AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003420.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003420.01.T01 MTR_1g061510 95.652 483 21 0 1 483 1 483 0.0 959
MsG0180003420.01.T01 MTR_7g103590 85.146 478 71 0 3 480 12 489 0.0 877
MsG0180003420.01.T01 MTR_1g061270 84.472 483 74 1 1 483 1 482 0.0 862
MsG0180003420.01.T01 MTR_1g061280 83.644 483 79 0 1 483 1 483 0.0 858
MsG0180003420.01.T01 MTR_1g061340 81.781 483 88 0 1 483 1 483 0.0 843
MsG0180003420.01.T01 MTR_1g492700 77.447 470 105 1 4 472 10 479 0.0 763
MsG0180003420.01.T01 MTR_4g055520 68.487 476 144 2 14 484 23 497 0.0 713
MsG0180003420.01.T01 MTR_4g055520 69.462 465 137 1 14 473 23 487 0.0 712
MsG0180003420.01.T01 MTR_7g101950 63.771 472 168 2 15 484 21 491 0.0 661
MsG0180003420.01.T01 MTR_4g055520 71.026 390 107 2 100 484 29 417 0.0 604
MsG0180003420.01.T01 MTR_6g007807 45.182 467 249 3 18 483 139 599 9.66e-146 432
MsG0180003420.01.T01 MTR_3g103500 47.018 436 226 3 19 453 171 602 3.70e-142 424
MsG0180003420.01.T01 MTR_4g006010 44.583 480 260 3 10 486 162 638 6.46e-142 424
MsG0180003420.01.T01 MTR_3g109040 45.652 460 241 4 19 477 144 595 1.59e-139 417
MsG0180003420.01.T01 MTR_3g109040 45.652 460 241 4 19 477 155 606 3.23e-139 417
MsG0180003420.01.T01 MTR_8g012320 45.843 445 235 3 6 448 160 600 3.65e-129 391
MsG0180003420.01.T01 MTR_3g103500 49.844 321 157 2 19 338 171 488 2.44e-106 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003420.01.T01 AT5G03760 78.216 482 105 0 2 483 12 493 0.0 820
MsG0180003420.01.T01 AT5G22740 71.042 480 137 1 2 479 12 491 0.0 748
MsG0180003420.01.T01 AT1G23480 68.041 485 153 2 1 483 32 516 0.0 708
MsG0180003420.01.T01 AT1G23480 68.041 485 153 2 1 483 32 516 0.0 708
MsG0180003420.01.T01 AT1G23480 71.847 444 124 1 41 483 1 444 0.0 687
MsG0180003420.01.T01 AT4G13410 65.784 453 155 0 2 454 26 478 0.0 684
MsG0180003420.01.T01 AT2G35650 67.312 465 149 2 19 483 51 512 0.0 681
MsG0180003420.01.T01 AT1G24070 63.223 484 176 2 1 483 35 517 0.0 670
MsG0180003420.01.T01 AT5G16190 65.806 465 158 1 19 483 6 469 0.0 664
MsG0180003420.01.T01 AT2G35650 68.623 443 136 2 41 483 1 440 0.0 661
MsG0180003420.01.T01 AT2G35650 68.623 443 136 2 41 483 1 440 0.0 661
MsG0180003420.01.T01 AT5G16190 68.807 436 136 0 19 454 6 441 0.0 660
MsG0180003420.01.T01 AT5G16190 61.446 498 158 2 19 483 6 502 0.0 648
MsG0180003420.01.T01 AT3G56000 64.465 439 151 4 17 450 20 458 0.0 612
MsG0180003420.01.T01 AT5G16190 67.482 409 132 1 75 483 1 408 0.0 604
MsG0180003420.01.T01 AT4G16590 57.292 480 170 2 13 492 50 494 0.0 593
MsG0180003420.01.T01 AT1G23480 72.365 351 97 0 133 483 21 371 0.0 550
MsG0180003420.01.T01 AT4G13410 63.488 367 126 2 2 367 26 385 0.0 523
MsG0180003420.01.T01 AT2G35650 68.169 355 109 3 130 483 3 354 0.0 522
MsG0180003420.01.T01 AT4G13410 69.085 317 98 0 138 454 1 317 2.29e-178 505
MsG0180003420.01.T01 AT1G24070 64.738 363 121 3 9 367 43 402 2.69e-177 504
MsG0180003420.01.T01 AT4G31590 48.956 431 216 3 19 448 160 587 4.04e-146 434
MsG0180003420.01.T01 AT3G28180 48.724 431 215 4 18 448 135 559 1.70e-143 427
MsG0180003420.01.T01 AT2G24630 47.806 433 218 3 19 448 160 587 1.77e-142 425
MsG0180003420.01.T01 AT2G24630 47.806 433 218 3 19 448 160 587 1.77e-142 425
MsG0180003420.01.T01 AT3G07330 46.065 432 228 3 19 448 153 581 1.91e-136 409
MsG0180003420.01.T01 AT3G07330 46.065 432 228 3 19 448 153 581 1.91e-136 409
MsG0180003420.01.T01 AT4G07960 45.714 455 229 5 13 453 156 606 1.44e-131 397
MsG0180003420.01.T01 AT4G07960 45.714 455 229 5 13 453 156 606 1.44e-131 397

Find 117 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTGTCTTTCTCATTTC+TGG -0.000894 1:-62096364 MsG0180003420.01.T01:five_prime_UTR
CACTTCATTTACTTGTCTTT+TGG 0.164379 1:-62092156 MsG0180003420.01.T01:CDS
AACCAGAGAAACGTTATAAA+TGG 0.223025 1:-62096118 MsG0180003420.01.T01:CDS
GAGTTCCAACAGCATTTAAA+AGG 0.227638 1:+62092747 None:intergenic
CTTCTTGTTCAACTGTAAAA+TGG 0.241342 1:+62093672 None:intergenic
TCTTCCTCTTACGCCTTCTT+TGG 0.280026 1:-62093644 MsG0180003420.01.T01:CDS
CTGAGGTTGTGGTCCCTAAA+TGG 0.284935 1:-62092799 MsG0180003420.01.T01:CDS
CGAACAAAGGCAACAATTAT+TGG 0.291989 1:-62092103 MsG0180003420.01.T01:CDS
GTTTACAGCTTGAGTTTGTT+TGG 0.299629 1:-62096277 MsG0180003420.01.T01:CDS
TTCAACTGATCCAACAATTA+AGG 0.316021 1:-62095830 MsG0180003420.01.T01:intron
TTTATACCTCTCCAATTTGC+AGG 0.325609 1:-62093296 MsG0180003420.01.T01:intron
GAAAATGCAAAGCAGGTAAA+TGG 0.326310 1:+62096588 None:intergenic
TGAGGTTGTGGTCCCTAAAT+GGG 0.330901 1:-62092798 MsG0180003420.01.T01:CDS
AGAAAATGGAACCTGCAAAT+TGG 0.339704 1:+62093285 None:intergenic
GGCATAGATACCTTAATTGT+TGG 0.355728 1:+62095820 None:intergenic
GTTCAAGCTCGCTGGAAGTT+TGG 0.359127 1:-62095346 MsG0180003420.01.T01:intron
TGAACATAAAGTATGAAGTT+AGG 0.363190 1:-62095534 MsG0180003420.01.T01:CDS
ACCAACTTTGTTTAGAGAAA+AGG 0.373477 1:+62096420 None:intergenic
TTATAAATGGGAGACTATTA+AGG 0.376031 1:-62096105 MsG0180003420.01.T01:CDS
CGCCAAAGAAAATCAGGTTC+TGG 0.385205 1:+62095409 None:intergenic
CTTGTTAATAATCCTGATAT+TGG 0.385746 1:-62095373 MsG0180003420.01.T01:CDS
CACCTTTGCTTCTCCATCTA+CGG 0.394457 1:+62095557 None:intergenic
CAGGTTTATCAGTTATCAAT+TGG 0.395004 1:-62095910 MsG0180003420.01.T01:CDS
CACCGTTGAAGACATGGATT+TGG 0.395380 1:-62093350 MsG0180003420.01.T01:CDS
