AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016661.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016661.01.T01 MTR_3g092780 90.378 291 2 4 1 266 1 290 0.0 525
MsG0380016661.01.T01 MTR_3g092780 88.679 106 12 0 285 390 374 479 2.27e-56 198
MsG0380016661.01.T01 MTR_3g092780 86.458 96 2 1 392 476 547 642 7.08e-44 164
MsG0380016661.01.T01 MTR_3g092780 90.378 291 2 4 1 266 1 290 0.0 525
MsG0380016661.01.T01 MTR_3g092780 88.679 106 12 0 285 390 415 520 3.78e-56 199
MsG0380016661.01.T01 MTR_3g092780 86.458 96 2 1 392 476 588 683 1.02e-43 164
MsG0380016661.01.T01 MTR_3g092780 90.034 291 2 5 1 266 1 289 1.73e-179 518
MsG0380016661.01.T01 MTR_3g092780 88.679 106 12 0 285 390 373 478 2.26e-56 198
MsG0380016661.01.T01 MTR_3g092780 86.458 96 2 1 392 476 546 641 7.73e-44 164
MsG0380016661.01.T01 MTR_3g092780 90.034 291 2 5 1 266 1 289 9.81e-179 518
MsG0380016661.01.T01 MTR_3g092780 88.679 106 12 0 285 390 414 519 3.81e-56 199
MsG0380016661.01.T01 MTR_3g092780 86.458 96 2 1 392 476 587 682 1.09e-43 164
MsG0380016661.01.T01 MTR_7g118260 59.677 186 58 1 48 233 7 175 3.17e-69 232
MsG0380016661.01.T01 MTR_7g118260 71.756 131 37 0 48 178 7 137 2.96e-62 213
MsG0380016661.01.T01 MTR_8g024260 51.980 202 87 3 42 240 23 217 5.72e-62 214
MsG0380016661.01.T01 MTR_1g067110 49.223 193 98 0 43 235 73 265 3.19e-53 191
MsG0380016661.01.T01 MTR_1g067110 49.223 193 98 0 43 235 73 265 4.13e-53 191
MsG0380016661.01.T01 MTR_4g061360 58.015 131 55 0 46 176 80 210 2.02e-49 181
MsG0380016661.01.T01 MTR_3g037390 45.736 129 70 0 49 177 18 146 2.72e-30 124
MsG0380016661.01.T01 MTR_4g108880 40.000 155 82 1 23 177 12 155 7.61e-30 123
MsG0380016661.01.T01 MTR_1g032570 42.276 123 66 2 55 176 15 133 2.35e-24 107
MsG0380016661.01.T01 MTR_2g034960 36.306 157 95 2 55 210 33 185 7.87e-24 105
MsG0380016661.01.T01 MTR_4g121020 35.669 157 96 2 55 210 35 187 8.94e-24 105
MsG0380016661.01.T01 MTR_4g121020 35.669 157 96 2 55 210 35 187 9.42e-24 105
MsG0380016661.01.T01 MTR_2g450070 37.903 124 72 2 55 177 22 141 9.46e-24 105
MsG0380016661.01.T01 MTR_2g450070 37.903 124 72 2 55 177 22 141 9.62e-24 105
MsG0380016661.01.T01 MTR_3g086100 41.129 124 68 2 55 177 17 136 9.65e-24 105
MsG0380016661.01.T01 MTR_4g131580 36.986 146 80 4 55 193 21 161 1.29e-23 104
MsG0380016661.01.T01 MTR_3g106220 37.097 124 73 2 55 177 12 131 2.92e-22 100
MsG0380016661.01.T01 MTR_8g079940 35.088 171 97 5 55 216 29 194 4.69e-22 99.8
MsG0380016661.01.T01 MTR_4g131570 37.008 127 75 2 55 180 21 143 8.94e-22 99.0
MsG0380016661.01.T01 MTR_4g131600 34.132 167 89 5 55 214 24 176 8.96e-22 99.0
MsG0380016661.01.T01 MTR_1g013170 36.220 127 76 2 55 180 9 131 2.57e-21 97.1
MsG0380016661.01.T01 MTR_3g102600 33.333 174 95 5 55 226 12 166 4.11e-20 88.6
MsG0380016661.01.T01 MTR_3g102600 33.333 174 95 5 55 226 12 166 5.29e-20 89.4
MsG0380016661.01.T01 MTR_1g013180 35.766 137 82 3 42 177 148 279 1.25e-19 92.8
MsG0380016661.01.T01 MTR_7g117705 33.594 128 79 3 55 180 9 132 6.51e-17 83.6
MsG0380016661.01.T01 MTR_1g049100 30.597 134 82 1 55 177 8 141 1.45e-16 78.6
MsG0380016661.01.T01 MTR_7g490310 29.496 139 80 2 55 175 9 147 9.62e-16 77.0
MsG0380016661.01.T01 MTR_3g102590 31.515 165 105 3 55 218 12 169 1.55e-15 75.5
MsG0380016661.01.T01 MTR_1g067110 43.000 100 57 0 136 235 1 100 1.60e-15 79.7
MsG0380016661.01.T01 MTR_3g102590 31.515 165 105 3 55 218 12 169 2.36e-15 75.9
MsG0380016661.01.T01 MTR_5g036480 26.316 190 113 3 55 231 16 191 3.89e-15 75.5
MsG0380016661.01.T01 MTR_3g102600 45.000 80 38 3 102 179 10 85 5.72e-15 72.4
MsG0380016661.01.T01 MTR_3g102600 35.156 128 62 5 101 226 9 117 8.97e-15 72.8
MsG0380016661.01.T01 MTR_3g078613 30.769 130 81 2 55 175 23 152 1.11e-14 73.2
MsG0380016661.01.T01 MTR_4g106590 29.771 131 82 2 55 175 26 156 9.89e-14 70.9
MsG0380016661.01.T01 MTR_4g098870 31.469 143 89 4 43 184 8 142 1.30e-13 73.6
MsG0380016661.01.T01 MTR_4g098870 31.973 147 87 5 43 188 8 142 1.51e-13 73.2
MsG0380016661.01.T01 MTR_4g098870 31.973 147 87 5 43 188 28 162 1.54e-13 73.2
MsG0380016661.01.T01 MTR_4g098870 31.973 147 87 5 43 188 28 162 1.72e-13 73.2
MsG0380016661.01.T01 MTR_4g098870 31.469 143 89 4 43 184 47 181 2.39e-13 72.8
MsG0380016661.01.T01 MTR_1g098620 84.211 38 6 0 285 322 50 87 2.46e-13 66.6
MsG0380016661.01.T01 MTR_3g078613 30.534 131 81 3 55 175 23 153 3.42e-13 68.9
MsG0380016661.01.T01 MTR_1g032570 48.529 68 30 2 110 176 1 64 8.10e-13 70.9
MsG0380016661.01.T01 MTR_5g014040 30.070 143 91 4 43 184 8 142 1.01e-12 70.9
MsG0380016661.01.T01 MTR_5g014040 30.070 143 91 4 43 184 8 142 1.13e-12 70.5
