AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002461.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002461.01.T01 MTR_1g050510 66.080 398 74 6 36 393 37 413 2.37e-155 444
MsG0180002461.01.T01 MTR_1g050510 65.797 345 74 5 36 357 37 360 6.63e-131 380
MsG0180002461.01.T01 MTR_1g050510 72.800 250 44 4 161 393 40 282 6.96e-105 311
MsG0180002461.01.T01 MTR_0722s0010 77.333 75 0 1 336 393 1 75 5.11e-31 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002461.01.T01 AT3G56720 38.506 348 150 11 82 393 68 387 1.13e-35 135
MsG0180002461.01.T01 AT3G56720 38.218 348 150 11 82 393 68 386 3.88e-35 133
MsG0180002461.01.T01 AT3G56720 33.003 303 150 10 82 360 68 341 1.65e-15 78.2
MsG0180002461.01.T01 AT3G56720 33.333 300 147 10 82 357 68 338 4.89e-15 76.3

Find 0 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTATAAAAAAAATT+AGG - Chr1:38650499-38650518 MsG0180002459.01.T01:intron 0.0%
!!! AATTTTTTTTATAATAAATT+AGG + Chr1:38650499-38650518 MsG0180002461.01.T01:intron 0.0%
!!! ACACTTTTTTTTTTTTTTTT+TGG - Chr1:38650801-38650820 MsG0180002459.01.T01:intron 10.0%
!!! CTTTTTTTTAATGTTTTTTT+AGG + Chr1:38651271-38651290 MsG0180002461.01.T01:intron 10.0%
!!! TTTTTTTAATGTTTTTTTAG+GGG + Chr1:38651273-38651292 MsG0180002461.01.T01:intron 10.0%
!! AATCAAAAAATCTGTTATTA+GGG - Chr1:38651389-38651408 None:intergenic 15.0%
!! ATTCTTAAAGAACAATATAA+AGG - Chr1:38651299-38651318 None:intergenic 15.0%
!! TAATCAAAAAATCTGTTATT+AGG - Chr1:38651390-38651409 None:intergenic 15.0%
!!! AACTTATATGTTTTATCTTT+AGG + Chr1:38651431-38651450 MsG0180002461.01.T01:intron 15.0%
!!! ATTTTTTTAGTTTGCATTTA+AGG + Chr1:38650340-38650359 MsG0180002461.01.T01:intron 15.0%
!!! GATATAATCTGTTATTTATT+TGG + Chr1:38652999-38653018 MsG0180002460.01.T01:intron 15.0%
!!! TTTAACTCTCATTTATTTTT+GGG + Chr1:38650541-38650560 MsG0180002461.01.T01:intron 15.0%
!!! TTTTAACTCTCATTTATTTT+TGG + Chr1:38650540-38650559 MsG0180002461.01.T01:intron 15.0%
!! AAAAGATGTGTATAATCTTT+GGG - Chr1:38653897-38653916 None:intergenic 20.0%
!! AAAATGAAGATGAATAGAAA+AGG - Chr1:38650974-38650993 MsG0180002459.01.T01:intron 20.0%
!! AGAATCAAAAGTTAAAGAAT+TGG - Chr1:38652967-38652986 None:intergenic 20.0%
!! ATACTTATAAGTTAATTCGT+AGG + Chr1:38650222-38650241 MsG0180002461.01.T01:intron 20.0%
!! ATATATTCCAAGTTTCAAAA+TGG - Chr1:38651082-38651101 MsG0180002459.01.T01:intron 20.0%
!! ATGAATAAGTGTTTATAAGT+GGG + Chr1:38651596-38651615 MsG0180002461.01.T01:intron 20.0%
!! ATTCTATATATATATGGAGT+AGG + Chr1:38651801-38651820 MsG0180002461.01.T01:intron 20.0%
!! GAAAAGAAAAAAACCATTTA+TGG - Chr1:38652929-38652948 None:intergenic 20.0%
!! GAAGTTATATATGTTGTAAT+AGG + Chr1:38653918-38653937 MsG0180002460.01.T01:intron 20.0%
!! TGAGCTATTCTATATATATA+TGG + Chr1:38651795-38651814 MsG0180002461.01.T01:intron 20.0%
!! TTCATATATTTCTCCATAAA+TGG + Chr1:38652913-38652932 MsG0180002460.01.T01:intron 20.0%
!! TTCTATATATATATGGAGTA+GGG + Chr1:38651802-38651821 MsG0180002461.01.T01:intron 20.0%
!!! AACGGTGTTTATAAATTTTA+TGG + Chr1:38653815-38653834 MsG0180002460.01.T01:intron 20.0%
!!! AATTCCTAAAAAGCTTTTAT+TGG + Chr1:38652732-38652751 MsG0180002460.01.T01:CDS 20.0%
!!! ACTCTTTTTTGTATAACATT+AGG + Chr1:38653182-38653201 MsG0180002460.01.T01:intron 20.0%
!!! ATTCCTAAAAAGCTTTTATT+GGG + Chr1:38652733-38652752 MsG0180002460.01.T01:CDS 20.0%
!!! TGTATTTTTTCACTTAATCT+AGG + Chr1:38652511-38652530 MsG0180002460.01.T01:intron 20.0%
! AAAAAAAGTCTTAGAAATCG+TGG - Chr1:38651670-38651689 None:intergenic 25.0%
! AATTATCAAAGATACCTCTT+CGG - Chr1:38653126-38653145 None:intergenic 25.0%
! ATGAATAGAAAAGGTGAAAA+GGG - Chr1:38650965-38650984 MsG0180002459.01.T01:intron 25.0%
! ATGAATATAGAAAACATGAG+AGG + Chr1:38652047-38652066 MsG0180002460.01.T01:CDS 25.0%
