Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003410.01.T01 | XP_013468064.1 | 86.948 | 498 | 24 | 2 | 1 | 496 | 1 | 459 | 0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003410.01.T01 | Q8GYY1 | 50.847 | 295 | 102 | 3 | 27 | 317 | 35 | 290 | 7.28E-90 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003410.01.T01 | A0A072VKE1 | 86.948 | 498 | 24 | 2 | 1 | 496 | 1 | 459 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003410.01 | MsG0380016661.01 | 0.820867 | 5.465189e-53 | 4.376485e-50 |
| MsG0180003410.01 | MsG0480020869.01 | 0.814026 | 1.899660e-51 | 1.260490e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003410.01.T01 | MTR_1g061170 | 86.948 | 498 | 24 | 2 | 1 | 496 | 1 | 459 | 0.0 | 862 |
| MsG0180003410.01.T01 | MTR_1g061170 | 94.587 | 351 | 19 | 0 | 146 | 496 | 14 | 364 | 0.0 | 686 |
| MsG0180003410.01.T01 | MTR_1g061170 | 93.640 | 283 | 18 | 0 | 214 | 496 | 1 | 283 | 0.0 | 550 |
| MsG0180003410.01.T01 | MTR_5g029680 | 42.361 | 288 | 113 | 4 | 31 | 304 | 16 | 264 | 4.21e-66 | 221 |
| MsG0180003410.01.T01 | MTR_3g104550 | 36.962 | 395 | 181 | 11 | 33 | 422 | 32 | 363 | 6.71e-65 | 215 |
| MsG0180003410.01.T01 | MTR_1g102860 | 43.494 | 269 | 106 | 5 | 25 | 286 | 15 | 244 | 3.00e-62 | 206 |
| MsG0180003410.01.T01 | MTR_7g095680 | 41.077 | 297 | 128 | 5 | 13 | 302 | 16 | 272 | 1.47e-61 | 206 |
| MsG0180003410.01.T01 | MTR_4g077970 | 36.550 | 342 | 151 | 7 | 45 | 362 | 10 | 309 | 4.56e-61 | 208 |
| MsG0180003410.01.T01 | MTR_1g071360 | 42.358 | 229 | 84 | 3 | 34 | 262 | 19 | 199 | 3.91e-50 | 175 |
| MsG0180003410.01.T01 | MTR_1g071360 | 42.358 | 229 | 84 | 3 | 34 | 262 | 16 | 196 | 8.97e-50 | 175 |
| MsG0180003410.01.T01 | MTR_2g100680 | 35.632 | 261 | 116 | 3 | 23 | 283 | 18 | 226 | 4.63e-43 | 159 |
| MsG0180003410.01.T01 | MTR_6g043060 | 34.855 | 241 | 111 | 4 | 45 | 283 | 20 | 216 | 5.32e-40 | 147 |
| MsG0180003410.01.T01 | MTR_8g087540 | 35.616 | 219 | 100 | 2 | 43 | 259 | 8 | 187 | 1.84e-39 | 147 |
| MsG0180003410.01.T01 | MTR_8g083100 | 31.180 | 356 | 173 | 11 | 48 | 386 | 23 | 323 | 2.30e-39 | 149 |
| MsG0180003410.01.T01 | MTR_8g105780 | 33.441 | 311 | 149 | 7 | 45 | 346 | 20 | 281 | 4.26e-39 | 146 |
| MsG0180003410.01.T01 | MTR_2g100670 | 35.965 | 228 | 105 | 2 | 47 | 274 | 33 | 219 | 2.35e-38 | 142 |
| MsG0180003410.01.T01 | MTR_2g100670 | 35.965 | 228 | 105 | 2 | 47 | 274 | 141 | 327 | 1.05e-37 | 143 |
| MsG0180003410.01.T01 | MTR_6g086805 | 33.333 | 237 | 117 | 3 | 45 | 281 | 9 | 204 | 2.31e-37 | 140 |
| MsG0180003410.01.T01 | MTR_3g101870 | 48.201 | 139 | 33 | 1 | 47 | 185 | 24 | 123 | 4.61e-33 | 129 |
| MsG0180003410.01.T01 | MTR_2g017890 | 30.472 | 233 | 111 | 3 | 45 | 272 | 13 | 199 | 3.98e-32 | 127 |
| MsG0180003410.01.T01 | MTR_5g010680 | 44.526 | 137 | 37 | 1 | 41 | 177 | 18 | 115 | 5.94e-32 | 126 |
| MsG0180003410.01.T01 | MTR_7g091370 | 36.364 | 198 | 76 | 2 | 37 | 223 | 12 | 170 | 9.64e-32 | 122 |
| MsG0180003410.01.T01 | MTR_5g017470 | 33.607 | 244 | 108 | 5 | 41 | 269 | 3 | 207 | 2.54e-31 | 122 |
| MsG0180003410.01.T01 | MTR_5g089170 | 35.149 | 202 | 71 | 3 | 41 | 221 | 19 | 181 | 3.94e-29 | 115 |
| MsG0180003410.01.T01 | MTR_0020s0020 | 43.511 | 131 | 35 | 1 | 47 | 177 | 33 | 124 | 2.64e-28 | 115 |
| MsG0180003410.01.T01 | MTR_1g100777 | 33.333 | 210 | 72 | 3 | 41 | 221 | 12 | 182 | 7.87e-28 | 113 |
| MsG0180003410.01.T01 | MTR_4g088900 | 33.516 | 182 | 77 | 3 | 47 | 224 | 33 | 174 | 2.19e-24 | 101 |
| MsG0180003410.01.T01 | MTR_4g045757 | 58.333 | 60 | 25 | 0 | 45 | 104 | 12 | 71 | 1.93e-18 | 80.1 |
| MsG0180003410.01.T01 | MTR_4g077970 | 30.909 | 165 | 95 | 4 | 214 | 362 | 1 | 162 | 5.10e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003410.01.T01 | AT5G03720 | 50.847 | 295 | 102 | 3 | 27 | 317 | 35 | 290 | 7.42e-91 | 283 |
| MsG0180003410.01.T01 | AT5G03720 | 50.847 | 295 | 102 | 3 | 27 | 317 | 35 | 290 | 7.42e-91 | 283 |
| MsG0180003410.01.T01 | AT5G16820 | 36.105 | 421 | 186 | 10 | 45 | 444 | 25 | 383 | 3.91e-64 | 216 |
| MsG0180003410.01.T01 | AT5G16820 | 36.105 | 421 | 186 | 10 | 45 | 444 | 25 | 383 | 3.91e-64 | 216 |