MsG0380016661.01.T01 MTR_3g037390 69.048 42 13 0 136 177 1 42 1.30e-12 70.1
MsG0380016661.01.T01 MTR_3g093860 31.496 127 72 3 56 169 19 143 4.12e-12 64.7
MsG0380016661.01.T01 MTR_3g086100 47.826 69 31 2 110 177 1 65 4.78e-12 68.6
MsG0380016661.01.T01 MTR_8g038620 26.812 138 84 1 55 175 9 146 7.56e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016661.01.T01 AT5G24470 61.135 229 74 4 40 268 35 248 9.88e-87 277
MsG0380016661.01.T01 AT2G46790 74.627 134 34 0 43 176 25 158 1.00e-69 229
MsG0380016661.01.T01 AT2G46790 74.627 134 34 0 43 176 25 158 1.34e-69 229
MsG0380016661.01.T01 AT5G60100 60.448 134 53 0 43 176 52 185 4.19e-53 184
MsG0380016661.01.T01 AT5G60100 60.448 134 53 0 43 176 52 185 4.19e-53 184
MsG0380016661.01.T01 AT5G60100 60.448 134 53 0 43 176 52 185 4.19e-53 184
MsG0380016661.01.T01 AT5G60100 60.448 134 53 0 43 176 52 185 1.15e-52 186
MsG0380016661.01.T01 AT5G60100 60.448 134 53 0 43 176 52 185 1.15e-52 186
MsG0380016661.01.T01 AT5G60100 60.448 134 53 0 43 176 52 185 1.15e-52 186
MsG0380016661.01.T01 AT5G60100 60.448 134 53 0 43 176 52 185 1.13e-51 183
MsG0380016661.01.T01 AT5G02810 48.023 177 82 2 10 176 23 199 2.69e-48 177
MsG0380016661.01.T01 AT5G61380 43.571 140 76 1 38 177 5 141 9.60e-30 123
MsG0380016661.01.T01 AT2G25180 35.802 162 99 2 55 215 17 174 3.27e-26 112
MsG0380016661.01.T01 AT4G31920 40.164 122 68 2 55 175 17 134 4.78e-23 102
MsG0380016661.01.T01 AT3G16857 35.152 165 96 4 35 198 23 177 4.62e-22 100
MsG0380016661.01.T01 AT3G16857 35.152 165 96 4 35 198 23 177 4.69e-22 100
MsG0380016661.01.T01 AT2G01760 40.800 125 68 2 55 177 11 131 6.51e-21 94.7
MsG0380016661.01.T01 AT1G67710 38.889 126 72 2 55 179 11 132 7.93e-21 95.9
MsG0380016661.01.T01 AT5G58080 34.437 151 90 3 45 195 10 151 1.88e-19 92.0
MsG0380016661.01.T01 AT2G46790 80.488 41 8 0 136 176 1 41 3.88e-17 83.2
MsG0380016661.01.T01 AT2G01760 37.143 140 72 5 49 177 25 159 6.01e-17 83.2
MsG0380016661.01.T01 AT3G16857 40.449 89 48 2 90 177 2 86 1.32e-15 80.1
MsG0380016661.01.T01 AT1G19050 30.597 134 84 2 55 179 24 157 2.28e-15 75.5
MsG0380016661.01.T01 AT1G10470 31.538 130 80 1 55 175 34 163 1.14e-14 74.3
MsG0380016661.01.T01 AT1G10470 31.538 130 80 1 55 175 20 149 1.25e-14 73.9
MsG0380016661.01.T01 AT1G59940 32.308 130 79 1 55 175 33 162 1.83e-14 73.2
MsG0380016661.01.T01 AT3G62670 29.609 179 113 5 47 221 34 203 1.96e-14 75.5
MsG0380016661.01.T01 AT1G74890 30.000 130 82 1 55 175 18 147 3.18e-14 72.0
MsG0380016661.01.T01 AT1G59940 32.308 130 79 1 55 175 125 254 4.82e-14 73.6
MsG0380016661.01.T01 AT3G57040 28.571 140 81 1 55 175 9 148 1.17e-13 70.9
MsG0380016661.01.T01 AT3G57040 28.571 140 81 1 55 175 9 148 1.17e-13 70.9
MsG0380016661.01.T01 AT3G48100 30.714 140 86 3 51 180 22 160 1.78e-13 69.3
MsG0380016661.01.T01 AT5G02810 54.237 59 23 1 118 176 1 55 2.01e-13 73.2
MsG0380016661.01.T01 AT2G41310 30.435 138 79 2 55 175 9 146 3.68e-13 69.3
MsG0380016661.01.T01 AT5G62920 28.148 135 88 1 55 180 25 159 6.55e-13 67.8
MsG0380016661.01.T01 AT5G49240 34.091 132 80 3 55 183 42 169 2.41e-12 68.2
MsG0380016661.01.T01 AT3G56380 28.358 134 86 2 55 178 20 153 4.28e-12 64.7
MsG0380016661.01.T01 AT4G00760 31.250 160 102 5 73 230 1 154 1.01e-11 66.6
MsG0380016661.01.T01 AT1G49190 28.689 122 82 2 57 177 36 153 1.44e-11 67.4
MsG0380016661.01.T01 AT1G49190 28.689 122 82 2 57 177 36 153 1.59e-11 66.6
MsG0380016661.01.T01 AT1G68210 24.658 146 103 2 55 197 13 154 5.82e-11 65.5

Find 104 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAATCCCGATTCTCTTTC+TGG 0.070056 3:+86282653 MsG0380016661.01.T01:CDS
TCACCCATGTTGTTGTTTAT+TGG 0.145845 3:-86279298 None:intergenic
CGCACTTCTCACATTAATTA+TGG 0.184807 3:+86280459 MsG0380016661.01.T01:CDS
TCTCTTCCGATTCCTGTAAA+AGG 0.269959 3:+86281937 MsG0380016661.01.T01:CDS
GAGCAGCGTCCTCGAGTTAA+AGG 0.270096 3:+86282614 MsG0380016661.01.T01:CDS
CAAGAACTTGACATTCATTT+AGG 0.270340 3:+86281059 MsG0380016661.01.T01:CDS
TTTATGGATGTGTACTTATT+AGG 0.273699 3:+86282949 MsG0380016661.01.T01:three_prime_UTR
ATGCATCTGCTTGAAAGTTT+TGG 0.280948 3:-86282066 None:intergenic
GGAATTTGTGGCAGCATGTT+TGG 0.301229 3:+86280707 MsG0380016661.01.T01:CDS
GCCGCAACCGCTGGCATAAA+TGG 0.311050 3:+86280861 MsG0380016661.01.T01:CDS
TAAAATTACAACTGTATATC+AGG 0.322906 3:-86282880 None:intergenic
GCCATTTATGCCAGCGGTTG+CGG 0.331299 3:-86280862 None:intergenic
CTATTTGTGTTTACAACAAC+CGG 0.339971 3:+86283031 MsG0380016661.01.T01:three_prime_UTR
TATACGCTGATTCTTGTCTT+TGG 0.341859 3:+86279273 MsG0380016661.01.T01:five_prime_UTR
