AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038378.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038378.01.T01 MTR_7g052820 86.583 477 7 2 1 420 1 477 0.0 820
MsG0780038378.01.T01 MTR_8g011460 75.472 477 58 4 1 420 1 475 0.0 711
MsG0780038378.01.T01 MTR_5g098130 58.910 477 136 4 1 420 1 474 0.0 542
MsG0780038378.01.T01 MTR_5g098130 58.910 477 136 4 1 420 1 474 0.0 541
MsG0780038378.01.T01 MTR_5g094160 56.813 477 146 4 1 420 1 474 0.0 524
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038378.01.T01 AT5G48460 65.900 478 103 5 1 420 1 476 0.0 616
MsG0780038378.01.T01 AT4G26700 56.604 477 147 5 1 420 1 474 0.0 535
MsG0780038378.01.T01 AT4G26700 56.604 477 147 5 1 420 1 474 0.0 535
MsG0780038378.01.T01 AT4G26700 56.604 477 147 5 1 420 1 474 0.0 535
MsG0780038378.01.T01 AT4G26700 56.604 477 147 5 1 420 1 474 0.0 534
MsG0780038378.01.T01 AT4G26700 56.604 477 147 5 1 420 1 474 0.0 534
MsG0780038378.01.T01 AT4G26700 56.604 477 147 5 1 420 1 474 0.0 534
MsG0780038378.01.T01 AT5G35700 55.765 477 151 4 1 420 1 474 0.0 531
MsG0780038378.01.T01 AT5G55400 56.576 479 145 7 1 420 1 475 0.0 528
MsG0780038378.01.T01 AT5G55400 56.576 479 145 7 1 420 1 475 0.0 528
MsG0780038378.01.T01 AT5G55400 56.576 479 145 7 1 420 1 475 0.0 528
MsG0780038378.01.T01 AT2G04750 54.280 479 151 5 1 420 1 470 1.60e-172 498
MsG0780038378.01.T01 AT4G26700 59.547 309 66 4 169 420 19 325 7.25e-119 357

Find 66 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATCAAGTTGTGAAAAT+TGG 0.089478 7:-45453957 MsG0780038378.01.T01:CDS
ATGGAACAAGGACACCATTT+TGG 0.212285 7:+45458008 None:intergenic
GTTAAATTAGATACAATTAT+TGG 0.249136 7:-45455450 MsG0780038378.01.T01:intron
AAAGAAAACTCCTCAACTTT+TGG 0.252764 7:-45455414 MsG0780038378.01.T01:CDS
ATTATGTTACTTCTGTATTT+TGG 0.257711 7:+45457877 None:intergenic
CAAAAGACGGTGTTCTTCTT+TGG 0.259070 7:-45456178 MsG0780038378.01.T01:intron
TGTCACCTGGGATTGTTAAT+TGG 0.292139 7:-45454031 MsG0780038378.01.T01:CDS
GTCATAGTTCAAAGTTGTTT+TGG 0.296144 7:+45458045 None:intergenic
GCAATCAAGTTGTGAAAATT+GGG 0.367622 7:-45453956 MsG0780038378.01.T01:CDS
AGCTCTTCCCGGTCCCAAAA+TGG 0.367637 7:-45458022 MsG0780038378.01.T01:five_prime_UTR
CTCAATTCTGCTAAAGCAAT+TGG 0.371468 7:-45455956 MsG0780038378.01.T01:CDS
TTTCGATATTTCACCCGTTC+CGG 0.380068 7:+45454518 None:intergenic
TATAGCTATGTCAAGTCATT+GGG 0.381643 7:-45457827 MsG0780038378.01.T01:exon
CGCCTTTGGATTAATAGTCT+TGG 0.397407 7:-45454577 MsG0780038378.01.T01:CDS
TGTAACATACGACGCCTTCT+CGG 0.401302 7:+45456286 None:intergenic
GAAGTTCAACTTGTGTAAAC+TGG 0.405591 7:+45457773 None:intergenic
AAATTTCTCCTCCGATGTTA+AGG 0.410735 7:-45455194 MsG0780038378.01.T01:intron
CAGATGCAAGAACATTTAGA+AGG 0.414961 7:+45454940 None:intergenic
ATGTCAAGATTAAAAGTTGT+AGG 0.425968 7:-45457211 MsG0780038378.01.T01:CDS
TGAACTATGACAGCTCTTCC+CGG 0.433364 7:-45458033 MsG0780038378.01.T01:five_prime_UTR
ATATATCAACAATGTCTTTG+AGG 0.451615 7:-45454545 MsG0780038378.01.T01:CDS
TTATAGCTATGTCAAGTCAT+TGG 0.453494 7:-45457828 MsG0780038378.01.T01:exon
GGCACTCAAGACTTAATTGA+AGG 0.463220 7:-45455914 MsG0780038378.01.T01:CDS
TTTGGAAAGAGTGTTGGAGA+AGG 0.477080 7:+45457983 None:intergenic