| MsG0180003410.01.T01 | AT1G32330 | 39.542 | 306 | 123 | 5 | 22 | 304 | 7 | 273 | 1.46e-62 | 212 |
| MsG0180003410.01.T01 | AT1G32330 | 39.542 | 306 | 123 | 5 | 22 | 304 | 7 | 273 | 1.83e-62 | 211 |
| MsG0180003410.01.T01 | AT3G02990 | 41.311 | 305 | 121 | 6 | 42 | 332 | 18 | 278 | 4.81e-61 | 207 |
| MsG0180003410.01.T01 | AT4G17750 | 39.048 | 315 | 117 | 7 | 26 | 304 | 21 | 296 | 1.06e-58 | 202 |
| MsG0180003410.01.T01 | AT3G22830 | 40.000 | 270 | 113 | 3 | 23 | 282 | 37 | 267 | 8.88e-58 | 197 |
| MsG0180003410.01.T01 | AT2G26150 | 41.961 | 255 | 101 | 4 | 34 | 281 | 31 | 245 | 3.07e-56 | 191 |
| MsG0180003410.01.T01 | AT2G26150 | 41.961 | 255 | 101 | 4 | 34 | 281 | 31 | 245 | 3.07e-56 | 191 |
| MsG0180003410.01.T01 | AT3G63350 | 41.667 | 240 | 99 | 2 | 34 | 273 | 15 | 213 | 2.04e-54 | 184 |
| MsG0180003410.01.T01 | AT3G51910 | 40.000 | 250 | 93 | 4 | 37 | 281 | 19 | 216 | 1.48e-50 | 174 |
| MsG0180003410.01.T01 | AT5G43840 | 35.789 | 285 | 123 | 6 | 32 | 313 | 4 | 231 | 1.35e-48 | 169 |
| MsG0180003410.01.T01 | AT5G54070 | 34.375 | 256 | 118 | 4 | 45 | 296 | 69 | 278 | 1.39e-43 | 157 |
| MsG0180003410.01.T01 | AT1G67970 | 35.227 | 264 | 128 | 4 | 45 | 304 | 17 | 241 | 3.66e-42 | 154 |
| MsG0180003410.01.T01 | AT4G13980 | 33.898 | 236 | 115 | 2 | 48 | 283 | 24 | 218 | 1.28e-40 | 152 |
| MsG0180003410.01.T01 | AT3G24520 | 37.445 | 227 | 82 | 5 | 45 | 271 | 15 | 181 | 1.63e-37 | 140 |
| MsG0180003410.01.T01 | AT5G45710 | 33.190 | 232 | 114 | 2 | 43 | 272 | 9 | 201 | 6.47e-35 | 134 |
| MsG0180003410.01.T01 | AT5G45710 | 33.190 | 232 | 114 | 2 | 43 | 272 | 9 | 201 | 6.47e-35 | 134 |
| MsG0180003410.01.T01 | AT4G18880 | 36.283 | 226 | 102 | 2 | 43 | 265 | 11 | 197 | 2.20e-33 | 131 |
| MsG0180003410.01.T01 | AT5G62020 | 41.667 | 144 | 45 | 1 | 41 | 184 | 17 | 121 | 1.09e-30 | 121 |
| MsG0180003410.01.T01 | AT1G46264 | 46.269 | 134 | 33 | 1 | 47 | 180 | 34 | 128 | 1.23e-30 | 122 |
| MsG0180003410.01.T01 | AT4G11660 | 43.571 | 140 | 40 | 1 | 41 | 180 | 53 | 153 | 4.29e-30 | 121 |
| MsG0180003410.01.T01 | AT4G36990 | 32.159 | 227 | 107 | 3 | 35 | 253 | 2 | 189 | 3.00e-29 | 117 |
| MsG0180003410.01.T01 | AT2G26150 | 46.154 | 143 | 69 | 3 | 146 | 281 | 49 | 190 | 5.82e-29 | 116 |
| MsG0180003410.01.T01 | AT2G26150 | 46.154 | 143 | 69 | 3 | 146 | 281 | 49 | 190 | 5.82e-29 | 116 |
| MsG0180003410.01.T01 | AT2G41690 | 40.714 | 140 | 44 | 1 | 41 | 180 | 34 | 134 | 1.93e-28 | 113 |
Find 108 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGATGAAGAAGAAAATT+TGG | 0.205164 | 1:+61942537 | None:intergenic |
| AATTCAGAAACTAATATTAT+TGG | 0.214900 | 1:-61940699 | MsG0180003410.01.T01:CDS |
| ACGACCGGCTTCCATGATTT+TGG | 0.229018 | 1:-61940275 | MsG0180003410.01.T01:three_prime_UTR |
| TTTGAAGGGTTTCAATCTAT+TGG | 0.240093 | 1:-61940588 | MsG0180003410.01.T01:CDS |
| GAAGTTTGGGTATTGATAAT+TGG | 0.249663 | 1:-61940395 | MsG0180003410.01.T01:CDS |
| GAGCAATTATAGTTCCTATA+GGG | 0.268824 | 1:-61940160 | MsG0180003410.01.T01:three_prime_UTR |
| GAAACAAATGGTATCTTTCT+TGG | 0.279705 | 1:-61941063 | MsG0180003410.01.T01:CDS |
| CTTTGTTGTTTGGGATCCTT+TGG | 0.287745 | 1:-61942347 | MsG0180003410.01.T01:CDS |
| TCACCTTTAGTCATTTCTTT+AGG | 0.294012 | 1:+61940795 | None:intergenic |
| GATATGTGGGATATTGGTTT+TGG | 0.304447 | 1:-61940417 | MsG0180003410.01.T01:CDS |
| TTATCAAGCAAGAAGATATA+TGG | 0.310553 | 1:-61940554 | MsG0180003410.01.T01:CDS |
| TAGTGAGGTACCAACCAAAT+TGG | 0.312029 | 1:-61940902 | MsG0180003410.01.T01:CDS |
| TGGTGTTAGCTTTGTTGTTT+GGG | 0.316297 | 1:-61942356 | MsG0180003410.01.T01:CDS |
| GGCGAAGGATCATCTAGTTT+TGG | 0.320995 | 1:-61940678 | MsG0180003410.01.T01:CDS |
| TTGAAGGGTTTCAATCTATT+GGG | 0.328172 | 1:-61940587 | MsG0180003410.01.T01:CDS |
| TCAGGAATAACTTCTTCATT+TGG | 0.329440 | 1:+61940615 | None:intergenic |
| AAAATCTTGATTCATAAGTT+TGG | 0.330581 | 1:-61940305 | MsG0180003410.01.T01:three_prime_UTR |
| TGAGCAATTATAGTTCCTAT+AGG | 0.336407 | 1:-61940161 | MsG0180003410.01.T01:three_prime_UTR |
| ATGGTGTTAGCTTTGTTGTT+TGG | 0.339618 | 1:-61942357 | MsG0180003410.01.T01:CDS |