! ATTACCTTATCTTCTATAAC+GGG + Chr1:38653609-38653628 MsG0180002460.01.T01:intron 25.0%
! ATTGAAGATAAAGAATCTTC+TGG + Chr1:38652425-38652444 MsG0180002460.01.T01:CDS 25.0%
! CATGAATAAGTGTTTATAAG+TGG + Chr1:38651595-38651614 MsG0180002461.01.T01:intron 25.0%
! GAAAAGATGTGTATAATCTT+TGG - Chr1:38653898-38653917 None:intergenic 25.0%
! GATTACCTTATCTTCTATAA+CGG + Chr1:38653608-38653627 MsG0180002460.01.T01:intron 25.0%
! GGAATATATGTTTGTTTACA+GGG + Chr1:38651093-38651112 MsG0180002461.01.T01:intron 25.0%
! TAGTTGTATTGTAGCAAATA+TGG + Chr1:38653266-38653285 MsG0180002460.01.T01:intron 25.0%
! TGAATAAGTGTTTATAAGTG+GGG + Chr1:38651597-38651616 MsG0180002461.01.T01:intron 25.0%
! TGGAATATATGTTTGTTTAC+AGG + Chr1:38651092-38651111 MsG0180002461.01.T01:intron 25.0%
! TTGTAATAGGATAATTAGAG+TGG + Chr1:38653931-38653950 MsG0180002460.01.T01:intron 25.0%
!! AAATTACCGAACAAAGTATT+TGG - Chr1:38651750-38651769 None:intergenic 25.0%
!! ATATGGTCTGTTCAAAATTT+TGG + Chr1:38653283-38653302 MsG0180002460.01.T01:intron 25.0%
!! TAAGGAATTTAAACTTTTGC+AGG + Chr1:38650358-38650377 MsG0180002461.01.T01:intron 25.0%
!! TGGTTGTTTCAACAAATAAA+TGG - Chr1:38651062-38651081 MsG0180002459.01.T01:intron 25.0%
!! TTTTAAACATTTGCAGAATG+TGG + Chr1:38652816-38652835 MsG0180002460.01.T01:intron 25.0%
!!! TTGTTATTGTACCATTTTTC+TGG + Chr1:38654013-38654032 MsG0180002460.01.T01:intron 25.0%
AAAAGAGTTCAGTAAGAACT+CGG - Chr1:38653170-38653189 None:intergenic 30.0%
AAAGATAGAATGAAACCATG+AGG - Chr1:38651255-38651274 None:intergenic 30.0%
AAAGATTCACAAAGAAGTTC+TGG + Chr1:38652287-38652306 MsG0180002460.01.T01:CDS 30.0%
AACTATTCAGTCAATGTAAC+AGG - Chr1:38653851-38653870 None:intergenic 30.0%
AATATCGCACACTTTAAATG+AGG + Chr1:38653632-38653651 MsG0180002460.01.T01:intron 30.0%
AATCTCCTCATGTTATTGTT+CGG - Chr1:38654216-38654235 None:intergenic 30.0%
ACAGTTAACAAGAACTTAGT+AGG + Chr1:38653037-38653056 MsG0180002460.01.T01:intron 30.0%
AGAATAGCTCAGATAAAACT+TGG - Chr1:38651786-38651805 None:intergenic 30.0%
AGAGAAATTCAACAAACTCA+TGG + Chr1:38654157-38654176 MsG0180002460.01.T01:CDS 30.0%
AGGATAATTAGAGTGGTAAA+TGG + Chr1:38653938-38653957 MsG0180002460.01.T01:intron 30.0%
AGTTAACAAGAACTTAGTAG+GGG + Chr1:38653039-38653058 MsG0180002460.01.T01:intron 30.0%
ATAACAAATTCAAAGACCTG+AGG - Chr1:38654000-38654019 None:intergenic 30.0%
ATCCACGTGAAAAATATGAA+AGG + Chr1:38652163-38652182 MsG0180002460.01.T01:intron 30.0%
CAATACTCTTCATTATATGC+AGG + Chr1:38651840-38651859 MsG0180002461.01.T01:intron 30.0%
CAGTTAACAAGAACTTAGTA+GGG + Chr1:38653038-38653057 MsG0180002460.01.T01:intron 30.0%
CATTGAGATTAGTAAGAACA+AGG + Chr1:38652367-38652386 MsG0180002460.01.T01:CDS 30.0%
GAATAAGTGTTTATAAGTGG+GGG + Chr1:38651598-38651617 MsG0180002461.01.T01:intron 30.0%
GAGACAGTAAACAATATCAA+AGG - Chr1:38653785-38653804 None:intergenic 30.0%
GATGAATAGAAAAGGTGAAA+AGG - Chr1:38650966-38650985 MsG0180002459.01.T01:intron 30.0%
GCACAGACATAACAAATTAT+AGG - Chr1:38653550-38653569 None:intergenic 30.0%
GGAAAGAAACAAAAGTTGTT+TGG + Chr1:38652446-38652465 MsG0180002460.01.T01:CDS 30.0%
TACCAAGAATCCAATATGAA+CGG - Chr1:38653245-38653264 None:intergenic 30.0%
TATATATATGGAGTAGGGAT+TGG + Chr1:38651807-38651826 MsG0180002461.01.T01:intron 30.0%
TATGTTTGTTTACAGGGTTA+TGG + Chr1:38651099-38651118 MsG0180002461.01.T01:intron 30.0%
TATTCCCGTTATAGAAGATA+AGG - Chr1:38653616-38653635 None:intergenic 30.0%
TGAATAGAAAAGGTGAAAAG+GGG - Chr1:38650964-38650983 MsG0180002459.01.T01:intron 30.0%
TTAGGATAGAAAATCACTTG+TGG + Chr1:38653512-38653531 MsG0180002460.01.T01:intron 30.0%
TTGCAGGATAGAATTCTATA+AGG + Chr1:38650374-38650393 MsG0180002461.01.T01:intron 30.0%
! AAACTCTAAAAAAGTAGGAG+AGG + Chr1:38652394-38652413 MsG0180002460.01.T01:CDS 30.0%
