AlfalfaGEDB | MsG0180002461.01

M. sativa cultivar ZhongmuNo.1 / MsG0180002461.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002461.01.T01	XP_024631772.1	66.08	398	74	6	36	393	37	413	1.96E-151	444

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002461.01.T01	G7I7C6	66.080	398	74	6	36	393	37	413	9.34e-152	444

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180002460.01	MsG0180002461.01	0.904014	1.909457e-79	2.896901e-75
MsG0180002461.01	MsG0880046903.01	0.805942	1.046415e-49	5.608334e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002461.01.T01	MTR_1g050510	66.080	398	74	6	36	393	37	413	2.37e-155	444
MsG0180002461.01.T01	MTR_1g050510	65.797	345	74	5	36	357	37	360	6.63e-131	380
MsG0180002461.01.T01	MTR_1g050510	72.800	250	44	4	161	393	40	282	6.96e-105	311
MsG0180002461.01.T01	MTR_0722s0010	77.333	75	0	1	336	393	1	75	5.11e-31	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002461.01.T01	AT3G56720	38.506	348	150	11	82	393	68	387	1.13e-35	135
MsG0180002461.01.T01	AT3G56720	38.218	348	150	11	82	393	68	386	3.88e-35	133
MsG0180002461.01.T01	AT3G56720	33.003	303	150	10	82	360	68	341	1.65e-15	78.2
MsG0180002461.01.T01	AT3G56720	33.333	300	147	10	82	357	68	338	4.89e-15	76.3

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Find 0 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGTTCAGTAAGAACT+CGG	-	Chr1:38653170-38653189	None:intergenic	30.0%
AAAGATAGAATGAAACCATG+AGG	-	Chr1:38651255-38651274	None:intergenic	30.0%
AAAGATTCACAAAGAAGTTC+TGG	+	Chr1:38652287-38652306	MsG0180002460.01.T01:CDS	30.0%
AACTATTCAGTCAATGTAAC+AGG	-	Chr1:38653851-38653870	None:intergenic	30.0%
AATATCGCACACTTTAAATG+AGG	+	Chr1:38653632-38653651	MsG0180002460.01.T01:intron	30.0%
AATCTCCTCATGTTATTGTT+CGG	-	Chr1:38654216-38654235	None:intergenic	30.0%
ACAGTTAACAAGAACTTAGT+AGG	+	Chr1:38653037-38653056	MsG0180002460.01.T01:intron	30.0%
AGAATAGCTCAGATAAAACT+TGG	-	Chr1:38651786-38651805	None:intergenic	30.0%
AGAGAAATTCAACAAACTCA+TGG	+	Chr1:38654157-38654176	MsG0180002460.01.T01:CDS	30.0%
AGGATAATTAGAGTGGTAAA+TGG	+	Chr1:38653938-38653957	MsG0180002460.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	38650187	38654498	38650187	ID=MsG0180002461.01;
Chr1	mRNA	38650187	38654498	38650187	ID=MsG0180002461.01.T01;Parent=MsG0180002461.01
Chr1	CDS	38650187	38650198	38650187	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38650818	38650924	38650818	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38651236	38651258	38651236	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38651573	38651603	38651573	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38651704	38651762	38651704	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38651909	38652168	38651909	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38652236	38652505	38652236	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38652589	38652720	38652589	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38652832	38652844	38652832	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38653041	38653113	38653041	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38653204	38653214	38653204	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38653869	38653882	38653869	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38654113	38654178	38654113	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38654335	38654355	38654335	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01
Chr1	CDS	38654409	38654498	38654409	ID=MsG0180002461.01.T01.cds;Parent=MsG0180002461.01.T01

Gene Sequence

>MsG0180002461.01.T01

ATGTCTCCAAAATGTAAACGACATTGCAATTGTGTTTGTTCGAAACAAAACGACGAGAGAAGAGGGAAAAATCAATCAATCGAGGGTTTCGTTCTTCTCGTCATCATCCTCAATTCACAGAATTATCGCCGCCCACCTCATGTCCCACATCGTTTGAGAGATAGCATGAATAATCGCCTTTTGGGCTGTGCTATTATCATTTATCACTATCACCCACCAAATACTTTGTTCGACTCTCATCATCATTCAAGGAAGTATGATGCCAGGGAACAAGACACAAAATATGCCAGAAGCAGTGGTTCTCTTAGACATTCTGACAGACACTCCTCCCGGTCCTCCTATGGCCACTCTAGGCATGACAAGTACGCAGATGAATATAGAAAACATGAGAGGTTATCATCACGCTCTACACGTGACTCAAGGGGCGATCAAATGAGTGAAGAGAGCGACAGCAGGTCAAAGATTACAAGCGTAGTATGGACAAGTATCCACGAGGTGGAGAAGGAGAAGCGTTCAAGAGACGGGGATGCTCGAGATGAAAAAAAAGATTCACAAAGAAGTTCTGGAGAACACAAAAGTGACCGTGCACCGTACTATTCAGAGTCTAGGAGCCAAAAGGACGACATTGAGATTAGTAAGAACAAGGACCGAAACTCTAAAAAAGTAGGAGAGGTATTTGGTATTGAAGATAAAGAATCTTCTGGAAAGAAACAAAAGTTGTTTGGAGCTGACAAGGATGCCAATTCTGGAAAAGATGGTATTATGAAAGGAAGACTTCAGGTTCAAAGCTTTCTCATGAGACCAAGCCAGTTTAGGGGCTGTCAGGACCACTGTTTTGATAGTGGCAATAATGTAGATGCTGCAAAAGTGGCAGCAATGAGAGCTGCTGAATTAAATGTGGATTGTTTTAACAAGAACTTAGTAGGGGCTAATTGCTTGACTACGGACCAAAGAAGAACTGTTGTGGGGCAGCAAAAAGAGAGTACTTTGATTATCGACTTATCCTCTGGCCACCGCTGGGATATGGCAGTGTTTGATCCAGAGCGTCAAGAGAAATTCAACAAACTCATGGGTGTGAAAGGAGAAGCCAAAAAGCAGAAGGAACTTCAGCTGGATCTAGAGAAGCAGTATACTGCAGGTCTTCGGCGAAGAGATGGCCGTACAGTTGGATTAGGTCTTTAA

Protein sequence

>MsG0180002461.01.T01

MSPKCKRHCNCVCSKQNDERRGKNQSIEGFVLLVIILNSQNYRRPPHVPHRLRDSMNNRLLGCAIIIYHYHPPNTLFDSHHHSRKYDAREQDTKYARSSGSLRHSDRHSSRSSYGHSRHDKYADEYRKHERLSSRSTRDSRGDQMSEESDSRSKITSVVWTSIHEVEKEKRSRDGDARDEKKDSQRSSGEHKSDRAPYYSESRSQKDDIEISKNKDRNSKKVGEVFGIEDKESSGKKQKLFGADKDANSGKDGIMKGRLQVQSFLMRPSQFRGCQDHCFDSGNNVDAAKVAAMRAAELNVDCFNKNLVGANCLTTDQRRTVVGQQKESTLIIDLSSGHRWDMAVFDPERQEKFNKLMGVKGEAKKQKELQLDLEKQYTAGLRRRDGRTVGLGL*