TGCTGTTGCTGATGGCTTGA+AGG 0.353593 3:+86280357 MsG0380016661.01.T01:CDS
TGCTTGCATTCAAAGAAATA+AGG 0.359592 3:+86280968 MsG0380016661.01.T01:CDS
GTATTGAACTATCTGAGTTA+TGG 0.368410 3:-86281861 None:intergenic
TTTGTTGTGTGCTAAGGTTT+TGG 0.371137 3:+86279223 MsG0380016661.01.T01:five_prime_UTR
GTGTATCACTTTCATCTTGA+GGG 0.373515 3:-86280884 None:intergenic
CTTAGAAAATGCAACTATAA+AGG 0.375160 3:+86279532 MsG0380016661.01.T01:CDS
GTTGTTATTAAATATATATC+AGG 0.402264 3:-86282858 None:intergenic
CAGAACAGCAGCAGTTTCAG+AGG 0.404213 3:+86282345 MsG0380016661.01.T01:CDS
GAGAAGGTGAGGGAAGAAGA+AGG 0.408178 3:+86279370 MsG0380016661.01.T01:CDS
CTTAGTTCATTTATTCGAAT+CGG 0.408502 3:-86280685 None:intergenic
GAGAGTAGAGGAGGAGGTGG+TGG 0.412031 3:+86279403 MsG0380016661.01.T01:CDS
GAGAAGTGCGTAGCCGGATA+TGG 0.417405 3:-86280446 None:intergenic
TGTCCTGCGCGATCACTGCC+TGG 0.417920 3:-86281082 None:intergenic
TTAGCAAATATGTGACTTAG+TGG 0.423094 3:+86282708 MsG0380016661.01.T01:CDS
ACAACTGAACCGAGCATTGA+TGG 0.427911 3:-86282033 None:intergenic
AATGATCTTTGTATGGCCTA+TGG 0.430478 3:+86281970 MsG0380016661.01.T01:CDS
GTCGATTTGCCAGCCATATC+CGG 0.434584 3:+86280433 MsG0380016661.01.T01:CDS
CGATTCCTGTAAAAGGTGTA+AGG 0.438701 3:+86281944 MsG0380016661.01.T01:CDS
CCAGAAAGAGAATCGGGATT+CGG 0.439697 3:-86282653 None:intergenic
TTCAATATCATACTTATGAC+AGG 0.442500 3:-86280505 None:intergenic
TCTTGTGTCTTTATTTCACT+TGG 0.446311 3:-86281041 None:intergenic
ACAAACAAAATACAATTAAC+CGG 0.453998 3:-86283050 None:intergenic
GCAGTTGCTGCTGTTGCTGA+TGG 0.454486 3:+86280349 MsG0380016661.01.T01:intron
ACTGAGAGTAGAGGAGGAGG+TGG 0.456827 3:+86279400 MsG0380016661.01.T01:CDS
CCAGGGTTTCGTACACAATC+AGG 0.457218 3:+86282006 MsG0380016661.01.T01:CDS
AATAAGGACTTAATTGAGAA+AGG 0.462433 3:+86280984 MsG0380016661.01.T01:CDS
AAGGTTAAATGATCTTTGTA+TGG 0.462879 3:+86281963 MsG0380016661.01.T01:CDS
CAGCAGTCAGCCGCAACCGC+TGG 0.465375 3:+86280852 MsG0380016661.01.T01:intron
GTGAAATGAAAGGGCTTATG+AGG 0.465706 3:+86279425 MsG0380016661.01.T01:CDS
TTGCTGATGGCTTGAAGGCA+TGG 0.467739 3:+86280362 MsG0380016661.01.T01:CDS
GGAACTGAGAGTAGAGGAGG+AGG 0.470255 3:+86279397 MsG0380016661.01.T01:CDS
ATTCATGCAGGTATACAAAC+AGG 0.476773 3:+86281764 MsG0380016661.01.T01:intron
TAAATGAACTAAGGAATTTG+TGG 0.487302 3:+86280695 MsG0380016661.01.T01:CDS
GGAGGTGGTGGTGAAATGAA+AGG 0.495607 3:+86279415 MsG0380016661.01.T01:CDS
GAGAAGTTAATTACTACTGC+AGG 0.495962 3:-86281802 None:intergenic
TGCTGATGGCTTGAAGGCAT+GGG 0.496945 3:+86280363 MsG0380016661.01.T01:CDS
AAGAAGAAGAAGAGAAGGTG+AGG 0.497598 3:+86279359 MsG0380016661.01.T01:CDS
TAATGTGAGAAGTGCGTAGC+CGG 0.502440 3:-86280452 None:intergenic
AGAAGGTGAGGGAAGAAGAA+GGG 0.503650 3:+86279371 MsG0380016661.01.T01:CDS
GTGAGGGAAGAAGAAGGGAG+TGG 0.503857 3:+86279376 MsG0380016661.01.T01:CDS
ACTGATTTATCATGTAATGT+TGG 0.511151 3:+86282976 MsG0380016661.01.T01:three_prime_UTR
TGGTGAGAAAATAGTGAGAG+TGG 0.512691 3:+86279333 MsG0380016661.01.T01:CDS
AGAAGAAGAAGAGAAGGTGA+GGG 0.514978 3:+86279360 MsG0380016661.01.T01:CDS
AATGAAAGGGCTTATGAGGT+GGG 0.528311 3:+86279429 MsG0380016661.01.T01:CDS
TGTGTATCACTTTCATCTTG+AGG 0.529215 3:-86280885 None:intergenic
AGTGCGTAGCCGGATATGGC+TGG 0.534736 3:-86280442 None:intergenic
AGTGGAACTGAGAGTAGAGG+AGG 0.535060 3:+86279394 MsG0380016661.01.T01:CDS
TGGTGGAAGTGTTGAACCAT+AGG 0.536921 3:-86281986 None:intergenic
TTCTGATATTTAAGAAGTCA+AGG 0.543301 3:-86282777 None:intergenic
GGGAGTGGAACTGAGAGTAG+AGG 0.544569 3:+86279391 MsG0380016661.01.T01:CDS
ATTCACATCGAGCTATGCTA+CGG 0.546537 3:+86282398 MsG0380016661.01.T01:CDS
CACAGCATATACAGATCAAG+TGG 0.548302 3:-86282800 None:intergenic
GAGGTGGTGGTGAAATGAAA+GGG 0.554612 3:+86279416 MsG0380016661.01.T01:CDS
AACGCTGCTAGTAATCGTTC+CGG 0.555367 3:+86280936 MsG0380016661.01.T01:CDS
CGATTCGAATAAATGAACTA+AGG 0.559225 3:+86280686 MsG0380016661.01.T01:CDS
AAATGAAAGGGCTTATGAGG+TGG 0.560859 3:+86279428 MsG0380016661.01.T01:CDS
ACTTGACATTCATTTAGGCC+AGG 0.566880 3:+86281064 MsG0380016661.01.T01:CDS
AGAACAGCAGCAGTTTCAGA+GGG 0.568196 3:+86282346 MsG0380016661.01.T01:CDS
ATACTGACATGATATTGTAC+AGG 0.573693 3:-86283004 None:intergenic
CAACTTCACATTCTCAGCAA+GGG 0.576831 3:+86281911 MsG0380016661.01.T01:CDS
GCAACTTCACATTCTCAGCA+AGG 0.583947 3:+86281910 MsG0380016661.01.T01:CDS
GGATCCAATAAACAACAACA+TGG 0.585441 3:+86279294 MsG0380016661.01.T01:exon
GAAAGAAAGAAATTTACCTC+CGG 0.593202 3:-86281111 None:intergenic
ATTGGTTATGGAAGTAATTG+CGG 0.597392 3:+86282289 MsG0380016661.01.T01:CDS
TTCACATCGAGCTATGCTAC+GGG 0.598642 3:+86282399 MsG0380016661.01.T01:CDS
