Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002180.01.T01 | RHN78877.1 | 90.404 | 198 | 17 | 1 | 1 | 196 | 1 | 198 | 5.72E-109 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002180.01.T01 | Q9ZWS9 | 59.901 | 202 | 60 | 5 | 4 | 188 | 29 | 226 | 7.24E-72 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002180.01.T01 | A0A396JVZ4 | 90.404 | 198 | 17 | 1 | 1 | 196 | 1 | 198 | 2.73e-109 | 320 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180002180.01.T01 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0680030351.01 | MsG0180002180.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002180.01.T01 | MTR_1g049100 | 90.404 | 198 | 16 | 2 | 1 | 196 | 1 | 197 | 1.33e-110 | 314 |
| MsG0180002180.01.T01 | MTR_5g036480 | 67.932 | 237 | 35 | 4 | 1 | 196 | 1 | 237 | 3.11e-90 | 264 |
| MsG0180002180.01.T01 | MTR_4g106590 | 59.669 | 181 | 66 | 3 | 3 | 179 | 21 | 198 | 1.20e-62 | 193 |
| MsG0180002180.01.T01 | MTR_3g078613 | 61.006 | 159 | 56 | 2 | 7 | 162 | 22 | 177 | 1.33e-60 | 187 |
| MsG0180002180.01.T01 | MTR_3g078613 | 60.625 | 160 | 56 | 3 | 7 | 162 | 22 | 178 | 8.93e-59 | 183 |
| MsG0180002180.01.T01 | MTR_7g490310 | 51.813 | 193 | 78 | 3 | 7 | 184 | 8 | 200 | 2.28e-56 | 178 |
| MsG0180002180.01.T01 | MTR_8g038620 | 59.155 | 142 | 53 | 2 | 7 | 143 | 8 | 149 | 8.91e-51 | 162 |
| MsG0180002180.01.T01 | MTR_3g093860 | 58.696 | 138 | 50 | 3 | 4 | 138 | 14 | 147 | 1.29e-49 | 158 |
| MsG0180002180.01.T01 | MTR_3g015490 | 52.903 | 155 | 61 | 3 | 7 | 152 | 3 | 154 | 1.09e-45 | 149 |
| MsG0180002180.01.T01 | MTR_3g088630 | 50.676 | 148 | 57 | 3 | 6 | 138 | 20 | 166 | 1.09e-42 | 143 |
| MsG0180002180.01.T01 | MTR_6g007460 | 41.622 | 185 | 52 | 4 | 7 | 138 | 10 | 191 | 2.83e-35 | 123 |
| MsG0180002180.01.T01 | MTR_4g061360 | 35.075 | 134 | 75 | 2 | 8 | 141 | 89 | 210 | 2.24e-17 | 79.7 |
| MsG0180002180.01.T01 | MTR_3g092780 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 5.72e-17 | 78.6 |
| MsG0180002180.01.T01 | MTR_3g092780 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 6.70e-17 | 78.6 |
| MsG0180002180.01.T01 | MTR_3g092780 | 29.730 | 148 | 88 | 2 | 8 | 151 | 56 | 191 | 1.11e-16 | 77.8 |
| MsG0180002180.01.T01 | MTR_3g092780 | 29.730 | 148 | 88 | 2 | 8 | 151 | 56 | 191 | 1.17e-16 | 77.8 |
| MsG0180002180.01.T01 | MTR_7g118260 | 31.757 | 148 | 87 | 3 | 14 | 161 | 22 | 155 | 6.54e-16 | 75.5 |
| MsG0180002180.01.T01 | MTR_4g051330 | 52.239 | 67 | 29 | 1 | 89 | 152 | 77 | 143 | 6.76e-15 | 69.3 |
| MsG0180002180.01.T01 | MTR_7g118260 | 32.308 | 130 | 74 | 3 | 14 | 143 | 22 | 137 | 2.13e-14 | 71.2 |
| MsG0180002180.01.T01 | MTR_8g024260 | 30.882 | 136 | 82 | 1 | 8 | 143 | 36 | 159 | 5.27e-14 | 70.1 |
| MsG0180002180.01.T01 | MTR_1g067110 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 2.42e-13 | 68.2 |
| MsG0180002180.01.T01 | MTR_1g067110 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 2.92e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002180.01.T01 | AT1G59940 | 59.901 | 202 | 60 | 5 | 4 | 188 | 29 | 226 | 7.38e-73 | 220 |
| MsG0180002180.01.T01 | AT1G59940 | 59.901 | 202 | 60 | 5 | 4 | 188 | 121 | 318 | 1.85e-71 | 219 |
| MsG0180002180.01.T01 | AT1G10470 | 55.752 | 226 | 57 | 6 | 6 | 192 | 18 | 239 | 5.01e-70 | 213 |