! AAGTAGCGTTTGAAAACTTT+TGG - Chr1:38650196-38650215 MsG0180002459.01.T01:intron 30.0%
! AATACCATCTTTTCCAGAAT+TGG - Chr1:38652486-38652505 None:intergenic 30.0%
! AGAAAGTTTGTTCATAAAGC+TGG - Chr1:38651362-38651381 None:intergenic 30.0%
! ATAAGGTACTAAACATGATG+TGG + Chr1:38650391-38650410 MsG0180002461.01.T01:intron 30.0%
! ATTTTCTATCCTAATGGTTG+AGG - Chr1:38653506-38653525 None:intergenic 30.0%
! CAAGTGATTTTCTATCCTAA+TGG - Chr1:38653512-38653531 None:intergenic 30.0%
! CATCCCAATAAAAGCTTTTT+AGG - Chr1:38652739-38652758 None:intergenic 30.0%
! TTAGTAATTAGTCGCCTTTT+GGG + Chr1:38651693-38651712 MsG0180002461.01.T01:intron 30.0%
! TTTAGTAATTAGTCGCCTTT+TGG + Chr1:38651692-38651711 MsG0180002461.01.T01:intron 30.0%
!! AAAAAAGTAGGAGAGGTATT+TGG + Chr1:38652401-38652420 MsG0180002460.01.T01:CDS 30.0%
!! AGAGAGTGCACAAATTTTAA+AGG - Chr1:38653425-38653444 None:intergenic 30.0%
!! AGTGCACAAATTTTAAAGGT+TGG - Chr1:38653421-38653440 None:intergenic 30.0%
!!! CTCCTACTTTTTTAGAGTTT+CGG - Chr1:38652394-38652413 None:intergenic 30.0%
!!! GAAACAACCATTTTGAAACT+TGG + Chr1:38651072-38651091 MsG0180002461.01.T01:intron 30.0%
!!! TTTTTTGTCCAGTAGTCTAA+TGG - Chr1:38650706-38650725 MsG0180002459.01.T01:intron 30.0%
AAAGACCTAATCCAACTGTA+CGG - Chr1:38654477-38654496 None:intergenic 35.0%
AAAGTCTTAGAAATCGTGGT+TGG - Chr1:38651666-38651685 None:intergenic 35.0%
AATCTTTGGGCAAAATGAGA+CGG - Chr1:38653884-38653903 None:intergenic 35.0%
ACACATTATGTGTAGAGAAG+TGG - Chr1:38650673-38650692 MsG0180002459.01.T01:intron 35.0%
ACATTATGTGTAGAGAAGTG+GGG - Chr1:38650671-38650690 MsG0180002459.01.T01:intron 35.0%
ACCAAGAATCCAATATGAAC+GGG - Chr1:38653244-38653263 None:intergenic 35.0%
ACTGTCTCGTTACAAGTAAA+CGG + Chr1:38653797-38653816 MsG0180002460.01.T01:intron 35.0%
AGGGAAAAATCAATCAATCG+AGG + Chr1:38650868-38650887 MsG0180002461.01.T01:CDS 35.0%
AGTAAGAACTCGGCAAATAA+GGG - Chr1:38653160-38653179 None:intergenic 35.0%
ATAGAATGAAACCATGAGGT+GGG - Chr1:38651251-38651270 None:intergenic 35.0%
ATGCCATAAAGCCAGAAAAA+TGG - Chr1:38654027-38654046 None:intergenic 35.0%
CAAAGATTACAAGCGTAGTA+TGG + Chr1:38652134-38652153 MsG0180002460.01.T01:intron 35.0%
CACATTATGTGTAGAGAAGT+GGG - Chr1:38650672-38650691 MsG0180002459.01.T01:intron 35.0%
CATTTAACTGAGCTATTCTC+AGG - Chr1:38651496-38651515 None:intergenic 35.0%
CTGAGAATAGCTCAGTTAAA+TGG + Chr1:38651494-38651513 MsG0180002461.01.T01:intron 35.0%
GAATAGAAAAGGTGAAAAGG+GGG - Chr1:38650963-38650982 MsG0180002459.01.T01:intron 35.0%
GGGAAAAATCAATCAATCGA+GGG + Chr1:38650869-38650888 MsG0180002461.01.T01:CDS 35.0%
TAATGTAGATGCTGCAAAAG+TGG + Chr1:38652675-38652694 MsG0180002460.01.T01:CDS 35.0%
TACTAACACATTTGAGTCTG+AGG + Chr1:38654285-38654304 MsG0180002460.01.T01:intron 35.0%
TATTGCCACTATCAAAACAG+TGG - Chr1:38652657-38652676 None:intergenic 35.0%
TCAGACTCAAATGTGTTAGT+AGG - Chr1:38654286-38654305 None:intergenic 35.0%
TTTGGCGACACTTGTAATTA+TGG + Chr1:38653301-38653320 MsG0180002460.01.T01:intron 35.0%
! ACGAGTAAGTTTAGGATTTG+AGG - Chr1:38650937-38650956 MsG0180002459.01.T01:intron 35.0%
! CGAGTAAGTTTAGGATTTGA+GGG - Chr1:38650936-38650955 MsG0180002459.01.T01:intron 35.0%
! GACCGAAACTCTAAAAAAGT+AGG + Chr1:38652389-38652408 MsG0180002460.01.T01:CDS 35.0%
! GACCTTTCATATTTTTCACG+TGG - Chr1:38652168-38652187 None:intergenic 35.0%
! TAATCTCAATGTCGTCCTTT+TGG - Chr1:38652358-38652377 None:intergenic 35.0%
! TACCGAACAAAGTATTTGGT+GGG - Chr1:38651746-38651765 None:intergenic 35.0%
! TACTAGGGATAATTTGTGCA+GGG + Chr1:38650623-38650642 MsG0180002461.01.T01:intron 35.0%
! TTACCGAACAAAGTATTTGG+TGG - Chr1:38651747-38651766 None:intergenic 35.0%
!! AAAGGTCTGATTTTAGAAGC+AGG + Chr1:38652181-38652200 MsG0180002460.01.T01:intron 35.0%