AAAGAGAATCGGGATTCGGT+TGG 0.599964 3:-86282649 None:intergenic
TATGGTTCAACACTTCCACC+AGG 0.607254 3:+86281988 MsG0380016661.01.T01:CDS
GGAAGTAATTGCGGAAGTAG+CGG 0.613525 3:+86282298 MsG0380016661.01.T01:CDS
AATGCAAGCAGCATCACCGC+CGG 0.616301 3:-86280955 None:intergenic
ACAAATTGTCCTTTAACTCG+AGG 0.617609 3:-86282623 None:intergenic
TTGAGGGCCATTTATGCCAG+CGG 0.618633 3:-86280868 None:intergenic
ATCGCGCAGGACAGTCACGC+CGG 0.618782 3:+86281092 MsG0380016661.01.T01:CDS
TCAGGTCCACCATCAATGCT+CGG 0.620092 3:+86282024 MsG0380016661.01.T01:CDS
AATAAACAACAACATGGGTG+AGG 0.620435 3:+86279300 MsG0380016661.01.T01:exon
TATATCAGGATCTAGAGGAA+AGG 0.621980 3:-86282844 None:intergenic
AAATATATATCAGGATCTAG+AGG 0.622685 3:-86282849 None:intergenic
CCTGATTGTGTACGAAACCC+TGG 0.626598 3:-86282006 None:intergenic
AAGGCATGGGAAATACTCAA+AGG 0.628269 3:+86280376 MsG0380016661.01.T01:CDS
AATGAAGAACTCACAAACAG+TGG 0.636681 3:+86282373 MsG0380016661.01.T01:CDS
GATCCAATAAACAACAACAT+GGG 0.646005 3:+86279295 MsG0380016661.01.T01:exon
AGGCCAGGCAGTGATCGCGC+AGG 0.648174 3:+86281079 MsG0380016661.01.T01:CDS
ACTGAACCGAGCATTGATGG+TGG 0.658354 3:-86282030 None:intergenic
GTATACAAATGCATGTTGAG+AGG 0.663604 3:+86280640 MsG0380016661.01.T01:CDS
ATGGTTCAACACTTCCACCA+GGG 0.675718 3:+86281989 MsG0380016661.01.T01:CDS
GCGCAGGACAGTCACGCCGG+AGG 0.678639 3:+86281095 MsG0380016661.01.T01:CDS
GCTGCTAGTAATCGTTCCGG+CGG 0.691660 3:+86280939 MsG0380016661.01.T01:CDS
TCAATATCATACTTATGACA+GGG 0.693313 3:-86280504 None:intergenic
ATGGGTGAGGTTGTAATGAG+TGG 0.695889 3:+86279313 MsG0380016661.01.T01:CDS
GATTGTGTACGAAACCCTGG+TGG 0.767923 3:-86282003 None:intergenic
AGTATCAGATCAATACTGCG+CGG 0.783873 3:-86280403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTTTTTTTTTTTA+TGG + Chr3:86282933-86282952 MsG0380016661.01.T01:three_prime_UTR 0.0%
!! TAATAATTACAAAAATTAAG+GGG + Chr3:86279959-86279978 MsG0380016661.01.T01:intron 10.0%
!!! GTACAATTTTTTTTTTTTTT+TGG + Chr3:86279731-86279750 MsG0380016661.01.T01:intron 10.0%
!! AAACGAAAAATTAGAATAAA+AGG - Chr3:86281586-86281605 None:intergenic 15.0%
!! AACGAAAAATTAGAATAAAA+GGG - Chr3:86281585-86281604 None:intergenic 15.0%
!! AAGAAGTTATTAACAAAATT+GGG + Chr3:86280798-86280817 MsG0380016661.01.T01:intron 15.0%
!! TAAGAAGTTATTAACAAAAT+TGG + Chr3:86280797-86280816 MsG0380016661.01.T01:intron 15.0%
!!! ACTTATTTATACTTTTTAAC+AGG + Chr3:86282560-86282579 MsG0380016661.01.T01:intron 15.0%
!!! ATTATTGAGTTTTATTATCT+TGG + Chr3:86280240-86280259 MsG0380016661.01.T01:intron 15.0%
!!! GTTGTTATTAAATATATATC+AGG - Chr3:86282861-86282880 None:intergenic 15.0%
!!! TTGAACAAACTTTTATTTTT+AGG + Chr3:86281181-86281200 MsG0380016661.01.T01:intron 15.0%
!! ACAAACAAAATACAATTAAC+CGG - Chr3:86283053-86283072 None:intergenic 20.0%
!! ACAACAAAAAATATCCAATT+TGG - Chr3:86279211-86279230 None:intergenic 20.0%
!! ATTAGAAATTTAGAAGTCTT+TGG + Chr3:86279871-86279890 MsG0380016661.01.T01:intron 20.0%
!! GTAAATATTAGGTTATATTG+AGG + Chr3:86279777-86279796 MsG0380016661.01.T01:intron 20.0%
!! TAAAATTACAACTGTATATC+AGG - Chr3:86282883-86282902 None:intergenic 20.0%
!!! GTTAATTGTATTTTGTTTGT+TGG + Chr3:86283053-86283072 MsG0380016661.01.T01:three_prime_UTR 20.0%
! AAAATCATAATTGATTGCAC+AGG + Chr3:86281428-86281447 MsG0380016661.01.T01:intron 25.0%
! AAAGAGAGATTATGAAAAGA+AGG + Chr3:86282454-86282473 MsG0380016661.01.T01:intron 25.0%
! AAATATATATCAGGATCTAG+AGG - Chr3:86282852-86282871 None:intergenic 25.0%
! AAGAACTTCAAAACATGATA+CGG + Chr3:86281647-86281666 MsG0380016661.01.T01:intron 25.0%
! AAGGTTAAATGATCTTTGTA+TGG + Chr3:86281963-86281982 MsG0380016661.01.T01:CDS 25.0%
! AATAAGGACTTAATTGAGAA+AGG + Chr3:86280984-86281003 MsG0380016661.01.T01:CDS 25.0%
! AATATTGCTGTGTGTTTAAT+TGG + Chr3:86279607-86279626 MsG0380016661.01.T01:intron 25.0%
! AATTACAAAAATTAAGGGGA+TGG + Chr3:86279963-86279982 MsG0380016661.01.T01:intron 25.0%
! CAAAAAATATCCAATTTGGA+AGG - Chr3:86279207-86279226 None:intergenic 25.0%
! CTTAGAAAATGCAACTATAA+AGG + Chr3:86279532-86279551 MsG0380016661.01.T01:CDS 25.0%
! CTTAGTTCATTTATTCGAAT+CGG - Chr3:86280688-86280707 None:intergenic 25.0%
! TAAATGAACTAAGGAATTTG+TGG + Chr3:86280695-86280714 MsG0380016661.01.T01:CDS 25.0%
! TAGAACTTAGATTTACTTTC+AGG - Chr3:86280299-86280318 None:intergenic 25.0%
! TCAAATTTACTCTACTACTA+AGG + Chr3:86281354-86281373 MsG0380016661.01.T01:intron 25.0%
! TCAATATCATACTTATGACA+GGG - Chr3:86280507-86280526 None:intergenic 25.0%
! TCCAGTAGTATTTGTAATAA+TGG + Chr3:86282245-86282264 MsG0380016661.01.T01:intron 25.0%
! TCCATTATTACAAATACTAC+TGG - Chr3:86282249-86282268 None:intergenic 25.0%