| ACAAACTTTCTTCTAACTCT+TGG | 0.347851 | 1:+61940969 | None:intergenic |
| TACAATACAGTTAGCTGTAT+TGG | 0.359866 | 1:+61941680 | None:intergenic |
| AGTGAGGTACCAACCAAATT+GGG | 0.367055 | 1:-61940901 | MsG0180003410.01.T01:CDS |
| TCTCTAATAGCAGGGAAATC+TGG | 0.369457 | 1:-61941227 | MsG0180003410.01.T01:intron |
| ACAGCACCAACATTGAAGTT+AGG | 0.369889 | 1:+61940528 | None:intergenic |
| ATTAAGCTGACGAACAAAAC+TGG | 0.370082 | 1:+61942276 | None:intergenic |
| ATGTGGGATCCTATGAATTA+TGG | 0.371954 | 1:-61940480 | MsG0180003410.01.T01:CDS |
| AAAGATGAAGAAGAAAATTT+GGG | 0.405694 | 1:+61942538 | None:intergenic |
| GAGACTCCTACTGCTGGAAT+TGG | 0.414069 | 1:-61941873 | MsG0180003410.01.T01:CDS |
| AGGTTGAGATTGAAAGATTG+AGG | 0.415211 | 1:-61941199 | MsG0180003410.01.T01:CDS |
| TTTGAGAGAAATGGTGGAAC+TGG | 0.415932 | 1:+61942436 | None:intergenic |
| ATGTCAGATATGTGGGATAT+TGG | 0.416242 | 1:-61940423 | MsG0180003410.01.T01:CDS |
| AAGATGAAAATCCCTTGAAA+AGG | 0.429844 | 1:+61941825 | None:intergenic |
| TTCAATAATATGACCCCTAT+AGG | 0.433795 | 1:+61940146 | None:intergenic |
| TGAGATTGAAAGATTGAGGA+AGG | 0.438960 | 1:-61941195 | MsG0180003410.01.T01:CDS |
| TCAGATACTCCATAATTCAT+AGG | 0.440777 | 1:+61940471 | None:intergenic |
| TGCTCAAAGGCAACAATTGT+AGG | 0.443415 | 1:+61940178 | None:intergenic |
| GTTGGATCTTCTTCTGATGC+AGG | 0.443789 | 1:-61941416 | MsG0180003410.01.T01:intron |
| TGAAACCCTTCAAAATTCTC+AGG | 0.455295 | 1:+61940597 | None:intergenic |
| TTGCATTCAATCAATTCATC+GGG | 0.455399 | 1:-61940012 | MsG0180003410.01.T01:three_prime_UTR |
| GCAAGATTGACACCGACAAA+TGG | 0.456806 | 1:-61941535 | MsG0180003410.01.T01:CDS |
| TCGTCAGCTTAATACTTATG+TGG | 0.457473 | 1:-61942266 | MsG0180003410.01.T01:CDS |
| GAAGAAGAAAATGTCAAAGA+TGG | 0.457561 | 1:-61940930 | MsG0180003410.01.T01:CDS |
| TAGTGATGTTCCTGTGCCTA+TGG | 0.466887 | 1:-61942476 | MsG0180003410.01.T01:CDS |
| CTTTGAATCCGATCATATCA+TGG | 0.467206 | 1:-61942387 | MsG0180003410.01.T01:CDS |
| TGTAACTTCTGCCAAAATCA+TGG | 0.468787 | 1:+61940264 | None:intergenic |
| GAATATGAAGCATCAGCTAT+AGG | 0.469331 | 1:-61942511 | MsG0180003410.01.T01:CDS |
| TGACTATCTATTTCATCAAA+AGG | 0.470522 | 1:+61940357 | None:intergenic |
| ATTGCATTCAATCAATTCAT+CGG | 0.472136 | 1:-61940013 | MsG0180003410.01.T01:three_prime_UTR |
| TATCAAGCAAGAAGATATAT+GGG | 0.482434 | 1:-61940553 | MsG0180003410.01.T01:CDS |
| CAGCAAGTTGGTAACTATGT+TGG | 0.484482 | 1:-61941434 | MsG0180003410.01.T01:CDS |
| CAGCACCAACATTGAAGTTA+GGG | 0.486019 | 1:+61940529 | None:intergenic |
| AATTATGGAGTATCTGACTT+TGG | 0.488166 | 1:-61940465 | MsG0180003410.01.T01:CDS |
| CAAGATTGACACCGACAAAT+GGG | 0.503413 | 1:-61941534 | MsG0180003410.01.T01:CDS |
| GAAACTAATATTATTGGCGA+AGG | 0.504296 | 1:-61940693 | MsG0180003410.01.T01:CDS |
| AGATGAAAATCCCTTGAAAA+GGG | 0.505105 | 1:+61941826 | None:intergenic |
| TCAGCTATAGGTGGTGGTAC+TGG | 0.505325 | 1:-61942499 | MsG0180003410.01.T01:CDS |
| AGCGCGACTTAAGCAGAAGA+AGG | 0.506475 | 1:-61941012 | MsG0180003410.01.T01:CDS |
| CTACCTAAAGAAATGACTAA+AGG | 0.514970 | 1:-61940798 | MsG0180003410.01.T01:CDS |
| TCAAAAGGAGATTCATCAGC+TGG | 0.517066 | 1:+61940372 | None:intergenic |
| TTGAAAGATTGAGGAAGGAG+AGG | 0.521106 | 1:-61941190 | MsG0180003410.01.T01:CDS |
| GATATGATCGGATTCAAAGA+AGG | 0.522372 | 1:+61942391 | None:intergenic |
| CGTCAGCTTAATACTTATGT+GGG | 0.527984 | 1:-61942265 | MsG0180003410.01.T01:intron |
| CATTCAGAGACTCCTACTGC+TGG | 0.530276 | 1:-61941879 | MsG0180003410.01.T01:intron |
| AGATCAAGTGAAAGATAGTG+AGG | 0.532262 | 1:+61940819 | None:intergenic |
| TTGAGAGAAATGGTGGAACT+GGG | 0.536551 | 1:+61942437 | None:intergenic |
| AGCAATTATAGTTCCTATAG+GGG | 0.540334 | 1:-61940159 | MsG0180003410.01.T01:three_prime_UTR |
| AACAACAAAGCTAACACCAT+TGG | 0.540487 | 1:+61942360 | None:intergenic |
| GTCCGGATTTGAAAACAACT+TGG | 0.541092 | 1:+61941040 | None:intergenic |
| TGAACAAAGACAGAAACAAA+TGG | 0.541684 | 1:-61941075 | MsG0180003410.01.T01:CDS |
| ACTGCTGGAATTGGCAACAT+AGG | 0.543095 | 1:-61941864 | MsG0180003410.01.T01:CDS |
| CGAATGACGGCTAGTCACGC+AGG | 0.554003 | 1:-61941125 | MsG0180003410.01.T01:CDS |
