AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002603.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002603.01.T01 MTR_1g066530 80.861 209 16 2 1 186 1 208 1.45e-115 335
MsG0180002603.01.T01 MTR_6g072470 44.444 216 87 5 1 187 1 212 1.31e-46 158
MsG0180002603.01.T01 MTR_6g073540 44.554 202 82 3 1 173 1 201 1.95e-44 153
MsG0180002603.01.T01 MTR_6g048620 42.857 196 85 4 6 174 5 200 2.15e-39 139
MsG0180002603.01.T01 MTR_0695s0030 38.967 213 101 5 6 190 65 276 2.51e-38 139
MsG0180002603.01.T01 MTR_6g045077 38.756 209 99 5 4 186 3 208 1.08e-36 132
MsG0180002603.01.T01 MTR_8g038070 40.838 191 86 4 6 170 219 408 1.14e-36 138
MsG0180002603.01.T01 MTR_8g038100 38.967 213 101 5 6 190 281 492 1.87e-36 138
MsG0180002603.01.T01 MTR_6g048910 40.000 195 88 6 6 172 5 198 9.35e-36 130
MsG0180002603.01.T01 MTR_7g103990 35.859 198 100 4 3 173 4 201 1.09e-30 117
MsG0180002603.01.T01 MTR_0057s0100 36.410 195 96 5 3 170 4 197 1.68e-30 116
MsG0180002603.01.T01 MTR_0216s0030 36.923 195 99 5 4 175 1 194 5.64e-30 114
MsG0180002603.01.T01 MTR_0057s0170 35.385 195 98 5 3 170 4 197 1.27e-28 111
MsG0180002603.01.T01 MTR_6g048810 49.231 130 59 5 61 186 162 288 3.92e-28 112
MsG0180002603.01.T01 MTR_6g040290 36.500 200 97 6 3 173 4 202 5.44e-28 109
MsG0180002603.01.T01 MTR_4g102470 40.994 161 88 6 6 160 7 166 8.51e-28 108
MsG0180002603.01.T01 MTR_0807s0020 34.343 198 102 6 1 172 1 196 8.04e-25 100
MsG0180002603.01.T01 MTR_6g048880 37.107 159 83 6 20 172 7 154 1.88e-24 99.0
MsG0180002603.01.T01 MTR_7g012000 34.703 219 88 7 3 193 4 195 2.06e-24 99.4
MsG0180002603.01.T01 MTR_6g049040 32.727 165 68 5 1 165 1 122 5.05e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 69 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCTAATGGCGAAAATTTC+TGG 0.125611 1:-41352791 None:intergenic
GTTATCCTCATTGTTATATT+TGG 0.192385 1:+41354184 MsG0180002603.01.T01:CDS
CTCGGTACGGTCTTTGAAAA+TGG 0.203555 1:+41351303 MsG0180002603.01.T01:CDS
TATTCTAGACACTTTCAAAT+TGG 0.205035 1:+41354067 MsG0180002603.01.T01:CDS
TCAAATTGGGCGTTACAATT+TGG 0.231085 1:+41354081 MsG0180002603.01.T01:CDS
ATCCGGAGCGAAATCTATTT+TGG 0.245116 1:-41351070 None:intergenic
TTTAACAACATGATCCTTCT+TGG 0.249024 1:-41350936 None:intergenic
TGGATGGGCCAGCATGCTTT+TGG 0.301798 1:+41352821 MsG0180002603.01.T01:CDS
AGCTAATAGCGAGTTTCTTC+GGG 0.316481 1:-41352731 None:intergenic
CGCTAATAGCGAATTTCTTC+AGG 0.331492 1:+41352761 MsG0180002603.01.T01:CDS
CGCTAATGGCGAAAATTTCT+GGG 0.332026 1:-41352790 None:intergenic
GAGCTAATAGCGAGTTTCTT+CGG 0.356807 1:-41352732 None:intergenic
CATCCAGAGAGCTGCGCTAA+TGG 0.358430 1:-41352804 None:intergenic
GCCTCGTCCGCTTCGTGCTC+CGG 0.379681 1:-41354255 None:intergenic
TCGCCATTAGCGCAGCTCTC+TGG 0.383569 1:+41352801 MsG0180002603.01.T01:CDS
ACTCATTACACCATTCGTTC+TGG 0.384014 1:+41351267 MsG0180002603.01.T01:CDS
ATTCTAGACACTTTCAAATT+GGG 0.387282 1:+41354068 MsG0180002603.01.T01:CDS
AGTTGCAGCCCATTGTTGTT+GGG 0.402395 1:-41354405 None:intergenic
AACATGGTAGTGATTGGAAC+AGG 0.421529 1:-41351117 None:intergenic
TGCTCAGTCCCAACAACAAT+GGG 0.422976 1:+41354397 MsG0180002603.01.T01:CDS
GAATAAGAAAACATTATGTC+TGG 0.425454 1:-41351196 None:intergenic
TGCGCCCACATATTAGCATC+CGG 0.432691 1:-41354317 None:intergenic
GTCGTTTCAGATCGTGCCTT+GGG 0.434206 1:+41354115 MsG0180002603.01.T01:CDS
TGAGGTTGTGAATTATGCTC+TGG 0.435061 1:+41350910 MsG0180002603.01.T01:CDS
GTTACGTGTTCAAGAAGAAA+AGG 0.439700 1:+41350885 MsG0180002603.01.T01:CDS
GTTCAAGAAGAAAAGGTTTG+AGG 0.450101 1:+41350892 MsG0180002603.01.T01:CDS
CATTAGCGCAGCTCTCTGGA+TGG 0.458214 1:+41352805 MsG0180002603.01.T01:CDS
CAATGGAACATGGTAGTGAT+TGG 0.462327 1:-41351123 None:intergenic