! TTCAATATCATACTTATGAC+AGG - Chr3:86280508-86280527 None:intergenic 25.0%
! TTCTGATATTTAAGAAGTCA+AGG - Chr3:86282780-86282799 None:intergenic 25.0%
! TTTATGGATGTGTACTTATT+AGG + Chr3:86282949-86282968 MsG0380016661.01.T01:three_prime_UTR 25.0%
!! ACTGATTTATCATGTAATGT+TGG + Chr3:86282976-86282995 MsG0380016661.01.T01:three_prime_UTR 25.0%
!!! ATATTTTTTGTTGTGTGCTA+AGG + Chr3:86279217-86279236 MsG0380016661.01.T01:five_prime_UTR 25.0%
!!! TTATTTTTCACCTTCCAAAT+TGG + Chr3:86279194-86279213 MsG0380016661.01.T01:five_prime_UTR 25.0%
!!! TTTATTTTTAGGATTAAGCG+TGG + Chr3:86281192-86281211 MsG0380016661.01.T01:intron 25.0%
!!! TTTTTTAAAGAGAAGTGACA+TGG + Chr3:86280087-86280106 MsG0380016661.01.T01:intron 25.0%
AAACCAAATTGTGTATACAC+AGG + Chr3:86282163-86282182 MsG0380016661.01.T01:intron 30.0%
ATACACTTTGATCAGTTGTA+GGG - Chr3:86282226-86282245 None:intergenic 30.0%
ATACTGACATGATATTGTAC+AGG - Chr3:86283007-86283026 None:intergenic 30.0%
ATAGCAGTATGGAAATTACT+AGG + Chr3:86280162-86280181 MsG0380016661.01.T01:intron 30.0%
ATTGGTTATGGAAGTAATTG+CGG + Chr3:86282289-86282308 MsG0380016661.01.T01:CDS 30.0%
CAAGAACTTGACATTCATTT+AGG + Chr3:86281059-86281078 MsG0380016661.01.T01:CDS 30.0%
CGATTCGAATAAATGAACTA+AGG + Chr3:86280686-86280705 MsG0380016661.01.T01:CDS 30.0%
CTATTTGTGTTTACAACAAC+CGG + Chr3:86283031-86283050 MsG0380016661.01.T01:three_prime_UTR 30.0%
GAAAGAAAGAAATTTACCTC+CGG - Chr3:86281114-86281133 None:intergenic 30.0%
GAATAATTGCACCAAGTTTA+TGG - Chr3:86280193-86280212 None:intergenic 30.0%
GATCCAATAAACAACAACAT+GGG + Chr3:86279295-86279314 MsG0380016661.01.T01:exon 30.0%
GGAAAGGCAAAAAAGAAAAA+TGG - Chr3:86282831-86282850 None:intergenic 30.0%
GTATTGAACTATCTGAGTTA+TGG - Chr3:86281864-86281883 None:intergenic 30.0%
TGCTATAAGACTCTATTTCA+AGG - Chr3:86280148-86280167 None:intergenic 30.0%
TGCTTGCATTCAAAGAAATA+AGG + Chr3:86280968-86280987 MsG0380016661.01.T01:CDS 30.0%
TGTGTATACACAATTTGGTT+TGG - Chr3:86282164-86282183 None:intergenic 30.0%
TTAGCAAATATGTGACTTAG+TGG + Chr3:86282708-86282727 MsG0380016661.01.T01:CDS 30.0%
! AATAGAGTCTTATAGCAGTA+TGG + Chr3:86280151-86280170 MsG0380016661.01.T01:intron 30.0%
! ATCTCTCTTTTCGTTTCAAA+CGG - Chr3:86282444-86282463 None:intergenic 30.0%
! GTGTATGATTTTTATGCTTG+TGG + Chr3:86281686-86281705 MsG0380016661.01.T01:intron 30.0%
! TCTTGTGTCTTTATTTCACT+TGG - Chr3:86281044-86281063 None:intergenic 30.0%
! TTTAACCTTACACCTTTTAC+AGG - Chr3:86281952-86281971 None:intergenic 30.0%
! TTTTGTTAGCTGAGAATCTT+AGG + Chr3:86280111-86280130 MsG0380016661.01.T01:intron 30.0%
!!! TGATTTTTGAGACTGCAATT+CGG - Chr3:86281415-86281434 None:intergenic 30.0%
AATAAACAACAACATGGGTG+AGG + Chr3:86279300-86279319 MsG0380016661.01.T01:exon 35.0%
AATGAAGAACTCACAAACAG+TGG + Chr3:86282373-86282392 MsG0380016661.01.T01:CDS 35.0%
AATGATCTTTGTATGGCCTA+TGG + Chr3:86281970-86281989 MsG0380016661.01.T01:CDS 35.0%
ACAAATTGTCCTTTAACTCG+AGG - Chr3:86282626-86282645 None:intergenic 35.0%
ACTAGGTTAAGCCATAAACT+TGG + Chr3:86280179-86280198 MsG0380016661.01.T01:intron 35.0%
ATTACTTCCATAACCAATGC+TGG - Chr3:86282287-86282306 None:intergenic 35.0%
ATTCATGCAGGTATACAAAC+AGG + Chr3:86281764-86281783 MsG0380016661.01.T01:intron 35.0%
CGCACTTCTCACATTAATTA+TGG + Chr3:86280459-86280478 MsG0380016661.01.T01:CDS 35.0%
GAGAAGTTAATTACTACTGC+AGG - Chr3:86281805-86281824 None:intergenic 35.0%
GATACACTTTGATCAGTTGT+AGG - Chr3:86282227-86282246 None:intergenic 35.0%
GGAGAAATTCTTGCCAAAAA+TGG + Chr3:86279450-86279469 MsG0380016661.01.T01:CDS 35.0%
GGATCCAATAAACAACAACA+TGG + Chr3:86279294-86279313 MsG0380016661.01.T01:exon 35.0%
GTATACAAATGCATGTTGAG+AGG + Chr3:86280640-86280659 MsG0380016661.01.T01:CDS 35.0%
GTGTATCACTTTCATCTTGA+GGG - Chr3:86280887-86280906 None:intergenic 35.0%
GTTCCTGTGTATACACAATT+TGG - Chr3:86282169-86282188 None:intergenic 35.0%
TACACTTTGATCAGTTGTAG+GGG - Chr3:86282225-86282244 None:intergenic 35.0%
TATATCAGGATCTAGAGGAA+AGG - Chr3:86282847-86282866 None:intergenic 35.0%
TGTGTATCACTTTCATCTTG+AGG - Chr3:86280888-86280907 None:intergenic 35.0%
TGTTTGTATACCTGCATGAA+TGG - Chr3:86281765-86281784 None:intergenic 35.0%
! AGTCTTTGGACTGCAAATTT+TGG + Chr3:86279885-86279904 MsG0380016661.01.T01:intron 35.0%
! ATGCATCTGCTTGAAAGTTT+TGG - Chr3:86282069-86282088 None:intergenic 35.0%
! CTTACACCTTTTACAGGAAT+CGG - Chr3:86281946-86281965 None:intergenic 35.0%
! CTTTTCTCCAGAAAGAGAAT+CGG - Chr3:86282663-86282682 None:intergenic 35.0%
! TCAGATTCTTTTTGCATGCT+TGG - Chr3:86281886-86281905 None:intergenic 35.0%