| MsG0180002180.01.T01 | AT1G10470 | 55.752 | 226 | 57 | 6 | 6 | 192 | 32 | 253 | 1.11e-69 | 213 |
| MsG0180002180.01.T01 | AT3G48100 | 65.563 | 151 | 50 | 1 | 8 | 158 | 25 | 173 | 1.15e-63 | 195 |
| MsG0180002180.01.T01 | AT5G62920 | 72.656 | 128 | 32 | 1 | 8 | 135 | 25 | 149 | 4.41e-61 | 188 |
| MsG0180002180.01.T01 | AT1G74890 | 71.318 | 129 | 34 | 1 | 7 | 135 | 17 | 142 | 3.67e-59 | 184 |
| MsG0180002180.01.T01 | AT1G19050 | 65.441 | 136 | 44 | 1 | 7 | 142 | 23 | 155 | 2.50e-58 | 182 |
| MsG0180002180.01.T01 | AT2G40670 | 59.259 | 135 | 55 | 0 | 4 | 138 | 25 | 159 | 1.76e-54 | 171 |
| MsG0180002180.01.T01 | AT3G57040 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 2.65e-53 | 170 |
| MsG0180002180.01.T01 | AT3G57040 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 2.65e-53 | 170 |
| MsG0180002180.01.T01 | AT3G56380 | 61.194 | 134 | 48 | 2 | 6 | 138 | 18 | 148 | 2.67e-53 | 167 |
| MsG0180002180.01.T01 | AT2G41310 | 59.441 | 143 | 52 | 2 | 1 | 138 | 3 | 144 | 6.57e-53 | 169 |
| MsG0180002180.01.T01 | AT2G40670 | 58.824 | 136 | 55 | 1 | 4 | 138 | 25 | 160 | 9.09e-53 | 167 |
| MsG0180002180.01.T01 | AT3G56380 | 60.741 | 135 | 48 | 3 | 6 | 138 | 18 | 149 | 1.77e-51 | 163 |
| MsG0180002180.01.T01 | AT1G10470 | 56.044 | 91 | 30 | 6 | 70 | 155 | 17 | 102 | 2.02e-23 | 92.4 |
| MsG0180002180.01.T01 | AT2G46790 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 2.46e-15 | 73.9 |
| MsG0180002180.01.T01 | AT5G24470 | 30.216 | 139 | 83 | 3 | 8 | 146 | 52 | 176 | 2.54e-15 | 73.9 |
| MsG0180002180.01.T01 | AT2G46790 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 3.36e-15 | 73.6 |
| MsG0180002180.01.T01 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.14e-14 | 70.9 |
| MsG0180002180.01.T01 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.14e-14 | 70.9 |
| MsG0180002180.01.T01 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.14e-14 | 70.9 |
| MsG0180002180.01.T01 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.27e-14 | 70.5 |
| MsG0180002180.01.T01 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.42e-14 | 70.5 |
| MsG0180002180.01.T01 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.42e-14 | 70.5 |
| MsG0180002180.01.T01 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.42e-14 | 70.5 |
| MsG0180002180.01.T01 | AT2G07440 | 60.000 | 50 | 20 | 0 | 89 | 138 | 9 | 58 | 2.13e-13 | 64.7 |
| MsG0180002180.01.T01 | AT5G02810 | 28.358 | 134 | 84 | 1 | 8 | 141 | 78 | 199 | 1.09e-12 | 66.2 |
Find 38 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGATTACATGCTTCTTC+TGG | 0.290924 | 1:+34335185 | None:intergenic |
| ATTGAAAATATTCAGATGTT+TGG | 0.307010 | 1:-34335321 | MsG0180002180.01.T01:intron |
| AACTCATAACCAGTCATTTC+TGG | 0.328147 | 1:+34336057 | None:intergenic |
| TTTGTTGCCTTAGCCTTTGA+AGG | 0.366124 | 1:-34336109 | MsG0180002180.01.T01:intron |
| CTCAAAATTTCTGCTTGTAA+AGG | 0.386939 | 1:-34336480 | MsG0180002180.01.T01:intron |
| TTCGGAAGAGGTTCATGTAT+TGG | 0.417794 | 1:-34336547 | MsG0180002180.01.T01:CDS |
| AGAAGTGATGGAGACAAATT+CGG | 0.432688 | 1:-34336565 | None:intergenic |
| TTAGTTACTGCTGTGGATAG+TGG | 0.438893 | 1:-34336288 | MsG0180002180.01.T01:intron |
| TTCACATCACATAACTTCAC+TGG | 0.475573 | 1:+34335269 | None:intergenic |
| ATAACAGTACCTGTCTATGC+GGG | 0.487586 | 1:+34335849 | None:intergenic |