ACAGTTAGAGCGAGAATGTC+CGG 0.480075 1:+41354236 MsG0180002603.01.T01:CDS
GGTCGTTTCAGATCGTGCCT+TGG 0.481568 1:+41354114 MsG0180002603.01.T01:CDS
CATTCTGATTACCTCTTGAC+CGG 0.484670 1:-41354277 None:intergenic
TAGTTGCAGCCCATTGTTGT+TGG 0.487047 1:-41354406 None:intergenic
GTTCCATTGTCTCAAGGGAA+TGG 0.502398 1:+41351137 MsG0180002603.01.T01:CDS
TCCGGAGCACGAAGCGGACG+AGG 0.506576 1:+41354254 MsG0180002603.01.T01:CDS
AGTAAAGCGGTATCAGAATC+CGG 0.516573 1:-41351087 None:intergenic
GACAATACAGTCGCCTTCGT+TGG 0.522082 1:-41351409 None:intergenic
TTATGCTCTGGGAGCCAAGA+AGG 0.530144 1:+41350922 MsG0180002603.01.T01:CDS
GAGGTTGTGAATTATGCTCT+GGG 0.530720 1:+41350911 MsG0180002603.01.T01:CDS
GCGCCCACATATTAGCATCC+GGG 0.533495 1:-41354316 None:intergenic
GAATAGACGCTGCAATTAAG+TGG 0.535911 1:+41351172 MsG0180002603.01.T01:CDS
GCCAGAGAAAATGATCGCTT+CGG 0.536120 1:-41351037 None:intergenic
ATTAGCGCAGCTCTCTGGAT+GGG 0.536182 1:+41352806 MsG0180002603.01.T01:CDS
AGGAAATGAGTATGTTCGTA+TGG 0.536361 1:+41351221 MsG0180002603.01.T01:CDS
GAGCACGAAGCGGACGAGGC+CGG 0.536621 1:+41354258 MsG0180002603.01.T01:CDS
TCTGATACCGCTTTACTCGA+TGG 0.537400 1:+41351093 MsG0180002603.01.T01:CDS
TTACAATTTGGTATCAGAGC+AGG 0.538642 1:+41354093 MsG0180002603.01.T01:CDS
TACCATGTTCCATTGTCTCA+AGG 0.539896 1:+41351131 MsG0180002603.01.T01:CDS
AAACCATTCCCTTGAGACAA+TGG 0.541263 1:-41351140 None:intergenic
TGGCATGTTGGTCCATTCTG+AGG 0.553067 1:+41352841 MsG0180002603.01.T01:CDS
CCAACATGCCAAAAGCATGC+TGG 0.557266 1:-41352829 None:intergenic
ACCATGTTCCATTGTCTCAA+GGG 0.568018 1:+41351132 MsG0180002603.01.T01:CDS
AGCGGACGAGGCCGGTCAAG+AGG 0.571829 1:+41354266 MsG0180002603.01.T01:CDS
GATTGTGCCTTTGAGACAGA+AGG 0.572261 1:+41351012 MsG0180002603.01.T01:intron
ATGCTCAGTCCCAACAACAA+TGG 0.572302 1:+41354396 MsG0180002603.01.T01:CDS
ATGCACCACCGACCTCAGAA+TGG 0.578782 1:-41352853 None:intergenic
TGCCAAAATAGATTTCGCTC+CGG 0.582500 1:+41351068 MsG0180002603.01.T01:CDS
TTAACCCGGATGCTAATATG+TGG 0.584393 1:+41354312 MsG0180002603.01.T01:CDS
GAAGGCGACTGTATTGTCAA+TGG 0.604836 1:+41351414 MsG0180002603.01.T01:CDS
CGTATTGATATTTCCAACGA+AGG 0.614900 1:+41351396 MsG0180002603.01.T01:CDS
AAGAGGTAATCAGAATGTTG+AGG 0.636185 1:+41354283 MsG0180002603.01.T01:CDS
GAAATGCAGTATCAATGACT+TGG 0.637933 1:-41350841 None:intergenic
TGTTGAGGACAATGTTAACC+CGG 0.645379 1:+41354298 MsG0180002603.01.T01:CDS
TTCAACCAAATATAACAATG+AGG 0.651148 1:-41354189 None:intergenic
TCCCTTGAGACAATGGAACA+TGG 0.652822 1:-41351133 None:intergenic
ACATGGTAGTGATTGGAACA+GGG 0.671114 1:-41351116 None:intergenic
AGAATGTCCGGAGCACGAAG+CGG 0.677116 1:+41354248 MsG0180002603.01.T01:CDS
TAACCCGGATGCTAATATGT+GGG 0.681890 1:+41354313 MsG0180002603.01.T01:CDS
AACAGGGCCATCGAGTAAAG+CGG 0.682079 1:-41351100 None:intergenic
TGGGCTGCAACTATGCAACA+AGG 0.709529 1:+41354416 MsG0180002603.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATTAACATGATT+TGG - Chr1:41352560-41352579 None:intergenic 10.0%
!!! AATCATGTTAATTTTATTTT+TGG + Chr1:41352560-41352579 MsG0180002603.01.T01:intron 10.0%
!! ATAAACGTATTCATTAAATT+AGG - Chr1:41353397-41353416 None:intergenic 15.0%
!! TAAACGTATTCATTAAATTA+GGG - Chr1:41353396-41353415 None:intergenic 15.0%
!! AAAAGGTAAAGAAAAAACTT+TGG + Chr1:41353816-41353835 MsG0180002603.01.T01:intron 20.0%
!! AATAATGTAACATATGACTT+TGG + Chr1:41353956-41353975 MsG0180002603.01.T01:intron 20.0%
!! AATCATCAAGAATTATCTTT+GGG - Chr1:41352588-41352607 None:intergenic 20.0%
!! ATTAGATCTAGAAGTTTAAT+AGG - Chr1:41351482-41351501 None:intergenic 20.0%
!! TAATCATCAAGAATTATCTT+TGG - Chr1:41352589-41352608 None:intergenic 20.0%
!! TATATCACCATATAAATGAT+CGG - Chr1:41352112-41352131 None:intergenic 20.0%