| CATTCAATCAATTCATCGGG+TGG | 0.565624 | 1:-61940009 | MsG0180003410.01.T01:three_prime_UTR |
| ATTTGTCGGTGTCAATCTTG+CGG | 0.568858 | 1:+61941537 | None:intergenic |
| GATGAATATGCTGCAATGCA+TGG | 0.570282 | 1:-61940735 | MsG0180003410.01.T01:CDS |
| TGGGACCCTAACTTCAATGT+TGG | 0.572995 | 1:-61940534 | MsG0180003410.01.T01:CDS |
| TCGGAGTTTCAATAAAATCA+CGG | 0.575050 | 1:-61940239 | MsG0180003410.01.T01:three_prime_UTR |
| ATAACTCTTGCAAACTCCAA+AGG | 0.576307 | 1:+61942331 | None:intergenic |
| GTGGTGACATGTCAGATATG+TGG | 0.577350 | 1:-61940431 | MsG0180003410.01.T01:CDS |
| GAAGCATCAGCTATAGGTGG+TGG | 0.582607 | 1:-61942505 | MsG0180003410.01.T01:CDS |
| ATCATATCATGGAGTTCCAA+TGG | 0.583067 | 1:-61942376 | MsG0180003410.01.T01:CDS |
| TTGGAACTCCATGATATGAT+CGG | 0.584421 | 1:+61942379 | None:intergenic |
| ACTTGTTGAAAAGCATTCAA+AGG | 0.586884 | 1:-61941475 | MsG0180003410.01.T01:CDS |
| TCTGCCAAAATCATGGAAGC+CGG | 0.586953 | 1:+61940271 | None:intergenic |
| CTCATCTGCAAACACTCCAT+AGG | 0.589952 | 1:+61942460 | None:intergenic |
| GTGAGGTACCAACCAAATTG+GGG | 0.592193 | 1:-61940900 | MsG0180003410.01.T01:CDS |
| ATATGATCGGATTCAAAGAA+GGG | 0.594477 | 1:+61942392 | None:intergenic |
| ATGTTGCCAATTCCAGCAGT+AGG | 0.594776 | 1:+61941867 | None:intergenic |
| TTGTTGTGTTTGAAGTGTCT+AGG | 0.595204 | 1:+61942304 | None:intergenic |
| AAGTTTGGCAGAATCACGAC+CGG | 0.596934 | 1:-61940290 | MsG0180003410.01.T01:three_prime_UTR |
| TGCAAACACTCCATAGGCAC+AGG | 0.597520 | 1:+61942466 | None:intergenic |
| ACGCAGGTAATGTGAATCAA+AGG | 0.601321 | 1:-61941109 | MsG0180003410.01.T01:CDS |
| TAGGAACTATAATTGCTCAA+AGG | 0.601783 | 1:+61940165 | None:intergenic |
| TTTGATGAAATAGATAGTCA+AGG | 0.610338 | 1:-61940354 | MsG0180003410.01.T01:CDS |
| TGGTGACATGTCAGATATGT+GGG | 0.612349 | 1:-61940430 | MsG0180003410.01.T01:CDS |
| CAAACTGTGGGAATGAGATG+TGG | 0.613012 | 1:-61940497 | MsG0180003410.01.T01:CDS |
| ACGTCTCAATCTCAGCAAGT+TGG | 0.616416 | 1:-61941446 | MsG0180003410.01.T01:CDS |
| ACAGCAGCAACAACGAATGA+CGG | 0.617265 | 1:-61941138 | MsG0180003410.01.T01:CDS |
| GACTTTGGAGTTGTTACAAG+TGG | 0.618117 | 1:-61940450 | MsG0180003410.01.T01:CDS |
| AGCAGGGAAATCTGGAGTCG+AGG | 0.619956 | 1:-61941219 | MsG0180003410.01.T01:intron |
| TCAAAGATGGAAAGATAGTG+AGG | 0.635058 | 1:-61940917 | MsG0180003410.01.T01:CDS |
| CTGTTGCTACTTCAAACTGT+GGG | 0.638412 | 1:-61940509 | MsG0180003410.01.T01:CDS |
| GATGAAATAGATAGTCAAGG+TGG | 0.640962 | 1:-61940351 | MsG0180003410.01.T01:CDS |
| GACTGTGTTAATGCAAGAAG+TGG | 0.653059 | 1:-61941168 | MsG0180003410.01.T01:CDS |
| AAACTGTGGGAATGAGATGT+GGG | 0.653938 | 1:-61940496 | MsG0180003410.01.T01:CDS |
| GCTGTTGCTACTTCAAACTG+TGG | 0.663813 | 1:-61940510 | MsG0180003410.01.T01:CDS |
| TATGAAGCATCAGCTATAGG+TGG | 0.681407 | 1:-61942508 | MsG0180003410.01.T01:CDS |
| CTTGCTGAGATTGAGACGTG+CGG | 0.690178 | 1:+61941450 | None:intergenic |
| TGAGGTACCAACCAAATTGG+GGG | 0.710225 | 1:-61940899 | MsG0180003410.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTCTTTTTTTCTTT+TGG | - | Chr1:61940404-61940423 | MsG0180003410.01.T01:CDS | 10.0% |
| !! | AATTCAGAAACTAATATTAT+TGG | - | Chr1:61941862-61941881 | MsG0180003410.01.T01:CDS | 15.0% |
| !! | TTACATTACATAGATTAATA+GGG | + | Chr1:61940373-61940392 | None:intergenic | 15.0% |
| !! | AAAATCTTGATTCATAAGTT+TGG | - | Chr1:61942256-61942275 | MsG0180003410.01.T01:intron | 20.0% |
| !! | AAAGATGAAGAAGAAAATTT+GGG | + | Chr1:61940026-61940045 | None:intergenic | 20.0% |
| !! | AACAATTTGATGTATCAATT+GGG | - | Chr1:61940487-61940506 | MsG0180003410.01.T01:CDS | 20.0% |
| !! | GTTACATTACATAGATTAAT+AGG | + | Chr1:61940374-61940393 | None:intergenic | 20.0% |
| !! | TACATTACATAGATTAATAG+GGG | + | Chr1:61940372-61940391 | None:intergenic | 20.0% |
| !! | TTATTCATTCTCAGATAATT+TGG | - | Chr1:61940983-61941002 | MsG0180003410.01.T01:CDS | 20.0% |
| !!! | AACATTTTTTCCTTTGAAAA+GGG | + | Chr1:61941920-61941939 | None:intergenic | 20.0% |
| !!! | TAACATTTTTTCCTTTGAAA+AGG | + | Chr1:61941921-61941940 | None:intergenic | 20.0% |
| !!! | TTATGAATCAAGATTTTCTT+AGG | + | Chr1:61942253-61942272 | None:intergenic | 20.0% |