| TCAGAAGACATAATCACTAC+TGG | 0.489512 | 1:+34335883 | None:intergenic |
| ATGTGAAGGTGATGATGAAA+TGG | 0.496627 | 1:+34335148 | None:intergenic |
| ATATTCTGCCCCGCATAGAC+AGG | 0.510615 | 1:-34335858 | MsG0180002180.01.T01:intron |
| ATATTCAGATGTTTGGAAGA+AGG | 0.511460 | 1:-34335314 | MsG0180002180.01.T01:intron |
| TATTGCATGCCAGAAATGAC+TGG | 0.520879 | 1:-34336066 | MsG0180002180.01.T01:CDS |
| TTGATCGGAAAGTTATTGAA+AGG | 0.524082 | 1:-34336506 | MsG0180002180.01.T01:CDS |
| ATAACAAGATCCACCTTCAA+AGG | 0.539532 | 1:+34336096 | None:intergenic |
| GTTGCCTTAGCCTTTGAAGG+TGG | 0.539999 | 1:-34336106 | MsG0180002180.01.T01:intron |
| TGCTTGATTCTCCAATCAGA+CGG | 0.554606 | 1:-34335097 | MsG0180002180.01.T01:CDS |
| TACATGACAACAAGGGAGGT+TGG | 0.562595 | 1:-34335233 | MsG0180002180.01.T01:CDS |
| AGCACACTGGATGCAGACAA+TGG | 0.577593 | 1:+34335116 | None:intergenic |
| GATGGAGACAAATTCGGAAG+AGG | 0.584900 | 1:-34336559 | MsG0180002180.01.T01:CDS |
| ACAACAAGGGAGGTTGGAGT+AGG | 0.598300 | 1:-34335227 | MsG0180002180.01.T01:CDS |
| ATGTTTGGAAGAAGGTGCAA+AGG | 0.598645 | 1:-34335306 | MsG0180002180.01.T01:CDS |
| AGAGAGAAGTCTGAATCTGA+TGG | 0.604808 | 1:-34336228 | MsG0180002180.01.T01:CDS |
| GTGAACTTTAGTTACTGCTG+TGG | 0.606977 | 1:-34336295 | MsG0180002180.01.T01:intron |
| TTGATGATAGTCTCATTGAT+CGG | 0.612021 | 1:-34336521 | MsG0180002180.01.T01:CDS |
| TGAAGGGTTACATGACAACA+AGG | 0.633631 | 1:-34335241 | MsG0180002180.01.T01:CDS |
| GATTGGAGAATCAAGCACAC+TGG | 0.650465 | 1:+34335103 | None:intergenic |
| ATGTGATGTGAAACGACTGA+AGG | 0.663812 | 1:-34335258 | MsG0180002180.01.T01:CDS |
| TGTGATGTGAAACGACTGAA+GGG | 0.670059 | 1:-34335257 | MsG0180002180.01.T01:CDS |
| TATAACAGTACCTGTCTATG+CGG | 0.670864 | 1:+34335848 | None:intergenic |
| AATGGAGATGATGAATGTGA+AGG | 0.695750 | 1:+34335134 | None:intergenic |
| TAACAGTACCTGTCTATGCG+GGG | 0.697429 | 1:+34335850 | None:intergenic |
| GGTGATGATGAAATGGACGG+TGG | 0.704627 | 1:+34335155 | None:intergenic |
| GGGTTACATGACAACAAGGG+AGG | 0.715675 | 1:-34335237 | MsG0180002180.01.T01:CDS |
| GAAGGTGATGATGAAATGGA+CGG | 0.719690 | 1:+34335152 | None:intergenic |
| GAAGGGTTACATGACAACAA+GGG | 0.758159 | 1:-34335240 | MsG0180002180.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGTAATGATTTTTTCAA+TGG | + | Chr1:34335638-34335657 | None:intergenic | 15.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | - | Chr1:34336310-34336329 | MsG0180002180.01.T01:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | - | Chr1:34335949-34335968 | MsG0180002180.01.T01:intron | 20.0% |
| !!! | ATTTAACTGTCTTTTTTCTT+TGG | + | Chr1:34336105-34336124 | None:intergenic | 20.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | - | Chr1:34335948-34335967 | MsG0180002180.01.T01:intron | 20.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | - | Chr1:34335591-34335610 | MsG0180002180.01.T01:intron | 25.0% |
| !! | GTCATTAAAAAGTATAACCA+TGG | + | Chr1:34336017-34336036 | None:intergenic | 25.0% |
| !! | TTATTGTTATTAGTTACCAC+TGG | - | Chr1:34336248-34336267 | MsG0180002180.01.T01:CDS | 25.0% |
| !! | TTTTCAATTGTAACAAACCA+TGG | - | Chr1:34335997-34336016 | MsG0180002180.01.T01:intron | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | - | Chr1:34335950-34335969 | MsG0180002180.01.T01:intron | 25.0% |