!!! CATAATGTTTTCTTATTCAA+AGG + Chr1:41351201-41351220 MsG0180002603.01.T01:CDS 20.0%
!!! TTATCTGAAATCAACTTTTA+CGG - Chr1:41353355-41353374 None:intergenic 20.0%
! AACTATTATCTTACATGTCA+AGG - Chr1:41353577-41353596 None:intergenic 25.0%
! AAGAAATCACTTATTGATGA+TGG - Chr1:41352320-41352339 None:intergenic 25.0%
! AATGGTATTTCATCAAGAAA+TGG - Chr1:41350979-41350998 None:intergenic 25.0%
! AATTTAGTGACAGAATTAGA+CGG + Chr1:41351587-41351606 MsG0180002603.01.T01:intron 25.0%
! ACTAAGAAAACTCAAATCAT+AGG - Chr1:41352518-41352537 None:intergenic 25.0%
! ATATCACCATATAAATGATC+GGG - Chr1:41352111-41352130 None:intergenic 25.0%
! ATTCTAGACACTTTCAAATT+GGG + Chr1:41354068-41354087 MsG0180002603.01.T01:CDS 25.0%
! CAGTACAGAAAAATAAAAAC+AGG + Chr1:41352028-41352047 MsG0180002603.01.T01:intron 25.0%
! GAATAAGAAAACATTATGTC+TGG - Chr1:41351199-41351218 None:intergenic 25.0%
! GATTCTCGAATTAAAAATCA+TGG + Chr1:41352952-41352971 MsG0180002603.01.T01:intron 25.0%
! GTTATCCTCATTGTTATATT+TGG + Chr1:41354184-41354203 MsG0180002603.01.T01:CDS 25.0%
! TATTCTAGACACTTTCAAAT+TGG + Chr1:41354067-41354086 MsG0180002603.01.T01:CDS 25.0%
! TGAATACGTTTATGTATGTT+AGG + Chr1:41353404-41353423 MsG0180002603.01.T01:intron 25.0%
! TGATGAAATACCATTTGAAA+AGG + Chr1:41350984-41351003 MsG0180002603.01.T01:intron 25.0%
! TTAACTTCAACAATACAAGA+AGG - Chr1:41351801-41351820 None:intergenic 25.0%
! TTCAACCAAATATAACAATG+AGG - Chr1:41354192-41354211 None:intergenic 25.0%
!! AATTTTGCTCAAATCTTGAT+GGG + Chr1:41353010-41353029 MsG0180002603.01.T01:intron 25.0%
!! ATTACTTGTTAAGTTTGTCA+TGG + Chr1:41352605-41352624 MsG0180002603.01.T01:intron 25.0%
!! ATTTTATTCTTAATGACCCA+AGG - Chr1:41354134-41354153 None:intergenic 25.0%
!! TATTTTTCTGTACTGTGTTT+GGG - Chr1:41352023-41352042 None:intergenic 25.0%
!! TTTTGATCTTTTCAGCTTTA+GGG + Chr1:41352420-41352439 MsG0180002603.01.T01:intron 25.0%
!!! GTATTGTTTTTATATGATGC+TGG + Chr1:41352638-41352657 MsG0180002603.01.T01:intron 25.0%
!!! TAGTTGTTCTTTTTGAGTTT+AGG + Chr1:41354159-41354178 MsG0180002603.01.T01:CDS 25.0%
!!! TTATTTTTCTGTACTGTGTT+TGG - Chr1:41352024-41352043 None:intergenic 25.0%
AAAAAAAATCACACGATGTG+AGG - Chr1:41351778-41351797 None:intergenic 30.0%
AAACGAAGAAAGAAAGACTT+CGG - Chr1:41352880-41352899 None:intergenic 30.0%
AAGGAAACAACTAGTATTCT+TGG + Chr1:41352382-41352401 MsG0180002603.01.T01:intron 30.0%
AATGTAACATATGACTTTGG+AGG + Chr1:41353959-41353978 MsG0180002603.01.T01:intron 30.0%
AATTGCAAAATTTGTACCAC+AGG + Chr1:41352708-41352727 MsG0180002603.01.T01:intron 30.0%
ACTATGTAGTTTACCAATGA+TGG + Chr1:41353443-41353462 MsG0180002603.01.T01:intron 30.0%
ACTCAAAAAGAACAACTACT+TGG - Chr1:41354157-41354176 None:intergenic 30.0%
AGAAAACTCAAATCATAGGA+AGG - Chr1:41352514-41352533 None:intergenic 30.0%
ATAACCCTAAAACAACATCT+AGG + Chr1:41352909-41352928 MsG0180002603.01.T01:intron 30.0%
ATACCACACTTATTACATTG+AGG - Chr1:41351747-41351766 None:intergenic 30.0%
ATACTTGTGTAACACTTCTT+TGG + Chr1:41352462-41352481 MsG0180002603.01.T01:intron 30.0%
CTAAAGCTGAAAAGATCAAA+AGG - Chr1:41352421-41352440 None:intergenic 30.0%
CTATGTAGTTTACCAATGAT+GGG + Chr1:41353444-41353463 MsG0180002603.01.T01:intron 30.0%
TAATACCCCGATCATTTATA+TGG + Chr1:41352102-41352121 MsG0180002603.01.T01:intron 30.0%
TATCACCATATAAATGATCG+GGG - Chr1:41352110-41352129 None:intergenic 30.0%
TCATGTTGTTAAAAAGCCAA+TGG + Chr1:41350946-41350965 MsG0180002603.01.T01:CDS 30.0%
TTTAACAACATGATCCTTCT+TGG - Chr1:41350939-41350958 None:intergenic 30.0%
! AATCAAGCTTACGTTTTCAA+AGG + Chr1:41351360-41351379 MsG0180002603.01.T01:CDS 30.0%
! ATTTTTCTGTACTGTGTTTG+GGG - Chr1:41352022-41352041 None:intergenic 30.0%
! CAAGAGAAATGAGTATTTTG+GGG - Chr1:41352219-41352238 None:intergenic 30.0%