! TTTTCTCCAGAAAGAGAATC+GGG - Chr3:86282662-86282681 None:intergenic 35.0%
!! AAGGAAGCTATTGACTTGAT+TGG + Chr3:86281373-86281392 MsG0380016661.01.T01:intron 35.0%
!! GCAAATTTTGGAAAGGATCA+AGG + Chr3:86279897-86279916 MsG0380016661.01.T01:intron 35.0%
!! TATACGCTGATTCTTGTCTT+TGG + Chr3:86279273-86279292 MsG0380016661.01.T01:five_prime_UTR 35.0%
!! TCACCCATGTTGTTGTTTAT+TGG - Chr3:86279301-86279320 None:intergenic 35.0%
!! TCTTGCCAAAAATGGTTTTG+AGG + Chr3:86279458-86279477 MsG0380016661.01.T01:CDS 35.0%
!! TGAAGCATTGGAATGCATAA+GGG - Chr3:86281539-86281558 None:intergenic 35.0%
!! TTGGACTGCAAATTTTGGAA+AGG + Chr3:86279890-86279909 MsG0380016661.01.T01:intron 35.0%
!! TTTGTTGTGTGCTAAGGTTT+TGG + Chr3:86279223-86279242 MsG0380016661.01.T01:five_prime_UTR 35.0%
!!! CAATTTTCCAGCATTGGTTA+TGG + Chr3:86282277-86282296 MsG0380016661.01.T01:intron 35.0%
!!! CTTGCCAAAAATGGTTTTGA+GGG + Chr3:86279459-86279478 MsG0380016661.01.T01:CDS 35.0%
AAATGAAAGGGCTTATGAGG+TGG + Chr3:86279428-86279447 MsG0380016661.01.T01:CDS 40.0%
AAATGGTGTTCCATTCATGC+AGG + Chr3:86281752-86281771 MsG0380016661.01.T01:intron 40.0%
AACCAATGCTGGAAAATTGC+TGG - Chr3:86282276-86282295 None:intergenic 40.0%
AAGAAGAAGAAGAGAAGGTG+AGG + Chr3:86279359-86279378 MsG0380016661.01.T01:CDS 40.0%
AAGCGCAAATAATTGCAGGA+CGG + Chr3:86281272-86281291 MsG0380016661.01.T01:intron 40.0%
AAGGCATGGGAAATACTCAA+AGG + Chr3:86280376-86280395 MsG0380016661.01.T01:CDS 40.0%
AATGAAAGGGCTTATGAGGT+GGG + Chr3:86279429-86279448 MsG0380016661.01.T01:CDS 40.0%
ACTTGACATTCATTTAGGCC+AGG + Chr3:86281064-86281083 MsG0380016661.01.T01:CDS 40.0%
AGAAGAAGAAGAGAAGGTGA+GGG + Chr3:86279360-86279379 MsG0380016661.01.T01:CDS 40.0%
AGACAAGCGCAAATAATTGC+AGG + Chr3:86281268-86281287 MsG0380016661.01.T01:intron 40.0%
AGCATGCAGATTCAACAAAG+CGG - Chr3:86281724-86281743 None:intergenic 40.0%
AGTATCAGATCAATACTGCG+CGG - Chr3:86280406-86280425 None:intergenic 40.0%
ATTCACATCGAGCTATGCTA+CGG + Chr3:86282398-86282417 MsG0380016661.01.T01:CDS 40.0%
ATTTAGGAATGCTAGCACAG+TGG + Chr3:86281310-86281329 MsG0380016661.01.T01:intron 40.0%
CAACTTCACATTCTCAGCAA+GGG + Chr3:86281911-86281930 MsG0380016661.01.T01:CDS 40.0%
CACAGCATATACAGATCAAG+TGG - Chr3:86282803-86282822 None:intergenic 40.0%
CTGCATGCTTATCACTGAAA+TGG + Chr3:86281735-86281754 MsG0380016661.01.T01:intron 40.0%
GAAAGATCAACTGTGGAGAA+TGG - Chr3:86281462-86281481 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAGA+AGG + Chr3:86279354-86279373 MsG0380016661.01.T01:CDS 40.0%
GTGAAATGAAAGGGCTTATG+AGG + Chr3:86279425-86279444 MsG0380016661.01.T01:CDS 40.0%
GTTTGGAGAAGACAATCAGT+AGG + Chr3:86280724-86280743 MsG0380016661.01.T01:intron 40.0%
TCCAATGCTTCAGCTTTCAA+CGG + Chr3:86281547-86281566 MsG0380016661.01.T01:intron 40.0%
TCTCTTCCGATTCCTGTAAA+AGG + Chr3:86281937-86281956 MsG0380016661.01.T01:CDS 40.0%
TCTGAGAGAAAGATCAACTG+TGG - Chr3:86281469-86281488 None:intergenic 40.0%
TGGTGAGAAAATAGTGAGAG+TGG + Chr3:86279333-86279352 MsG0380016661.01.T01:CDS 40.0%
TTTAGGAATGCTAGCACAGT+GGG + Chr3:86281311-86281330 MsG0380016661.01.T01:intron 40.0%
! AGCACCCTCAAAACCATTTT+TGG - Chr3:86279466-86279485 None:intergenic 40.0%
! CGATTCCTGTAAAAGGTGTA+AGG + Chr3:86281944-86281963 MsG0380016661.01.T01:CDS 40.0%
!! ATCATTTTGTTCGACTCGCA+AGG + Chr3:86281142-86281161 MsG0380016661.01.T01:CDS 40.0%
!! CTGAAGCATTGGAATGCATA+AGG - Chr3:86281540-86281559 None:intergenic 40.0%
!!! AATGGTTTTGAGGGTGCTTT+TGG + Chr3:86279468-86279487 MsG0380016661.01.T01:CDS 40.0%
!!! TGCTTGAAAGTTTTGGTTCG+AGG - Chr3:86282062-86282081 None:intergenic 40.0%
AACGCTGCTAGTAATCGTTC+CGG + Chr3:86280936-86280955 MsG0380016661.01.T01:CDS 45.0%
ACCGTTGAAAGCTGAAGCAT+TGG - Chr3:86281551-86281570 None:intergenic 45.0%
AGAACAGCAGCAGTTTCAGA+GGG + Chr3:86282346-86282365 MsG0380016661.01.T01:CDS 45.0%
AGAAGGTGAGGGAAGAAGAA+GGG + Chr3:86279371-86279390 MsG0380016661.01.T01:CDS 45.0%
AGCGTGGCTAACTGCAAAAA+TGG + Chr3:86281208-86281227 MsG0380016661.01.T01:intron 45.0%
ATGGGTGAGGTTGTAATGAG+TGG + Chr3:86279313-86279332 MsG0380016661.01.T01:CDS 45.0%
ATGGTTCAACACTTCCACCA+GGG + Chr3:86281989-86282008 MsG0380016661.01.T01:CDS 45.0%
CCAGAAAGAGAATCGGGATT+CGG - Chr3:86282656-86282675 None:intergenic 45.0%
GAGATCCTCTCAAAGTTGCT+GGG - Chr3:86281500-86281519 None:intergenic 45.0%
GCAACTTCACATTCTCAGCA+AGG + Chr3:86281910-86281929 MsG0380016661.01.T01:CDS 45.0%
GGAACACAAGTCAGAACATC+CGG + Chr3:86282184-86282203 MsG0380016661.01.T01:intron 45.0%
GGAAGTAATTGCGGAAGTAG+CGG + Chr3:86282298-86282317 MsG0380016661.01.T01:CDS 45.0%