TACGCCTTCTTTGGCTTCAA+TGG 0.400112 1:-62093635 MsG0180003420.01.T01:intron
TTGAAGATCTAAGCATGTTA+TGG 0.412929 1:+62096525 None:intergenic
TCTATGTTGTTGGTACCTAT+AGG 0.413453 1:+62093096 None:intergenic
TCCCATTTATAACGTTTCTC+TGG 0.416994 1:+62096116 None:intergenic
TACAAGTAGAATGCCGTAGA+TGG 0.422350 1:-62095570 MsG0180003420.01.T01:CDS
CAAGTACTTTAAAAGCCTAT+AGG 0.423182 1:-62093111 MsG0180003420.01.T01:CDS
ATTAAGGATGATGTTGAGTT+GGG 0.429632 1:-62096089 MsG0180003420.01.T01:CDS
AAAACTTGGAGATGCTTTCA+AGG 0.431283 1:-62092038 MsG0180003420.01.T01:CDS
TCAGGTACCATAACAGTTGC+AGG 0.443279 1:+62092818 None:intergenic
ACACAGGGACTGCGGGTGTA+TGG 0.443842 1:-62093417 MsG0180003420.01.T01:intron
CAAGGAGCGAGGAATGGACT+TGG 0.444792 1:-62096299 MsG0180003420.01.T01:CDS
GCTTGAACAAGACCAATATC+AGG 0.448353 1:+62095361 None:intergenic
AGCATTTAAAAGGGTGATGA+TGG 0.449189 1:+62092757 None:intergenic
TGCGGGTGTATGGAGAATTT+CGG 0.459704 1:-62093407 MsG0180003420.01.T01:CDS
CTCAGCAATGGTACGATCAA+TGG 0.460806 1:+62096239 None:intergenic
ATGGTTCGCCAAAGAAAATC+AGG 0.460998 1:+62095403 None:intergenic
GAAGTTAGGGACAATAGAAA+TGG 0.465563 1:-62095520 MsG0180003420.01.T01:CDS
TTGGTCTTGTTCAAGCTCGC+TGG 0.467480 1:-62095354 MsG0180003420.01.T01:CDS
GAGGTTGTGGTCCCTAAATG+GGG 0.471099 1:-62092797 MsG0180003420.01.T01:CDS
ACCAGAGAAACGTTATAAAT+GGG 0.471627 1:-62096117 MsG0180003420.01.T01:CDS
TATTAAGGATGATGTTGAGT+TGG 0.472942 1:-62096090 MsG0180003420.01.T01:CDS
ACCTCTCTTTCATTATACAT+TGG 0.479636 1:+62096032 None:intergenic
GACTCAGTTGGCCTTCTGAT+AGG 0.480295 1:-62095876 MsG0180003420.01.T01:CDS
TCAGGATTATTAACAAGGAA+AGG 0.482430 1:+62095379 None:intergenic
GAACATAAAGTATGAAGTTA+GGG 0.483548 1:-62095533 MsG0180003420.01.T01:CDS
GAAGCCAAAGAAGGCGTAAG+AGG 0.484790 1:+62093640 None:intergenic
TGTGTTACCTGCAACTGTTA+TGG 0.486478 1:-62092825 MsG0180003420.01.T01:CDS
AAGGGTAAAGCTAGTGGTAA+AGG 0.489584 1:-62092019 MsG0180003420.01.T01:CDS
AAATTTCCATCCTTTGAGAC+TGG 0.493376 1:+62093318 None:intergenic
TTTACCATTGAAGCCAAAGA+AGG 0.495858 1:+62093631 None:intergenic
CATTGCAGAAAGTGTCTTTG+TGG 0.498896 1:-62092928 MsG0180003420.01.T01:intron
GAACAATGAAAATGCAAAGC+AGG 0.509723 1:+62096581 None:intergenic
CACATGACCATCTATGTTGT+TGG 0.511522 1:+62093086 None:intergenic
GGGAAACTCTAATTACCCTA+TGG 0.513447 1:-62096069 MsG0180003420.01.T01:CDS
CAGGATTATTAACAAGGAAA+GGG 0.514946 1:+62095380 None:intergenic
AGACTAGTAGAGTGAATGAA+TGG 0.515266 1:-62092072 MsG0180003420.01.T01:CDS
TTCGATTTAGGATTGGAGAC+AGG 0.515430 1:-62091985 MsG0180003420.01.T01:intron
CAGAAAAGAAACTGTGGAAG+AGG 0.516768 1:+62096474 None:intergenic
ATTTCGGCGTTGAATGAAGC+TGG 0.519277 1:-62093391 MsG0180003420.01.T01:CDS
GTTGCAGTGTTTCTTTGCCT+AGG 0.519340 1:-62096215 MsG0180003420.01.T01:CDS
TTACAAAGCAGGTGCACTAA+AGG 0.520331 1:-62095497 MsG0180003420.01.T01:CDS
CATTTAGGGACCACAACCTC+AGG 0.523346 1:+62092800 None:intergenic
TTTAAAAGGGTGATGATGGA+AGG 0.524608 1:+62092761 None:intergenic
AATAGAAATGGTTACAAAGC+AGG 0.526909 1:-62095508 MsG0180003420.01.T01:CDS
ATAGGTACCAACAACATAGA+TGG 0.528325 1:-62093093 MsG0180003420.01.T01:CDS
GGAACTTGAACAAGAACCAT+AGG 0.529284 1:+62096053 None:intergenic
TGTTATGGTACCTGAGGTTG+TGG 0.535205 1:-62092810 MsG0180003420.01.T01:CDS
GCAAAATATTTAACGCAACA+TGG 0.538750 1:+62091101 None:intergenic
GTGCTGCATGTGGACTCAGT+TGG 0.542149 1:-62095888 MsG0180003420.01.T01:CDS
AGGTTGTGGTCCCTAAATGG+GGG 0.547705 1:-62092796 MsG0180003420.01.T01:CDS
ATGCAAAGCAGGTAAATGGT+TGG 0.548300 1:+62096592 None:intergenic
TTTCTTTGTTCGGAAGATTG+TGG 0.548523 1:-62092879 MsG0180003420.01.T01:CDS
AGTTCCAACAGCATTTAAAA+GGG 0.548858 1:+62092748 None:intergenic
CAAAGCAGGTGCACTAAAGG+AGG 0.549466 1:-62095494 MsG0180003420.01.T01:CDS
GTTGGTTGAGAGAGTTTACA+TGG 0.549566 1:-62096177 MsG0180003420.01.T01:CDS
AGGCATGTCGTTGATGATGT+TGG 0.556862 1:-62096195 MsG0180003420.01.T01:CDS
GCTGTACGTGCCAGTCTCAA+AGG 0.561858 1:-62093328 MsG0180003420.01.T01:CDS
CAATATCAGGATTATTAACA+AGG 0.562297 1:+62095374 None:intergenic
ACATCATCAACGACATGCCT+AGG 0.566493 1:+62096198 None:intergenic
TAGAACCACCGTTGAAGACA+TGG 0.566782 1:-62093356 MsG0180003420.01.T01:CDS
TTTACAGTTGAACAAGAAGT+GGG 0.567042 1:-62093668 MsG0180003420.01.T01:CDS
CGTTGAATGAAGCTGGTGGA+TGG 0.568883 1:-62093384 MsG0180003420.01.T01:CDS
AGAAAACAAATGTGTTGATG+TGG 0.571210 1:+62092855 None:intergenic
CTTTGTTCGATGTAGAGACA+TGG 0.571312 1:+62092117 None:intergenic
TGCCGTAGATGGAGAAGCAA+AGG 0.578627 1:-62095559 MsG0180003420.01.T01:CDS
ATTATTAACAAGGAAAGGGA+TGG 0.580098 1:+62095384 None:intergenic
AAACTTGGAGATGCTTTCAA+GGG 0.583798 1:-62092037 MsG0180003420.01.T01:CDS
GTGCATGACACAGGGACTGC+GGG 0.585429 1:-62093424 MsG0180003420.01.T01:intron
CAAATCCATGTCTTCAACGG+TGG 0.589928 1:+62093351 None:intergenic
TACGTGCCAGTCTCAAAGGA+TGG 0.590155 1:-62093324 MsG0180003420.01.T01:CDS
TTATCAATTGGTGCTGCATG+TGG 0.591381 1:-62095898 MsG0180003420.01.T01:CDS
TCCAATGTATAATGAAAGAG+AGG 0.595576 1:-62096033 MsG0180003420.01.T01:intron
TTAAAAGGGTGATGATGGAA+GGG 0.598070 1:+62092762 None:intergenic
CGGATGAATGTTTAATGACA+AGG 0.602777 1:-62093718 MsG0180003420.01.T01:CDS
GAGAAAGACAATGACCCACT+TGG 0.605620 1:+62096372 None:intergenic
AGCCAAATCCATGTCTTCAA+CGG 0.615167 1:+62093348 None:intergenic
TAAATGCTGTTGGAACTCCA+AGG 0.615764 1:-62092742 MsG0180003420.01.T01:intron