! CAATCTACTACCTTTTCAAA+TGG - Chr1:41350997-41351016 None:intergenic 30.0%
! CTTTTGATCTTTTCAGCTTT+AGG + Chr1:41352419-41352438 MsG0180002603.01.T01:intron 30.0%
! GAACCATTAGAATGTGTTTT+GGG + Chr1:41352680-41352699 MsG0180002603.01.T01:intron 30.0%
! GAATTTTGCTCAAATCTTGA+TGG + Chr1:41353009-41353028 MsG0180002603.01.T01:intron 30.0%
! GCAAGAGAAATGAGTATTTT+GGG - Chr1:41352220-41352239 None:intergenic 30.0%
! TACCTTAGATAGGTTTTCAT+CGG + Chr1:41353286-41353305 MsG0180002603.01.T01:intron 30.0%
! TGCAAGAGAAATGAGTATTT+TGG - Chr1:41352221-41352240 None:intergenic 30.0%
! TTTTCTTAGTGAGGAAGTTA+TGG + Chr1:41352528-41352547 MsG0180002603.01.T01:intron 30.0%
!! ATCACTTATTGATGATGGTT+AGG - Chr1:41352315-41352334 None:intergenic 30.0%
!! TATTCTAGAAGTGCTTACAT+TGG + Chr1:41351656-41351675 MsG0180002603.01.T01:intron 30.0%
!! TCACTTATTGATGATGGTTA+GGG - Chr1:41352314-41352333 None:intergenic 30.0%
!! TGATTTGAGTTTTCTTAGTG+AGG + Chr1:41352519-41352538 MsG0180002603.01.T01:intron 30.0%
!! TTTTAAAAGTTTGCTCGGTA+CGG + Chr1:41351290-41351309 MsG0180002603.01.T01:CDS 30.0%
!!! AAGGGAATGGTTTTAGAAAA+TGG + Chr1:41351150-41351169 MsG0180002603.01.T01:CDS 30.0%
!!! ACTTTTAAAACCAGAACGAA+TGG - Chr1:41351280-41351299 None:intergenic 30.0%
!!! ATTGCCTAGATGTTGTTTTA+GGG - Chr1:41352916-41352935 None:intergenic 30.0%
!!! GAATATCGATTTTCTAGAGA+GGG - Chr1:41352285-41352304 None:intergenic 30.0%
!!! TCTGGTTTTAAAAGTTTGCT+CGG + Chr1:41351285-41351304 MsG0180002603.01.T01:CDS 30.0%
!!! TGAATATCGATTTTCTAGAG+AGG - Chr1:41352286-41352305 None:intergenic 30.0%
AACCGATGAAAACCTATCTA+AGG - Chr1:41353291-41353310 None:intergenic 35.0%
AAGAAATGGAAAACCACCAT+TGG - Chr1:41350965-41350984 None:intergenic 35.0%
AAGAGGTAATCAGAATGTTG+AGG + Chr1:41354283-41354302 MsG0180002603.01.T01:CDS 35.0%
AAGATACTCTAATGCATCGA+GGG - Chr1:41353524-41353543 None:intergenic 35.0%
AGGAAATGAGTATGTTCGTA+TGG + Chr1:41351221-41351240 MsG0180002603.01.T01:CDS 35.0%
ATAGGATCATCGTACGTAAA+AGG - Chr1:41353603-41353622 None:intergenic 35.0%
CATAGGAAGGTTAACTAACT+AGG - Chr1:41352501-41352520 None:intergenic 35.0%
CTTGAGTAACTAGACTTGTA+TGG + Chr1:41353918-41353937 MsG0180002603.01.T01:intron 35.0%
GAAAAAACCTAACCCATCAT+TGG - Chr1:41353459-41353478 None:intergenic 35.0%
GAAATGCAGTATCAATGACT+TGG - Chr1:41350844-41350863 None:intergenic 35.0%
GTATCGTTGTTACCTTAGAT+AGG + Chr1:41353276-41353295 MsG0180002603.01.T01:intron 35.0%
GTTACGTGTTCAAGAAGAAA+AGG + Chr1:41350885-41350904 MsG0180002603.01.T01:CDS 35.0%
GTTCAAGAAGAAAAGGTTTG+AGG + Chr1:41350892-41350911 MsG0180002603.01.T01:CDS 35.0%
TAGACTTGTATGGCAAACTT+TGG + Chr1:41353928-41353947 MsG0180002603.01.T01:intron 35.0%
TCAAATTGGGCGTTACAATT+TGG + Chr1:41354081-41354100 MsG0180002603.01.T01:CDS 35.0%
TGACCCAAAACACATTCTAA+TGG - Chr1:41352686-41352705 None:intergenic 35.0%
TGATGAGACATAATGTCTCA+GGG - Chr1:41353759-41353778 None:intergenic 35.0%
TGTAACACTTCTTTGGTACA+AGG + Chr1:41352469-41352488 MsG0180002603.01.T01:intron 35.0%
TGTGGATAAGTTTACCTAGA+CGG - Chr1:41353646-41353665 None:intergenic 35.0%
TGTTGTTAAAAAGCCAATGG+TGG + Chr1:41350949-41350968 MsG0180002603.01.T01:intron 35.0%
TTACAATTTGGTATCAGAGC+AGG + Chr1:41354093-41354112 MsG0180002603.01.T01:CDS 35.0%
TTACATGTCAAGGAGATCAA+GGG - Chr1:41353567-41353586 None:intergenic 35.0%
TTTATTCTCGACAAGCTATG+TGG - Chr1:41353074-41353093 None:intergenic 35.0%
! AACTCAAGGGGTTTTCATTA+GGG + Chr1:41353208-41353227 MsG0180002603.01.T01:intron 35.0%
! AATTTTGTAATTCGAACGCG+AGG + Chr1:41352174-41352193 MsG0180002603.01.T01:intron 35.0%
! ATCACTCTCCTTATTTGTTC+AGG + Chr1:41353775-41353794 MsG0180002603.01.T01:intron 35.0%