GGAATTTGTGGCAGCATGTT+TGG + Chr3:86280707-86280726 MsG0380016661.01.T01:CDS 45.0%
GGCTAACTGCAAAAATGGAG+TGG + Chr3:86281213-86281232 MsG0380016661.01.T01:intron 45.0%
GGGGAGATAAGTCTTTGATC+CGG - Chr3:86282206-86282225 None:intergenic 45.0%
TATGGTTCAACACTTCCACC+AGG + Chr3:86281988-86282007 MsG0380016661.01.T01:CDS 45.0%
TGAGATCCTCTCAAAGTTGC+TGG - Chr3:86281501-86281520 None:intergenic 45.0%
TGGAAAGGATCAAGGCTCAA+GGG + Chr3:86279905-86279924 MsG0380016661.01.T01:intron 45.0%
TTCACATCGAGCTATGCTAC+GGG + Chr3:86282399-86282418 MsG0380016661.01.T01:CDS 45.0%
TTCATCCCAGCAACTTTGAG+AGG + Chr3:86281492-86281511 MsG0380016661.01.T01:intron 45.0%
TTGGAAAGGATCAAGGCTCA+AGG + Chr3:86279904-86279923 MsG0380016661.01.T01:intron 45.0%
! AAAGAGAATCGGGATTCGGT+TGG - Chr3:86282652-86282671 None:intergenic 45.0%
! CATAAGGGTGTGCCTTTCTT+CGG - Chr3:86281524-86281543 None:intergenic 45.0%
! GAGGTGGTGGTGAAATGAAA+GGG + Chr3:86279416-86279435 MsG0380016661.01.T01:CDS 45.0%
! TAATGTGAGAAGTGCGTAGC+CGG - Chr3:86280455-86280474 None:intergenic 45.0%
! TGCCAGCAATTTTCCAGCAT+TGG + Chr3:86282271-86282290 MsG0380016661.01.T01:intron 45.0%
!! ACAACTGAACCGAGCATTGA+TGG - Chr3:86282036-86282055 None:intergenic 45.0%
!! GCGATGATCAAGAGGCATTT+AGG + Chr3:86281294-86281313 MsG0380016661.01.T01:intron 45.0%
!! TGGTGGAAGTGTTGAACCAT+AGG - Chr3:86281989-86282008 None:intergenic 45.0%
!! AATTAATTTAAGTATTAATA+AGG - Chr3:86280563-86280582 None:intergenic 5.0%
!! TTAATAATTACAAAAATTAA+GGG + Chr3:86279958-86279977 MsG0380016661.01.T01:intron 5.0%
!! TTTAATAATTACAAAAATTA+AGG + Chr3:86279957-86279976 MsG0380016661.01.T01:intron 5.0%
!! TTTAATTAATTGTAAATATT+AGG + Chr3:86279766-86279785 MsG0380016661.01.T01:intron 5.0%
AGTGGAACTGAGAGTAGAGG+AGG + Chr3:86279394-86279413 MsG0380016661.01.T01:CDS 50.0%
CAGAACAGCAGCAGTTTCAG+AGG + Chr3:86282345-86282364 MsG0380016661.01.T01:CDS 50.0%
CCAGGGTTTCGTACACAATC+AGG + Chr3:86282006-86282025 MsG0380016661.01.T01:CDS 50.0%
CCGAATCCCGATTCTCTTTC+TGG + Chr3:86282653-86282672 MsG0380016661.01.T01:CDS 50.0%
CCTGATTGTGTACGAAACCC+TGG - Chr3:86282009-86282028 None:intergenic 50.0%
GAATCTTGCGACGACATCAC+TGG - Chr3:86280610-86280629 None:intergenic 50.0%
GAGAAGGTGAGGGAAGAAGA+AGG + Chr3:86279370-86279389 MsG0380016661.01.T01:CDS 50.0%
GAGAGGATCTCACCGAAGAA+AGG + Chr3:86281509-86281528 MsG0380016661.01.T01:intron 50.0%
GATTGTGTACGAAACCCTGG+TGG - Chr3:86282006-86282025 None:intergenic 50.0%
TACGAACCTCGCGGTCTAAA+GGG + Chr3:86282128-86282147 MsG0380016661.01.T01:intron 50.0%
TCAGGTCCACCATCAATGCT+CGG + Chr3:86282024-86282043 MsG0380016661.01.T01:CDS 50.0%
TGCTGTTGCTGATGGCTTGA+AGG + Chr3:86280357-86280376 MsG0380016661.01.T01:CDS 50.0%
TTACGAACCTCGCGGTCTAA+AGG + Chr3:86282127-86282146 MsG0380016661.01.T01:intron 50.0%
TTGAGGGCCATTTATGCCAG+CGG - Chr3:86280871-86280890 None:intergenic 50.0%
TTGCTGATGGCTTGAAGGCA+TGG + Chr3:86280362-86280381 MsG0380016661.01.T01:CDS 50.0%
! GGAGGTGGTGGTGAAATGAA+AGG + Chr3:86279415-86279434 MsG0380016661.01.T01:CDS 50.0%
! TGCTGATGGCTTGAAGGCAT+GGG + Chr3:86280363-86280382 MsG0380016661.01.T01:CDS 50.0%
!! ACTGAACCGAGCATTGATGG+TGG - Chr3:86282033-86282052 None:intergenic 50.0%
!! AGCAGCGTTGTTTTCAGCAG+TGG - Chr3:86280925-86280944 None:intergenic 50.0%
!! GTCGATTTGCCAGCCATATC+CGG + Chr3:86280433-86280452 MsG0380016661.01.T01:CDS 50.0%
AATGCAAGCAGCATCACCGC+CGG - Chr3:86280958-86280977 None:intergenic 55.0%
ACTGAGAGTAGAGGAGGAGG+TGG + Chr3:86279400-86279419 MsG0380016661.01.T01:CDS 55.0%
AGGAATGCTAGCACAGTGGG+AGG + Chr3:86281314-86281333 MsG0380016661.01.T01:intron 55.0%
CTGTTTCCCTTTAGACCGCG+AGG - Chr3:86282137-86282156 None:intergenic 55.0%
GAGCAGCGTCCTCGAGTTAA+AGG + Chr3:86282614-86282633 MsG0380016661.01.T01:CDS 55.0%
GAGCAGCTTTACGAACCTCG+CGG + Chr3:86282119-86282138 MsG0380016661.01.T01:intron 55.0%
GCAGTTGCTGCTGTTGCTGA+TGG + Chr3:86280349-86280368 MsG0380016661.01.T01:intron 55.0%
GCCATTTATGCCAGCGGTTG+CGG - Chr3:86280865-86280884 None:intergenic 55.0%
GCTGCTAGTAATCGTTCCGG+CGG + Chr3:86280939-86280958 MsG0380016661.01.T01:CDS 55.0%
GGAACTGAGAGTAGAGGAGG+AGG + Chr3:86279397-86279416 MsG0380016661.01.T01:CDS 55.0%
GGGAGTGGAACTGAGAGTAG+AGG + Chr3:86279391-86279410 MsG0380016661.01.T01:CDS 55.0%
GTGAGGGAAGAAGAAGGGAG+TGG + Chr3:86279376-86279395 MsG0380016661.01.T01:CDS 55.0%
! GAGAAGTGCGTAGCCGGATA+TGG - Chr3:86280449-86280468 None:intergenic 55.0%
AGTGCGTAGCCGGATATGGC+TGG - Chr3:86280445-86280464 None:intergenic 60.0%
GAGAGTAGAGGAGGAGGTGG+TGG + Chr3:86279403-86279422 MsG0380016661.01.T01:CDS 60.0%
GCAGGACGGCGATGATCAAG+AGG + Chr3:86281286-86281305 MsG0380016661.01.T01:intron 60.0%