AACACTGCAACTCTCAGCAA+TGG 0.618489 1:+62096227 None:intergenic
GAACTTGAACAAGAACCATA+GGG 0.618606 1:+62096054 None:intergenic
GAAAACAAATGTGTTGATGT+GGG 0.631833 1:+62092856 None:intergenic
ATGGAACCTGCAAATTGGAG+AGG 0.632115 1:+62093290 None:intergenic
GCTTTCAAGGGTAAAGCTAG+TGG 0.636099 1:-62092025 MsG0180003420.01.T01:CDS
AAAGCAGGTGCACTAAAGGA+GGG 0.642758 1:-62095493 MsG0180003420.01.T01:CDS
TGTATGATGATCCTATCAGA+AGG 0.646811 1:+62095865 None:intergenic
TTGGTTGAGAGAGTTTACAT+GGG 0.648583 1:-62096176 MsG0180003420.01.T01:CDS
TGCAACTGTTATGGTACCTG+AGG 0.657838 1:-62092816 MsG0180003420.01.T01:CDS
CATGTCTCTACATCGAACAA+AGG 0.661355 1:-62092116 MsG0180003420.01.T01:CDS
GTCATGCAGAAAAGAAACTG+TGG 0.663384 1:+62096468 None:intergenic
GGTTGTGGTCCCTAAATGGG+GGG 0.670300 1:-62092795 MsG0180003420.01.T01:CDS
CAACAACATAGATGGTCATG+TGG 0.672626 1:-62093085 MsG0180003420.01.T01:CDS
TATGGAGATTATCACGAACA+AGG 0.676156 1:-62093035 MsG0180003420.01.T01:intron
TCGGCGTTGAATGAAGCTGG+TGG 0.678886 1:-62093388 MsG0180003420.01.T01:CDS
TGTGCATGACACAGGGACTG+CGG 0.711800 1:-62093425 MsG0180003420.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATTTATTGCTTAA+TGG - Chr1:62095347-62095366 MsG0180003420.01.T01:CDS 10.0%
!! TATATAAAAGTCATAATTAA+TGG + Chr1:62094354-62094373 None:intergenic 10.0%
!!! AATCTAAAATGTTTTATAAT+TGG + Chr1:62092860-62092879 None:intergenic 10.0%
!!! AGTATTTTTATATTTAACTT+TGG + Chr1:62093084-62093103 None:intergenic 10.0%
!! AATTGGTTAGAATTTATATA+AGG - Chr1:62095473-62095492 MsG0180003420.01.T01:CDS 15.0%
!! TAAACAATTCTATTTACATA+AGG + Chr1:62095189-62095208 None:intergenic 15.0%
!! TAGTATTAAATATAAGCAAA+AGG + Chr1:62095918-62095937 None:intergenic 15.0%
!! TTATACAAATACATGAATTT+AGG + Chr1:62094850-62094869 None:intergenic 15.0%
!! TTTAAATAACATATCTTTGA+TGG - Chr1:62093443-62093462 MsG0180003420.01.T01:intron 15.0%
!!! AAATATACTCTCTTTAATTT+TGG + Chr1:62092666-62092685 None:intergenic 15.0%
!!! AATATACTCTCTTTAATTTT+GGG + Chr1:62092665-62092684 None:intergenic 15.0%
!!! ATAAAACATTTTAGATTTTG+AGG - Chr1:62092863-62092882 MsG0180003420.01.T01:CDS 15.0%
!!! GTAATTTTTTTCATCTATTT+TGG + Chr1:62096337-62096356 None:intergenic 15.0%
!! AAGAAAACCATATGTTAAAA+TGG + Chr1:62094631-62094650 None:intergenic 20.0%
!! AATAGAATTGTTTATCTCTT+AGG - Chr1:62095195-62095214 MsG0180003420.01.T01:intron 20.0%
!! AATTATATGAATATTATGGC+AGG - Chr1:62096663-62096682 MsG0180003420.01.T01:five_prime_UTR 20.0%
!! AATTATTAATAGCAAGTCAA+AGG - Chr1:62092129-62092148 MsG0180003420.01.T01:CDS 20.0%
!! AGTAGATGATAAAACAATAA+TGG - Chr1:62093598-62093617 MsG0180003420.01.T01:intron 20.0%
!! ATAGAATTGTTTATCTCTTA+GGG - Chr1:62095196-62095215 MsG0180003420.01.T01:intron 20.0%
!! ATTATATGAATATTATGGCA+GGG - Chr1:62096664-62096683 MsG0180003420.01.T01:five_prime_UTR 20.0%
!! CTTATATTGTAAGGTTAAAT+TGG - Chr1:62095456-62095475 MsG0180003420.01.T01:CDS 20.0%
!! GTTCACAAATTACATTAAAA+TGG + Chr1:62091820-62091839 None:intergenic 20.0%
!! TACTATATATACATGTCTAA+AGG + Chr1:62095305-62095324 None:intergenic 20.0%
!! TATTTATTGCTTAATGGTTA+AGG - Chr1:62095353-62095372 MsG0180003420.01.T01:CDS 20.0%
!! TGAGTTAAAAAAATATACCT+TGG + Chr1:62095082-62095101 None:intergenic 20.0%
!! TGATAAAACAATAATGGTAT+AGG - Chr1:62093604-62093623 MsG0180003420.01.T01:intron 20.0%
!! TGATATATGAAACTTGTAAT+TGG + Chr1:62093275-62093294 None:intergenic 20.0%
!! TTAACCTTACAATATAAGTA+AGG + Chr1:62095454-62095473 None:intergenic 20.0%
!! TTGAGATTGAATTAAGAAAA+TGG + Chr1:62094536-62094555 None:intergenic 20.0%
!! TTTATTGTAATCAAACTCTA+TGG + Chr1:62095614-62095633 None:intergenic 20.0%
!!! AAAAACTTGTTTTTGTTTCA+AGG + Chr1:62091362-62091381 None:intergenic 20.0%
!!! AAAACTTGTTTTTGTTTCAA+GGG + Chr1:62091361-62091380 None:intergenic 20.0%
!!! AACGTTTCAAGTAAAAAAAA+TGG - Chr1:62091474-62091493 MsG0180003420.01.T01:intron 20.0%
!!! AGATTTACAAAGTTTCATTT+TGG - Chr1:62096507-62096526 MsG0180003420.01.T01:five_prime_UTR 20.0%
!!! ATATACTCTCTTTAATTTTG+GGG + Chr1:62092664-62092683 None:intergenic 20.0%
!!! ATATGTTATTTAAAGTGTGT+CGG + Chr1:62093437-62093456 None:intergenic 20.0%
!!! CATGTGCAATTTTAATTTAA+TGG - Chr1:62093868-62093887 MsG0180003420.01.T01:intron 20.0%
!!! CTTTGAAATTGACATATAAA+TGG - Chr1:62091862-62091881 MsG0180003420.01.T01:intron 20.0%
!!! TTAGTTTTCTCTTTATCTAA+AGG - Chr1:62093297-62093316 MsG0180003420.01.T01:CDS 20.0%
!!! TTTACAGTTTTTTCTTTGTT+CGG - Chr1:62094915-62094934 MsG0180003420.01.T01:intron 20.0%
!!! TTTGACTTGAAGTTAAAATT+TGG - Chr1:62092757-62092776 MsG0180003420.01.T01:CDS 20.0%
! AAAATTACAAACCAATTGTG+AGG + Chr1:62092793-62092812 None:intergenic 25.0%
! AAACAACAAAATCAAACTGT+CGG - Chr1:62093489-62093508 MsG0180003420.01.T01:intron 25.0%
! AAACTGTTTATTACTAGCAT+CGG + Chr1:62095540-62095559 None:intergenic 25.0%
! AACTTGACTAATGTATTGAA+GGG + Chr1:62094810-62094829 None:intergenic 25.0%
! AATAACATATCTTTGATGGA+AGG - Chr1:62093447-62093466 MsG0180003420.01.T01:intron 25.0%
! ACAAACAAACACAACAAAAT+AGG + Chr1:62095999-62096018 None:intergenic 25.0%
! AGGGTTAAGTTTGTATTAAA+AGG - Chr1:62092161-62092180 MsG0180003420.01.T01:CDS 25.0%
! ATAAACAGTTACTGGAAAAT+AGG + Chr1:62093899-62093918 None:intergenic 25.0%
! ATAATTAATGGTTTCTGCTA+CGG + Chr1:62094342-62094361 None:intergenic 25.0%
! ATAGATACATAAACAGTTAC+TGG + Chr1:62093907-62093926 None:intergenic 25.0%