! ATGTCTAGTTTACAACCTGA+CGG - Chr1:41353682-41353701 None:intergenic 35.0%
! CGTATTGATATTTCCAACGA+AGG + Chr1:41351396-41351415 MsG0180002603.01.T01:CDS 35.0%
! GGAACCATTAGAATGTGTTT+TGG + Chr1:41352679-41352698 MsG0180002603.01.T01:intron 35.0%
! GTTTGTAGTTCTGTTTCCTT+AGG - Chr1:41351996-41352015 None:intergenic 35.0%
!! AGGTTTTCATCGGTTAGATA+GGG + Chr1:41353296-41353315 MsG0180002603.01.T01:intron 35.0%
!! CACTTATTGATGATGGTTAG+GGG - Chr1:41352313-41352332 None:intergenic 35.0%
!! TAGGTTTTCATCGGTTAGAT+AGG + Chr1:41353295-41353314 MsG0180002603.01.T01:intron 35.0%
!! TAGTTTACCAATGATGGGTT+AGG + Chr1:41353449-41353468 MsG0180002603.01.T01:intron 35.0%
!!! CATTGCCTAGATGTTGTTTT+AGG - Chr1:41352917-41352936 None:intergenic 35.0%
!!! TAGGTTTTTTCCTGTTCGAT+CGG + Chr1:41353468-41353487 MsG0180002603.01.T01:intron 35.0%
!!! TCTTTTCAGCTTTAGGGTTT+TGG + Chr1:41352426-41352445 MsG0180002603.01.T01:intron 35.0%
!!! TGTTTTGTTTCAGGCGTTTT+CGG - Chr1:41351959-41351978 None:intergenic 35.0%
AAACCATTCCCTTGAGACAA+TGG - Chr1:41351143-41351162 None:intergenic 40.0%
AAGGAATGATGAGCTAGTGA+AGG + Chr1:41352363-41352382 MsG0180002603.01.T01:intron 40.0%
ACCATGTTCCATTGTCTCAA+GGG + Chr1:41351132-41351151 MsG0180002603.01.T01:CDS 40.0%
ACTAGACATGTGATAACCGT+AGG + Chr1:41353693-41353712 MsG0180002603.01.T01:intron 40.0%
ACTCATTACACCATTCGTTC+TGG + Chr1:41351267-41351286 MsG0180002603.01.T01:CDS 40.0%
AGCAAGCAAGCAAACATGTA+AGG + Chr1:41352344-41352363 MsG0180002603.01.T01:intron 40.0%
AGCTAATAGCGAGTTTCTTC+GGG - Chr1:41352734-41352753 None:intergenic 40.0%
AGTAAAGCGGTATCAGAATC+CGG - Chr1:41351090-41351109 None:intergenic 40.0%
CAAGATACTCTAATGCATCG+AGG - Chr1:41353525-41353544 None:intergenic 40.0%
CAGCTAATCTAACACCAAGT+TGG - Chr1:41353862-41353881 None:intergenic 40.0%
CATACGTATAATCAACCGTC+AGG + Chr1:41353664-41353683 MsG0180002603.01.T01:intron 40.0%
CATTCTGATTACCTCTTGAC+CGG - Chr1:41354280-41354299 None:intergenic 40.0%
CCTGTGAACCTGAACAAATA+AGG - Chr1:41353786-41353805 None:intergenic 40.0%
CGCTAATAGCGAATTTCTTC+AGG + Chr1:41352761-41352780 MsG0180002603.01.T01:CDS 40.0%
CGCTAATGGCGAAAATTTCT+GGG - Chr1:41352793-41352812 None:intergenic 40.0%
CTTACATGTCAAGGAGATCA+AGG - Chr1:41353568-41353587 None:intergenic 40.0%
GAATAGACGCTGCAATTAAG+TGG + Chr1:41351172-41351191 MsG0180002603.01.T01:CDS 40.0%
GACGGTTGATTATACGTATG+TGG - Chr1:41353664-41353683 None:intergenic 40.0%
GAGCTAATAGCGAGTTTCTT+CGG - Chr1:41352735-41352754 None:intergenic 40.0%
GAGGTTGTGAATTATGCTCT+GGG + Chr1:41350911-41350930 MsG0180002603.01.T01:CDS 40.0%
GCTCCTCAATGTAATAAGTG+TGG + Chr1:41351741-41351760 MsG0180002603.01.T01:intron 40.0%
GTGATGAGACATAATGTCTC+AGG - Chr1:41353760-41353779 None:intergenic 40.0%
GTTAGAGATGAGATAGGCAT+GGG + Chr1:41353032-41353051 MsG0180002603.01.T01:intron 40.0%
TAAAGCTGGTCCATGATGAA+TGG + Chr1:41351442-41351461 MsG0180002603.01.T01:intron 40.0%
TAACCCGGATGCTAATATGT+GGG + Chr1:41354313-41354332 MsG0180002603.01.T01:CDS 40.0%
TACATGTCAAGGAGATCAAG+GGG - Chr1:41353566-41353585 None:intergenic 40.0%
TACCATGTTCCATTGTCTCA+AGG + Chr1:41351131-41351150 MsG0180002603.01.T01:CDS 40.0%
TACGTACGATGATCCTATGA+TGG + Chr1:41353605-41353624 MsG0180002603.01.T01:intron 40.0%
TCACACTAGAGTGAACTCAA+GGG + Chr1:41353195-41353214 MsG0180002603.01.T01:intron 40.0%
TCTGTTTCCTTAGGTGTGTT+GGG - Chr1:41351987-41352006 None:intergenic 40.0%
TCTTGCAACTTTCTCTCTCT+AGG + Chr1:41352234-41352253 MsG0180002603.01.T01:intron 40.0%
TGAGGTTGTGAATTATGCTC+TGG + Chr1:41350910-41350929 MsG0180002603.01.T01:CDS 40.0%
TGCCAAAATAGATTTCGCTC+CGG + Chr1:41351068-41351087 MsG0180002603.01.T01:CDS 40.0%
TGTCAATGGTAGAGTAAAGC+TGG + Chr1:41351428-41351447 MsG0180002603.01.T01:intron 40.0%