GCCGCAACCGCTGGCATAAA+TGG + Chr3:86280861-86280880 MsG0380016661.01.T01:CDS 60.0%
ATCGCGCAGGACAGTCACGC+CGG + Chr3:86281092-86281111 MsG0380016661.01.T01:CDS 65.0%
TGTCCTGCGCGATCACTGCC+TGG - Chr3:86281085-86281104 None:intergenic 65.0%
AGGCCAGGCAGTGATCGCGC+AGG + Chr3:86281079-86281098 MsG0380016661.01.T01:CDS 70.0%
CAGCAGTCAGCCGCAACCGC+TGG + Chr3:86280852-86280871 MsG0380016661.01.T01:intron 70.0%
GCGCAGGACAGTCACGCCGG+AGG + Chr3:86281095-86281114 MsG0380016661.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 86279186 86283112 86279186 ID=MsG0380016661.01;Name=MsG0380016661.01
Chr3 mRNA 86279186 86283112 86279186 ID=MsG0380016661.01.T01;Parent=MsG0380016661.01;Name=MsG0380016661.01.T01;_AED=0.48;_eAED=0.49;_QI=127|0.5|0.57|1|1|1|7|385|490
Chr3 exon 86279186 86279553 86279186 ID=MsG0380016661.01.T01:exon:22172;Parent=MsG0380016661.01.T01
Chr3 exon 86280353 86280514 86280353 ID=MsG0380016661.01.T01:exon:22173;Parent=MsG0380016661.01.T01
Chr3 exon 86280611 86280741 86280611 ID=MsG0380016661.01.T01:exon:22174;Parent=MsG0380016661.01.T01
Chr3 exon 86280855 86281171 86280855 ID=MsG0380016661.01.T01:exon:22175;Parent=MsG0380016661.01.T01
Chr3 exon 86281774 86282094 86281774 ID=MsG0380016661.01.T01:exon:22176;Parent=MsG0380016661.01.T01
Chr3 exon 86282288 86282442 86282288 ID=MsG0380016661.01.T01:exon:22177;Parent=MsG0380016661.01.T01
Chr3 exon 86282582 86283112 86282582 ID=MsG0380016661.01.T01:exon:22178;Parent=MsG0380016661.01.T01
Chr3 five_prime_UTR 86279186 86279312 86279186 ID=MsG0380016661.01.T01:five_prime_utr;Parent=MsG0380016661.01.T01
Chr3 CDS 86279313 86279553 86279313 ID=MsG0380016661.01.T01:cds;Parent=MsG0380016661.01.T01
Chr3 CDS 86280353 86280514 86280353 ID=MsG0380016661.01.T01:cds;Parent=MsG0380016661.01.T01
Chr3 CDS 86280611 86280741 86280611 ID=MsG0380016661.01.T01:cds;Parent=MsG0380016661.01.T01
Chr3 CDS 86280855 86281171 86280855 ID=MsG0380016661.01.T01:cds;Parent=MsG0380016661.01.T01
Chr3 CDS 86281774 86282094 86281774 ID=MsG0380016661.01.T01:cds;Parent=MsG0380016661.01.T01
Chr3 CDS 86282288 86282442 86282288 ID=MsG0380016661.01.T01:cds;Parent=MsG0380016661.01.T01
Chr3 CDS 86282582 86282727 86282582 ID=MsG0380016661.01.T01:cds;Parent=MsG0380016661.01.T01
Chr3 three_prime_UTR 86282728 86283112 86282728 ID=MsG0380016661.01.T01:three_prime_utr;Parent=MsG0380016661.01.T01
Gene Sequence

>MsG0380016661.01.T01

ATGGGTGAGGTTGTAATGAGTGGTGAGAAAATAGTGAGAGTGGAAGAAGAAGAAGAAGAGAAGGTGAGGGAAGAAGAAGGGAGTGGAACTGAGAGTAGAGGAGGAGGTGGTGGTGAAATGAAAGGGCTTATGAGGTGGGAGAAATTCTTGCCAAAAATGGTTTTGAGGGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATTACAGCACTTCTTAGAAAATGCAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATACTCAAAGGAAGACCGCGCAGTATTGATCTGATACTTACAGAAGTCGATTTGCCAGCCATATCCGGCTACGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAGAGCATCCCTGTCATAATGATGTCGTCGCAAGATTCAGTTAGCACAGTATACAAATGCATGTTGAGAGGTGCAGCTGACTATCTTGTTAAGCCGATTCGAATAAATGAACTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCACAGTCAGCCGCAACCGCTGGCATAAATGGCCCTCAAGATGAAAGTGATACACAACAGAAGTTTGAAGCCACTGCTGAAAACAACGCTGCTAGTAATCGTTCCGGCGGTGATGCTGCTTGCATTCAAAGAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTGCTGAAGCATATCCAAGTGAAATAAAGACACAAGAACTTGACATTCATTTAGGCCAGGCAGTGATCGCGCAGGACAGTCACGCCGGAGGTAAATTTCTTTCTTTCACAGCAATATCATTTTGTTCGACTCGCAAGGAAGAATTGTATACAAACAGGCAATTGCAAGCGTCACCTGCAGTAGTAATTAACTTCTCTGATCAACAAAGAGAACAAAAAACAAATAATGAGAACCATAACTCAGATAGTTCAATACCAAGCATGCAAAAAGAATCTGAACTTGCAACTTCACATTCTCAGCAAGGGCATTCTCTTCCGATTCCTGTAAAAGGTGTAAGGTTAAATGATCTTTGTATGGCCTATGGTTCAACACTTCCACCAGGGTTTCGTACACAATCAGGTCCACCATCAATGCTCGGTTCAGTTGTGTTCCTCGAACCAAAACTTTCAAGCAGATGCATTTATCACATTGGTTATGGAAGTAATTGCGGAAGTAGCGGCAATGTTGAACAAGTTGCAACTTTCAGAACAGCAGCAGTTTCAGAGGGAAAGAATGAAGAACTCACAAACAGTGGATATTCACATCGAGCTATGCTACGGGAAGCAGCTCTAAACAAGTTCCGTTCGATGTATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAACCGAATCCCGATTCTCTTTCTGGAGAAAAGATTGCTAAGAATACTGATTATTACATTAGCAAATATGTGACTTAG
Protein sequence

>MsG0380016661.01.T01

MGEVVMSGEKIVRVEEEEEEKVREEEGSGTESRGGGGGEMKGLMRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRSIDLILTEVDLPAISGYALLTLIMEHDICKSIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHVWRRQSQSAATAGINGPQDESDTQQKFEATAENNAASNRSGGDAACIQRNKDLIEKGSDAQSSCAEAYPSEIKTQELDIHLGQAVIAQDSHAGGKFLSFTAISFCSTRKEELYTNRQLQASPAVVINFSDQQREQKTNNENHNSDSSIPSMQKESELATSHSQQGHSLPIPVKGVRLNDLCMAYGSTLPPGFRTQSGPPSMLGSVVFLEPKLSSRCIYHIGYGSNCGSSGNVEQVATFRTAAVSEGKNEELTNSGYSHRAMLREAALNKFRSMYESRKKLAEQRPRVKGQFVRQPNPDSLSGEKIAKNTDYYISKYVT*