ACTCTTGACAAGGTGTCACC+TGG 0.480499 7:-45454044 MsG0780038378.01.T01:CDS
GTATTATAGTTTCAGATCCA+TGG 0.487713 7:-45457804 MsG0780038378.01.T01:CDS
GCTGGTTGGTTGGGATAGTA+AGG 0.490164 7:-45455390 MsG0780038378.01.T01:intron
ACAATGTCTTTGAGGATGTC+CGG 0.491002 7:-45454537 MsG0780038378.01.T01:CDS
GAGAGTGGAAAGCTTACCAT+TGG 0.491598 7:-45457250 MsG0780038378.01.T01:CDS
CAATTGCTTTAGCAGAATTG+AGG 0.493631 7:+45455957 None:intergenic
AAGAGTGTTGGAGAAGGAGA+TGG 0.494731 7:+45457989 None:intergenic
TCTTTGAGGATGTCCGGAAC+GGG 0.497370 7:-45454531 MsG0780038378.01.T01:intron
TCGAAGAGATCGTTGGTTGA+AGG 0.509178 7:+45456206 None:intergenic
CACAATAAGCGAATCCGAGA+AGG 0.518667 7:-45456300 MsG0780038378.01.T01:CDS
ATCTTCCAATTAACAATCCC+AGG 0.521674 7:+45454026 None:intergenic
TTCCAAGACTATTAATCCAA+AGG 0.523555 7:+45454575 None:intergenic
TTAAATGGCATCTTTATAGG+AGG 0.524199 7:+45453993 None:intergenic
CTCAAGACTTAATTGAAGGA+AGG 0.528851 7:-45455910 MsG0780038378.01.T01:CDS
TGCGATTTCGAAGAGATCGT+TGG 0.536044 7:+45456199 None:intergenic
CCTCACATTAAACACGTGTC+TGG 0.536947 7:-45453758 MsG0780038378.01.T01:CDS
AAAGTGTTTGGAAAGAGTGT+TGG 0.538959 7:+45457977 None:intergenic
GCACGTTCATCGATAGTTGT+CGG 0.546644 7:+45456037 None:intergenic
GTCTTTGAGGATGTCCGGAA+CGG 0.548304 7:-45454532 MsG0780038378.01.T01:CDS
ATGATCATGAGGAGAGAGAG+TGG 0.558769 7:-45457265 MsG0780038378.01.T01:CDS
CAAGAGGAAGGTATTTCTTG+AGG 0.564052 7:+45456231 None:intergenic
TTGCAGTAAACTTATTAATG+TGG 0.565860 7:-45456065 MsG0780038378.01.T01:intron
TCAAGACTTAATTGAAGGAA+GGG 0.582324 7:-45455909 MsG0780038378.01.T01:intron
CTCTTGACAAGGTGTCACCT+GGG 0.592426 7:-45454043 MsG0780038378.01.T01:CDS
CCAGACACGTGTTTAATGTG+AGG 0.598559 7:+45453758 None:intergenic
TTGGAGAAGGAGATGGAACA+AGG 0.601048 7:+45457996 None:intergenic
CTCTTCGAAATCGCAAAAGA+CGG 0.602850 7:-45456191 MsG0780038378.01.T01:CDS
GGATGTACCGTAGTCAACAT+TGG 0.605781 7:-45455935 MsG0780038378.01.T01:CDS
TTGAGTGCCAATGTTGACTA+CGG 0.609361 7:+45455928 None:intergenic
CTTTGAAGACAAGTCTCCAA+TGG 0.613064 7:+45457234 None:intergenic
CATACATAGACTCATTGCAT+TGG 0.613443 7:-45457918 MsG0780038378.01.T01:five_prime_UTR
GATTGTAGTTCATGATCATG+AGG 0.618073 7:-45457276 MsG0780038378.01.T01:intron
AAACTCATCAGCATTCCTCA+AGG 0.625349 7:-45456345 MsG0780038378.01.T01:CDS
CCAACCAGCTCCAAAAGTTG+AGG 0.628409 7:+45455404 None:intergenic
TACAGTTACCTTAACATCGG+AGG 0.637461 7:+45455186 None:intergenic
TCGTTGGTTGAAGGATCAAG+AGG 0.643960 7:+45456215 None:intergenic
TGTGTGAAGCAATGTTGTAG+TGG 0.648045 7:+45456319 None:intergenic
TATCATCTAGCAATGAGTCA+AGG 0.651529 7:+45454629 None:intergenic
TGGTTGAAGGATCAAGAGGA+AGG 0.651670 7:+45456219 None:intergenic
ATGTTGTAGTGGCAACCTTG+AGG 0.654723 7:+45456330 None:intergenic
ATATACAGTTACCTTAACAT+CGG 0.672794 7:+45455183 None:intergenic
ATAGCTATGTCAAGTCATTG+GGG 0.689294 7:-45457826 MsG0780038378.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAGATTTTTAGTTAT+AGG - Chr7:45453965-45453984 MsG0780038378.01.T01:CDS 10.0%
!!! TTTTTATTTTTACATTTTGT+AGG - Chr7:45456161-45456180 MsG0780038378.01.T01:intron 10.0%
!! AAATTACTAGAAAGTAAAAA+AGG + Chr7:45454867-45454886 None:intergenic 15.0%