TGTGCGCTAAAACTGATAAC+TGG - Chr1:41354041-41354060 None:intergenic 40.0%
TGTTGAGGACAATGTTAACC+CGG + Chr1:41354298-41354317 MsG0180002603.01.T01:CDS 40.0%
TTAACCCGGATGCTAATATG+TGG + Chr1:41354312-41354331 MsG0180002603.01.T01:CDS 40.0%
TTCACACTAGAGTGAACTCA+AGG + Chr1:41353194-41353213 MsG0180002603.01.T01:intron 40.0%
TTCTGTTTCCTTAGGTGTGT+TGG - Chr1:41351988-41352007 None:intergenic 40.0%
! AACATGGTAGTGATTGGAAC+AGG - Chr1:41351120-41351139 None:intergenic 40.0%
! ACATGGTAGTGATTGGAACA+GGG - Chr1:41351119-41351138 None:intergenic 40.0%
! ATCCGGAGCGAAATCTATTT+TGG - Chr1:41351073-41351092 None:intergenic 40.0%
! CAATGGAACATGGTAGTGAT+TGG - Chr1:41351126-41351145 None:intergenic 40.0%
! CCTTATTTGTTCAGGTTCAC+AGG + Chr1:41353783-41353802 MsG0180002603.01.T01:intron 40.0%
! CTCGATGCATTAGAGTATCT+TGG + Chr1:41353523-41353542 MsG0180002603.01.T01:intron 40.0%
! GAACTCAAGGGGTTTTCATT+AGG + Chr1:41353207-41353226 MsG0180002603.01.T01:intron 40.0%
! TTTGGATTGATCGTGTTGCT+TGG + Chr1:41353834-41353853 MsG0180002603.01.T01:intron 40.0%
!! TCTGTTGTTTCTGTCATGTG+CGG - Chr1:41352073-41352092 None:intergenic 40.0%
!! TGATGGGTTAGAGATGAGAT+AGG + Chr1:41353026-41353045 MsG0180002603.01.T01:intron 40.0%
!! TGGATGTTTTTGTGCATTGC+AGG + Chr1:41352658-41352677 MsG0180002603.01.T01:intron 40.0%
!! TTATTGATGATGGTTAGGGG+AGG - Chr1:41352310-41352329 None:intergenic 40.0%
!! TTTAATAGGCTCTGAAGAGC+AGG - Chr1:41351468-41351487 None:intergenic 40.0%
!!! TAGGGTTTTGGTTAGAGCTT+AGG + Chr1:41352438-41352457 MsG0180002603.01.T01:intron 40.0%
AACGAGATAGACTTCGCATG+AGG + Chr1:41353232-41353251 MsG0180002603.01.T01:intron 45.0%
ACAGTTAGAGCGAGAATGTC+CGG + Chr1:41354236-41354255 MsG0180002603.01.T01:CDS 45.0%
ACGAGATAGACTTCGCATGA+GGG + Chr1:41353233-41353252 MsG0180002603.01.T01:intron 45.0%
AGGGAGTTCTATCTAACCCT+AGG - Chr1:41353740-41353759 None:intergenic 45.0%
ATACTCCCTCTATGTCGTAC+GGG - Chr1:41353260-41353279 None:intergenic 45.0%
ATGCTCAGTCCCAACAACAA+TGG + Chr1:41354396-41354415 MsG0180002603.01.T01:CDS 45.0%
ATGCTCATCACGCATACATG+TGG + Chr1:41351691-41351710 MsG0180002603.01.T01:intron 45.0%
ATTCTCGACAAGCTATGTGG+AGG - Chr1:41353071-41353090 None:intergenic 45.0%
CACACTAGAGTGAACTCAAG+GGG + Chr1:41353196-41353215 MsG0180002603.01.T01:intron 45.0%
GAAGGCGACTGTATTGTCAA+TGG + Chr1:41351414-41351433 MsG0180002603.01.T01:CDS 45.0%
GATACTCCCTCTATGTCGTA+CGG - Chr1:41353261-41353280 None:intergenic 45.0%
GCACATGACAGAAACAACAG+AGG + Chr1:41352072-41352091 MsG0180002603.01.T01:intron 45.0%
GCCAGAGAAAATGATCGCTT+CGG - Chr1:41351040-41351059 None:intergenic 45.0%
GCGCGCATTTAAACGTTAAC+AGG - Chr1:41352138-41352157 None:intergenic 45.0%
GCGCTAATGGCGAAAATTTC+TGG - Chr1:41352794-41352813 None:intergenic 45.0%
GGTTAGAGATGAGATAGGCA+TGG + Chr1:41353031-41353050 MsG0180002603.01.T01:intron 45.0%
GGTTAGATAGGGATTGTGCT+CGG + Chr1:41353307-41353326 MsG0180002603.01.T01:intron 45.0%
GTGCATGCTAGAACCATCAT+AGG - Chr1:41353621-41353640 None:intergenic 45.0%
GTTAGATAGGGATTGTGCTC+GGG + Chr1:41353308-41353327 MsG0180002603.01.T01:intron 45.0%
GTTCCATTGTCTCAAGGGAA+TGG + Chr1:41351137-41351156 MsG0180002603.01.T01:CDS 45.0%
TAGTTGCAGCCCATTGTTGT+TGG - Chr1:41354409-41354428 None:intergenic 45.0%
TCACAGGTCTCTCGTGTAAA+AGG + Chr1:41353799-41353818 MsG0180002603.01.T01:intron 45.0%
TCCCTTGAGACAATGGAACA+TGG - Chr1:41351136-41351155 None:intergenic 45.0%
TCTGATACCGCTTTACTCGA+TGG + Chr1:41351093-41351112 MsG0180002603.01.T01:CDS 45.0%
TGCTCAGTCCCAACAACAAT+GGG + Chr1:41354397-41354416 MsG0180002603.01.T01:CDS 45.0%
! AACTTTTACGGAAAGCCCCA+GGG - Chr1:41353343-41353362 None:intergenic 45.0%
