGTTCCTTCACCAAGATTCTCAGTCCTTATAATTCAGGTACTTATTATGGGCAATGGAGTGCGGTGGGGAGGACAGCGGTGACGACAACGTTAGCCGGTTGCACTGCGGCGCTAACGACGCTTTTCGGGAAAAGAATTCTCTCCGGTCACTGGAACGTGACCGACGTCTGCAACGGATTACTCGGCGGTTTTGCTGCGATAACCGCCGGGTGTTCCGTTGTAGAACCATGGGCAGCAATAGTATGTGGCTTCATCGCCGCTATTGTTTTAATCGCGTGTAACAAACTCGCGGAGAAGGTGCGTTACGATGATCCATTAGAAGCAGCTCAATTACACGGAGGGTGTGGCGCGTGGGGATAA
Protein sequence

>MsG0180001868.01.T01

MCFMFFELKGYQPFVFQLWCGSTSLEFVLKHHEHHATNVLDAAAGGVFYYLFGFAFAFGTPSNGFIGKHFFGLKDVPTENFDYSYFLYQWAFAIAAAGITSGSIAERTIIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSPYNSGTYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIAAIVLIACNKLAEKVRYDDPLEAAQLHGGCGAWG*