! ATATAAATGGTTCAAAATGC+AGG - Chr1:62091875-62091894 MsG0180003420.01.T01:intron 25.0%
! ATATGAAACTTGTAATTGGT+TGG + Chr1:62093271-62093290 None:intergenic 25.0%
! ATCACAAATTAGAAGGAAAA+TGG + Chr1:62094240-62094259 None:intergenic 25.0%
! ATTTACATTGTATTTGCTTG+AGG - Chr1:62096459-62096478 MsG0180003420.01.T01:five_prime_UTR 25.0%
! CAAGCAAATACAATGTAAAT+AGG + Chr1:62096459-62096478 None:intergenic 25.0%
! CAATATCAGGATTATTAACA+AGG + Chr1:62092433-62092452 None:intergenic 25.0%
! CTTGTTAATAATCCTGATAT+TGG - Chr1:62092431-62092450 MsG0180003420.01.T01:intron 25.0%
! GAAATAAGTTGCTTCAATAA+TGG - Chr1:62096481-62096500 MsG0180003420.01.T01:five_prime_UTR 25.0%
! GAACATAAAGTATGAAGTTA+GGG - Chr1:62092271-62092290 MsG0180003420.01.T01:intron 25.0%
! GAATACTAAGACTTCATTTA+TGG - Chr1:62093635-62093654 MsG0180003420.01.T01:intron 25.0%
! GACTATAATCACAAATTAGA+AGG + Chr1:62094247-62094266 None:intergenic 25.0%
! GATGCAATTTAATTGCTAAA+TGG + Chr1:62093999-62094018 None:intergenic 25.0%
! GTAGTTGGAAATTCATTTAA+AGG + Chr1:62093741-62093760 None:intergenic 25.0%
! TAAAAAGCTTGAATTAGAGA+CGG + Chr1:62092097-62092116 None:intergenic 25.0%
! TAAACAGTTACTGGAAAATA+GGG + Chr1:62093898-62093917 None:intergenic 25.0%
! TAAATGAATTTCCAACTACT+AGG - Chr1:62093742-62093761 MsG0180003420.01.T01:intron 25.0%
! TAAATGGTTGGAAAAATGAA+AGG + Chr1:62091203-62091222 None:intergenic 25.0%
! TAACTTGACTAATGTATTGA+AGG + Chr1:62094811-62094830 None:intergenic 25.0%
! TACATAAGGTTACATAAATG+TGG + Chr1:62095175-62095194 None:intergenic 25.0%
! TATATACATGTCTAAAGGTT+AGG + Chr1:62095300-62095319 None:intergenic 25.0%
! TATTAACTTCAGTACATGTT+TGG - Chr1:62092554-62092573 MsG0180003420.01.T01:intron 25.0%
! TCTTCCTTACTTATATTGTA+AGG - Chr1:62095447-62095466 MsG0180003420.01.T01:CDS 25.0%
! TCTTGATATATGATGTGAAT+TGG - Chr1:62094647-62094666 MsG0180003420.01.T01:intron 25.0%
! TGAACATAAAGTATGAAGTT+AGG - Chr1:62092270-62092289 MsG0180003420.01.T01:intron 25.0%
! TGTGATTATAGTCATAGTTA+TGG - Chr1:62094254-62094273 MsG0180003420.01.T01:intron 25.0%
! TGTGTTAATTTAATGTGTGT+TGG + Chr1:62093213-62093232 None:intergenic 25.0%
! TTAATGTGTGTTGGAAAATA+TGG + Chr1:62093204-62093223 None:intergenic 25.0%
! TTACAATGAACCATTAGATA+TGG + Chr1:62095133-62095152 None:intergenic 25.0%
! TTATAAATGGGAGACTATTA+AGG - Chr1:62091699-62091718 MsG0180003420.01.T01:intron 25.0%
! TTCAATGTGTTTCCTAATTA+AGG + Chr1:62093812-62093831 None:intergenic 25.0%
! TTTGTTTGTGTTCAATCATT+AGG - Chr1:62096010-62096029 MsG0180003420.01.T01:intron 25.0%
!! AAAAAAATGGATGCTTTTCA+AGG - Chr1:62091487-62091506 MsG0180003420.01.T01:intron 25.0%
!! AAGTTAATGTGATTCTAAGA+AGG + Chr1:62092501-62092520 None:intergenic 25.0%
!! ATTTCTTTTGTGAAGTTGTT+TGG - Chr1:62091658-62091677 MsG0180003420.01.T01:intron 25.0%
!! CTTGACAAAAGTGTAATTTA+AGG + Chr1:62092035-62092054 None:intergenic 25.0%
!! GGTTTATCATTATACTGATT+AGG + Chr1:62093978-62093997 None:intergenic 25.0%
!! TCTTTTCAGAAAAATGGTTA+TGG - Chr1:62094751-62094770 MsG0180003420.01.T01:intron 25.0%
!! TTTTCATCATCACCTTAATT+AGG - Chr1:62093797-62093816 MsG0180003420.01.T01:intron 25.0%
!! TTTTTGTAAGAGCTATTATG+TGG + Chr1:62091122-62091141 None:intergenic 25.0%
!!! AACCATTTTTCTGAAAAGAT+TGG + Chr1:62094750-62094769 None:intergenic 25.0%
!!! ATTGGTTCCATTTTAACATA+TGG - Chr1:62094621-62094640 MsG0180003420.01.T01:intron 25.0%
!!! CTCTCTTTTCTTTTTCATTA+AGG - Chr1:62091254-62091273 MsG0180003420.01.T01:intron 25.0%
!!! GATTTTTTTTACCTCACAAT+TGG - Chr1:62092779-62092798 MsG0180003420.01.T01:CDS 25.0%
!!! GTGCAATTTTAATTTAATGG+TGG - Chr1:62093871-62093890 MsG0180003420.01.T01:intron 25.0%
!!! TCTCATTGATTTAAAAAGCA+GGG - Chr1:62095270-62095289 MsG0180003420.01.T01:intron 25.0%
!!! TGATTTTAGAGATGTAGAAT+TGG - Chr1:62092714-62092733 MsG0180003420.01.T01:intron 25.0%
!!! TTACAATAAACTTGTTTTGC+AGG - Chr1:62095624-62095643 MsG0180003420.01.T01:intron 25.0%
!!! TTTGAAGCTTCTTTTAATCA+CGG - Chr1:62092994-62093013 MsG0180003420.01.T01:intron 25.0%
AAACAAATGTGGCTAATATG+CGG - Chr1:62094316-62094335 MsG0180003420.01.T01:intron 30.0%
AACCAGAGAAACGTTATAAA+TGG - Chr1:62091686-62091705 MsG0180003420.01.T01:intron 30.0%
AAGAAGAATATGAAGCTTCA+AGG + Chr1:62095413-62095432 None:intergenic 30.0%
AAGTCAAAGGACTAATGATA+GGG - Chr1:62092142-62092161 MsG0180003420.01.T01:CDS 30.0%
AATAGAAATGGTTACAAAGC+AGG - Chr1:62092296-62092315 MsG0180003420.01.T01:intron 30.0%
ACCAGAGAAACGTTATAAAT+GGG - Chr1:62091687-62091706 MsG0180003420.01.T01:intron 30.0%
ACCTCTCTTTCATTATACAT+TGG + Chr1:62091775-62091794 None:intergenic 30.0%
AGAATGTTAGAGTTTAGTTG+TGG - Chr1:62093530-62093549 MsG0180003420.01.T01:intron 30.0%
AGTGAACAAACAAAAAATGC+AGG - Chr1:62092205-62092224 MsG0180003420.01.T01:intron 30.0%
ATAAATTATGTGCATGACAC+AGG - Chr1:62094371-62094390 MsG0180003420.01.T01:intron 30.0%
ATCAAATGTTGTTGTGACTA+CGG + Chr1:62096379-62096398 None:intergenic 30.0%
ATGCAAATGCTTGTATGTAT+AGG + Chr1:62096125-62096144 None:intergenic 30.0%
ATTAAGGATGATGTTGAGTT+GGG - Chr1:62091715-62091734 MsG0180003420.01.T01:intron 30.0%
ATTATTAACAAGGAAAGGGA+TGG + Chr1:62092423-62092442 None:intergenic 30.0%
ATTGGAGACAGGTATAAAAT+TGG - Chr1:62095830-62095849 MsG0180003420.01.T01:intron 30.0%
CACACGTTAATATTTGCTTT+AGG - Chr1:62095497-62095516 MsG0180003420.01.T01:CDS 30.0%
CAGGATTATTAACAAGGAAA+GGG + Chr1:62092427-62092446 None:intergenic 30.0%