!! ATATTTTGTGTCTTGTTCCC+TGG - Chr1:38651942-38651961 None:intergenic 35.0%
!! CATTAGGAGTACTTTGAGTT+AGG + Chr1:38653198-38653217 MsG0180002460.01.T01:intron 35.0%
!!! ATTTTTCTGGCTTTATGGCA+TGG + Chr1:38654026-38654045 MsG0180002460.01.T01:intron 35.0%
!!! GTACCATTTTTCTGGCTTTA+TGG + Chr1:38654021-38654040 MsG0180002460.01.T01:intron 35.0%
!!! TTTTTCTGGCTTTATGGCAT+GGG + Chr1:38654027-38654046 MsG0180002460.01.T01:intron 35.0%
AAACAAAACGACGAGAGAAG+AGG + Chr1:38650848-38650867 MsG0180002461.01.T01:CDS 40.0%
AAACTTACAGTCTGACCTGA+GGG + Chr1:38653724-38653743 MsG0180002460.01.T01:intron 40.0%
AACAAAACGACGAGAGAAGA+GGG + Chr1:38650849-38650868 MsG0180002461.01.T01:CDS 40.0%
ACAAAATATGCCAGAAGCAG+TGG + Chr1:38651953-38651972 MsG0180002460.01.T01:CDS 40.0%
ACAAATTCAAAGACCTGAGG+TGG - Chr1:38653997-38654016 None:intergenic 40.0%
ACATGTGGAAAATGCATTGC+CGG - Chr1:38654088-38654107 None:intergenic 40.0%
ACCAAAGAAGAACTGTTGTG+GGG + Chr1:38653080-38653099 MsG0180002460.01.T01:intron 40.0%
ACTGAGCTATTCTCAGGAAA+TGG - Chr1:38651490-38651509 None:intergenic 40.0%
AGCTGGTGTCTTTCATGAAT+AGG - Chr1:38651345-38651364 None:intergenic 40.0%
ATCAAAGATACCTCTTCGGT+GGG - Chr1:38653122-38653141 None:intergenic 40.0%
ATGCTATCTCTCAAACGATG+TGG - Chr1:38651578-38651597 None:intergenic 40.0%
ATTGTGCTGAAGCAGATGAA+AGG + Chr1:38652574-38652593 MsG0180002460.01.T01:CDS 40.0%
CAAAACATGCAGTCATGAAG+AGG - Chr1:38653327-38653346 None:intergenic 40.0%
CAAAGAATTTGATTGCTGCC+CGG + Chr1:38654066-38654085 MsG0180002460.01.T01:intron 40.0%
CAATATGAACGGGGAGAAAA+GGG - Chr1:38653234-38653253 None:intergenic 40.0%
CACCCACCAAATACTTTGTT+CGG + Chr1:38651741-38651760 MsG0180002461.01.T01:CDS 40.0%
CAGTAAGAACTCGGCAAATA+AGG - Chr1:38653161-38653180 None:intergenic 40.0%
CCAAGAATCCAATATGAACG+GGG - Chr1:38653243-38653262 None:intergenic 40.0%
CTCAACTTTACCCTCACTTT+GGG - Chr1:38653685-38653704 None:intergenic 40.0%
CTCCTAGACTCTGAATAGTA+CGG - Chr1:38652335-38652354 None:intergenic 40.0%
CTGAGCTATTCTCAGGAAAT+GGG - Chr1:38651489-38651508 None:intergenic 40.0%
GACCAAAGAAGAACTGTTGT+GGG + Chr1:38653079-38653098 MsG0180002460.01.T01:intron 40.0%
GAGACTCTCATCATCATTCA+AGG + Chr1:38651906-38651925 MsG0180002461.01.T01:intron 40.0%
GATAGAATGAAACCATGAGG+TGG - Chr1:38651252-38651271 None:intergenic 40.0%
GGATAATACCATTCAACCAG+AGG - Chr1:38653764-38653783 None:intergenic 40.0%
GGGTAAGTTACTGTGAATTG+AGG - Chr1:38650916-38650935 MsG0180002459.01.T01:intron 40.0%
GTAAGAACTCGGCAAATAAG+GGG - Chr1:38653159-38653178 None:intergenic 40.0%
TACCAACTGAGCTACACTTA+CGG - Chr1:38650601-38650620 MsG0180002459.01.T01:intron 40.0%
TATCAAAGATACCTCTTCGG+TGG - Chr1:38653123-38653142 None:intergenic 40.0%
TCAACTTTACCCTCACTTTG+GGG - Chr1:38653684-38653703 None:intergenic 40.0%
TCTGACCGAACAATAACATG+AGG + Chr1:38654208-38654227 MsG0180002460.01.T01:intron 40.0%
TCTGGTTGTTTGAAGGTTCT+TGG + Chr1:38652786-38652805 MsG0180002460.01.T01:intron 40.0%
TGATAATAGCACAGCCCAAA+AGG - Chr1:38651710-38651729 None:intergenic 40.0%
TGCTATCTCTCAAACGATGT+GGG - Chr1:38651577-38651596 None:intergenic 40.0%
TTAGAAGCAGGACAAAGACA+GGG + Chr1:38652193-38652212 MsG0180002460.01.T01:intron 40.0%
TTGAATTTCTCTTGACGCTC+TGG - Chr1:38654149-38654168 None:intergenic 40.0%
TTGGGATGTAGACTTAAGTC+TGG + Chr1:38652751-38652770 MsG0180002460.01.T01:CDS 40.0%
TTTAGAAGCAGGACAAAGAC+AGG + Chr1:38652192-38652211 MsG0180002460.01.T01:intron 40.0%
! AAAGTTGTTTGGAGCTGACA+AGG + Chr1:38652457-38652476 MsG0180002460.01.T01:CDS 40.0%
! ACTAGGGATAATTTGTGCAG+GGG + Chr1:38650624-38650643 MsG0180002461.01.T01:intron 40.0%
! ATTCAAGGAAGTATGATGCC+AGG + Chr1:38651921-38651940 MsG0180002461.01.T01:CDS 40.0%
! ATTTTCCACATGTTGCAGTC+TGG + Chr1:38654095-38654114 MsG0180002460.01.T01:intron 40.0%