| ! | AGAATGAATAAACCAAACAT+AGG | + | Chr1:61940974-61940993 | None:intergenic | 25.0% |
| ! | ATTGCATTCAATCAATTCAT+CGG | - | Chr1:61942548-61942567 | MsG0180003410.01.T01:CDS | 25.0% |
| ! | CAAAGATGAAGAAGAAAATT+TGG | + | Chr1:61940027-61940046 | None:intergenic | 25.0% |
| ! | GAACAATTTGATGTATCAAT+TGG | - | Chr1:61940486-61940505 | MsG0180003410.01.T01:CDS | 25.0% |
| ! | TATCAAGCAAGAAGATATAT+GGG | - | Chr1:61942008-61942027 | MsG0180003410.01.T01:intron | 25.0% |
| ! | TCTCTCAAAAACATTTGATT+TGG | - | Chr1:61940139-61940158 | MsG0180003410.01.T01:three_prime_UTR | 25.0% |
| ! | TGACTATCTATTTCATCAAA+AGG | + | Chr1:61942207-61942226 | None:intergenic | 25.0% |
| ! | TTATCAAGCAAGAAGATATA+TGG | - | Chr1:61942007-61942026 | MsG0180003410.01.T01:intron | 25.0% |
| ! | TTCAATCAACAAACACAAAA+GGG | + | Chr1:61940469-61940488 | None:intergenic | 25.0% |
| ! | TTTGATGAAATAGATAGTCA+AGG | - | Chr1:61942207-61942226 | MsG0180003410.01.T01:intron | 25.0% |
| !! | ATTTTCTTCTTCATCTTTGA+TGG | - | Chr1:61940028-61940047 | MsG0180003410.01.T01:three_prime_UTR | 25.0% |
| !! | TCACATCAAACCTTTTATAT+AGG | - | Chr1:61941218-61941237 | MsG0180003410.01.T01:intron | 25.0% |
| !! | TGACATTTTCTTCTTCATTT+TGG | + | Chr1:61941627-61941646 | None:intergenic | 25.0% |
| !! | TTATTCCTGAGAATTTTGAA+GGG | - | Chr1:61941959-61941978 | MsG0180003410.01.T01:intron | 25.0% |
| !!! | ACATTTTTTCCTTTGAAAAG+GGG | + | Chr1:61941919-61941938 | None:intergenic | 25.0% |
| !!! | AGTTTGTTAGCCTATATAAA+AGG | + | Chr1:61941231-61941250 | None:intergenic | 25.0% |
| !!! | TAAGCTTGTCTTTTTTGTTT+TGG | - | Chr1:61940841-61940860 | MsG0180003410.01.T01:CDS | 25.0% |
| !!! | TCAAATGTTTTTGAGAGAAA+TGG | + | Chr1:61940137-61940156 | None:intergenic | 25.0% |
| AAAGAGAGTGACAAAAATTG+TGG | + | Chr1:61942495-61942514 | None:intergenic | 30.0% | |
| AAGATGAAAATCCCTTGAAA+AGG | + | Chr1:61940739-61940758 | None:intergenic | 30.0% | |
| ACAAACTTTCTTCTAACTCT+TGG | + | Chr1:61941595-61941614 | None:intergenic | 30.0% | |
| AGATGAAAATCCCTTGAAAA+GGG | + | Chr1:61940738-61940757 | None:intergenic | 30.0% | |
| AGCAATTATAGTTCCTATAG+GGG | - | Chr1:61942402-61942421 | MsG0180003410.01.T01:CDS | 30.0% | |
| ATATGATCGGATTCAAAGAA+GGG | + | Chr1:61940172-61940191 | None:intergenic | 30.0% | |
| ATTGAAAAACTCCCATTTGT+CGG | + | Chr1:61941041-61941060 | None:intergenic | 30.0% | |
| CTACCTAAAGAAATGACTAA+AGG | - | Chr1:61941763-61941782 | MsG0180003410.01.T01:intron | 30.0% | |
| GAAACAAATGGTATCTTTCT+TGG | - | Chr1:61941498-61941517 | MsG0180003410.01.T01:CDS | 30.0% | |
| GAAACTAATATTATTGGCGA+AGG | - | Chr1:61941868-61941887 | MsG0180003410.01.T01:CDS | 30.0% | |
| GAAGAAGAAAATGTCAAAGA+TGG | - | Chr1:61941631-61941650 | MsG0180003410.01.T01:intron | 30.0% | |
| GAGCAATTATAGTTCCTATA+GGG | - | Chr1:61942401-61942420 | MsG0180003410.01.T01:CDS | 30.0% | |
| GTTCAATCAACAAACACAAA+AGG | + | Chr1:61940470-61940489 | None:intergenic | 30.0% | |
| TAACTGTATCTCTAATAGCA+GGG | - | Chr1:61941326-61941345 | MsG0180003410.01.T01:intron | 30.0% | |
| TACAATACAGTTAGCTGTAT+TGG | + | Chr1:61940884-61940903 | None:intergenic | 30.0% | |
| TAGGAACTATAATTGCTCAA+AGG | + | Chr1:61942399-61942418 | None:intergenic | 30.0% | |
| TCAATCAACAAACACAAAAG+GGG | + | Chr1:61940468-61940487 | None:intergenic | 30.0% | |
| TCACCTTTAGTCATTTCTTT+AGG | + | Chr1:61941769-61941788 | None:intergenic | 30.0% | |
| TCAGATACTCCATAATTCAT+AGG | + | Chr1:61942093-61942112 | None:intergenic | 30.0% | |
| TCAGGAATAACTTCTTCATT+TGG | + | Chr1:61941949-61941968 | None:intergenic | 30.0% | |
| TCGGAGTTTCAATAAAATCA+CGG | - | Chr1:61942322-61942341 | MsG0180003410.01.T01:CDS | 30.0% | |
| TGAACAAAGACAGAAACAAA+TGG | - | Chr1:61941486-61941505 | MsG0180003410.01.T01:CDS | 30.0% | |
| TGAGCAATTATAGTTCCTAT+AGG | - | Chr1:61942400-61942419 | MsG0180003410.01.T01:CDS | 30.0% | |
| TTCAATAATATGACCCCTAT+AGG | + | Chr1:61942418-61942437 | None:intergenic | 30.0% | |
| TTGAAGGGTTTCAATCTATT+GGG | - | Chr1:61941974-61941993 | MsG0180003410.01.T01:intron | 30.0% | |
| TTGCATTCAATCAATTCATC+GGG | - | Chr1:61942549-61942568 | MsG0180003410.01.T01:CDS | 30.0% | |