CAGGTTTATCAGTTATCAAT+TGG - Chr1:62091894-62091913 MsG0180003420.01.T01:intron 30.0%
CTTCTTGTTCAACTGTAAAA+TGG + Chr1:62094135-62094154 None:intergenic 30.0%
GAATTCACAAAAATCGAAAC+TGG + Chr1:62096228-62096247 None:intergenic 30.0%
GAATTGATAAATCAACTGCT+TGG + Chr1:62092939-62092958 None:intergenic 30.0%
GCAAAATATTTAACGCAACA+TGG + Chr1:62096706-62096725 None:intergenic 30.0%
TAAATTATGTGCATGACACA+GGG - Chr1:62094372-62094391 MsG0180003420.01.T01:intron 30.0%
TACGATAATGCAAACAAATG+TGG - Chr1:62094305-62094324 MsG0180003420.01.T01:intron 30.0%
TAGTCACAACAACATTTGAT+TGG - Chr1:62096379-62096398 MsG0180003420.01.T01:five_prime_UTR 30.0%
TATTAAGGATGATGTTGAGT+TGG - Chr1:62091714-62091733 MsG0180003420.01.T01:intron 30.0%
TCAGGATTATTAACAAGGAA+AGG + Chr1:62092428-62092447 None:intergenic 30.0%
TCCAATGTATAATGAAAGAG+AGG - Chr1:62091771-62091790 MsG0180003420.01.T01:intron 30.0%
TGCTTATATATAGAGACAGA+GGG - Chr1:62093149-62093168 MsG0180003420.01.T01:intron 30.0%
TGTTATGGATGTTGCATTAA+TGG - Chr1:62096735-62096754 MsG0180003420.01.T01:five_prime_UTR 30.0%
TTCAACTGATCCAACAATTA+AGG - Chr1:62091974-62091993 MsG0180003420.01.T01:intron 30.0%
TTGAAGATCTAAGCATGTTA+TGG + Chr1:62091282-62091301 None:intergenic 30.0%
TTTACAGTTGAACAAGAAGT+GGG - Chr1:62094136-62094155 MsG0180003420.01.T01:intron 30.0%
! AAAAAGCTTCGATTTAGGAT+TGG - Chr1:62095812-62095831 MsG0180003420.01.T01:intron 30.0%
! AAGTACATTTTCAACCAAGT+GGG - Chr1:62091418-62091437 MsG0180003420.01.T01:intron 30.0%
! ACCAACTTTGTTTAGAGAAA+AGG + Chr1:62091387-62091406 None:intergenic 30.0%
! AGAAAACAAATGTGTTGATG+TGG + Chr1:62094952-62094971 None:intergenic 30.0%
! AGCCAATCTTTTCAGAAAAA+TGG - Chr1:62094745-62094764 MsG0180003420.01.T01:intron 30.0%
! ATTCTAAGAAGGAGAAGAAA+AGG + Chr1:62092490-62092509 None:intergenic 30.0%
! CAAGTACTTTAAAAGCCTAT+AGG - Chr1:62094693-62094712 MsG0180003420.01.T01:intron 30.0%
! CACTTCATTTACTTGTCTTT+TGG - Chr1:62095648-62095667 MsG0180003420.01.T01:intron 30.0%
! CAGTTGATTTATCAATTCAG+CGG - Chr1:62092941-62092960 MsG0180003420.01.T01:intron 30.0%
! CTTCTTCTCACATTGAATTT+TGG + Chr1:62094588-62094607 None:intergenic 30.0%
! GAAAACAAATGTGTTGATGT+GGG + Chr1:62094951-62094970 None:intergenic 30.0%
! TATAAGCACCCTTTTATTAG+AGG + Chr1:62093137-62093156 None:intergenic 30.0%
! TATGATGTGAATTGGTCTAT+AGG - Chr1:62094655-62094674 MsG0180003420.01.T01:intron 30.0%
! TCCTTTTCTCTAAACAAAGT+TGG - Chr1:62091383-62091402 MsG0180003420.01.T01:intron 30.0%
! TTTTACAGTTGAACAAGAAG+TGG - Chr1:62094135-62094154 MsG0180003420.01.T01:intron 30.0%
! TTTTGCAATTTCAGCTGTTA+TGG - Chr1:62096720-62096739 MsG0180003420.01.T01:five_prime_UTR 30.0%
!! AGAAGAGTGTTACATTACAT+TGG - Chr1:62094603-62094622 MsG0180003420.01.T01:intron 30.0%
!! ATTTTTCTGAAAAGATTGGC+TGG + Chr1:62094746-62094765 None:intergenic 30.0%
!! CTGATTAGGAATTGTTTTAC+AGG + Chr1:62093964-62093983 None:intergenic 30.0%
!! GTCTCATTGATTTAAAAAGC+AGG - Chr1:62095269-62095288 MsG0180003420.01.T01:intron 30.0%
!!! AAAAGTGCACATTAGTTTTG+TGG + Chr1:62092008-62092027 None:intergenic 30.0%
!!! CTATAGGCTTTTAAAGTACT+TGG + Chr1:62094695-62094714 None:intergenic 30.0%
AAAACTTGGAGATGCTTTCA+AGG - Chr1:62095766-62095785 MsG0180003420.01.T01:intron 35.0%
AAACAAAGATCTAACGCAAG+TGG + Chr1:62096611-62096630 None:intergenic 35.0%
AAACTTGGAGATGCTTTCAA+GGG - Chr1:62095767-62095786 MsG0180003420.01.T01:intron 35.0%
AACAAAATCAAACTGTCGGT+AGG - Chr1:62093493-62093512 MsG0180003420.01.T01:intron 35.0%
AATTAAATTGCATCGCAGCA+AGG - Chr1:62094005-62094024 MsG0180003420.01.T01:intron 35.0%
ACCCTTTGCCTCTAATAAAA+GGG - Chr1:62093126-62093145 MsG0180003420.01.T01:CDS 35.0%
ACTTCAGTACATGTTTGGAA+TGG - Chr1:62092559-62092578 MsG0180003420.01.T01:intron 35.0%
AGAAAATGGAACCTGCAAAT+TGG + Chr1:62094522-62094541 None:intergenic 35.0%
AGACTAGTAGAGTGAATGAA+TGG - Chr1:62095732-62095751 MsG0180003420.01.T01:intron 35.0%
AGATTATCACGAACAAGGTA+AGG - Chr1:62094774-62094793 MsG0180003420.01.T01:intron 35.0%
AGCATTTAAAAGGGTGATGA+TGG + Chr1:62095050-62095069 None:intergenic 35.0%
AGCATTTGCATTCTTCATCA+TGG - Chr1:62096134-62096153 MsG0180003420.01.T01:CDS 35.0%
AGGGCTCCTTTATAAAATGT+AGG + Chr1:62093349-62093368 None:intergenic 35.0%
AGTATCATAGATGCTAACGT+TGG - Chr1:62092053-62092072 MsG0180003420.01.T01:CDS 35.0%
ATAGGTACCAACAACATAGA+TGG - Chr1:62094711-62094730 MsG0180003420.01.T01:intron 35.0%
ATCATGGCATTTGGATATGT+TGG - Chr1:62096150-62096169 MsG0180003420.01.T01:CDS 35.0%
CAAACAAAAAATGCAGGAGT+TGG - Chr1:62092211-62092230 MsG0180003420.01.T01:intron 35.0%
CAAGTCAAAGGACTAATGAT+AGG - Chr1:62092141-62092160 MsG0180003420.01.T01:CDS 35.0%
CACATGTTAGAACTTCTTGT+TGG - Chr1:62096036-62096055 MsG0180003420.01.T01:CDS 35.0%
CATGCGATGAGATTAGATTA+GGG + Chr1:62094201-62094220 None:intergenic 35.0%
CCGCATTCACTAAAAACAAA+GGG + Chr1:62094069-62094088 None:intergenic 35.0%
CGAACAAAGGCAACAATTAT+TGG - Chr1:62095701-62095720 MsG0180003420.01.T01:intron 35.0%
CGGATGAATGTTTAATGACA+AGG - Chr1:62094086-62094105 MsG0180003420.01.T01:intron 35.0%
CTGATTCCTACTCATCAAAA+AGG + Chr1:62096550-62096569 None:intergenic 35.0%
CTTTAGGCCTACAAATATGT+CGG - Chr1:62095513-62095532 MsG0180003420.01.T01:CDS 35.0%
GAAAATGCAAAGCAGGTAAA+TGG + Chr1:62091219-62091238 None:intergenic 35.0%
GAACAATGAAAATGCAAAGC+AGG + Chr1:62091226-62091245 None:intergenic 35.0%