! CAGAATCGTTGTTGTTGTTG+TGG - Chr1:38651156-38651175 MsG0180002459.01.T01:CDS 40.0%
! CTACTAGGGATAATTTGTGC+AGG + Chr1:38650622-38650641 MsG0180002461.01.T01:intron 40.0%
! CTTCATGACTGCATGTTTTG+AGG + Chr1:38653327-38653346 MsG0180002460.01.T01:intron 40.0%
! GATGCCAATTCTGGAAAAGA+TGG + Chr1:38652479-38652498 MsG0180002460.01.T01:CDS 40.0%
! GTTGGATTCTGGTTGTTTGA+AGG + Chr1:38652779-38652798 MsG0180002460.01.T01:intron 40.0%
! TGCAGAATGTGGATTGTTGT+GGG + Chr1:38652827-38652846 MsG0180002460.01.T01:intron 40.0%
! TTCAAGGAAGTATGATGCCA+GGG + Chr1:38651922-38651941 MsG0180002461.01.T01:CDS 40.0%
! TTGCAGAATGTGGATTGTTG+TGG + Chr1:38652826-38652845 MsG0180002460.01.T01:intron 40.0%
! TTGTTGTTGTTGTGGTCATG+AGG - Chr1:38651148-38651167 MsG0180002459.01.T01:CDS 40.0%
! TTTGGAGTACTCGCTTTAGA+GGG + Chr1:38653468-38653487 MsG0180002460.01.T01:intron 40.0%
!! GTGGGTTGGATGTATATCAT+GGG + Chr1:38652845-38652864 MsG0180002460.01.T01:intron 40.0%
!! TGTGGGTTGGATGTATATCA+TGG + Chr1:38652844-38652863 MsG0180002460.01.T01:intron 40.0%
!! TTTTTCAGAACTGTAGGCCT+AGG - Chr1:38653970-38653989 None:intergenic 40.0%
!!! GCATGTTTTGAGGTGACAAA+AGG + Chr1:38653337-38653356 MsG0180002460.01.T01:intron 40.0%
!!! GGAGGTTTTTTCAGAACTGT+AGG - Chr1:38653976-38653995 None:intergenic 40.0%
AACATATGAGGAGGTGGAGA+AGG + Chr1:38652226-38652245 MsG0180002460.01.T01:CDS 45.0%
AATGAGGTAAAACCCACCCT+AGG + Chr1:38653648-38653667 MsG0180002460.01.T01:intron 45.0%
AATTCAAAGACCTGAGGTGG+AGG - Chr1:38653994-38654013 None:intergenic 45.0%
ACAGAGTGAGTCAGTCATTC+AGG - Chr1:38654250-38654269 None:intergenic 45.0%
ACCAACTGAGCTACACTTAC+GGG - Chr1:38650600-38650619 MsG0180002459.01.T01:intron 45.0%
ACTCTGAATAGTACGGTGCA+CGG - Chr1:38652328-38652347 None:intergenic 45.0%
ACTGGGATGCACTAGCTAAT+AGG + Chr1:38651214-38651233 MsG0180002461.01.T01:intron 45.0%
AGCAGTATACTGCAGGTCTT+CGG + Chr1:38654440-38654459 MsG0180002460.01.T01:three_prime_UTR 45.0%
AGGGGCTAATTGCTTGACTA+CGG + Chr1:38653057-38653076 MsG0180002460.01.T01:intron 45.0%
AGTAAGACGCCTCAACCATT+AGG + Chr1:38653494-38653513 MsG0180002460.01.T01:intron 45.0%
ATGAGACCAAGCCAGTTTAG+GGG + Chr1:38652622-38652641 MsG0180002460.01.T01:CDS 45.0%
ATTAGCTAGTGCATCCCAGT+AGG - Chr1:38651214-38651233 None:intergenic 45.0%
CAAACACAACCCCACAAAAC+CGG - Chr1:38651641-38651660 None:intergenic 45.0%
CAACTTTACCCTCACTTTGG+GGG - Chr1:38653683-38653702 None:intergenic 45.0%
CACCGTACTATTCAGAGTCT+AGG + Chr1:38652330-38652349 MsG0180002460.01.T01:CDS 45.0%
CATGAGACCAAGCCAGTTTA+GGG + Chr1:38652621-38652640 MsG0180002460.01.T01:CDS 45.0%
CATGTGGAAAATGCATTGCC+GGG - Chr1:38654087-38654106 None:intergenic 45.0%
CCAAAGTGAGGGTAAAGTTG+AGG + Chr1:38653683-38653702 MsG0180002460.01.T01:intron 45.0%
CCAATATGAACGGGGAGAAA+AGG - Chr1:38653235-38653254 None:intergenic 45.0%
CCCCGTTCATATTGGATTCT+TGG + Chr1:38653240-38653259 MsG0180002460.01.T01:intron 45.0%
CCTCAACTTTACCCTCACTT+TGG - Chr1:38653686-38653705 None:intergenic 45.0%
CTAGAGAAGCAGTATACTGC+AGG + Chr1:38654433-38654452 MsG0180002460.01.T01:exon 45.0%
CTCAGTTGTGCAAGTCATGA+AGG + Chr1:38653392-38653411 MsG0180002460.01.T01:intron 45.0%
GAAACTTACAGTCTGACCTG+AGG + Chr1:38653723-38653742 MsG0180002460.01.T01:intron 45.0%
GAATCCAGCCATTAGACTAC+TGG + Chr1:38650695-38650714 MsG0180002461.01.T01:intron 45.0%
GCAGATGAAAGGAAGACTTC+AGG + Chr1:38652585-38652604 MsG0180002460.01.T01:CDS 45.0%
GGACCAAAGAAGAACTGTTG+TGG + Chr1:38653078-38653097 MsG0180002460.01.T01:intron 45.0%
GTACTCCAAAGTTGCTAGAG+CGG - Chr1:38653458-38653477 None:intergenic 45.0%
GTGGTAAATGGTGAGTTCCT+AGG + Chr1:38653950-38653969 MsG0180002460.01.T01:intron 45.0%
TACTCCAAAGTTGCTAGAGC+GGG - Chr1:38653457-38653476 None:intergenic 45.0%