! ACCGAAGCGATCATTTTCTC+TGG + Chr1:41351036-41351055 MsG0180002603.01.T01:CDS 45.0%
! AGTTGCAGCCCATTGTTGTT+GGG - Chr1:41354408-41354427 None:intergenic 45.0%
! CTCGGTACGGTCTTTGAAAA+TGG + Chr1:41351303-41351322 MsG0180002603.01.T01:CDS 45.0%
!! ATGTTGGTCCATTCTGAGGT+CGG + Chr1:41352845-41352864 MsG0180002603.01.T01:intron 45.0%
!! CGAACGCGAGGAGTATTTAA+GGG + Chr1:41352186-41352205 MsG0180002603.01.T01:intron 45.0%
!! CTGTTGTTTCTGTCATGTGC+GGG - Chr1:41352072-41352091 None:intergenic 45.0%
!! GATTGTGCCTTTGAGACAGA+AGG + Chr1:41351012-41351031 MsG0180002603.01.T01:intron 45.0%
!! TCGAACGCGAGGAGTATTTA+AGG + Chr1:41352185-41352204 MsG0180002603.01.T01:intron 45.0%
!!! TGGGTGGCTTGTTTTGTTTC+AGG - Chr1:41351968-41351987 None:intergenic 45.0%
AAATGCGCGCGTCGAAGATT+AGG + Chr1:41352148-41352167 MsG0180002603.01.T01:intron 50.0%
AACAGGGCCATCGAGTAAAG+CGG - Chr1:41351103-41351122 None:intergenic 50.0%
AATGCGCGCGTCGAAGATTA+GGG + Chr1:41352149-41352168 MsG0180002603.01.T01:intron 50.0%
AGAGATGAGATAGGCATGGG+AGG + Chr1:41353035-41353054 MsG0180002603.01.T01:intron 50.0%
ATTAGCGCAGCTCTCTGGAT+GGG + Chr1:41352806-41352825 MsG0180002603.01.T01:CDS 50.0%
CCTAGGCTAGTGACAACCTT+GGG - Chr1:41353723-41353742 None:intergenic 50.0%
CGTCTCTATACCGATCGAAC+AGG - Chr1:41353481-41353500 None:intergenic 50.0%
CTAGGCTAGTGACAACCTTG+GGG - Chr1:41353722-41353741 None:intergenic 50.0%
GAAGAGCAGGCCATTCATCA+TGG - Chr1:41351455-41351474 None:intergenic 50.0%
GACAATACAGTCGCCTTCGT+TGG - Chr1:41351412-41351431 None:intergenic 50.0%
GTCGTTTCAGATCGTGCCTT+GGG + Chr1:41354115-41354134 MsG0180002603.01.T01:CDS 50.0%
GTTTCCTTAGGTGTGTTGGG+TGG - Chr1:41351984-41352003 None:intergenic 50.0%
TCTAGCATGCACTACCGTCT+AGG + Chr1:41353629-41353648 MsG0180002603.01.T01:intron 50.0%
TGCGCCCACATATTAGCATC+CGG - Chr1:41354320-41354339 None:intergenic 50.0%
TGGCATGTTGGTCCATTCTG+AGG + Chr1:41352841-41352860 MsG0180002603.01.T01:CDS 50.0%
TGGGCTGCAACTATGCAACA+AGG + Chr1:41354416-41354435 MsG0180002603.01.T01:CDS 50.0%
! CAACTTTTACGGAAAGCCCC+AGG - Chr1:41353344-41353363 None:intergenic 50.0%
! CCAACATGCCAAAAGCATGC+TGG - Chr1:41352832-41352851 None:intergenic 50.0%
! CCAAGGTTGTCACTAGCCTA+GGG + Chr1:41353721-41353740 MsG0180002603.01.T01:intron 50.0%
! CCAGCATGCTTTTGGCATGT+TGG + Chr1:41352829-41352848 MsG0180002603.01.T01:CDS 50.0%
! TTCTGTACTGTGTTTGGGGC+TGG - Chr1:41352018-41352037 None:intergenic 50.0%
!! CGTGTTGCTTGGATCCAACT+TGG + Chr1:41353845-41353864 MsG0180002603.01.T01:intron 50.0%
!! TTATGCTCTGGGAGCCAAGA+AGG + Chr1:41350922-41350941 MsG0180002603.01.T01:CDS 50.0%
!! TTCGGTGCCTTCTGTCTCAA+AGG - Chr1:41351022-41351041 None:intergenic 50.0%
AGAATGTCCGGAGCACGAAG+CGG + Chr1:41354248-41354267 MsG0180002603.01.T01:CDS 55.0%
AGGGACCCGTACGACATAGA+GGG + Chr1:41353252-41353271 MsG0180002603.01.T01:intron 55.0%
ATGCACCACCGACCTCAGAA+TGG - Chr1:41352856-41352875 None:intergenic 55.0%
ATGCGCGCGTCGAAGATTAG+GGG + Chr1:41352150-41352169 MsG0180002603.01.T01:intron 55.0%
CAAGCCACCCAACACACCTA+AGG + Chr1:41351977-41351996 MsG0180002603.01.T01:intron 55.0%
CATCCAGAGAGCTGCGCTAA+TGG - Chr1:41352807-41352826 None:intergenic 55.0%
CATTAGCGCAGCTCTCTGGA+TGG + Chr1:41352805-41352824 MsG0180002603.01.T01:CDS 55.0%
CCCTAGGCTAGTGACAACCT+TGG - Chr1:41353724-41353743 None:intergenic 55.0%
GACAACCTTGGGGACTCCTA+CGG - Chr1:41353712-41353731 None:intergenic 55.0%
GATAACCGTAGGAGTCCCCA+AGG + Chr1:41353704-41353723 MsG0180002603.01.T01:intron 55.0%
GCGCCCACATATTAGCATCC+GGG - Chr1:41354319-41354338 None:intergenic 55.0%
GGTCGTTTCAGATCGTGCCT+TGG + Chr1:41354114-41354133 MsG0180002603.01.T01:CDS 55.0%
! CCCAAGGTTGTCACTAGCCT+AGG + Chr1:41353720-41353739 MsG0180002603.01.T01:intron 55.0%