| TTTGAAGGGTTTCAATCTAT+TGG | - | Chr1:61941973-61941992 | MsG0180003410.01.T01:intron | 30.0% | |
| ! | AATTATGGAGTATCTGACTT+TGG | - | Chr1:61942096-61942115 | MsG0180003410.01.T01:intron | 30.0% |
| ! | GAATCAAGATTTTCTTAGGT+AGG | + | Chr1:61942249-61942268 | None:intergenic | 30.0% |
| ! | GTTATTCCTGAGAATTTTGA+AGG | - | Chr1:61941958-61941977 | MsG0180003410.01.T01:intron | 30.0% |
| ! | TTCAATGAAGGTTTTCAGAA+AGG | - | Chr1:61941055-61941074 | MsG0180003410.01.T01:CDS | 30.0% |
| ! | TTTTGGCAGAAGTTACATTT+CGG | - | Chr1:61942303-61942322 | MsG0180003410.01.T01:CDS | 30.0% |
| !! | AAATGGGAGTTTTTCAATGA+AGG | - | Chr1:61941043-61941062 | MsG0180003410.01.T01:CDS | 30.0% |
| !! | AATGTTTTTGAGAGAAATGG+TGG | + | Chr1:61940134-61940153 | None:intergenic | 30.0% |
| !! | ACTTGTTGAAAAGCATTCAA+AGG | - | Chr1:61941086-61941105 | MsG0180003410.01.T01:CDS | 30.0% |
| !! | GAAGTTTGGGTATTGATAAT+TGG | - | Chr1:61942166-61942185 | MsG0180003410.01.T01:intron | 30.0% |
| !! | TGTGTTTTTGTTACTACTAG+TGG | - | Chr1:61940581-61940600 | MsG0180003410.01.T01:CDS | 30.0% |
| !!! | GATATTGGTTTTGGAAGTTT+GGG | - | Chr1:61942153-61942172 | MsG0180003410.01.T01:intron | 30.0% |
| !!! | GGAGAGTTTTTTTCATCATT+TGG | + | Chr1:61940005-61940024 | None:intergenic | 30.0% |
| AACAACAAAGCTAACACCAT+TGG | + | Chr1:61940204-61940223 | None:intergenic | 35.0% | |
| ACTACACAATGCAATCAATC+AGG | + | Chr1:61940657-61940676 | None:intergenic | 35.0% | |
| AGATCAAGTGAAAGATAGTG+AGG | + | Chr1:61941745-61941764 | None:intergenic | 35.0% | |
| AGGTTGAGATTGAAAGATTG+AGG | - | Chr1:61941362-61941381 | MsG0180003410.01.T01:intron | 35.0% | |
| ATAACTCTTGCAAACTCCAA+AGG | + | Chr1:61940233-61940252 | None:intergenic | 35.0% | |
| ATCATATCATGGAGTTCCAA+TGG | - | Chr1:61940185-61940204 | MsG0180003410.01.T01:three_prime_UTR | 35.0% | |
| ATGTCAGATATGTGGGATAT+TGG | - | Chr1:61942138-61942157 | MsG0180003410.01.T01:intron | 35.0% | |
| ATGTCTATATTCCCCCAATT+TGG | + | Chr1:61941676-61941695 | None:intergenic | 35.0% | |
| ATGTGGGATCCTATGAATTA+TGG | - | Chr1:61942081-61942100 | MsG0180003410.01.T01:intron | 35.0% | |
| ATTAAGCTGACGAACAAAAC+TGG | + | Chr1:61940288-61940307 | None:intergenic | 35.0% | |
| CAATCAACAAACACAAAAGG+GGG | + | Chr1:61940467-61940486 | None:intergenic | 35.0% | |
| CGTCAGCTTAATACTTATGT+GGG | - | Chr1:61940296-61940315 | MsG0180003410.01.T01:three_prime_UTR | 35.0% | |
| CTAACTGTATCTCTAATAGC+AGG | - | Chr1:61941325-61941344 | MsG0180003410.01.T01:intron | 35.0% | |
| CTTTGAATCCGATCATATCA+TGG | - | Chr1:61940174-61940193 | MsG0180003410.01.T01:three_prime_UTR | 35.0% | |
| GATATGATCGGATTCAAAGA+AGG | + | Chr1:61940173-61940192 | None:intergenic | 35.0% | |
| GATGAAATAGATAGTCAAGG+TGG | - | Chr1:61942210-61942229 | MsG0180003410.01.T01:intron | 35.0% | |
| TCAAAGATGGAAAGATAGTG+AGG | - | Chr1:61941644-61941663 | MsG0180003410.01.T01:intron | 35.0% | |
| TCGTCAGCTTAATACTTATG+TGG | - | Chr1:61940295-61940314 | MsG0180003410.01.T01:three_prime_UTR | 35.0% | |
| TGAAACCCTTCAAAATTCTC+AGG | + | Chr1:61941967-61941986 | None:intergenic | 35.0% | |
| TGAGATTGAAAGATTGAGGA+AGG | - | Chr1:61941366-61941385 | MsG0180003410.01.T01:intron | 35.0% | |
| TGTAACTTCTGCCAAAATCA+TGG | + | Chr1:61942300-61942319 | None:intergenic | 35.0% | |
| TTGGAACTCCATGATATGAT+CGG | + | Chr1:61940185-61940204 | None:intergenic | 35.0% | |
| TTTCTTGAGTCTCCTATGTT+TGG | - | Chr1:61940959-61940978 | MsG0180003410.01.T01:CDS | 35.0% | |
| ! | AAGGGATTTTCATCTTTCCA+AGG | - | Chr1:61940743-61940762 | MsG0180003410.01.T01:CDS | 35.0% |
| ! | ACTTTTCACAATGCCTCTAA+TGG | - | Chr1:61940346-61940365 | MsG0180003410.01.T01:CDS | 35.0% |
| ! | ATAGTGAGGAGAGTTTTCAA+TGG | + | Chr1:61941731-61941750 | None:intergenic | 35.0% |
| ! | GAATATGAAGCATCAGCTAT+AGG | - | Chr1:61940050-61940069 | MsG0180003410.01.T01:three_prime_UTR | 35.0% |
| ! | GATTTTCATCTTTCCAAGGT+AGG | - | Chr1:61940747-61940766 | MsG0180003410.01.T01:CDS | 35.0% |
| ! | TTGTTGTGTTTGAAGTGTCT+AGG | + | Chr1:61940260-61940279 | None:intergenic | 35.0% |