TCACACCCTACAATTGCCAT+AGG - Chr1:38654322-38654341 None:intergenic 45.0%
TCATGAGACCAAGCCAGTTT+AGG + Chr1:38652620-38652639 MsG0180002460.01.T01:CDS 45.0%
TCGTGCCTATGGCAATTGTA+GGG + Chr1:38654314-38654333 MsG0180002460.01.T01:intron 45.0%
TCTAAGAGAACCACTGCTTC+TGG - Chr1:38651966-38651985 None:intergenic 45.0%
TCTGAAAAAACCTCCACCTC+AGG + Chr1:38653981-38654000 MsG0180002460.01.T01:intron 45.0%
TGGCAATTGTAGGGTGTGAA+AGG + Chr1:38654323-38654342 MsG0180002460.01.T01:intron 45.0%
TGTAGACTTAAGTCTGGCGT+TGG + Chr1:38652757-38652776 MsG0180002460.01.T01:CDS 45.0%
TGTGAAAGGAGAAGCCAAAG+TGG + Chr1:38654337-38654356 MsG0180002460.01.T01:CDS 45.0%
TTCAGAGTCTAGGAGCCAAA+AGG + Chr1:38652340-38652359 MsG0180002460.01.T01:CDS 45.0%
TTGTCCAGTAGTCTAATGGC+TGG - Chr1:38650702-38650721 MsG0180002459.01.T01:intron 45.0%
! CCTTTTCTCCCCGTTCATAT+TGG + Chr1:38653232-38653251 MsG0180002460.01.T01:intron 45.0%
! GAATGTGGATTGTTGTGGGT+TGG + Chr1:38652831-38652850 MsG0180002460.01.T01:intron 45.0%
! TTGTTGTTGTGGTCATGAGG+CGG - Chr1:38651145-38651164 MsG0180002459.01.T01:CDS 45.0%
!! AAGGAGAAGCGTTCAAGAGA+CGG + Chr1:38652245-38652264 MsG0180002460.01.T01:CDS 45.0%
!! AGCTCAGTTGGTAGCTACTA+GGG + Chr1:38650608-38650627 MsG0180002461.01.T01:intron 45.0%
!! CTTTGGAGTACTCGCTTTAG+AGG + Chr1:38653467-38653486 MsG0180002460.01.T01:intron 45.0%
!! TAGCTCAGTTGGTAGCTACT+AGG + Chr1:38650607-38650626 MsG0180002461.01.T01:intron 45.0%
!!! CAGGACCACTGTTTTGATAG+TGG + Chr1:38652649-38652668 MsG0180002460.01.T01:CDS 45.0%
!!! TTTTTTTTAATGTTTTTTTA+GGG + Chr1:38651272-38651291 MsG0180002461.01.T01:intron 5.0%
AACTCCCGCTCTAGCAACTT+TGG + Chr1:38653450-38653469 MsG0180002460.01.T01:intron 50.0%
ACGCTCTACACGTGACTCAA+GGG + Chr1:38652078-38652097 MsG0180002460.01.T01:intron 50.0%
ATTCTGACAGACACTCCTCC+CGG + Chr1:38651987-38652006 MsG0180002460.01.T01:CDS 50.0%
CAAACACTGCCATATCCCAG+CGG - Chr1:38654124-38654143 None:intergenic 50.0%
CAAGCGTGAACACAGCTCAA+GGG + Chr1:38651869-38651888 MsG0180002461.01.T01:intron 50.0%
CGTACTTGTCATGCCTAGAG+TGG - Chr1:38652024-38652043 None:intergenic 50.0%
CTCGTGCCTATGGCAATTGT+AGG + Chr1:38654313-38654332 MsG0180002460.01.T01:intron 50.0%
CTGCATTTCGCAAGCCTACT+GGG + Chr1:38651197-38651216 MsG0180002461.01.T01:intron 50.0%
CTTGAGCTGTGTTCACGCTT+GGG - Chr1:38651870-38651889 None:intergenic 50.0%
GAAGCAGAAGGAACTTCAGC+TGG + Chr1:38654408-38654427 MsG0180002460.01.T01:CDS 50.0%
GAAGCGTGCAACATATGAGG+AGG + Chr1:38652217-38652236 MsG0180002460.01.T01:CDS 50.0%
GAATGAAACCATGAGGTGGG+CGG - Chr1:38651248-38651267 None:intergenic 50.0%
GATGGCCGTACAGTTGGATT+AGG + Chr1:38654469-38654488 MsG0180002460.01.T01:three_prime_UTR 50.0%
GCCCCACAACAGTTCTTCTT+TGG - Chr1:38653084-38653103 None:intergenic 50.0%
GCTGACAAGGATGCCAATTC+TGG + Chr1:38652470-38652489 MsG0180002460.01.T01:CDS 50.0%
GTAGAGAAGTGGGGAATTCG+AGG - Chr1:38650662-38650681 MsG0180002459.01.T01:intron 50.0%
GTCAGAGTTCTGCTCCACTT+TGG - Chr1:38654354-38654373 None:intergenic 50.0%
GTTCCTTCTGCTTCTCAGCA+CGG - Chr1:38654402-38654421 None:intergenic 50.0%
TACCATTCAACCAGAGGCCA+AGG - Chr1:38653758-38653777 None:intergenic 50.0%
TCCCGTAAGTGTAGCTCAGT+TGG + Chr1:38650596-38650615 MsG0180002461.01.T01:intron 50.0%
TGAGGTTGTACTCGTGCCTA+TGG + Chr1:38654303-38654322 MsG0180002460.01.T01:intron 50.0%
! AAAGAGTACACCCACCGAAG+AGG + Chr1:38653109-38653128 MsG0180002460.01.T01:intron 50.0%
! GATAATTTGTGCAGGGGCTG+GGG + Chr1:38650630-38650649 MsG0180002461.01.T01:intron 50.0%
! GGAGAAGCGTGCAACATATG+AGG + Chr1:38652214-38652233 MsG0180002460.01.T01:CDS 50.0%
! GGATAATTTGTGCAGGGGCT+GGG + Chr1:38650629-38650648 MsG0180002461.01.T01:intron 50.0%
! GGGGGCATACGAGTAAGTTT+AGG - Chr1:38650945-38650964 MsG0180002459.01.T01:intron 50.0%