! TGGATGGGCCAGCATGCTTT+TGG + Chr1:41352821-41352840 MsG0180002603.01.T01:CDS 55.0%
! TTTTACGGAAAGCCCCAGGG+TGG - Chr1:41353340-41353359 None:intergenic 55.0%
!! TTGGTCCATTCTGAGGTCGG+TGG + Chr1:41352848-41352867 MsG0180002603.01.T01:intron 55.0%
AGCGAGTTTCTTCGGGCCTG+TGG - Chr1:41352727-41352746 None:intergenic 60.0%
CTCGGGTTTACTCCACCCTG+GGG + Chr1:41353325-41353344 MsG0180002603.01.T01:intron 60.0%
GAGGGACCCGTACGACATAG+AGG + Chr1:41353251-41353270 MsG0180002603.01.T01:intron 60.0%
GCTCGGGTTTACTCCACCCT+GGG + Chr1:41353324-41353343 MsG0180002603.01.T01:intron 60.0%
TCGCCATTAGCGCAGCTCTC+TGG + Chr1:41352801-41352820 MsG0180002603.01.T01:CDS 60.0%
TGCTCGGGTTTACTCCACCC+TGG + Chr1:41353323-41353342 MsG0180002603.01.T01:intron 60.0%
AGCGGACGAGGCCGGTCAAG+AGG + Chr1:41354266-41354285 MsG0180002603.01.T01:CDS 70.0%
GAGCACGAAGCGGACGAGGC+CGG + Chr1:41354258-41354277 MsG0180002603.01.T01:CDS 70.0%
GCCTCGTCCGCTTCGTGCTC+CGG - Chr1:41354258-41354277 None:intergenic 70.0%
TCCGGAGCACGAAGCGGACG+AGG + Chr1:41354254-41354273 MsG0180002603.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 41350833 41354451 41350833 ID=MsG0180002603.01;Name=MsG0180002603.01
Chr1 mRNA 41350833 41354451 41350833 ID=MsG0180002603.01.T01;Parent=MsG0180002603.01;Name=MsG0180002603.01.T01;_AED=0.56;_eAED=0.56;_QI=0|0|0|0.75|1|1|4|0|359
Chr1 exon 41350833 41350967 41350833 ID=MsG0180002603.01.T01:exon:21420;Parent=MsG0180002603.01.T01
Chr1 exon 41351027 41351435 41351027 ID=MsG0180002603.01.T01:exon:21419;Parent=MsG0180002603.01.T01
Chr1 exon 41352730 41352862 41352730 ID=MsG0180002603.01.T01:exon:21418;Parent=MsG0180002603.01.T01
Chr1 exon 41354049 41354451 41354049 ID=MsG0180002603.01.T01:exon:21417;Parent=MsG0180002603.01.T01
Chr1 CDS 41350833 41350967 41350833 ID=MsG0180002603.01.T01:cds;Parent=MsG0180002603.01.T01
Chr1 CDS 41351027 41351435 41351027 ID=MsG0180002603.01.T01:cds;Parent=MsG0180002603.01.T01
Chr1 CDS 41352730 41352862 41352730 ID=MsG0180002603.01.T01:cds;Parent=MsG0180002603.01.T01
Chr1 CDS 41354049 41354451 41354049 ID=MsG0180002603.01.T01:cds;Parent=MsG0180002603.01.T01
Gene Sequence

>MsG0180002603.01.T01

ATGTCAAGCCAAGTCATTGATACTGCATTTCGTTCATCTAAGCTCTATGAATGTTACGTGTTCAAGAAGAAAAGGTTTGAGGTTGTGAATTATGCTCTGGGAGCCAAGAAGGATCATGTTGTTAAAAAGCCAATGACAGAAGGCACCGAAGCGATCATTTTCTCTGGCAATAAACGTGCCAAAATAGATTTCGCTCCGGATTCTGATACCGCTTTACTCGATGGCCCTGTTCCAATCACTACCATGTTCCATTGTCTCAAGGGAATGGTTTTAGAAAATGGAATAGACGCTGCAATTAAGTGGACCAGACATAATGTTTTCTTATTCAAAGGAAATGAGTATGTTCGTATGGACTATCACAGTAAGACTATTGTGACTCATTACACCATTCGTTCTGGTTTTAAAAGTTTGCTCGGTACGGTCTTTGAAAATGGAATTGATGCAGCAGCATTTGCTTCTCATGTTGCGAATCAAGCTTACGTTTTCAAAGGAGAATACTATGCACGTATTGATATTTCCAACGAAGGCGACTGTATTGTCAATGGCCCGAAGAAACTCGCTATTAGCTCAATTTTCGCTAATAGCGAATTTCTTCAGGCAGCTGCCCAGAAATTTTCGCCATTAGCGCAGCTCTCTGGATGGGCCAGCATGCTTTTGGCATGTTGGTCCATTCTGAGTTTTAGCGCACATTTGAATATTCTAGACACTTTCAAATTGGGCGTTACAATTTGGTATCAGAGCAGGTCGTTTCAGATCGTGCCTTGGGTCATTAAGAATAAAATCCAAGTAGTTGTTCTTTTTGAGTTTAGGATGTTATCCTCATTGTTATATTTGGTTGAAATTGATCACTTTGACTTAAATATGACAGTTAGAGCGAGAATGTCCGGAGCACGAAGCGGACGAGGCCGGTCAAGAGGTAATCAGAATGTTGAGGACAATGTTAACCCGGATGCTAATATGTGGGCGCAAATGATGCAACAGAATCAACAGATGATGCAATTGATGCAACAACAGATTCAGCAGAATGCTCAGTCCCAACAACAATGGGCTGCAACTATGCAACAAGGAATTCATCAATAG
Protein sequence

>MsG0180002603.01.T01

MSSQVIDTAFRSSKLYECYVFKKKRFEVVNYALGAKKDHVVKKPMTEGTEAIIFSGNKRAKIDFAPDSDTALLDGPVPITTMFHCLKGMVLENGIDAAIKWTRHNVFLFKGNEYVRMDYHSKTIVTHYTIRSGFKSLLGTVFENGIDAAAFASHVANQAYVFKGEYYARIDISNEGDCIVNGPKKLAISSIFANSEFLQAAAQKFSPLAQLSGWASMLLACWSILSFSAHLNILDTFKLGVTIWYQSRSFQIVPWVIKNKIQVVVLFEFRMLSSLLYLVEIDHFDLNMTVRARMSGARSGRGRSRGNQNVEDNVNPDANMWAQMMQQNQQMMQLMQQQIQQNAQSQQQWAATMQQGIHQ*