!! AATATCTTAAAAAATGATGA+TGG + Chr7:45454359-45454378 None:intergenic 15.0%
!! GGATATAAAAAATTAATACT+AGG - Chr7:45457935-45457954 MsG0780038378.01.T01:five_prime_UTR 15.0%
!! GTAAAAATAAAAATAGAGAA+GGG + Chr7:45456154-45456173 None:intergenic 15.0%
!! GTTAAATTAGATACAATTAT+TGG - Chr7:45456367-45456386 MsG0780038378.01.T01:CDS 15.0%
!! TGTAAAAATAAAAATAGAGA+AGG + Chr7:45456155-45456174 None:intergenic 15.0%
!!! AATCATATATTTACTTTTTG+TGG - Chr7:45454134-45454153 MsG0780038378.01.T01:intron 15.0%
!!! CAAAATCTAATCTTTTTTTT+TGG + Chr7:45454306-45454325 None:intergenic 15.0%
!!! TATCTAAAAGTTGATAAAAA+AGG + Chr7:45453868-45453887 None:intergenic 15.0%
!!! TGAAAAACATTTTAAATGTT+TGG + Chr7:45458017-45458036 None:intergenic 15.0%
!!! TTTTAATCATTCTTTCATTT+AGG - Chr7:45457651-45457670 MsG0780038378.01.T01:intron 15.0%
!! AAAGTTATGAAATTAGTGTT+AGG - Chr7:45454945-45454964 MsG0780038378.01.T01:CDS 20.0%
!! AATAAAAATCCAATCTTTCT+AGG + Chr7:45454471-45454490 None:intergenic 20.0%
!! ATATGAAAAGATAAAAGTGA+AGG + Chr7:45456460-45456479 None:intergenic 20.0%
!! ATTATTATTATCACCTGATT+TGG + Chr7:45457062-45457081 None:intergenic 20.0%
!! ATTTGAGTGATATGAAATAA+TGG - Chr7:45455372-45455391 MsG0780038378.01.T01:intron 20.0%
!! CATATTTCATATGTTAACAA+AGG + Chr7:45457103-45457122 None:intergenic 20.0%
!! TTCATGTTTATTAAACTAAC+AGG - Chr7:45456506-45456525 MsG0780038378.01.T01:intron 20.0%
!! TTTAATTATCTTGAAACAGA+GGG + Chr7:45456722-45456741 None:intergenic 20.0%
!! TTTATTAAACTAACAGGATA+TGG - Chr7:45456512-45456531 MsG0780038378.01.T01:intron 20.0%
!!! AATCAAAATCTAATCCTTTT+TGG + Chr7:45454165-45454184 None:intergenic 20.0%
!!! ATTATGTTACTTCTGTATTT+TGG + Chr7:45453943-45453962 None:intergenic 20.0%
!!! ATTGATTCACTATAATTTGT+AGG + Chr7:45457974-45457993 None:intergenic 20.0%
!!! CAATTCTCAACTTTTTTAAA+TGG + Chr7:45457842-45457861 None:intergenic 20.0%
!!! CTTAAATTTTAATTCCCTTA+TGG + Chr7:45455346-45455365 None:intergenic 20.0%
!!! TATATTCTGTTTTCTTCAAA+TGG + Chr7:45456590-45456609 None:intergenic 20.0%
!!! TATTTTTACATTTTGTAGGT+TGG - Chr7:45456165-45456184 MsG0780038378.01.T01:intron 20.0%
!!! TTGTTTTCTTCTACATTTAT+CGG - Chr7:45457559-45457578 MsG0780038378.01.T01:intron 20.0%
!!! TTTTGTTAGAATAGTGATTA+TGG + Chr7:45457597-45457616 None:intergenic 20.0%
!!! TTTTTAAATGGCATCTTTAT+AGG + Chr7:45457830-45457849 None:intergenic 20.0%
! AAAAAGATTACTTAACCCTT+GGG - Chr7:45455812-45455831 MsG0780038378.01.T01:intron 25.0%
! AAAGTAAAAAAGGTAACTTG+TGG + Chr7:45454857-45454876 None:intergenic 25.0%
! AATGTTTCCAAAAAAAATGC+TGG + Chr7:45455711-45455730 None:intergenic 25.0%
! ATATACAGTTACCTTAACAT+CGG + Chr7:45456637-45456656 None:intergenic 25.0%
! ATATATCAACAATGTCTTTG+AGG - Chr7:45457272-45457291 MsG0780038378.01.T01:intron 25.0%
! ATGTCAAGATTAAAAGTTGT+AGG - Chr7:45454606-45454625 MsG0780038378.01.T01:CDS 25.0%
! GTTTAATTATCTTGAAACAG+AGG + Chr7:45456723-45456742 None:intergenic 25.0%
! TCATTGTAATTAAGCTTCTT+GGG - Chr7:45454333-45454352 MsG0780038378.01.T01:intron 25.0%
! TCTGATTTCACAGATTATTA+AGG - Chr7:45456233-45456252 MsG0780038378.01.T01:CDS 25.0%
! TGTCTAATGTAAAGAAAAAG+TGG + Chr7:45455208-45455227 None:intergenic 25.0%