!! ACAAAACCGGTTTGTGAGGG+AGG - Chr1:38651628-38651647 None:intergenic 50.0%
!! AGGAGAAGCGTTCAAGAGAC+GGG + Chr1:38652246-38652265 MsG0180002460.01.T01:CDS 50.0%
!! CCCACAAAACCGGTTTGTGA+GGG - Chr1:38651631-38651650 None:intergenic 50.0%
!! CCCTCACAAACCGGTTTTGT+GGG + Chr1:38651628-38651647 MsG0180002461.01.T01:intron 50.0%
!! CCTCACAAACCGGTTTTGTG+GGG + Chr1:38651629-38651648 MsG0180002461.01.T01:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+TGG + Chr1:38651639-38651658 MsG0180002461.01.T01:intron 50.0%
!! GACTTAAGTCTGGCGTTGGT+TGG + Chr1:38652761-38652780 MsG0180002460.01.T01:CDS 50.0%
!! TCCCTCACAAACCGGTTTTG+TGG + Chr1:38651627-38651646 MsG0180002461.01.T01:intron 50.0%
AAGCCAGTTTAGGGGCTGTC+AGG + Chr1:38652630-38652649 MsG0180002460.01.T01:CDS 55.0%
AATCCCAGCCCCCAAAGTGA+GGG + Chr1:38653672-38653691 MsG0180002460.01.T01:intron 55.0%
AATTATCGCCGCCCACCTCA+TGG + Chr1:38651237-38651256 MsG0180002461.01.T01:CDS 55.0%
ACCTGAGGGCAAACTTGCCT+TGG + Chr1:38653738-38653757 MsG0180002460.01.T01:intron 55.0%
ATGCCTAGAGTGGCCATAGG+AGG - Chr1:38652014-38652033 None:intergenic 55.0%
CACGCTCTACACGTGACTCA+AGG + Chr1:38652077-38652096 MsG0180002460.01.T01:intron 55.0%
CCAAGCGTGAACACAGCTCA+AGG + Chr1:38651868-38651887 MsG0180002461.01.T01:intron 55.0%
CCAGTAGGCTTGCGAAATGC+AGG - Chr1:38651199-38651218 None:intergenic 55.0%
CCTGCATTTCGCAAGCCTAC+TGG + Chr1:38651196-38651215 MsG0180002461.01.T01:intron 55.0%
CCTTGAGCTGTGTTCACGCT+TGG - Chr1:38651871-38651890 None:intergenic 55.0%
CGAAGAGATGGCCGTACAGT+TGG + Chr1:38654463-38654482 MsG0180002460.01.T01:three_prime_UTR 55.0%
CGCTCTACACGTGACTCAAG+GGG + Chr1:38652079-38652098 MsG0180002460.01.T01:intron 55.0%
GCGTGCAACATATGAGGAGG+TGG + Chr1:38652220-38652239 MsG0180002460.01.T01:CDS 55.0%
GGCAATCCTCCCTCACAAAC+CGG + Chr1:38651619-38651638 MsG0180002461.01.T01:intron 55.0%
GTCATGCCTAGAGTGGCCAT+AGG - Chr1:38652017-38652036 None:intergenic 55.0%
TAATCCCAGCCCCCAAAGTG+AGG + Chr1:38653671-38653690 MsG0180002460.01.T01:intron 55.0%
TAGAGTGGCCATAGGAGGAC+CGG - Chr1:38652009-38652028 None:intergenic 55.0%
TGACAGCCCCTAAACTGGCT+TGG - Chr1:38652631-38652650 None:intergenic 55.0%
TGAGTGAAGAGAGCGACAGC+AGG + Chr1:38652110-38652129 MsG0180002460.01.T01:intron 55.0%
TGCCTTGGCCTCTGGTTGAA+TGG + Chr1:38653753-38653772 MsG0180002460.01.T01:intron 55.0%
TTGGGGGCTGGGATTACCTA+GGG - Chr1:38653667-38653686 None:intergenic 55.0%
TTGTTGTGGTCATGAGGCGG+AGG - Chr1:38651142-38651161 MsG0180002459.01.T01:CDS 55.0%
TTTGGGGGCTGGGATTACCT+AGG - Chr1:38653668-38653687 None:intergenic 55.0%
! GGGATAATTTGTGCAGGGGC+TGG + Chr1:38650628-38650647 MsG0180002461.01.T01:intron 55.0%
! TTACCCTCACTTTGGGGGCT+GGG - Chr1:38653678-38653697 None:intergenic 55.0%
! TTTACCCTCACTTTGGGGGC+TGG - Chr1:38653679-38653698 None:intergenic 55.0%
!! CCCCACAAAACCGGTTTGTG+AGG - Chr1:38651632-38651651 None:intergenic 55.0%
!! GGAGAAGCGTTCAAGAGACG+GGG + Chr1:38652247-38652266 MsG0180002460.01.T01:CDS 55.0%
!! GTCTGGCGTTGGTTGGATTC+TGG + Chr1:38652768-38652787 MsG0180002460.01.T01:CDS 55.0%
ACACTGCCATATCCCAGCGG+TGG - Chr1:38654121-38654140 None:intergenic 60.0%
AGAGTGGCCATAGGAGGACC+GGG - Chr1:38652008-38652027 None:intergenic 60.0%
CCTCCGTGCTGAGAAGCAGA+AGG + Chr1:38654396-38654415 MsG0180002460.01.T01:CDS 60.0%
CCTTCTGCTTCTCAGCACGG+AGG - Chr1:38654399-38654418 None:intergenic 60.0%
GCAGGTCTTCGGCGAAGAGA+TGG + Chr1:38654451-38654470 MsG0180002460.01.T01:three_prime_UTR 60.0%
GCCAAGGCAAGTTTGCCCTC+AGG - Chr1:38653742-38653761 None:intergenic 60.0%
GGCAAACTTGCCTTGGCCTC+TGG + Chr1:38653745-38653764 MsG0180002460.01.T01:intron 60.0%
GGGCTGGGATTACCTAGGGT+GGG - Chr1:38653663-38653682 None:intergenic 60.0%
GGTCCTCCTATGGCCACTCT+AGG + Chr1:38652008-38652027 MsG0180002460.01.T01:CDS 60.0%