GAACCATTAGATATGGTCTA+AGG + Chr1:62095126-62095145 None:intergenic 35.0%
GAACTTGAACAAGAACCATA+GGG + Chr1:62091753-62091772 None:intergenic 35.0%
GAAGTTAGGGACAATAGAAA+TGG - Chr1:62092284-62092303 MsG0180003420.01.T01:intron 35.0%
GACTCAAAAAGCTTCGATTT+AGG - Chr1:62095807-62095826 MsG0180003420.01.T01:intron 35.0%
GCTGCTATGATCTTATGTAT+GGG - Chr1:62096079-62096098 MsG0180003420.01.T01:CDS 35.0%
GGATTGATTACTAGTGTGTT+TGG + Chr1:62093063-62093082 None:intergenic 35.0%
GGCATAGATACCTTAATTGT+TGG + Chr1:62091987-62092006 None:intergenic 35.0%
GGGCTCCTTTATAAAATGTA+GGG + Chr1:62093348-62093367 None:intergenic 35.0%
GTCATTGTCTTTCTCATTTC+TGG - Chr1:62091440-62091459 MsG0180003420.01.T01:intron 35.0%
GTGCTTATATATAGAGACAG+AGG - Chr1:62093148-62093167 MsG0180003420.01.T01:intron 35.0%
TACTAGTGTGTTTGGATTCA+AGG + Chr1:62093055-62093074 None:intergenic 35.0%
TATGGAGATTATCACGAACA+AGG - Chr1:62094769-62094788 MsG0180003420.01.T01:intron 35.0%
TCCCATTTATAACGTTTCTC+TGG + Chr1:62091691-62091710 None:intergenic 35.0%
TCCGCATTCACTAAAAACAA+AGG + Chr1:62094070-62094089 None:intergenic 35.0%
TCTATGTTGTTGGTACCTAT+AGG + Chr1:62094711-62094730 None:intergenic 35.0%
TGAAACTTGTAATTGGTTGG+TGG + Chr1:62093268-62093287 None:intergenic 35.0%
TGGATTGTCACTGAAAAACT+TGG - Chr1:62095752-62095771 MsG0180003420.01.T01:intron 35.0%
TGTATGATGATCCTATCAGA+AGG + Chr1:62091942-62091961 None:intergenic 35.0%
TGTGTGTTGGAAAATATGGA+AGG + Chr1:62093200-62093219 None:intergenic 35.0%
TTGATGGAAGGAACTTATGA+AGG - Chr1:62093459-62093478 MsG0180003420.01.T01:intron 35.0%
TTGCCTTAGACCATATCTAA+TGG - Chr1:62095120-62095139 MsG0180003420.01.T01:intron 35.0%
TTGGTTGAGAGAGTTTACAT+GGG - Chr1:62091628-62091647 MsG0180003420.01.T01:intron 35.0%
TTTACCATTGAAGCCAAAGA+AGG + Chr1:62094176-62094195 None:intergenic 35.0%
TTTATACCTCTCCAATTTGC+AGG - Chr1:62094508-62094527 MsG0180003420.01.T01:intron 35.0%
TTTCTTTGTTCGGAAGATTG+TGG - Chr1:62094925-62094944 MsG0180003420.01.T01:intron 35.0%
! AACCAGAACCTGATTTTCTT+TGG - Chr1:62092393-62092412 MsG0180003420.01.T01:intron 35.0%
! AAGCTTCTTTTAATCACGGT+GGG - Chr1:62092998-62093017 MsG0180003420.01.T01:intron 35.0%
! ACATGTCCTTTTTGATGAGT+AGG - Chr1:62096541-62096560 MsG0180003420.01.T01:five_prime_UTR 35.0%
! ACCCTTTTATTAGAGGCAAA+GGG + Chr1:62093130-62093149 None:intergenic 35.0%
! CAAGTACATTTTCAACCAAG+TGG - Chr1:62091417-62091436 MsG0180003420.01.T01:intron 35.0%
! GTACGCCCTACATTTTATAA+AGG - Chr1:62093340-62093359 MsG0180003420.01.T01:CDS 35.0%
! GTCTAAGGCAAATAGAAGAA+AGG + Chr1:62095111-62095130 None:intergenic 35.0%
! GTTTACAGCTTGAGTTTGTT+TGG - Chr1:62091527-62091546 MsG0180003420.01.T01:intron 35.0%
!! AAATTTCCATCCTTTGAGAC+TGG + Chr1:62094489-62094508 None:intergenic 35.0%
!! AAGCTCTAAAGTACCTGATT+AGG - Chr1:62092629-62092648 MsG0180003420.01.T01:intron 35.0%
!! AATTGGTTGGTGGTTTGATA+GGG + Chr1:62093258-62093277 None:intergenic 35.0%
!! GCAAAGGGTGCTTATATATA+GGG + Chr1:62093115-62093134 None:intergenic 35.0%
!! TAATTGGTTGGTGGTTTGAT+AGG + Chr1:62093259-62093278 None:intergenic 35.0%
!! TTAAAAGGGTGATGATGGAA+GGG + Chr1:62095045-62095064 None:intergenic 35.0%
!! TTTAAAAGGGTGATGATGGA+AGG + Chr1:62095046-62095065 None:intergenic 35.0%
!!! CCCTTTGTTTTTAGTGAATG+CGG - Chr1:62094066-62094085 MsG0180003420.01.T01:intron 35.0%
AAGGGTAAAGCTAGTGGTAA+AGG - Chr1:62095785-62095804 MsG0180003420.01.T01:intron 40.0%
AGCCAAATCCATGTCTTCAA+CGG + Chr1:62094459-62094478 None:intergenic 40.0%
ATATAAACAGCCCCCCATTT+AGG + Chr1:62095022-62095041 None:intergenic 40.0%
ATGCAAAGCAGGTAAATGGT+TGG + Chr1:62091215-62091234 None:intergenic 40.0%
ATGGTTCGCCAAAGAAAATC+AGG + Chr1:62092404-62092423 None:intergenic 40.0%
CAACAACATAGATGGTCATG+TGG - Chr1:62094719-62094738 MsG0180003420.01.T01:intron 40.0%
CACATGACCATCTATGTTGT+TGG + Chr1:62094721-62094740 None:intergenic 40.0%
CACCCTTTGCCTCTAATAAA+AGG - Chr1:62093125-62093144 MsG0180003420.01.T01:CDS 40.0%
CACTATATCAGCCTAGTAGT+TGG + Chr1:62093756-62093775 None:intergenic 40.0%
CAGAAAAGAAACTGTGGAAG+AGG + Chr1:62091333-62091352 None:intergenic 40.0%
CATGTCTCTACATCGAACAA+AGG - Chr1:62095688-62095707 MsG0180003420.01.T01:intron 40.0%
CATTTATGGCTGCATTGAGT+TGG - Chr1:62093649-62093668 MsG0180003420.01.T01:CDS 40.0%
CCATGCGATGAGATTAGATT+AGG + Chr1:62094202-62094221 None:intergenic 40.0%
CCTAATCTAATCTCATCGCA+TGG - Chr1:62094199-62094218 MsG0180003420.01.T01:intron 40.0%
CGCTACATTGCAGAAATCTA+GGG + Chr1:62093368-62093387 None:intergenic 40.0%
CTTTGTTCGATGTAGAGACA+TGG + Chr1:62095690-62095709 None:intergenic 40.0%
GCATTCTTCATCATGGCATT+TGG - Chr1:62096141-62096160 MsG0180003420.01.T01:CDS 40.0%
GCTTGAACAAGACCAATATC+AGG + Chr1:62092446-62092465 None:intergenic 40.0%
GGAACTTGAACAAGAACCAT+AGG + Chr1:62091754-62091773 None:intergenic 40.0%
GGCTGCTATGATCTTATGTA+TGG - Chr1:62096078-62096097 MsG0180003420.01.T01:CDS 40.0%
GGGAAACTCTAATTACCCTA+TGG - Chr1:62091735-62091754 MsG0180003420.01.T01:intron 40.0%
GTCATGCAGAAAAGAAACTG+TGG + Chr1:62091339-62091358 None:intergenic 40.0%
GTGAATAAGTGAGAAGTCTG+AGG + Chr1:62093719-62093738 None:intergenic 40.0%
GTTGGTTGAGAGAGTTTACA+TGG - Chr1:62091627-62091646 MsG0180003420.01.T01:intron 40.0%
TAACGCAAGTGGTTAATGCA+TGG + Chr1:62096600-62096619 None:intergenic 40.0%
TACAAGTAGAATGCCGTAGA+TGG - Chr1:62092234-62092253 MsG0180003420.01.T01:intron 40.0%