! TTCATTGTAATTAAGCTTCT+TGG - Chr7:45454332-45454351 MsG0780038378.01.T01:intron 25.0%
! TTCTATCATGCAAAGAATTA+GGG + Chr7:45457474-45457493 None:intergenic 25.0%
! TTGAATGTAACTACATATGT+CGG - Chr7:45455100-45455119 MsG0780038378.01.T01:intron 25.0%
! TTGCAGTAAACTTATTAATG+TGG - Chr7:45455752-45455771 MsG0780038378.01.T01:intron 25.0%
! TTGTTGATCATACTATTGTT+TGG - Chr7:45454377-45454396 MsG0780038378.01.T01:intron 25.0%
! TTTACACTGTGTATATGAAT+TGG - Chr7:45456062-45456081 MsG0780038378.01.T01:CDS 25.0%
! TTTCTATCATGCAAAGAATT+AGG + Chr7:45457475-45457494 None:intergenic 25.0%
!! TAATTCAAGTTCTTTGTAAC+AGG - Chr7:45457130-45457149 MsG0780038378.01.T01:CDS 25.0%
!! TTTGAATTTGAACTGTTTTG+TGG - Chr7:45457355-45457374 MsG0780038378.01.T01:intron 25.0%
!!! ATAAAAAAGGTGAAAGTGTT+TGG + Chr7:45453855-45453874 None:intergenic 25.0%
!!! CGTTTTGTTCAAAAATACTA+TGG + Chr7:45457438-45457457 None:intergenic 25.0%
!!! TGAGTCATGATCATTTTTTA+TGG - Chr7:45454513-45454532 MsG0780038378.01.T01:intron 25.0%
!!! TGATTTTGAATTGTTTCTCA+AGG - Chr7:45454698-45454717 MsG0780038378.01.T01:intron 25.0%
AAATATGTGCAACAAAAGCA+AGG + Chr7:45457038-45457057 None:intergenic 30.0%
AACCAATACACTTCAAAAGT+TGG + Chr7:45454799-45454818 None:intergenic 30.0%
AATCGAAGAGCTGAAAAATA+TGG + Chr7:45455303-45455322 None:intergenic 30.0%
ACATTAGACACAAAAAGAAG+AGG - Chr7:45455218-45455237 MsG0780038378.01.T01:CDS 30.0%
ATTTCCAGCAATATTTACCA+AGG + Chr7:45457903-45457922 None:intergenic 30.0%
CAAAAAGATTACTTAACCCT+TGG - Chr7:45455811-45455830 MsG0780038378.01.T01:intron 30.0%
CAGAAAAAATCTTGTTGAGA+TGG - Chr7:45456556-45456575 MsG0780038378.01.T01:intron 30.0%
CATTAGACACAAAAAGAAGA+GGG - Chr7:45455219-45455238 MsG0780038378.01.T01:CDS 30.0%
GTATTATAGTTTCAGATCCA+TGG - Chr7:45454013-45454032 MsG0780038378.01.T01:CDS 30.0%
GTTGCTATAATAATGATGAC+AGG - Chr7:45455394-45455413 MsG0780038378.01.T01:CDS 30.0%
TAGATCAACAAAAGAAGGAA+AGG + Chr7:45454988-45455007 None:intergenic 30.0%
TATAGCTATGTCAAGTCATT+GGG - Chr7:45453990-45454009 MsG0780038378.01.T01:CDS 30.0%
TCAAGACTTAATTGAAGGAA+GGG - Chr7:45455908-45455927 MsG0780038378.01.T01:intron 30.0%
TCATCAAACTATTGTTTGCT+TGG - Chr7:45454090-45454109 MsG0780038378.01.T01:intron 30.0%
TCGGAAAACATAGTCATAAT+TGG - Chr7:45457516-45457535 MsG0780038378.01.T01:intron 30.0%
TGTTGTAGATCAACAAAAGA+AGG + Chr7:45454993-45455012 None:intergenic 30.0%
TTAAATGGCATCTTTATAGG+AGG + Chr7:45457827-45457846 None:intergenic 30.0%
TTATAGCTATGTCAAGTCAT+TGG - Chr7:45453989-45454008 MsG0780038378.01.T01:CDS 30.0%
TTCATTGTAATTCAGCTTCT+GGG - Chr7:45454188-45454207 MsG0780038378.01.T01:intron 30.0%
TTCCAAGACTATTAATCCAA+AGG + Chr7:45457245-45457264 None:intergenic 30.0%
TTGTTGATCATACTATTGCT+TGG - Chr7:45454222-45454241 MsG0780038378.01.T01:intron 30.0%
TTTAATGCCAAACACCATAA+GGG - Chr7:45455329-45455348 MsG0780038378.01.T01:intron 30.0%
TTTAATTCCCTTATGGTGTT+TGG + Chr7:45455339-45455358 None:intergenic 30.0%
TTTCATTGTAATTCAGCTTC+TGG - Chr7:45454187-45454206 MsG0780038378.01.T01:intron 30.0%
! AAAGAAAACTCCTCAACTTT+TGG - Chr7:45456403-45456422 MsG0780038378.01.T01:CDS 30.0%
! AAAGTTGAGGAGTTTTCTTT+AGG + Chr7:45456403-45456422 None:intergenic 30.0%