| !!! | GTGTTGATGATTTTTGTTTT+TGG | - | Chr1:34335314-34335333 | MsG0180002180.01.T01:intron | 25.0% |
| ATATTCAGATGTTTGGAAGA+AGG | - | Chr1:34336317-34336336 | MsG0180002180.01.T01:intron | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | + | Chr1:34335705-34335724 | None:intergenic | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | - | Chr1:34335151-34335170 | MsG0180002180.01.T01:CDS | 30.0% | |
| TTGATCGGAAAGTTATTGAA+AGG | - | Chr1:34335125-34335144 | MsG0180002180.01.T01:CDS | 30.0% | |
| ! | ATCATTTTAAACCGTCTGAT+TGG | + | Chr1:34336548-34336567 | None:intergenic | 30.0% |
| ! | TTGATGATAGTCTCATTGAT+CGG | - | Chr1:34335110-34335129 | MsG0180002180.01.T01:CDS | 30.0% |
| AACTCATAACCAGTCATTTC+TGG | + | Chr1:34335577-34335596 | None:intergenic | 35.0% | |
| AACTTCATCACAATTTCCAG+TGG | + | Chr1:34336267-34336286 | None:intergenic | 35.0% | |
| AATGGAGATGATGAATGTGA+AGG | + | Chr1:34336500-34336519 | None:intergenic | 35.0% | |
| ATAACAAGATCCACCTTCAA+AGG | + | Chr1:34335538-34335557 | None:intergenic | 35.0% | |
| TATAACAGTACCTGTCTATG+CGG | + | Chr1:34335786-34335805 | None:intergenic | 35.0% | |
| TCAGAAGACATAATCACTAC+TGG | + | Chr1:34335751-34335770 | None:intergenic | 35.0% | |
| TTCACATCACATAACTTCAC+TGG | + | Chr1:34336365-34336384 | None:intergenic | 35.0% | |
| ! | ATGTGAAGGTGATGATGAAA+TGG | + | Chr1:34336486-34336505 | None:intergenic | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | - | Chr1:34335418-34335437 | MsG0180002180.01.T01:intron | 35.0% |
| !!! | AATCAGAGCACTGCAATTTT+TGG | - | Chr1:34335366-34335385 | MsG0180002180.01.T01:intron | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | - | Chr1:34335367-34335386 | MsG0180002180.01.T01:intron | 35.0% |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | - | Chr1:34335702-34335721 | MsG0180002180.01.T01:intron | 35.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | - | Chr1:34335403-34335422 | MsG0180002180.01.T01:intron | 40.0% | |
| ATAACAGTACCTGTCTATGC+GGG | + | Chr1:34335785-34335804 | None:intergenic | 40.0% | |
| ATGTGATGTGAAACGACTGA+AGG | - | Chr1:34336373-34336392 | MsG0180002180.01.T01:intron | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | - | Chr1:34336391-34336410 | MsG0180002180.01.T01:intron | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | + | Chr1:34336449-34336468 | None:intergenic | 40.0% | |
| GTAAAGGTGAGTTTGTGATC+TGG | - | Chr1:34335167-34335186 | MsG0180002180.01.T01:CDS | 40.0% | |
| GTGAACTTTAGTTACTGCTG+TGG | - | Chr1:34335336-34335355 | MsG0180002180.01.T01:intron | 40.0% | |
| TATTGCATGCCAGAAATGAC+TGG | - | Chr1:34335565-34335584 | MsG0180002180.01.T01:intron | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | - | Chr1:34336390-34336409 | MsG0180002180.01.T01:intron | 40.0% | |
| TGCTTGATTCTCCAATCAGA+CGG | - | Chr1:34336534-34336553 | MsG0180002180.01.T01:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | - | Chr1:34336374-34336393 | MsG0180002180.01.T01:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | - | Chr1:34335343-34335362 | MsG0180002180.01.T01:intron | 40.0% | |
| TTCGGAAGAGGTTCATGTAT+TGG | - | Chr1:34335084-34335103 | MsG0180002180.01.T01:CDS | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | - | Chr1:34336325-34336344 | MsG0180002180.01.T01:intron | 40.0% |