TACATGTCTAAAGGTTAGGC+TGG + Chr1:62095296-62095315 None:intergenic 40.0%
TATAAACAGCCCCCCATTTA+GGG + Chr1:62095021-62095040 None:intergenic 40.0%
TCGCTACATTGCAGAAATCT+AGG + Chr1:62093369-62093388 None:intergenic 40.0%
TGCTTATATATAGGGACGGA+GGG + Chr1:62093107-62093126 None:intergenic 40.0%
TGTCAATGCCAAGTTCTTCT+AGG + Chr1:62096193-62096212 None:intergenic 40.0%
TGTGTTACCTGCAACTGTTA+TGG - Chr1:62094979-62094998 MsG0180003420.01.T01:intron 40.0%
TTACAAAGCAGGTGCACTAA+AGG - Chr1:62092307-62092326 MsG0180003420.01.T01:intron 40.0%
! AGGGTGCTTATATATAGGGA+CGG + Chr1:62093111-62093130 None:intergenic 40.0%
! CACCCTTTTATTAGAGGCAA+AGG + Chr1:62093131-62093150 None:intergenic 40.0%
! GAAGCTTCTTTTAATCACGG+TGG - Chr1:62092997-62093016 MsG0180003420.01.T01:intron 40.0%
! TTCGATTTAGGATTGGAGAC+AGG - Chr1:62095819-62095838 MsG0180003420.01.T01:intron 40.0%
!! CATTGCAGAAAGTGTCTTTG+TGG - Chr1:62094876-62094895 MsG0180003420.01.T01:intron 40.0%
!! GGCAAAGGGTGCTTATATAT+AGG + Chr1:62093116-62093135 None:intergenic 40.0%
!! TTATCAATTGGTGCTGCATG+TGG - Chr1:62091906-62091925 MsG0180003420.01.T01:intron 40.0%
AAAGCAGGTGCACTAAAGGA+GGG - Chr1:62092311-62092330 MsG0180003420.01.T01:intron 45.0%
AACACTGCAACTCTCAGCAA+TGG + Chr1:62091580-62091599 None:intergenic 45.0%
ACATCATCAACGACATGCCT+AGG + Chr1:62091609-62091628 None:intergenic 45.0%
ATGGAACCTGCAAATTGGAG+AGG + Chr1:62094517-62094536 None:intergenic 45.0%
CAAACGTTCGCAATATGCAG+GGG - Chr1:62093681-62093700 MsG0180003420.01.T01:CDS 45.0%
CAAATCCATGTCTTCAACGG+TGG + Chr1:62094456-62094475 None:intergenic 45.0%
CACCGTTGAAGACATGGATT+TGG - Chr1:62094454-62094473 MsG0180003420.01.T01:intron 45.0%
CACCTTTGCTTCTCCATCTA+CGG + Chr1:62092250-62092269 None:intergenic 45.0%
CATCGGTCCGACATATTTGT+AGG + Chr1:62095523-62095542 None:intergenic 45.0%
CCAAACGTTCGCAATATGCA+GGG - Chr1:62093680-62093699 MsG0180003420.01.T01:CDS 45.0%
CGCCAAAGAAAATCAGGTTC+TGG + Chr1:62092398-62092417 None:intergenic 45.0%
CTCAGCAATGGTACGATCAA+TGG + Chr1:62091568-62091587 None:intergenic 45.0%
GAGAAAGACAATGACCCACT+TGG + Chr1:62091435-62091454 None:intergenic 45.0%
GATCATAGCAGCCACATAAG+AGG + Chr1:62096071-62096090 None:intergenic 45.0%
GCTTTCAAGGGTAAAGCTAG+TGG - Chr1:62095779-62095798 MsG0180003420.01.T01:intron 45.0%
GGATTCTACCTCCTCTTATG+TGG - Chr1:62096057-62096076 MsG0180003420.01.T01:CDS 45.0%
GGGGTGAGATTAACCTAATC+AGG + Chr1:62092645-62092664 None:intergenic 45.0%
GTGCTTATATATAGGGACGG+AGG + Chr1:62093108-62093127 None:intergenic 45.0%
GTTGCAGTGTTTCTTTGCCT+AGG - Chr1:62091589-62091608 MsG0180003420.01.T01:intron 45.0%
TAGAACCACCGTTGAAGACA+TGG - Chr1:62094448-62094467 MsG0180003420.01.T01:intron 45.0%
TCAGGTACCATAACAGTTGC+AGG + Chr1:62094989-62095008 None:intergenic 45.0%
TCCCAACTCCTAGAAGAACT+TGG - Chr1:62096182-62096201 MsG0180003420.01.T01:CDS 45.0%
TCTTCCTCTTACGCCTTCTT+TGG - Chr1:62094160-62094179 MsG0180003420.01.T01:intron 45.0%
TGAGGTTGTGGTCCCTAAAT+GGG - Chr1:62095006-62095025 MsG0180003420.01.T01:intron 45.0%
TGCAACTGTTATGGTACCTG+AGG - Chr1:62094988-62095007 MsG0180003420.01.T01:intron 45.0%
TGCGGGTGTATGGAGAATTT+CGG - Chr1:62094397-62094416 MsG0180003420.01.T01:intron 45.0%
TGTTATGGTACCTGAGGTTG+TGG - Chr1:62094994-62095013 MsG0180003420.01.T01:intron 45.0%
! ATTTCGGCGTTGAATGAAGC+TGG - Chr1:62094413-62094432 MsG0180003420.01.T01:intron 45.0%
! GCCAAGTTCTTCTAGGAGTT+GGG + Chr1:62096186-62096205 None:intergenic 45.0%
! TACGCCTTCTTTGGCTTCAA+TGG - Chr1:62094169-62094188 MsG0180003420.01.T01:intron 45.0%
! TGCCAAGTTCTTCTAGGAGT+TGG + Chr1:62096187-62096206 None:intergenic 45.0%
!! AGGCATGTCGTTGATGATGT+TGG - Chr1:62091609-62091628 MsG0180003420.01.T01:intron 45.0%
!! TTAAAATTATATGAATATTA+TGG - Chr1:62096659-62096678 MsG0180003420.01.T01:five_prime_UTR 5.0%
!! TTATTTATTTATTTATTAAG+TGG + Chr1:62095236-62095255 None:intergenic 5.0%
AAACACCTTTGCGCGTTCCA+AGG + Chr1:62093029-62093048 None:intergenic 50.0%
AAATGCCTTGGAACGCGCAA+AGG - Chr1:62093021-62093040 MsG0180003420.01.T01:intron 50.0%
AATCACGGTGGGAAATGCCT+TGG - Chr1:62093009-62093028 MsG0180003420.01.T01:intron 50.0%
AGGTTGTGGTCCCTAAATGG+GGG - Chr1:62095008-62095027 MsG0180003420.01.T01:intron 50.0%
CAAAGCAGGTGCACTAAAGG+AGG - Chr1:62092310-62092329 MsG0180003420.01.T01:intron 50.0%
CATAGCAGCCACATAAGAGG+AGG + Chr1:62096068-62096087 None:intergenic 50.0%
CATTTAGGGACCACAACCTC+AGG + Chr1:62095007-62095026 None:intergenic 50.0%
CCCTGCATATTGCGAACGTT+TGG + Chr1:62093683-62093702 None:intergenic 50.0%
CGTTGAATGAAGCTGGTGGA+TGG - Chr1:62094420-62094439 MsG0180003420.01.T01:intron 50.0%
CTGAGGTTGTGGTCCCTAAA+TGG - Chr1:62095005-62095024 MsG0180003420.01.T01:intron 50.0%
GAGGTTGTGGTCCCTAAATG+GGG - Chr1:62095007-62095026 MsG0180003420.01.T01:intron 50.0%
GCCAAACGTTCGCAATATGC+AGG - Chr1:62093679-62093698 MsG0180003420.01.T01:CDS 50.0%
GTTCAAGCTCGCTGGAAGTT+TGG - Chr1:62092458-62092477 MsG0180003420.01.T01:intron 50.0%
TACGTGCCAGTCTCAAAGGA+TGG - Chr1:62094480-62094499 MsG0180003420.01.T01:intron 50.0%
TGCCGTAGATGGAGAAGCAA+AGG - Chr1:62092245-62092264 MsG0180003420.01.T01:intron 50.0%
! AGCTAGCTTCTCCTCAAACG+TGG + Chr1:62092974-62092993 None:intergenic 50.0%
! GAAGCCAAAGAAGGCGTAAG+AGG + Chr1:62094167-62094186 None:intergenic 50.0%
! GCTAGCTTCTCCTCAAACGT+GGG + Chr1:62092973-62092992 None:intergenic 50.0%