! GAAACAACTAAAGTTTTCCT+TGG - Chr7:45457883-45457902 MsG0780038378.01.T01:five_prime_UTR 30.0%
! GATTTTCATTTCTTTCCCAA+GGG + Chr7:45455830-45455849 None:intergenic 30.0%
! GCAATCAAGTTGTGAAAATT+GGG - Chr7:45457861-45457880 MsG0780038378.01.T01:five_prime_UTR 30.0%
! GTCATAGTTCAAAGTTGTTT+TGG + Chr7:45453775-45453794 None:intergenic 30.0%
! TGATTTTCATTTCTTTCCCA+AGG + Chr7:45455831-45455850 None:intergenic 30.0%
! TGCAATCAAGTTGTGAAAAT+TGG - Chr7:45457860-45457879 MsG0780038378.01.T01:five_prime_UTR 30.0%
! TGCATGATAGAAAAGTATAG+CGG - Chr7:45457482-45457501 MsG0780038378.01.T01:intron 30.0%
! TTGCACATATTTTCCAAATC+AGG - Chr7:45457046-45457065 MsG0780038378.01.T01:intron 30.0%
! TTTTCCTTGGTAAATATTGC+TGG - Chr7:45457896-45457915 MsG0780038378.01.T01:five_prime_UTR 30.0%
! TTTTTGTGGATTCTCCAAAA+AGG - Chr7:45454148-45454167 MsG0780038378.01.T01:intron 30.0%
!!! AACCAACTTTTGAAGTGTAT+TGG - Chr7:45454794-45454813 MsG0780038378.01.T01:intron 30.0%
!!! ACTAGTTTTGCTCTTTCAAA+CGG + Chr7:45456938-45456957 None:intergenic 30.0%
!!! CATCTCAACAAGATTTTTTC+TGG + Chr7:45456558-45456577 None:intergenic 30.0%
!!! CATTATGCCAGCATTTTTTT+TGG - Chr7:45455701-45455720 MsG0780038378.01.T01:intron 30.0%
!!! GTATTGGTTCTTTTGCTTTT+TGG - Chr7:45454810-45454829 MsG0780038378.01.T01:intron 30.0%
!!! GTTTTAATTTCAGCGTCATT+TGG - Chr7:45456203-45456222 MsG0780038378.01.T01:CDS 30.0%
AAATTTCTCCTCCGATGTTA+AGG - Chr7:45456623-45456642 MsG0780038378.01.T01:intron 35.0%
ACAAAAGCAAGGTTCAGATT+TGG + Chr7:45457027-45457046 None:intergenic 35.0%
ACATGCTACAGAAAAAATGC+AGG + Chr7:45455268-45455287 None:intergenic 35.0%
ACTGCAAGAGATATAGTTGA+AGG - Chr7:45456997-45457016 MsG0780038378.01.T01:intron 35.0%
AGCACTTACACTTCAAATTG+AGG + Chr7:45455144-45455163 None:intergenic 35.0%
ATAGCTATGTCAAGTCATTG+GGG - Chr7:45453991-45454010 MsG0780038378.01.T01:CDS 35.0%
ATCTTCCAATTAACAATCCC+AGG + Chr7:45457794-45457813 None:intergenic 35.0%
CAAGTTCTTTGTAACAGGAA+TGG - Chr7:45457135-45457154 MsG0780038378.01.T01:CDS 35.0%
CAATTGCTTTAGCAGAATTG+AGG + Chr7:45455863-45455882 None:intergenic 35.0%
CAGATGCAAGAACATTTAGA+AGG + Chr7:45456880-45456899 None:intergenic 35.0%
CATACATAGACTCATTGCAT+TGG - Chr7:45453899-45453918 MsG0780038378.01.T01:intron 35.0%
CATGCTACAGAAAAAATGCA+GGG + Chr7:45455267-45455286 None:intergenic 35.0%
CTCAAGACTTAATTGAAGGA+AGG - Chr7:45455907-45455926 MsG0780038378.01.T01:intron 35.0%
CTCAATTCTGCTAAAGCAAT+TGG - Chr7:45455861-45455880 MsG0780038378.01.T01:intron 35.0%
CTTTAATGCCAAACACCATA+AGG - Chr7:45455328-45455347 MsG0780038378.01.T01:intron 35.0%
GAAGTTCAACTTGTGTAAAC+TGG + Chr7:45454047-45454066 None:intergenic 35.0%
GATTGTAGTTCATGATCATG+AGG - Chr7:45454541-45454560 MsG0780038378.01.T01:CDS 35.0%
GCACTTACACTTCAAATTGA+GGG + Chr7:45455143-45455162 None:intergenic 35.0%
TATCATCTAGCAATGAGTCA+AGG + Chr7:45457191-45457210 None:intergenic 35.0%
TCACGAGTAAACTTGTAAAC+TGG - Chr7:45457411-45457430 MsG0780038378.01.T01:intron 35.0%
TCATCAACATATGACTCTTG+TGG - Chr7:45456826-45456845 MsG0780038378.01.T01:intron 35.0%
TCTTGAACATGCTGAAAGAT+GGG - Chr7:45456958-45456977 MsG0780038378.01.T01:intron 35.0%
TTCTTGAACATGCTGAAAGA+TGG - Chr7:45456957-45456976 MsG0780038378.01.T01:intron 35.0%