GGTCCTGACAGCCCCTAAAC+TGG - Chr1:38652636-38652655 None:intergenic 60.0%
GGTGGCCAGACTGCAACATG+TGG - Chr1:38654103-38654122 None:intergenic 60.0%
CACTCCTCCCGGTCCTCCTA+TGG + Chr1:38651998-38652017 MsG0180002460.01.T01:CDS 65.0%
GGGGCTGGGATTACCTAGGG+TGG - Chr1:38653664-38653683 None:intergenic 65.0%
GTCTGGCCACCGCTGGGATA+TGG + Chr1:38654112-38654131 MsG0180002460.01.T01:intron 65.0%
GTTGCAGTCTGGCCACCGCT+GGG + Chr1:38654106-38654125 MsG0180002460.01.T01:intron 65.0%
TGTTGCAGTCTGGCCACCGC+TGG + Chr1:38654105-38654124 MsG0180002460.01.T01:intron 65.0%
GTGGCCATAGGAGGACCGGG+AGG - Chr1:38652005-38652024 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38650187 38654498 38650187 ID=MsG0180002461.01;
Chr1 mRNA 38650187 38654498 38650187 ID=MsG0180002461.01.T01;Parent=MsG0180002461.01
Chr1 CDS 38650187 38650198 38650187 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38650818 38650924 38650818 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38651236 38651258 38651236 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38651573 38651603 38651573 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38651704 38651762 38651704 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38651909 38652168 38651909 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38652236 38652505 38652236 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38652589 38652720 38652589 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38652832 38652844 38652832 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38653041 38653113 38653041 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38653204 38653214 38653204 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38653869 38653882 38653869 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38654113 38654178 38654113 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38654335 38654355 38654335 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1 CDS 38654409 38654498 38654409 ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Gene Sequence

>MsG0180002461.01.T01

ATGTCTCCAAAATGTAAACGACATTGCAATTGTGTTTGTTCGAAACAAAACGACGAGAGAAGAGGGAAAAATCAATCAATCGAGGGTTTCGTTCTTCTCGTCATCATCCTCAATTCACAGAATTATCGCCGCCCACCTCATGTCCCACATCGTTTGAGAGATAGCATGAATAATCGCCTTTTGGGCTGTGCTATTATCATTTATCACTATCACCCACCAAATACTTTGTTCGACTCTCATCATCATTCAAGGAAGTATGATGCCAGGGAACAAGACACAAAATATGCCAGAAGCAGTGGTTCTCTTAGACATTCTGACAGACACTCCTCCCGGTCCTCCTATGGCCACTCTAGGCATGACAAGTACGCAGATGAATATAGAAAACATGAGAGGTTATCATCACGCTCTACACGTGACTCAAGGGGCGATCAAATGAGTGAAGAGAGCGACAGCAGGTCAAAGATTACAAGCGTAGTATGGACAAGTATCCACGAGGTGGAGAAGGAGAAGCGTTCAAGAGACGGGGATGCTCGAGATGAAAAAAAAGATTCACAAAGAAGTTCTGGAGAACACAAAAGTGACCGTGCACCGTACTATTCAGAGTCTAGGAGCCAAAAGGACGACATTGAGATTAGTAAGAACAAGGACCGAAACTCTAAAAAAGTAGGAGAGGTATTTGGTATTGAAGATAAAGAATCTTCTGGAAAGAAACAAAAGTTGTTTGGAGCTGACAAGGATGCCAATTCTGGAAAAGATGGTATTATGAAAGGAAGACTTCAGGTTCAAAGCTTTCTCATGAGACCAAGCCAGTTTAGGGGCTGTCAGGACCACTGTTTTGATAGTGGCAATAATGTAGATGCTGCAAAAGTGGCAGCAATGAGAGCTGCTGAATTAAATGTGGATTGTTTTAACAAGAACTTAGTAGGGGCTAATTGCTTGACTACGGACCAAAGAAGAACTGTTGTGGGGCAGCAAAAAGAGAGTACTTTGATTATCGACTTATCCTCTGGCCACCGCTGGGATATGGCAGTGTTTGATCCAGAGCGTCAAGAGAAATTCAACAAACTCATGGGTGTGAAAGGAGAAGCCAAAAAGCAGAAGGAACTTCAGCTGGATCTAGAGAAGCAGTATACTGCAGGTCTTCGGCGAAGAGATGGCCGTACAGTTGGATTAGGTCTTTAA
Protein sequence

>MsG0180002461.01.T01

MSPKCKRHCNCVCSKQNDERRGKNQSIEGFVLLVIILNSQNYRRPPHVPHRLRDSMNNRLLGCAIIIYHYHPPNTLFDSHHHSRKYDAREQDTKYARSSGSLRHSDRHSSRSSYGHSRHDKYADEYRKHERLSSRSTRDSRGDQMSEESDSRSKITSVVWTSIHEVEKEKRSRDGDARDEKKDSQRSSGEHKSDRAPYYSESRSQKDDIEISKNKDRNSKKVGEVFGIEDKESSGKKQKLFGADKDANSGKDGIMKGRLQVQSFLMRPSQFRGCQDHCFDSGNNVDAAKVAAMRAAELNVDCFNKNLVGANCLTTDQRRTVVGQQKESTLIIDLSSGHRWDMAVFDPERQEKFNKLMGVKGEAKKQKELQLDLEKQYTAGLRRRDGRTVGLGL*