| !! | ATAATTTGGTGTTTGAGCAC+AGG | - | Chr1:61940997-61941016 | MsG0180003410.01.T01:CDS | 35.0% |
| !! | ATGGTGTTAGCTTTGTTGTT+TGG | - | Chr1:61940204-61940223 | MsG0180003410.01.T01:three_prime_UTR | 35.0% |
| !! | TAATTTGGTGTTTGAGCACA+GGG | - | Chr1:61940998-61941017 | MsG0180003410.01.T01:CDS | 35.0% |
| !! | TGGTGTTAGCTTTGTTGTTT+GGG | - | Chr1:61940205-61940224 | MsG0180003410.01.T01:three_prime_UTR | 35.0% |
| !!! | GATATGTGGGATATTGGTTT+TGG | - | Chr1:61942144-61942163 | MsG0180003410.01.T01:intron | 35.0% |
| !!! | GGATATTGGTTTTGGAAGTT+TGG | - | Chr1:61942152-61942171 | MsG0180003410.01.T01:intron | 35.0% |
| AAACTGTGGGAATGAGATGT+GGG | - | Chr1:61942065-61942084 | MsG0180003410.01.T01:intron | 40.0% | |
| ACACAATGCAATCAATCAGG+AGG | + | Chr1:61940654-61940673 | None:intergenic | 40.0% | |
| ACAGCACCAACATTGAAGTT+AGG | + | Chr1:61942036-61942055 | None:intergenic | 40.0% | |
| ACGCAGGTAATGTGAATCAA+AGG | - | Chr1:61941452-61941471 | MsG0180003410.01.T01:CDS | 40.0% | |
| AGATTAATAGGGGCCATTAG+AGG | + | Chr1:61940362-61940381 | None:intergenic | 40.0% | |
| CAAGATTGACACCGACAAAT+GGG | - | Chr1:61941027-61941046 | MsG0180003410.01.T01:CDS | 40.0% | |
| CAGCACCAACATTGAAGTTA+GGG | + | Chr1:61942035-61942054 | None:intergenic | 40.0% | |
| CATTCAATCAATTCATCGGG+TGG | - | Chr1:61942552-61942571 | MsG0180003410.01.T01:CDS | 40.0% | |
| CTATATTCCCCCAATTTGGT+TGG | + | Chr1:61941672-61941691 | None:intergenic | 40.0% | |
| GACTGTGTTAATGCAAGAAG+TGG | - | Chr1:61941393-61941412 | MsG0180003410.01.T01:intron | 40.0% | |
| GATGAATATGCTGCAATGCA+TGG | - | Chr1:61941826-61941845 | MsG0180003410.01.T01:CDS | 40.0% | |
| GTCCGGATTTGAAAACAACT+TGG | + | Chr1:61941524-61941543 | None:intergenic | 40.0% | |
| TCAAAAGGAGATTCATCAGC+TGG | + | Chr1:61942192-61942211 | None:intergenic | 40.0% | |
| TCTCTAATAGCAGGGAAATC+TGG | - | Chr1:61941334-61941353 | MsG0180003410.01.T01:intron | 40.0% | |
| TGAAACACAGAATCCTACCT+TGG | + | Chr1:61940763-61940782 | None:intergenic | 40.0% | |
| TGCTCAAAGGCAACAATTGT+AGG | + | Chr1:61942386-61942405 | None:intergenic | 40.0% | |
| TGGTGACATGTCAGATATGT+GGG | - | Chr1:61942131-61942150 | MsG0180003410.01.T01:intron | 40.0% | |
| TTAAGTCGCGCTAAAAAGTC+CGG | + | Chr1:61941541-61941560 | None:intergenic | 40.0% | |
| TTGAAAGATTGAGGAAGGAG+AGG | - | Chr1:61941371-61941390 | MsG0180003410.01.T01:intron | 40.0% | |
| ! | AATGTTGCTCTCCCTTTTCA+AGG | - | Chr1:61940724-61940743 | MsG0180003410.01.T01:CDS | 40.0% |
| ! | AGTGAGGTACCAACCAAATT+GGG | - | Chr1:61941660-61941679 | MsG0180003410.01.T01:intron | 40.0% |
| ! | ATGTTGCTCTCCCTTTTCAA+GGG | - | Chr1:61940725-61940744 | MsG0180003410.01.T01:CDS | 40.0% |
| ! | CTGTTGCTACTTCAAACTGT+GGG | - | Chr1:61942052-61942071 | MsG0180003410.01.T01:intron | 40.0% |
| ! | CTTGATGAACCCCTTTTCAA+AGG | - | Chr1:61941907-61941926 | MsG0180003410.01.T01:intron | 40.0% |
| ! | GGAGAGTTTTCAATGGAAAC+TGG | + | Chr1:61941724-61941743 | None:intergenic | 40.0% |
| ! | TAGTGAGGTACCAACCAAAT+TGG | - | Chr1:61941659-61941678 | MsG0180003410.01.T01:intron | 40.0% |
| ! | TATGAAGCATCAGCTATAGG+TGG | - | Chr1:61940053-61940072 | MsG0180003410.01.T01:three_prime_UTR | 40.0% |
| ! | TTGAGAGAAATGGTGGAACT+GGG | + | Chr1:61940127-61940146 | None:intergenic | 40.0% |
| ! | TTTGAGAGAAATGGTGGAAC+TGG | + | Chr1:61940128-61940147 | None:intergenic | 40.0% |
| !! | ATTTGTCGGTGTCAATCTTG+CGG | + | Chr1:61941027-61941046 | None:intergenic | 40.0% |
| !! | CAGCAAGTTGGTAACTATGT+TGG | - | Chr1:61941127-61941146 | MsG0180003410.01.T01:CDS | 40.0% |
| !! | CTTTGTTGTTTGGGATCCTT+TGG | - | Chr1:61940214-61940233 | MsG0180003410.01.T01:three_prime_UTR | 40.0% |
| !! | GACTTTGGAGTTGTTACAAG+TGG | - | Chr1:61942111-61942130 | MsG0180003410.01.T01:intron | 40.0% |
| !! | GGCCAAGTTGTTTTCAAATC+CGG | - | Chr1:61941519-61941538 | MsG0180003410.01.T01:CDS | 40.0% |
| AACAAACACAAAAGGGGGAG+AGG | + | Chr1:61940462-61940481 | None:intergenic | 45.0% | |
| AAGTTTGGCAGAATCACGAC+CGG | - | Chr1:61942271-61942290 | MsG0180003410.01.T01:CDS | 45.0% | |
| ACAAACACAAAAGGGGGAGA+GGG | + | Chr1:61940461-61940480 | None:intergenic | 45.0% | |