! AAAGTGTTTGGAAAGAGTGT+TGG + Chr7:45453843-45453862 None:intergenic 35.0%
! AGAAGGGCTATTTCAGAAAA+TGG + Chr7:45456138-45456157 None:intergenic 35.0%
! GTTGATTCTCCTAGAAAGAT+TGG - Chr7:45454459-45454478 MsG0780038378.01.T01:intron 35.0%
! TTTTTCACAGCTAATGTCGA+TGG + Chr7:45456914-45456933 None:intergenic 35.0%
!! ACTTTTAGAGACTCTTGACA+AGG - Chr7:45457763-45457782 MsG0780038378.01.T01:CDS 35.0%
!!! ACTTTTGCAAGTTCTAGAAC+AGG - Chr7:45455434-45455453 MsG0780038378.01.T01:CDS 35.0%
!!! CTCAACAAGATTTTTTCTGG+TGG + Chr7:45456555-45456574 None:intergenic 35.0%
AAACTCATCAGCATTCCTCA+AGG - Chr7:45455472-45455491 MsG0780038378.01.T01:intron 40.0%
ATAAGCTTCTGCATCCTACA+AGG + Chr7:45456852-45456871 None:intergenic 40.0%
CAAAAGACGGTGTTCTTCTT+TGG - Chr7:45455639-45455658 MsG0780038378.01.T01:intron 40.0%
CAATGATCGATCACGATGTT+TGG + Chr7:45457542-45457561 None:intergenic 40.0%
CGCCTTTGGATTAATAGTCT+TGG - Chr7:45457240-45457259 MsG0780038378.01.T01:CDS 40.0%
CTCTTCGAAATCGCAAAAGA+CGG - Chr7:45455626-45455645 MsG0780038378.01.T01:intron 40.0%
GGCACTCAAGACTTAATTGA+AGG - Chr7:45455903-45455922 MsG0780038378.01.T01:intron 40.0%
GGCTATATTCGCTTACAAGT+GGG - Chr7:45457376-45457395 MsG0780038378.01.T01:intron 40.0%
TACAGTTACCTTAACATCGG+AGG + Chr7:45456634-45456653 None:intergenic 40.0%
TGGCTATATTCGCTTACAAG+TGG - Chr7:45457375-45457394 MsG0780038378.01.T01:intron 40.0%
TGTCACCTGGGATTGTTAAT+TGG - Chr7:45457786-45457805 MsG0780038378.01.T01:CDS 40.0%
TGTGTGAAGCAATGTTGTAG+TGG + Chr7:45455501-45455520 None:intergenic 40.0%
TTTCAGCGTCATTTGGTACT+AGG - Chr7:45456210-45456229 MsG0780038378.01.T01:CDS 40.0%
TTTCGATATTTCACCCGTTC+CGG + Chr7:45457302-45457321 None:intergenic 40.0%
! AAGAGAGAGTTTTTCGCCTT+TGG - Chr7:45457226-45457245 MsG0780038378.01.T01:CDS 40.0%
! ACAATGTCTTTGAGGATGTC+CGG - Chr7:45457280-45457299 MsG0780038378.01.T01:intron 40.0%
! ATGGAACAAGGACACCATTT+TGG + Chr7:45453812-45453831 None:intergenic 40.0%
! CTTTGAAGACAAGTCTCCAA+TGG + Chr7:45454586-45454605 None:intergenic 40.0%
! TATAGCGGCTACTTTGCTAT+CGG - Chr7:45457497-45457516 MsG0780038378.01.T01:intron 40.0%
! TGGAACAAGGACACCATTTT+GGG + Chr7:45453811-45453830 None:intergenic 40.0%
! TTGAGTGCCAATGTTGACTA+CGG + Chr7:45455892-45455911 None:intergenic 40.0%
!! CAAGAGGAAGGTATTTCTTG+AGG + Chr7:45455589-45455608 None:intergenic 40.0%
!! TTTGGAAAGAGTGTTGGAGA+AGG + Chr7:45453837-45453856 None:intergenic 40.0%
!!! GTAAACTGGTTTTGAAGCCA+TGG + Chr7:45454033-45454052 None:intergenic 40.0%
ATGATCATGAGGAGAGAGAG+TGG - Chr7:45454552-45454571 MsG0780038378.01.T01:CDS 45.0%
ATGTGTGACGAGGAATCGAA+AGG + Chr7:45456102-45456121 None:intergenic 45.0%
ATGTTGTAGTGGCAACCTTG+AGG + Chr7:45455490-45455509 None:intergenic 45.0%
CACAATAAGCGAATCCGAGA+AGG - Chr7:45455517-45455536 MsG0780038378.01.T01:intron 45.0%
CCAGACACGTGTTTAATGTG+AGG + Chr7:45458062-45458081 None:intergenic 45.0%
CCTCACATTAAACACGTGTC+TGG - Chr7:45458059-45458078 MsG0780038378.01.T01:five_prime_UTR 45.0%
GAGAGTGGAAAGCTTACCAT+TGG - Chr7:45454567-45454586 MsG0780038378.01.T01:CDS 45.0%
GCACGTTCATCGATAGTTGT+CGG + Chr7:45455783-45455802 None:intergenic 45.0%