!! GACTCAGTTGGCCTTCTGAT+AGG - Chr1:62091928-62091947 MsG0180003420.01.T01:intron 50.0%
!! GCTTTTCAAGGAGCGAGGAA+TGG - Chr1:62091499-62091518 MsG0180003420.01.T01:intron 50.0%
!! TGGATGCTTTTCAAGGAGCG+AGG - Chr1:62091494-62091513 MsG0180003420.01.T01:intron 50.0%
!! TTGGTCTTGTTCAAGCTCGC+TGG - Chr1:62092450-62092469 MsG0180003420.01.T01:intron 50.0%
GCGGCAAAAACCCACGTTTG+AGG - Chr1:62092960-62092979 MsG0180003420.01.T01:intron 55.0%
GCTGTACGTGCCAGTCTCAA+AGG - Chr1:62094476-62094495 MsG0180003420.01.T01:intron 55.0%
GGTTGTGGTCCCTAAATGGG+GGG - Chr1:62095009-62095028 MsG0180003420.01.T01:intron 55.0%
GTGCTGCATGTGGACTCAGT+TGG - Chr1:62091916-62091935 MsG0180003420.01.T01:intron 55.0%
TGTGCATGACACAGGGACTG+CGG - Chr1:62094379-62094398 MsG0180003420.01.T01:intron 55.0%
! CAAGGAGCGAGGAATGGACT+TGG - Chr1:62091505-62091524 MsG0180003420.01.T01:intron 55.0%
! TCGGCGTTGAATGAAGCTGG+TGG - Chr1:62094416-62094435 MsG0180003420.01.T01:intron 55.0%
ACACAGGGACTGCGGGTGTA+TGG - Chr1:62094387-62094406 MsG0180003420.01.T01:intron 60.0%
GTGCATGACACAGGGACTGC+GGG - Chr1:62094380-62094399 MsG0180003420.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 62091072 62096754 62091072 ID=MsG0180003420.01;Name=MsG0180003420.01
Chr1 mRNA 62091072 62096754 62091072 ID=MsG0180003420.01.T01;Parent=MsG0180003420.01;Name=MsG0180003420.01.T01;_AED=0.46;_eAED=0.46;_QI=421|0.87|0.88|0.88|1|1|9|0|492
Chr1 exon 62091072 62091141 62091072 ID=MsG0180003420.01.T01:exon:4486;Parent=MsG0180003420.01.T01
Chr1 exon 62091986 62092180 62091986 ID=MsG0180003420.01.T01:exon:4485;Parent=MsG0180003420.01.T01
Chr1 exon 62092743 62092942 62092743 ID=MsG0180003420.01.T01:exon:4484;Parent=MsG0180003420.01.T01
Chr1 exon 62093036 62093149 62093036 ID=MsG0180003420.01.T01:exon:4483;Parent=MsG0180003420.01.T01
Chr1 exon 62093297 62093433 62093297 ID=MsG0180003420.01.T01:exon:4482;Parent=MsG0180003420.01.T01
Chr1 exon 62093636 62093746 62093636 ID=MsG0180003420.01.T01:exon:4481;Parent=MsG0180003420.01.T01
Chr1 exon 62095347 62095599 62095347 ID=MsG0180003420.01.T01:exon:4480;Parent=MsG0180003420.01.T01
Chr1 exon 62095831 62095929 62095831 ID=MsG0180003420.01.T01:exon:4479;Parent=MsG0180003420.01.T01
Chr1 exon 62096034 62096754 62096034 ID=MsG0180003420.01.T01:exon:4478;Parent=MsG0180003420.01.T01
Chr1 five_prime_UTR 62096334 62096754 62096334 ID=MsG0180003420.01.T01:five_prime_utr;Parent=MsG0180003420.01.T01
Chr1 CDS 62096034 62096333 62096034 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62095831 62095929 62095831 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62095347 62095599 62095347 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62093636 62093746 62093636 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62093297 62093433 62093297 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62093036 62093149 62093036 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62092743 62092942 62092743 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62091986 62092180 62091986 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Chr1 CDS 62091072 62091141 62091072 ID=MsG0180003420.01.T01:cds;Parent=MsG0180003420.01.T01
Gene Sequence

>MsG0180003420.01.T01

ATGGATGCTTTTCAAGGAGCGAGGAATGGACTTGGTTTACAGCTTGAGTTTGTTTGGAGACACATCAGAGAGCCATTGATCGTACCATTGCTGAGAGTTGCAGTGTTTCTTTGCCTAGGCATGTCGTTGATGATGTTGGTTGAGAGAGTTTACATGGGAATTGTGATTTCTTTTGTGAAGTTGTTTGGTAGAAAACCAGAGAAACGTTATAAATGGGAGACTATTAAGGATGATGTTGAGTTGGGAAACTCTAATTACCCTATGGTTCTTGTTCAAGTTCCAATGTATAATGAAAGAGAGGTTTATCAGTTATCAATTGGTGCTGCATGTGGACTCAGTTGGCCTTCTGATAGGATCATCATACAAATTCTTGATGATTCAACTGATCCAACAATTAAGGAGTTGGTACAAGTAGAATGCCGTAGATGGAGAAGCAAAGGTGTGAACATAAAGTATGAAGTTAGGGACAATAGAAATGGTTACAAAGCAGGTGCACTAAAGGAGGGAATGAAACATAGCTATGTGAAACAATGTGATTATGTTGCTATCTTTGATGCTGATTTTCAACCAGAACCTGATTTTCTTTGGCGAACCATCCCTTTCCTTGTTAATAATCCTGATATTGGTCTTGTTCAAGCTCGCTGGAAGTTTGTGAATGCGGATGAATGTTTAATGACAAGGATGCAAGAGATGTCACTTAATTACCATTTTACAGTTGAACAAGAAGTGGGATCTTCCTCTTACGCCTTCTTTGGCTTCAATGGGACTGCGGGTGTATGGAGAATTTCGGCGTTGAATGAAGCTGGTGGATGGAAAGATAGAACCACCGTTGAAGACATGGATTTGGCTGTACGTGCCAGTCTCAAAGGATGGAAATTTTTATACCTCTCCAATTTGCAGGTTAAAAACGAATTGCCAAGTACTTTAAAAGCCTATAGGTACCAACAACATAGATGGTCATGTGGACCAGCCAATCTTTTCAGAAAAATGGTTATGGAGATTATCACGAACAAGAAAGTGTCTTTGTGGAAGAAGATATACGTTGTTTACAGTTTTTTCTTTGTTCGGAAGATTGTGGCCCACATCAACACATTTGTTTTCTATTGCATTGTGTTACCTGCAACTGTTATGGTACCTGAGGTTGTGGTCCCTAAATGGGGGGCTGTTTATATCCCTTCCATCATCACCCTTTTAAATGCTGTTGGAACTCCAAGGTCACTTCATTTACTTGTCTTTTGGATTTTATTCGAGAATACCATGTCTCTACATCGAACAAAGGCAACAATTATTGGTCTACTAGAGACTAGTAGAGTGAATGAATGGATTGTCACTGAAAAACTTGGAGATGCTTTCAAGGGTAAAGCTAGTGGTAAAGGACTCAAAAAGCTTCGATTTAGGATTGGAGACAGGGTGCATGACACTCATATCCATGTTGCGTTAAATATTTTGCAATTTCAGCTGTTATGGATGTTGCATTAA
Protein sequence

>MsG0180003420.01.T01

MDAFQGARNGLGLQLEFVWRHIREPLIVPLLRVAVFLCLGMSLMMLVERVYMGIVISFVKLFGRKPEKRYKWETIKDDVELGNSNYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKELVQVECRRWRSKGVNIKYEVRDNRNGYKAGALKEGMKHSYVKQCDYVAIFDADFQPEPDFLWRTIPFLVNNPDIGLVQARWKFVNADECLMTRMQEMSLNYHFTVEQEVGSSSYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLQVKNELPSTLKAYRYQQHRWSCGPANLFRKMVMEIITNKKVSLWKKIYVVYSFFFVRKIVAHINTFVFYCIVLPATVMVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLETSRVNEWIVTEKLGDAFKGKASGKGLKKLRFRIGDRVHDTHIHVALNILQFQLLWMLH*