| ACAGCAGCAACAACGAATGA+CGG | - | Chr1:61941423-61941442 | MsG0180003410.01.T01:CDS | 45.0% | |
| ACGTCTCAATCTCAGCAAGT+TGG | - | Chr1:61941115-61941134 | MsG0180003410.01.T01:CDS | 45.0% | |
| ACTGCTGGAATTGGCAACAT+AGG | - | Chr1:61940697-61940716 | MsG0180003410.01.T01:CDS | 45.0% | |
| ATGTTGCCAATTCCAGCAGT+AGG | + | Chr1:61940697-61940716 | None:intergenic | 45.0% | |
| CAAACTGTGGGAATGAGATG+TGG | - | Chr1:61942064-61942083 | MsG0180003410.01.T01:intron | 45.0% | |
| CTCATCTGCAAACACTCCAT+AGG | + | Chr1:61940104-61940123 | None:intergenic | 45.0% | |
| GCAAGATTGACACCGACAAA+TGG | - | Chr1:61941026-61941045 | MsG0180003410.01.T01:CDS | 45.0% | |
| GTGGTGACATGTCAGATATG+TGG | - | Chr1:61942130-61942149 | MsG0180003410.01.T01:intron | 45.0% | |
| GTTGGATCTTCTTCTGATGC+AGG | - | Chr1:61941145-61941164 | MsG0180003410.01.T01:CDS | 45.0% | |
| TAGTGATGTTCCTGTGCCTA+TGG | - | Chr1:61940085-61940104 | MsG0180003410.01.T01:three_prime_UTR | 45.0% | |
| TCTGCCAAAATCATGGAAGC+CGG | + | Chr1:61942293-61942312 | None:intergenic | 45.0% | |
| TGGGACCCTAACTTCAATGT+TGG | - | Chr1:61942027-61942046 | MsG0180003410.01.T01:intron | 45.0% | |
| ! | GCTGTTGCTACTTCAAACTG+TGG | - | Chr1:61942051-61942070 | MsG0180003410.01.T01:intron | 45.0% |
| ! | GTGAGGTACCAACCAAATTG+GGG | - | Chr1:61941661-61941680 | MsG0180003410.01.T01:intron | 45.0% |
| ! | TGAGGTACCAACCAAATTGG+GGG | - | Chr1:61941662-61941681 | MsG0180003410.01.T01:intron | 45.0% |
| !! | GGCGAAGGATCATCTAGTTT+TGG | - | Chr1:61941883-61941902 | MsG0180003410.01.T01:intron | 45.0% |
| AGCGCGACTTAAGCAGAAGA+AGG | - | Chr1:61941549-61941568 | MsG0180003410.01.T01:intron | 50.0% | |
| CATTCAGAGACTCCTACTGC+TGG | - | Chr1:61940682-61940701 | MsG0180003410.01.T01:CDS | 50.0% | |
| CTTGCTGAGATTGAGACGTG+CGG | + | Chr1:61941114-61941133 | None:intergenic | 50.0% | |
| GAGACTCCTACTGCTGGAAT+TGG | - | Chr1:61940688-61940707 | MsG0180003410.01.T01:CDS | 50.0% | |
| TGCAAACACTCCATAGGCAC+AGG | + | Chr1:61940098-61940117 | None:intergenic | 50.0% | |
| ! | GAAGCATCAGCTATAGGTGG+TGG | - | Chr1:61940056-61940075 | MsG0180003410.01.T01:three_prime_UTR | 50.0% |
| ! | TCAGCTATAGGTGGTGGTAC+TGG | - | Chr1:61940062-61940081 | MsG0180003410.01.T01:three_prime_UTR | 50.0% |
| !! | ACGACCGGCTTCCATGATTT+TGG | - | Chr1:61942286-61942305 | MsG0180003410.01.T01:CDS | 50.0% |
| ! | AGCAGGGAAATCTGGAGTCG+AGG | - | Chr1:61941342-61941361 | MsG0180003410.01.T01:intron | 55.0% |
| ! | CGAATGACGGCTAGTCACGC+AGG | - | Chr1:61941436-61941455 | MsG0180003410.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 61939996 | 61942587 | 61939996 | ID=MsG0180003410.01;Name=MsG0180003410.01 |
| Chr1 | mRNA | 61939996 | 61942587 | 61939996 | ID=MsG0180003410.01.T01;Parent=MsG0180003410.01;Name=MsG0180003410.01.T01;_AED=0.43;_eAED=0.44;_QI=0|0.25|0.4|1|1|1|5|333|496 |
| Chr1 | exon | 61939996 | 61941236 | 61939996 | ID=MsG0180003410.01.T01:exon:49776;Parent=MsG0180003410.01.T01 |
| Chr1 | exon | 61941417 | 61941564 | 61941417 | ID=MsG0180003410.01.T01:exon:49775;Parent=MsG0180003410.01.T01 |
| Chr1 | exon | 61941676 | 61941712 | 61941676 | ID=MsG0180003410.01.T01:exon:49774;Parent=MsG0180003410.01.T01 |
| Chr1 | exon | 61941819 | 61941894 | 61941819 | ID=MsG0180003410.01.T01:exon:49773;Parent=MsG0180003410.01.T01 |
| Chr1 | exon | 61942266 | 61942587 | 61942266 | ID=MsG0180003410.01.T01:exon:49772;Parent=MsG0180003410.01.T01 |
| Chr1 | CDS | 61942266 | 61942587 | 61942266 | ID=MsG0180003410.01.T01:cds;Parent=MsG0180003410.01.T01 |
| Chr1 | CDS | 61941819 | 61941894 | 61941819 | ID=MsG0180003410.01.T01:cds;Parent=MsG0180003410.01.T01 |
| Chr1 | CDS | 61941676 | 61941712 | 61941676 | ID=MsG0180003410.01.T01:cds;Parent=MsG0180003410.01.T01 |
| Chr1 | CDS | 61941417 | 61941564 | 61941417 | ID=MsG0180003410.01.T01:cds;Parent=MsG0180003410.01.T01 |
| Chr1 | CDS | 61940329 | 61941236 | 61940329 | ID=MsG0180003410.01.T01:cds;Parent=MsG0180003410.01.T01 |
| Chr1 | three_prime_UTR | 61939996 | 61940328 | 61939996 | ID=MsG0180003410.01.T01:three_prime_utr;Parent=MsG0180003410.01.T01 |
| Gene Sequence |
| Protein sequence |