GCTGGAAATGACATTGTGCA+AGG - Chr7:45457914-45457933 MsG0780038378.01.T01:five_prime_UTR 45.0%
GGATGTACCGTAGTCAACAT+TGG - Chr7:45455882-45455901 MsG0780038378.01.T01:intron 45.0%
TCCTAGTTACATGTGTGACG+AGG + Chr7:45456112-45456131 None:intergenic 45.0%
TCCTCGTCACACATGTAACT+AGG - Chr7:45456108-45456127 MsG0780038378.01.T01:intron 45.0%
TGAACTATGACAGCTCTTCC+CGG - Chr7:45453784-45453803 MsG0780038378.01.T01:intron 45.0%
TGCGATTTCGAAGAGATCGT+TGG + Chr7:45455621-45455640 None:intergenic 45.0%
TGGTTGAAGGATCAAGAGGA+AGG + Chr7:45455601-45455620 None:intergenic 45.0%
TGTAACATACGACGCCTTCT+CGG + Chr7:45455534-45455553 None:intergenic 45.0%
TTGGAGAAGGAGATGGAACA+AGG + Chr7:45453824-45453843 None:intergenic 45.0%
! TCGAAGAGATCGTTGGTTGA+AGG + Chr7:45455614-45455633 None:intergenic 45.0%
! TCGTTGGTTGAAGGATCAAG+AGG + Chr7:45455605-45455624 None:intergenic 45.0%
!! AAGAGTGTTGGAGAAGGAGA+TGG + Chr7:45453831-45453850 None:intergenic 45.0%
!! TATGACTCTTGTGGCCTTGT+AGG - Chr7:45456835-45456854 MsG0780038378.01.T01:intron 45.0%
!!! AACTCCTCAACTTTTGGAGC+TGG - Chr7:45456409-45456428 MsG0780038378.01.T01:intron 45.0%
!!! AACTTTTGGAGCTGGTTGGT+TGG - Chr7:45456417-45456436 MsG0780038378.01.T01:intron 45.0%
!!! ACTTTTGGAGCTGGTTGGTT+GGG - Chr7:45456418-45456437 MsG0780038378.01.T01:intron 45.0%
CCAACCAGCTCCAAAAGTTG+AGG + Chr7:45456416-45456435 None:intergenic 50.0%
! ACTCTTGACAAGGTGTCACC+TGG - Chr7:45457773-45457792 MsG0780038378.01.T01:CDS 50.0%
! CTCTTGACAAGGTGTCACCT+GGG - Chr7:45457774-45457793 MsG0780038378.01.T01:CDS 50.0%
! GCTGGTTGGTTGGGATAGTA+AGG - Chr7:45456427-45456446 MsG0780038378.01.T01:intron 50.0%
! GTCTTTGAGGATGTCCGGAA+CGG - Chr7:45457285-45457304 MsG0780038378.01.T01:intron 50.0%
! TCTTTGAGGATGTCCGGAAC+GGG - Chr7:45457286-45457305 MsG0780038378.01.T01:intron 50.0%
!! ACTGACTCGAAGCACTGACT+CGG - Chr7:45455020-45455039 MsG0780038378.01.T01:intron 50.0%
!!! AAGGACACCATTTTGGGACC+GGG + Chr7:45453805-45453824 None:intergenic 50.0%
!!! CAAGGACACCATTTTGGGAC+CGG + Chr7:45453806-45453825 None:intergenic 50.0%
!!! CCTCAACTTTTGGAGCTGGT+TGG - Chr7:45456413-45456432 MsG0780038378.01.T01:intron 50.0%
AGCTCTTCCCGGTCCCAAAA+TGG - Chr7:45453795-45453814 MsG0780038378.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 45453751 45458088 45453751 ID=MsG0780038378.01;Name=MsG0780038378.01
Chr7 mRNA 45453751 45458088 45453751 ID=MsG0780038378.01.T01;Parent=MsG0780038378.01;Name=MsG0780038378.01.T01;_AED=0.49;_eAED=0.51;_QI=246|0.66|0.7|1|1|1|10|0|431
Chr7 exon 45453751 45453798 45453751 ID=MsG0780038378.01.T01:exon:5141;Parent=MsG0780038378.01.T01
Chr7 exon 45453935 45454082 45453935 ID=MsG0780038378.01.T01:exon:5140;Parent=MsG0780038378.01.T01
Chr7 exon 45454532 45454687 45454532 ID=MsG0780038378.01.T01:exon:5139;Parent=MsG0780038378.01.T01
Chr7 exon 45454903 45454982 45454903 ID=MsG0780038378.01.T01:exon:5138;Parent=MsG0780038378.01.T01
Chr7 exon 45455195 45455311 45455195 ID=MsG0780038378.01.T01:exon:5137;Parent=MsG0780038378.01.T01
Chr7 exon 45455391 45455462 45455391 ID=MsG0780038378.01.T01:exon:5136;Parent=MsG0780038378.01.T01
Chr7 exon 45455910 45456081 45455910 ID=MsG0780038378.01.T01:exon:5135;Parent=MsG0780038378.01.T01