| ! | GAAGGTGATGATGAAATGGA+CGG | + | Chr1:34336482-34336501 | None:intergenic | 40.0% |
| ! | GCAGGAATCGTCAACTTTTA+AGG | - | Chr1:34335720-34335739 | MsG0180002180.01.T01:intron | 40.0% |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | - | Chr1:34335522-34335541 | MsG0180002180.01.T01:intron | 40.0% |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | - | Chr1:34335368-34335387 | MsG0180002180.01.T01:intron | 40.0% |
| AGATCCACCTTCAAAGGCTA+AGG | + | Chr1:34335532-34335551 | None:intergenic | 45.0% | |
| GATTGGAGAATCAAGCACAC+TGG | + | Chr1:34336531-34336550 | None:intergenic | 45.0% | |
| TAACAGTACCTGTCTATGCG+GGG | + | Chr1:34335784-34335803 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | - | Chr1:34336398-34336417 | MsG0180002180.01.T01:intron | 45.0% | |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | - | Chr1:34335372-34335391 | MsG0180002180.01.T01:intron | 45.0% |
| !! | TAATTTATACTTATATATAA+TGG | + | Chr1:34336139-34336158 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | - | Chr1:34335805-34335824 | MsG0180002180.01.T01:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | - | Chr1:34335806-34335825 | MsG0180002180.01.T01:intron | 5.0% |
| ACAACAAGGGAGGTTGGAGT+AGG | - | Chr1:34336404-34336423 | MsG0180002180.01.T01:intron | 50.0% | |
| AGCACACTGGATGCAGACAA+TGG | + | Chr1:34336518-34336537 | None:intergenic | 50.0% | |
| ATATTCTGCCCCGCATAGAC+AGG | - | Chr1:34335773-34335792 | MsG0180002180.01.T01:intron | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | - | Chr1:34336394-34336413 | MsG0180002180.01.T01:intron | 50.0% | |
| ! | GGTGATGATGAAATGGACGG+TGG | + | Chr1:34336479-34336498 | None:intergenic | 50.0% |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | - | Chr1:34335525-34335544 | MsG0180002180.01.T01:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 34335073 | 34336580 | 34335073 | ID=MsG0180002180.01;Name=MsG0180002180.01 |
| Chr1 | mRNA | 34335073 | 34336580 | 34335073 | ID=MsG0180002180.01.T01;Parent=MsG0180002180.01;Name=MsG0180002180.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|5|0|196 |
| Chr1 | exon | 34336481 | 34336580 | 34336481 | ID=MsG0180002180.01.T01:exon:6888;Parent=MsG0180002180.01.T01 |
| Chr1 | exon | 34336221 | 34336306 | 34336221 | ID=MsG0180002180.01.T01:exon:6889;Parent=MsG0180002180.01.T01 |
| Chr1 | exon | 34336041 | 34336118 | 34336041 | ID=MsG0180002180.01.T01:exon:6890;Parent=MsG0180002180.01.T01 |
| Chr1 | exon | 34335859 | 34335929 | 34335859 | ID=MsG0180002180.01.T01:exon:6891;Parent=MsG0180002180.01.T01 |
| Chr1 | exon | 34335073 | 34335328 | 34335073 | ID=MsG0180002180.01.T01:exon:6892;Parent=MsG0180002180.01.T01 |
| Chr1 | CDS | 34336481 | 34336580 | 34336481 | ID=MsG0180002180.01.T01:cds;Parent=MsG0180002180.01.T01 |
| Chr1 | CDS | 34336221 | 34336306 | 34336221 | ID=MsG0180002180.01.T01:cds;Parent=MsG0180002180.01.T01 |
| Chr1 | CDS | 34336041 | 34336118 | 34336041 | ID=MsG0180002180.01.T01:cds;Parent=MsG0180002180.01.T01 |
| Chr1 | CDS | 34335859 | 34335929 | 34335859 | ID=MsG0180002180.01.T01:cds;Parent=MsG0180002180.01.T01 |
| Chr1 | CDS | 34335073 | 34335328 | 34335073 | ID=MsG0180002180.01.T01:cds;Parent=MsG0180002180.01.T01 |
| Gene Sequence |
| Protein sequence |