Chr7 exon 45456179 45456423 45456179 ID=MsG0780038378.01.T01:exon:5134;Parent=MsG0780038378.01.T01
Chr7 exon 45457120 45457290 45457120 ID=MsG0780038378.01.T01:exon:5133;Parent=MsG0780038378.01.T01
Chr7 exon 45457756 45458088 45457756 ID=MsG0780038378.01.T01:exon:5132;Parent=MsG0780038378.01.T01
Chr7 five_prime_UTR 45457843 45458088 45457843 ID=MsG0780038378.01.T01:five_prime_utr;Parent=MsG0780038378.01.T01
Chr7 CDS 45457756 45457842 45457756 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45457120 45457290 45457120 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45456179 45456423 45456179 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45455910 45456081 45455910 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45455391 45455462 45455391 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45455195 45455311 45455195 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45454903 45454982 45454903 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45454532 45454687 45454532 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45453935 45454082 45453935 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Chr7 CDS 45453751 45453798 45453751 ID=MsG0780038378.01.T01:cds;Parent=MsG0780038378.01.T01
Gene Sequence

>MsG0780038378.01.T01

ATGTCAAGTCATTGGGGTATTATAGTTTCAGATCCATGGCTTCAAAACCAGTTTACACAAGTTGAACTTCGCAGCTTAAAATCACAATTCATGATCATGAGGAGAGAGAGTGGAAAGCTTACCATTGGAGACTTGTCTTCAAAGATGTCAAGATTAAAAGTTGTAGGAGAAAATCTTAGTGAACAAGAGAGAGATTCTTATATCAATGATTTGCATCAGAAATCAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTGCAAACTTTTGCAAGTTCTAGAACAGGAAGCAATAATGCAAAAAACTCATCAGCATTCCTCAAGGTTGCCACTACAACATTGCTTCACACAATAAGCGAATCCGAGAAGGCGTCGTATGTTACACATATAAATAACTATCTTGCAGAAGATGAATTCCTCAAGAAATACCTTCCTCTTGATCCTTCAACCAACGATCTCTTCGAAATCGCAAAAGACGGTGTTCTTCTTTGTAAACTTATTAATGTGGCAGTTCCGACAACTATCGATGAACGTGCAATCAATACAAAAAGATTACTTAACCCTTGGGAAAGAAATGAAAATCACACACTTTGCCTCAATTCTGCTAAAGCAATTGGATGTACCGTAGTCAACATTGGCACTCAAGACTTAATTGAAGGAAGGATACAATTATTGGCGAATCTGAACCTAAAGAAAACTCCTCAACTTTTGGAGCTGGTTGGTTGGGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCACCAGAAAAAATCTTGTTGAGATGGATGAATTTCCATTTGAAGAAAACAGAATATAAGAAGATTGTCGCAAATTTCTCCTCCGATGTTAAGGATGCAGAAGCTTATGCTCACCTTCTAAATGTTCTTGCATCTGAATACACTAATCCATCGACATTAGCTGTGAAAAATCCGAATGGACTTTCAACTCTAGCAAAACAAAGTTCTCTCCTTGACTCATTGCTAGATGATACTCAAGACTCAAGAGAAGAGAGAGTTTTTCGCCTTTGGATTAATAGTCTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATGTCCGGAACGGGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCACCTGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCTATAAAGATGCCATTTAAAAAAGTTGAGAATTGCAATCAAGTTGTGAAAATTGGGAAACAACTAAAGTTTTCCTTGATGTCTGTAGCGACGAAACCTCACATTAAACACGTGTCTGGTGTCTGA

Protein sequence

>MsG0780038378.01.T01

MSSHWGIIVSDPWLQNQFTQVELRSLKSQFMIMRRESGKLTIGDLSSKMSRLKVVGENLSEQERDSYINDLHQKSDEDVDFELFLKVYLKLQTFASSRTGSNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEIAKDGVLLCKLINVAVPTTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRIQLLANLNLKKTPQLLELVGWDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVANFSSDVKDAEAYAHLLNVLASEYTNPSTLAVKNPNGLSTLAKQSSLLDSLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLMSVATKPHIKHVSGV*